|
2d_auto_threshold |
ip_threshold |
Automatic thresholding |
2019-01-22 |
https://github.com/bmcv |
0.25.0 |
scikit-image |
|
To update |
Imaging |
Image analysis, Image annotation, Visualisation, Data handling |
Image analysis, Image annotation, Visualisation, Data handling |
Imaging, Software engineering, Literature and language |
Imaging, Software engineering, Literature and language |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold |
scikit-image |
scikit-image |
Scikit-image contains image processing algorithms for SciPy, including IO, morphology, filtering, warping, color manipulation, object detection, etc. |
scikit-image |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
106 |
125 |
1275 |
6826 |
2 |
2 |
11 |
11 |
12 |
12 |
440 |
440 |
0 |
0 |
0 |
0 |
7277 |
1726 |
139 |
120 |
https://dev.workflowhub.eu/workflows/1258?version=3, https://dev.workflowhub.eu/workflows/1270?version=3, https://dev.workflowhub.eu/workflows/1364?version=1, https://usegalaxy.eu/published/workflow?id=035f85c1615e0b7b, https://usegalaxy.eu/published/workflow?id=1ffacb28226460ac, https://usegalaxy.eu/published/workflow?id=23030421cd9fcfb2, https://usegalaxy.eu/published/workflow?id=50c47c5b285f7c00, https://usegalaxy.eu/published/workflow?id=6fbd9b2274c62ebe, https://usegalaxy.eu/published/workflow?id=7d7550ce7004d71e, https://usegalaxy.eu/published/workflow?id=bc78c184fabcff1d, https://usegalaxy.eu/published/workflow?id=cf196794bbd365d8, https://usegalaxy.eu/published/workflow?id=dc8b78d093be59ae, https://usegalaxy.eu/published/workflow?id=e87e726b57f1a875, https://usegalaxy.org.au/published/workflow?id=2a1e4de0dc77bbed, https://usegalaxy.org.au/published/workflow?id=8e28c3b252062b3b, https://usegalaxy.org/published/workflow?id=a8e39acc103c3d6b, https://usegalaxy.org/published/workflow?id=d47cddc372c88094, https://workflowhub.eu/workflows/1259?version=1, https://workflowhub.eu/workflows/1508?version=1, https://workflowhub.eu/workflows/1517?version=1, https://workflowhub.eu/workflows/1522?version=1, https://workflowhub.eu/workflows/1526?version=1, https://workflowhub.eu/workflows/1532?version=1, https://workflowhub.eu/workflows/1730?version=1, https://workflowhub.eu/workflows/771?version=2 |
imaging/hela-screen-analysis, imaging/imaging-introduction, imaging/parameter-tuning, imaging/process-image-bioimageio, imaging/voronoi-segmentation |
|
2d_feature_extraction |
ip_2d_feature_extraction |
2D feature extraction |
2019-01-08 |
https://github.com/bmcv |
0.18.1 |
scikit-image |
|
To update |
Imaging |
Image analysis, Image annotation, Visualisation, Data handling |
Image analysis, Image annotation, Visualisation, Data handling |
Imaging, Software engineering, Literature and language |
Imaging, Software engineering, Literature and language |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_feature_extraction/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_feature_extraction |
scikit-image |
scikit-image |
Scikit-image contains image processing algorithms for SciPy, including IO, morphology, filtering, warping, color manipulation, object detection, etc. |
scikit-image |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
30 |
44 |
819 |
13885 |
0 |
0 |
0 |
0 |
4 |
4 |
142 |
142 |
0 |
0 |
0 |
0 |
14027 |
961 |
48 |
34 |
https://dev.workflowhub.eu/workflows/1270?version=3, https://dev.workflowhub.eu/workflows/1364?version=1, https://usegalaxy.eu/published/workflow?id=035f85c1615e0b7b, https://usegalaxy.eu/published/workflow?id=1ffacb28226460ac, https://usegalaxy.eu/published/workflow?id=23030421cd9fcfb2, https://usegalaxy.eu/published/workflow?id=50c47c5b285f7c00, https://usegalaxy.eu/published/workflow?id=bc78c184fabcff1d, https://usegalaxy.eu/published/workflow?id=cf196794bbd365d8, https://workflowhub.eu/workflows/1259?version=1, https://workflowhub.eu/workflows/1508?version=1, https://workflowhub.eu/workflows/1522?version=1, https://workflowhub.eu/workflows/1730?version=1 |
imaging/hela-screen-analysis, imaging/voronoi-segmentation |
|
2d_filter_segmentation_by_features |
ip_2d_filter_segmentation_by_features |
filter segmentation by rules |
2019-07-19 |
https://github.com/bmcv |
0.0.1-4 |
scikit-image |
|
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_filter_segmentation_by_features/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_filter_segmentation_by_features |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
26 |
40 |
407 |
6875 |
0 |
0 |
0 |
0 |
3 |
3 |
140 |
140 |
0 |
0 |
0 |
0 |
7015 |
547 |
43 |
29 |
https://dev.workflowhub.eu/workflows/1270?version=3, https://usegalaxy.eu/published/workflow?id=1ffacb28226460ac, https://usegalaxy.eu/published/workflow?id=50c47c5b285f7c00, https://usegalaxy.eu/published/workflow?id=cf196794bbd365d8, https://workflowhub.eu/workflows/1508?version=1 |
imaging/hela-screen-analysis |
|
2d_histogram_equalization |
ip_histogram_equalization |
2d histogram equalization |
2019-07-23 |
https://github.com/bmcv |
0.18.1 |
scikit-image |
|
To update |
Imaging |
Image analysis, Image annotation, Visualisation, Data handling |
Image analysis, Image annotation, Visualisation, Data handling |
Imaging, Software engineering, Literature and language |
Imaging, Software engineering, Literature and language |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization |
scikit-image |
scikit-image |
Scikit-image contains image processing algorithms for SciPy, including IO, morphology, filtering, warping, color manipulation, object detection, etc. |
scikit-image |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
85 |
103 |
740 |
807 |
2 |
2 |
6 |
6 |
15 |
15 |
258 |
258 |
0 |
0 |
0 |
0 |
1071 |
1004 |
120 |
102 |
https://dev.workflowhub.eu/workflows/1258?version=3, https://usegalaxy.eu/published/workflow?id=1ffacb28226460ac, https://usegalaxy.eu/published/workflow?id=6fbd9b2274c62ebe, https://usegalaxy.eu/published/workflow?id=7d7550ce7004d71e, https://usegalaxy.eu/published/workflow?id=bc78c184fabcff1d, https://usegalaxy.eu/published/workflow?id=dc8b78d093be59ae, https://usegalaxy.org.au/published/workflow?id=2a1e4de0dc77bbed, https://usegalaxy.org.au/published/workflow?id=8e28c3b252062b3b, https://usegalaxy.org/published/workflow?id=a8e39acc103c3d6b, https://usegalaxy.org/published/workflow?id=d47cddc372c88094, https://workflowhub.eu/workflows/1259?version=1, https://workflowhub.eu/workflows/1517?version=1, https://workflowhub.eu/workflows/1528?version=1, https://workflowhub.eu/workflows/1532?version=1, https://workflowhub.eu/workflows/1730?version=1, https://workflowhub.eu/workflows/771?version=2 |
imaging/2D-spot-detection, imaging/imaging-introduction, imaging/parameter-tuning |
|
2d_simple_filter |
ip_filter_standard |
2d simple filter |
2019-01-22 |
https://github.com/bmcv |
1.12.0 |
scipy |
|
To update |
Imaging |
|
|
|
|
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_simple_filter/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_simple_filter |
|
|
|
scipy |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
83 |
103 |
751 |
6302 |
2 |
2 |
3 |
3 |
15 |
15 |
307 |
307 |
0 |
0 |
0 |
0 |
6612 |
1061 |
120 |
100 |
https://dev.workflowhub.eu/workflows/1258?version=3, https://dev.workflowhub.eu/workflows/1270?version=3, https://usegalaxy.eu/published/workflow?id=1ffacb28226460ac, https://usegalaxy.eu/published/workflow?id=23030421cd9fcfb2, https://usegalaxy.eu/published/workflow?id=50c47c5b285f7c00, https://usegalaxy.eu/published/workflow?id=6fbd9b2274c62ebe, https://usegalaxy.eu/published/workflow?id=7d7550ce7004d71e, https://usegalaxy.eu/published/workflow?id=bc78c184fabcff1d, https://usegalaxy.eu/published/workflow?id=cf196794bbd365d8, https://usegalaxy.eu/published/workflow?id=dc8b78d093be59ae, https://usegalaxy.org.au/published/workflow?id=2a1e4de0dc77bbed, https://usegalaxy.org.au/published/workflow?id=8e28c3b252062b3b, https://usegalaxy.org/published/workflow?id=a8e39acc103c3d6b, https://usegalaxy.org/published/workflow?id=d47cddc372c88094, https://workflowhub.eu/workflows/1259?version=1, https://workflowhub.eu/workflows/1508?version=1, https://workflowhub.eu/workflows/1517?version=1, https://workflowhub.eu/workflows/1522?version=1, https://workflowhub.eu/workflows/1532?version=1, https://workflowhub.eu/workflows/1730?version=1, https://workflowhub.eu/workflows/771?version=2 |
imaging/hela-screen-analysis, imaging/imaging-introduction, imaging/parameter-tuning, imaging/voronoi-segmentation |
|
2dnmrannotation |
2DNmrAnnotation |
[Metabolomics][W4M][NMR] NMR Annotation2D - Automatic annotation of bi-dimensional NMR spectra |
2020-02-04 |
http://workflow4metabolomics.org |
2.0.0+galaxy3 |
r-batch |
1.1_4 |
To update |
Metabolomics |
|
|
|
|
marie-tremblay-metatoul |
https://github.com/workflow4metabolomics/tools-metabolomics |
https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/nmr_annotation2d |
|
|
|
|
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
12 |
57 |
57 |
57 |
57 |
12 |
12 |
|
|
|
Ensembl-REST |
get_feature_info, get_genetree, get_sequences |
A suite of Galaxy tools designed to work with Ensembl REST API. |
2015-10-02 |
https://rest.ensembl.org |
1.0.0 |
python |
|
To update |
Data Source |
|
|
|
|
earlhaminst |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/Ensembl-REST |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/Ensembl-REST |
|
|
|
|
0 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
0 |
59 |
82 |
417 |
2927 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2927 |
417 |
82 |
59 |
https://usegalaxy.eu/published/workflow?id=d22dac11eba8c5a3 |
|
|
abacas |
abacas |
Order and Orientate Contigs |
2019-11-20 |
https://github.com/phac-nml/abacas |
1.1 |
mummer |
3.23 |
To update |
Assembly |
|
|
|
|
nml |
https://github.com/phac-nml/abacas |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/abacas |
|
|
|
|
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
anisotropic_diffusion |
ip_anisotropic_diffusion |
Anisotropic image diffusion |
2018-12-04 |
https://github.com/bmcv |
0.4.0 |
medpy |
0.4.0 |
Up-to-date |
Imaging |
|
|
|
|
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/anisotropic-diffusion/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/anisotropic_diffusion |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
2 |
2 |
26 |
41 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
41 |
26 |
2 |
2 |
|
|
|
apoc |
apoc |
Large-scale structural comparison of protein pockets |
2017-07-04 |
https://sites.gatech.edu/cssb/apoc/ |
1.0+galaxy1 |
apoc |
1b16 |
To update |
Computational chemistry |
|
|
|
|
earlhaminst |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/apoc/ |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/apoc |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
5 |
5 |
8 |
8 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
9 |
9 |
6 |
6 |
|
|
|
apollo |
create_account, feat_from_gff3, create_or_update, delete_features, delete_organism, export, fetch_jbrowse, iframe, list_organism |
Access an Apollo instance from Galaxy |
2017-06-12 |
https://github.com/galaxy-genome-annotation/python-apollo |
|
apollo |
4.2.13 |
To update |
Web Services |
|
|
|
|
gga |
https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo |
https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo |
|
|
|
|
0 |
0 |
9 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
9 |
9 |
0 |
324 |
330 |
4512 |
4820 |
2 |
2 |
6 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4826 |
4518 |
332 |
326 |
https://dev.workflowhub.eu/workflows/1190?version=2, https://usegalaxy.eu/published/workflow?id=0b9071d5dfa38559, https://usegalaxy.eu/published/workflow?id=3c233cc56d4df8b0, https://usegalaxy.eu/published/workflow?id=3dcf09e75d707573, https://usegalaxy.eu/published/workflow?id=44189803f223acd1, https://usegalaxy.eu/published/workflow?id=7f6950394a8c9c4a, https://usegalaxy.eu/published/workflow?id=c0f225536e78a178, https://usegalaxy.eu/published/workflow?id=df7d9943423549df, https://usegalaxy.eu/published/workflow?id=f62d7c0c7cc57eb6, https://workflowhub.eu/workflows/1554?version=1, https://workflowhub.eu/workflows/749?version=1 |
genome-annotation/apollo, genome-annotation/apollo-euk |
|
askomics |
askomics_integrate |
Galaxy tools allowing to interact with a remote AskOmics server.AskOmics is a visual SPARQL query builder for RDF database.https://github.com/askomics/ |
2017-08-11 |
https://github.com/askomics/ |
|
askocli |
0.5 |
To update |
Web Services |
|
|
|
|
gga |
https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/askomics |
https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/askomics |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
askor_de |
askor_de |
AskoR links EdgeR and AskOmics |
2018-04-06 |
https://github.com/askomics/askoR |
0.2 |
bioconductor-limma |
3.62.1 |
To update |
Transcriptomics |
|
|
|
|
genouest |
https://github.com/genouest/galaxy-tools/tree/master/tools/askor |
https://github.com/genouest/galaxy-tools/tree/master/tools/askor |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
3 |
3 |
3 |
3 |
1 |
1 |
|
|
|
assemblystats |
assemblystats |
Summarise an assembly (e.g. N50 metrics) |
2017-10-13 |
https://github.com/phac-nml/galaxy_tools |
1.1.0 |
perl-bioperl |
1.7.8 |
To update |
Assembly |
|
|
|
|
nml |
https://github.com/phac-nml/galaxy_tools |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/assemblystats |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
background_removal |
background_removal |
Background removal filters using scikit-image |
2024-07-12 |
https://github.com/bmcv |
0.24.0 |
scikit-image |
|
To update |
Imaging |
|
|
|
|
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tools/background_removal |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/background_removal |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
30 |
30 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
30 |
30 |
3 |
3 |
|
|
|
bam2mappingstats |
bam2mappingstats |
Generates mapping stats from a bam file. |
2017-10-13 |
https://github.com/phac-nml/galaxy_tools |
1.1.0 |
perl |
|
To update |
Assembly |
|
|
|
|
nml |
https://github.com/phac-nml/galaxy_tools |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/bam2mappingstats |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
bamclipper |
bamclipper |
Soft-clip gene-specific primers from BAM alignment file based on genomic coordinates of primer pairs in BEDPE format. |
2020-04-28 |
https://github.com/tommyau/bamclipper |
1.0.0 |
bamclipper |
1.0.0 |
Up-to-date |
Sequence Analysis |
|
|
|
|
nml |
https://github.com/tommyau/bamclipper |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/bamclipper |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
baric_archive |
baric_archive_rennes, baric_archive_toulouse |
A data source tool to fetch data from a BARIC Archive server. |
2022-03-03 |
https://www.cesgo.org/catibaric/ |
1.1.0 |
|
|
To update |
Data Source |
|
|
|
|
genouest |
https://github.com/genouest/galaxy-tools/tree/master/tools/baric_archive |
https://github.com/genouest/galaxy-tools/tree/master/tools/baric_archive |
|
|
|
|
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
16 |
16 |
16 |
16 |
4 |
4 |
|
|
|
batched_lastz |
batched_lastz |
Galaxy wrapper for the batching Lastz runs |
2024-04-30 |
https://github.com/galaxyproject/KegAlign |
1.04.22 |
lastz |
1.04.52 |
To update |
Next Gen Mappers |
|
|
|
|
richard-burhans |
https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz |
https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz |
|
|
|
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
23 |
23 |
226 |
226 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
226 |
226 |
23 |
23 |
https://usegalaxy.org/published/workflow?id=ca68ad0d7420c615 |
|
|
bfconvert |
ip_convertimage |
Convert image |
2019-07-22 |
https://github.com/bmcv |
6.7.0 |
bftools |
8.0.0 |
To update |
Imaging, Convert Formats |
|
|
|
|
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/bfconvert/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/bfconvert |
|
|
|
python-bioformats |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
107 |
126 |
1601 |
1713 |
1 |
1 |
1 |
1 |
23 |
23 |
404 |
404 |
0 |
0 |
0 |
0 |
2118 |
2006 |
150 |
131 |
https://dev.workflowhub.eu/workflows/1267?version=2, https://usegalaxy.eu/published/workflow?id=1ffacb28226460ac, https://usegalaxy.eu/published/workflow?id=23030421cd9fcfb2, https://usegalaxy.eu/published/workflow?id=6fbd9b2274c62ebe, https://usegalaxy.eu/published/workflow?id=bc78c184fabcff1d, https://usegalaxy.eu/published/workflow?id=dc8b78d093be59ae, https://usegalaxy.org.au/published/workflow?id=2a1e4de0dc77bbed, https://usegalaxy.org.au/published/workflow?id=8e28c3b252062b3b, https://usegalaxy.org/published/workflow?id=a8e39acc103c3d6b, https://usegalaxy.org/published/workflow?id=d47cddc372c88094, https://workflowhub.eu/workflows/1259?version=1, https://workflowhub.eu/workflows/1337?version=2, https://workflowhub.eu/workflows/1514?version=1, https://workflowhub.eu/workflows/1522?version=1, https://workflowhub.eu/workflows/1730?version=1, https://workflowhub.eu/workflows/771?version=2 |
imaging/multiplex-tissue-imaging-TMA, imaging/voronoi-segmentation |
|
binary2labelimage |
ip_binary_to_labelimage |
Binary 2 label image |
2017-02-11 |
https://github.com/bmcv |
0.6 |
giatools |
0.4.1 |
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/binary2labelimage/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/binary2labelimage |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
75 |
91 |
432 |
1446 |
3 |
3 |
5 |
5 |
10 |
10 |
238 |
238 |
0 |
0 |
0 |
0 |
1689 |
675 |
104 |
88 |
https://dev.workflowhub.eu/workflows/1258?version=3, https://dev.workflowhub.eu/workflows/1270?version=3, https://dev.workflowhub.eu/workflows/1364?version=1, https://usegalaxy.eu/published/workflow?id=1ffacb28226460ac, https://usegalaxy.eu/published/workflow?id=23030421cd9fcfb2, https://usegalaxy.eu/published/workflow?id=50c47c5b285f7c00, https://usegalaxy.eu/published/workflow?id=6fbd9b2274c62ebe, https://usegalaxy.eu/published/workflow?id=7d7550ce7004d71e, https://usegalaxy.eu/published/workflow?id=bc78c184fabcff1d, https://usegalaxy.eu/published/workflow?id=dc8b78d093be59ae, https://usegalaxy.org.au/published/workflow?id=2a1e4de0dc77bbed, https://usegalaxy.org.au/published/workflow?id=8e28c3b252062b3b, https://usegalaxy.org/published/workflow?id=a8e39acc103c3d6b, https://usegalaxy.org/published/workflow?id=d47cddc372c88094, https://workflowhub.eu/workflows/1259?version=1, https://workflowhub.eu/workflows/1508?version=1, https://workflowhub.eu/workflows/1522?version=1, https://workflowhub.eu/workflows/1526?version=1, https://workflowhub.eu/workflows/1532?version=1, https://workflowhub.eu/workflows/1730?version=1, https://workflowhub.eu/workflows/771?version=2 |
imaging/2D-spot-detection, imaging/hela-screen-analysis, imaging/imaging-introduction, imaging/process-image-bioimageio, imaging/voronoi-segmentation |
|
binaryimage2points |
ip_binaryimage_to_points |
Binary Image to Points |
2017-10-30 |
https://github.com/bmcv |
0.1-2 |
numpy |
|
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/binaryimage2points/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/binaryimage2points |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
1 |
1 |
17 |
29 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
29 |
17 |
1 |
1 |
|
|
|
bioformats2raw |
bf2raw |
Convert image to OME-Zarr |
2023-11-02 |
https://github.com/Euro-BioImaging |
0.7.0 |
|
|
To update |
Imaging, Convert Formats |
|
|
|
|
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/bioformats2raw |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/bioformats2raw |
|
|
|
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
62 |
62 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
62 |
62 |
4 |
4 |
|
|
|
biohansel |
biohansel |
Heidelberg and Enteritidis SNP Elucidation |
2018-08-01 |
https://github.com/phac-nml/biohansel |
2.4.0 |
bio_hansel |
2.6.1 |
To update |
Sequence Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/biohansel |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/biohansel |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
biohansel_bionumeric_converter |
bionumeric_convert |
Convert BioHansel output data to a Bionumerics friendly form |
2019-03-15 |
https://github.com/phac-nml/galaxy_tools |
0.2.0 |
pandas |
|
To update |
Text Manipulation |
|
|
|
|
nml |
|
https://github.com/phac-nml/galaxy_tools/tree/master/tools/biohansel_bionumeric_converter |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
blast_parser |
blast_parser |
Convert 12- or 24-column BLAST output into 3-column hcluster_sg input |
2015-08-06 |
https://github.com/TGAC/earlham-galaxytools/ |
0.2.0 |
python |
|
To update |
Phylogenetics |
|
|
|
|
earlhaminst |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/blast_parser |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/blast_parser |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
111 |
119 |
518 |
563 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
563 |
518 |
119 |
111 |
https://usegalaxy.eu/published/workflow?id=2cec6a39cd496f09 |
|
|
braker |
braker |
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes . |
2021-10-05 |
https://github.com/Gaius-Augustus/BRAKER |
2.1.6 |
|
|
To update |
Genome annotation |
|
|
|
|
genouest |
https://github.com/genouest/galaxy-tools/tree/master/tools/braker |
https://github.com/genouest/galaxy-tools/tree/master/tools/braker |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
66 |
66 |
208 |
208 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
9 |
9 |
217 |
217 |
67 |
67 |
|
|
|
braker3 |
braker3 |
BRAKER3 is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes . |
2023-06-13 |
https://github.com/Gaius-Augustus/BRAKER |
3.0.8 |
|
|
To update |
Genome annotation |
Genome annotation, Gene prediction |
Genome annotation, Gene prediction |
RNA-Seq, Genomics, Structure prediction, Sequence analysis |
RNA-Seq, Genomics, Structure prediction, Sequence analysis |
genouest |
https://github.com/genouest/galaxy-tools/tree/master/tools/braker |
https://github.com/genouest/galaxy-tools/tree/master/tools/braker3 |
braker3 |
BRAKER3 |
BRAKER3 is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes |
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
447 |
447 |
3164 |
3164 |
0 |
0 |
0 |
0 |
91 |
91 |
561 |
561 |
17 |
17 |
203 |
203 |
3928 |
3928 |
555 |
555 |
https://workflowhub.eu/workflows/1509?version=1, https://workflowhub.eu/workflows/1746?version=1 |
genome-annotation/braker3, genome-annotation/comparison-braker-helixer-annotation |
|
bundle_collections |
bundle_collection |
Tool to bundle up list collection into a single zip to be download |
2015-11-20 |
|
1.3.0 |
perl-getopt-long |
2.58 |
To update |
Sequence Analysis |
|
|
|
|
nml |
|
https://github.com/phac-nml/galaxy_tools/tree/master/tools/bundle_collections |
|
|
|
|
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
2 |
2 |
78 |
83 |
1659 |
1707 |
36 |
36 |
1891 |
1891 |
3600 |
3552 |
120 |
115 |
https://workflowhub.eu/workflows/373?version=2, https://workflowhub.eu/workflows/374?version=1, https://workflowhub.eu/workflows/375?version=1 |
|
|
camera |
abims_CAMERA_annotateDiffreport, abims_CAMERA_combinexsAnnos, CAMERA_findAdducts, CAMERA_findIsotopes, CAMERA_groupCorr, CAMERA_groupFWHM |
|
2023-05-25 |
|
1.48.0 |
r-snow |
0.4_1 |
To update |
Metabolomics |
|
|
|
|
workflow4metabolomics |
|
https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/camera |
|
|
|
|
1 |
2 |
2 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
2 |
2 |
0 |
124 |
137 |
642 |
818 |
39 |
39 |
80 |
80 |
21 |
22 |
747 |
822 |
831 |
831 |
14789 |
14795 |
16515 |
16258 |
1029 |
1015 |
https://dev.workflowhub.eu/workflows/1065?version=1, https://usegalaxy.fr/published/workflow?id=06fa7dd6eea42350, https://usegalaxy.fr/published/workflow?id=15275ba7c23028ed, https://usegalaxy.fr/published/workflow?id=180744a2f8dca6eb, https://usegalaxy.fr/published/workflow?id=19e99a5c09c01bb7, https://usegalaxy.fr/published/workflow?id=26a3e5741d66982a, https://usegalaxy.fr/published/workflow?id=26bdb32c017d798c, https://usegalaxy.fr/published/workflow?id=2ee479308227a926, https://usegalaxy.fr/published/workflow?id=3c41c4c5a6332c25, https://usegalaxy.fr/published/workflow?id=57748aa2cecf0405, https://usegalaxy.fr/published/workflow?id=5964606a3836cbdf, https://usegalaxy.fr/published/workflow?id=5ec8a143f82a8c90, https://usegalaxy.fr/published/workflow?id=6895bf9cff915ba1, https://usegalaxy.fr/published/workflow?id=7a790b0acf8ba14d, https://usegalaxy.fr/published/workflow?id=7cc77d6cdd8de027, https://usegalaxy.fr/published/workflow?id=98bb6a831a2b399d, https://usegalaxy.fr/published/workflow?id=b6311795ae10032b, https://usegalaxy.fr/published/workflow?id=bb69fa998b900cb8, https://usegalaxy.fr/published/workflow?id=bcd348178335a19b, https://usegalaxy.fr/published/workflow?id=dc17a87057dec748, https://usegalaxy.fr/published/workflow?id=e6a55d00f1364794, https://usegalaxy.fr/published/workflow?id=e6f26a543c3e044a, https://usegalaxy.fr/published/workflow?id=f49e102f63d3e2bb, https://usegalaxy.org.au/published/workflow?id=f9e5caaf08a450ec, https://usegalaxy.org.au/published/workflow?id=fa0243ff9b5ca997, https://usegalaxy.org/published/workflow?id=650f3eb7647b4508, https://usegalaxy.org/published/workflow?id=aeeaf3e06a13bc22, https://workflowhub.eu/workflows/1584?version=1, https://workflowhub.eu/workflows/677?version=2 |
metabolomics/lcms, metabolomics/lcms-preprocessing |
|
cfmid |
cfmid |
Competitive Fragmentation Modeling (CFM) |
2019-03-07 |
https://sourceforge.net/p/cfm-id/ |
33 |
cfm |
33 |
Up-to-date |
Metabolomics |
|
|
|
|
computational-metabolomics |
https://github.com/computational-metabolomics/cfm-galaxy/tree/master/tools/cfm |
https://github.com/computational-metabolomics/cfm-galaxy/tree/master/tools/cfm |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
chado |
analysis_add_analysis, analysis_delete_analyses, analysis_get_analyses, export_export_fasta, export_export_gbk, export_export_gff3, expression_add_biomaterial, expression_add_expression, expression_delete_all_biomaterials, expression_delete_biomaterials, expression_get_biomaterials, feature_delete_features, feature_get_features, feature_load_fasta, feature_load_featureprops, feature_load_gff, feature_load_go, load_blast, load_interpro, organism_add_organism, organism_delete_all_organisms, organism_delete_organisms, organism_get_organisms, phylogeny_gene_families, phylogeny_gene_order, phylogeny_load_tree |
Galaxy tools allowing to load data into a remote Chado database.Chado is a member of the GMOD family of tools.https://github.com/galaxy-genome-annotation/python-chado |
2018-06-11 |
https://github.com/galaxy-genome-annotation/python-chado |
|
python-chado |
2.3.9 |
To update |
Web Services |
|
|
|
|
gga |
https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado |
https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
collapse_collections |
collapse_dataset |
Collection tool that collapses a list of files into a single datasset in order of appears in collection |
2015-12-10 |
|
5.1.0 |
gawk |
|
To update |
Sequence Analysis |
|
|
|
|
nml |
|
https://github.com/phac-nml/galaxy_tools/tree/master/tools/collapse_collection |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
4004 |
4151 |
61996 |
63551 |
3787 |
4437 |
24052 |
28297 |
887 |
922 |
4197 |
4418 |
166 |
166 |
2834 |
2834 |
99100 |
93079 |
9676 |
8844 |
https://dev.workflowhub.eu/workflows/1002?version=1, https://dev.workflowhub.eu/workflows/1077?version=2, https://dev.workflowhub.eu/workflows/1079?version=2, https://dev.workflowhub.eu/workflows/1083?version=1, https://dev.workflowhub.eu/workflows/1087?version=2, https://dev.workflowhub.eu/workflows/1113?version=2, https://dev.workflowhub.eu/workflows/1115?version=2, https://dev.workflowhub.eu/workflows/1117?version=1, https://dev.workflowhub.eu/workflows/1127?version=3, https://dev.workflowhub.eu/workflows/1132?version=2, https://dev.workflowhub.eu/workflows/1145?version=1, https://dev.workflowhub.eu/workflows/1173?version=2, https://dev.workflowhub.eu/workflows/1187?version=2, https://dev.workflowhub.eu/workflows/1197?version=2, https://dev.workflowhub.eu/workflows/1264?version=2, https://dev.workflowhub.eu/workflows/1271?version=3, https://dev.workflowhub.eu/workflows/1293?version=1, https://dev.workflowhub.eu/workflows/1351?version=1, https://dev.workflowhub.eu/workflows/1372?version=1, https://dev.workflowhub.eu/workflows/1384?version=1, https://dev.workflowhub.eu/workflows/1391?version=1, https://dev.workflowhub.eu/workflows/1440?version=1, https://dev.workflowhub.eu/workflows/1441?version=1, https://dev.workflowhub.eu/workflows/194?version=2, https://dev.workflowhub.eu/workflows/199?version=2, https://dev.workflowhub.eu/workflows/40?version=1, https://dev.workflowhub.eu/workflows/41?version=1, https://dev.workflowhub.eu/workflows/548?version=1, https://dev.workflowhub.eu/workflows/583?version=1, https://usegalaxy.eu/published/workflow?id=01fe4c590e608103, https://usegalaxy.eu/published/workflow?id=020f877513f2d0d1, https://usegalaxy.eu/published/workflow?id=02631612a43a4d9b, https://usegalaxy.eu/published/workflow?id=035f85c1615e0b7b, https://usegalaxy.eu/published/workflow?id=036990ecf300a99f, https://usegalaxy.eu/published/workflow?id=03e52c8c71710cae, https://usegalaxy.eu/published/workflow?id=05bd1d9c61df5d16, https://usegalaxy.eu/published/workflow?id=06544e74f583fd05, https://usegalaxy.eu/published/workflow?id=079e2a968d8e6176, https://usegalaxy.eu/published/workflow?id=07e1478df88a17cc, https://usegalaxy.eu/published/workflow?id=08f41680101a1a45, https://usegalaxy.eu/published/workflow?id=098f43ded1b5fa7f, https://usegalaxy.eu/published/workflow?id=09c7069ae409c362, https://usegalaxy.eu/published/workflow?id=0ae360bfbb3b2494, https://usegalaxy.eu/published/workflow?id=0bc971d84327da50, https://usegalaxy.eu/published/workflow?id=0c94260298199d8b, https://usegalaxy.eu/published/workflow?id=0cf3c2114ab65858, https://usegalaxy.eu/published/workflow?id=0e492839192d26e0, https://usegalaxy.eu/published/workflow?id=0fb12e3a127fc4be, https://usegalaxy.eu/published/workflow?id=117177b0c231dc55, https://usegalaxy.eu/published/workflow?id=133b299125ff9905, https://usegalaxy.eu/published/workflow?id=16080c3c1488a8b5, https://usegalaxy.eu/published/workflow?id=16418e8b023ff226, https://usegalaxy.eu/published/workflow?id=1749616cec69fb00, https://usegalaxy.eu/published/workflow?id=1860e02bcb894a64, https://usegalaxy.eu/published/workflow?id=1bb084f1bc102734, https://usegalaxy.eu/published/workflow?id=1c267e93aa8015e6, https://usegalaxy.eu/published/workflow?id=1da86d74f8535f4e, https://usegalaxy.eu/published/workflow?id=1f88311a8e365c17, https://usegalaxy.eu/published/workflow?id=20592f292c205954, https://usegalaxy.eu/published/workflow?id=21a3f72851f29925, https://usegalaxy.eu/published/workflow?id=220961d803697f54, https://usegalaxy.eu/published/workflow?id=2424282f793f0f1b, https://usegalaxy.eu/published/workflow?id=27fca972f1d1a312, https://usegalaxy.eu/published/workflow?id=2a33d4fcb806e942, https://usegalaxy.eu/published/workflow?id=2a39dbc8fc6dd5d3, https://usegalaxy.eu/published/workflow?id=2beaee398beda687, https://usegalaxy.eu/published/workflow?id=2c3d05023c02113e, https://usegalaxy.eu/published/workflow?id=2d509fad86eb97fb, https://usegalaxy.eu/published/workflow?id=2e6561d8dadc9e17, https://usegalaxy.eu/published/workflow?id=2f094f5e1f391529, https://usegalaxy.eu/published/workflow?id=3069c17b52decab4, https://usegalaxy.eu/published/workflow?id=31c6dcd3a25620df, https://usegalaxy.eu/published/workflow?id=3303a04887a47675, https://usegalaxy.eu/published/workflow?id=342a5df69951e3d7, https://usegalaxy.eu/published/workflow?id=344cd3a3c2ce5302, https://usegalaxy.eu/published/workflow?id=376119528377a3ae, https://usegalaxy.eu/published/workflow?id=37b04b02ec08e84f, https://usegalaxy.eu/published/workflow?id=389d992ff7268247, https://usegalaxy.eu/published/workflow?id=3aaea772745ca295, https://usegalaxy.eu/published/workflow?id=3c6ff60d1d3ceb3d, https://usegalaxy.eu/published/workflow?id=45c5e0a1e10edc54, https://usegalaxy.eu/published/workflow?id=475ea16f943cc013, https://usegalaxy.eu/published/workflow?id=4cb25c0bb103f54f, https://usegalaxy.eu/published/workflow?id=4d32b1b3ac0a7161, https://usegalaxy.eu/published/workflow?id=4d41ee83fc0040d4, https://usegalaxy.eu/published/workflow?id=4d80a87510b2a54e, https://usegalaxy.eu/published/workflow?id=522500fac247be6f, https://usegalaxy.eu/published/workflow?id=5374daf356516a40, https://usegalaxy.eu/published/workflow?id=5385abe9c2589b69, https://usegalaxy.eu/published/workflow?id=54590ccd11ffbf65, https://usegalaxy.eu/published/workflow?id=55a9fc5d30392777, https://usegalaxy.eu/published/workflow?id=587e4d5ce25f48da, https://usegalaxy.eu/published/workflow?id=5cc732a6b4338bf5, https://usegalaxy.eu/published/workflow?id=5ded4002e684a02c, https://usegalaxy.eu/published/workflow?id=5ed38d8114bcd6f7, https://usegalaxy.eu/published/workflow?id=5fae484cb18b94e2, https://usegalaxy.eu/published/workflow?id=60e0b2a28a900178, https://usegalaxy.eu/published/workflow?id=61fe08fb3d5e83f8, https://usegalaxy.eu/published/workflow?id=6201ec86d380aef1, https://usegalaxy.eu/published/workflow?id=629e57958afed44c, https://usegalaxy.eu/published/workflow?id=63eed9c2e025a723, https://usegalaxy.eu/published/workflow?id=64abcddeb516a712, https://usegalaxy.eu/published/workflow?id=6573f3b1606b7f09, https://usegalaxy.eu/published/workflow?id=66f2a58637054c16, https://usegalaxy.eu/published/workflow?id=6aa2891bd2b41f32, https://usegalaxy.eu/published/workflow?id=6c91fe92ef069d64, https://usegalaxy.eu/published/workflow?id=6e5f0d05c91876c2, https://usegalaxy.eu/published/workflow?id=6ed1016dfdf9f928, https://usegalaxy.eu/published/workflow?id=70ec8b1719e25982, https://usegalaxy.eu/published/workflow?id=71816adecac46e74, https://usegalaxy.eu/published/workflow?id=71c4ec4805f83cd5, https://usegalaxy.eu/published/workflow?id=7337d15d121596da, https://usegalaxy.eu/published/workflow?id=73dc2384535bf6af, https://usegalaxy.eu/published/workflow?id=7582a48054c44d6e, https://usegalaxy.eu/published/workflow?id=76d3408d0d22ad05, https://usegalaxy.eu/published/workflow?id=79eb28066236e836, https://usegalaxy.eu/published/workflow?id=7b7d6a5c6c65d74b, https://usegalaxy.eu/published/workflow?id=7c80cd57b2de54d4, https://usegalaxy.eu/published/workflow?id=7ea91d562a02eb2f, https://usegalaxy.eu/published/workflow?id=7ef7b460143211df, https://usegalaxy.eu/published/workflow?id=7f76e43f19b27b22, https://usegalaxy.eu/published/workflow?id=843c10c447496280, https://usegalaxy.eu/published/workflow?id=86900be4282d4b1d, https://usegalaxy.eu/published/workflow?id=88f5cef7e4146520, https://usegalaxy.eu/published/workflow?id=895b8f5736bb92bb, https://usegalaxy.eu/published/workflow?id=8a248dda0131e8ad, https://usegalaxy.eu/published/workflow?id=8c4331f1bac67aba, https://usegalaxy.eu/published/workflow?id=8d00a8b70b0c019c, https://usegalaxy.eu/published/workflow?id=8e997deae5a382c4, https://usegalaxy.eu/published/workflow?id=8ef3379dded2490a, https://usegalaxy.eu/published/workflow?id=8f9dc5ba61a02815, https://usegalaxy.eu/published/workflow?id=8ff9d3ad20e87819, https://usegalaxy.eu/published/workflow?id=9155ed0e7a6a7b60, https://usegalaxy.eu/published/workflow?id=933ab5e7fe13a8e0, https://usegalaxy.eu/published/workflow?id=98bfad0c684011e9, https://usegalaxy.eu/published/workflow?id=9a8b5e99ca9500e3, https://usegalaxy.eu/published/workflow?id=9aa290ce1927d700, https://usegalaxy.eu/published/workflow?id=9c5a0596956064a6, https://usegalaxy.eu/published/workflow?id=9e4df2893767591a, https://usegalaxy.eu/published/workflow?id=9eb29cc96d8d75c2, https://usegalaxy.eu/published/workflow?id=a018307be3563f28, https://usegalaxy.eu/published/workflow?id=a15dabcadb63b46d, https://usegalaxy.eu/published/workflow?id=a2c46deea34d9d80, https://usegalaxy.eu/published/workflow?id=a639ea0419de1078, https://usegalaxy.eu/published/workflow?id=a705370bc2c13d5c, https://usegalaxy.eu/published/workflow?id=a824cfdee241177f, https://usegalaxy.eu/published/workflow?id=abd1cb3457338eb5, https://usegalaxy.eu/published/workflow?id=ac6eb99f70d35999, https://usegalaxy.eu/published/workflow?id=ae16643c04ad1216, https://usegalaxy.eu/published/workflow?id=af30010868c97316, https://usegalaxy.eu/published/workflow?id=af472984b3f3d65f, https://usegalaxy.eu/published/workflow?id=b06f5729d6d68794, https://usegalaxy.eu/published/workflow?id=b14845359b702444, https://usegalaxy.eu/published/workflow?id=b4642b1e0985f76b, https://usegalaxy.eu/published/workflow?id=b4ed2a3690da0196, https://usegalaxy.eu/published/workflow?id=b57c3522bdd7c2d5, https://usegalaxy.eu/published/workflow?id=b6bb29169160a713, https://usegalaxy.eu/published/workflow?id=b8fc492025ad6ff0, https://usegalaxy.eu/published/workflow?id=bc32937d505135ab, https://usegalaxy.eu/published/workflow?id=bee2a7669a7dea5b, https://usegalaxy.eu/published/workflow?id=c02ff9e97ce796c6, https://usegalaxy.eu/published/workflow?id=c084c2009f6b2d0a, https://usegalaxy.eu/published/workflow?id=c1e26abe61c69688, https://usegalaxy.eu/published/workflow?id=c789ab71876c6ead, https://usegalaxy.eu/published/workflow?id=c832ecfa83bcda14, https://usegalaxy.eu/published/workflow?id=c8bc4af6dd3b5d02, https://usegalaxy.eu/published/workflow?id=c9f83ce86d407902, https://usegalaxy.eu/published/workflow?id=cb2df493f5e334f7, https://usegalaxy.eu/published/workflow?id=cc385bd4376a907c, https://usegalaxy.eu/published/workflow?id=cd25f70f71683ab6, https://usegalaxy.eu/published/workflow?id=cdc8e12dea66774c, https://usegalaxy.eu/published/workflow?id=cdf2f02428f5f83f, https://usegalaxy.eu/published/workflow?id=ce1712139b4a4273, https://usegalaxy.eu/published/workflow?id=ce21961260fe4351, https://usegalaxy.eu/published/workflow?id=cf0159c14418525e, https://usegalaxy.eu/published/workflow?id=d215a2e554fd83bc, https://usegalaxy.eu/published/workflow?id=d52ff93f4ffdd981, https://usegalaxy.eu/published/workflow?id=d87fc6685e47d27d, https://usegalaxy.eu/published/workflow?id=d88145e7475e0b7b, https://usegalaxy.eu/published/workflow?id=d95a3349f38792fc, https://usegalaxy.eu/published/workflow?id=db03a18167f26399, https://usegalaxy.eu/published/workflow?id=e423c80058601e78, https://usegalaxy.eu/published/workflow?id=e532d98f4b368666, https://usegalaxy.eu/published/workflow?id=e66502f92a7d432b, https://usegalaxy.eu/published/workflow?id=e91def3fc9738ebb, https://usegalaxy.eu/published/workflow?id=ea8bb8eefdb4ba7a, https://usegalaxy.eu/published/workflow?id=eb03839cc36048f5, https://usegalaxy.eu/published/workflow?id=ec79f14ab91cd933, https://usegalaxy.eu/published/workflow?id=f6a763951d815944, https://usegalaxy.eu/published/workflow?id=f9b705e53b6d6539, https://usegalaxy.eu/published/workflow?id=fc0b9efa7d2e61e6, https://usegalaxy.eu/published/workflow?id=fc25c1f8c6667c87, https://usegalaxy.eu/published/workflow?id=fde21b5f5c169114, https://usegalaxy.eu/published/workflow?id=ff2fd4a4bb27d859, https://usegalaxy.fr/published/workflow?id=0df61a88d64de252, https://usegalaxy.fr/published/workflow?id=4665d95259c26985, https://usegalaxy.fr/published/workflow?id=798c8ff19825ab2c, https://usegalaxy.fr/published/workflow?id=a3e9062133fdf7c2, https://usegalaxy.fr/published/workflow?id=b168a179d1b456cb, https://usegalaxy.fr/published/workflow?id=bf8ffe72b7ce4570, https://usegalaxy.fr/published/workflow?id=c7be6e229a045fad, https://usegalaxy.fr/published/workflow?id=e96cd8dd62fa0ff8, https://usegalaxy.org.au/published/workflow?id=04c9266c6a863fab, https://usegalaxy.org.au/published/workflow?id=0b0957d7cbab16c0, https://usegalaxy.org.au/published/workflow?id=0e11619979c2830c, https://usegalaxy.org.au/published/workflow?id=0f71c97671bb401f, https://usegalaxy.org.au/published/workflow?id=1764bb1f506212e8, https://usegalaxy.org.au/published/workflow?id=1782d699b0166725, https://usegalaxy.org.au/published/workflow?id=244ea5e94237ebad, https://usegalaxy.org.au/published/workflow?id=25d52afddaa3451b, https://usegalaxy.org.au/published/workflow?id=2955ea7be1cdda29, https://usegalaxy.org.au/published/workflow?id=2b71eb1dc2aa28a1, https://usegalaxy.org.au/published/workflow?id=2d45d7138d8715b4, https://usegalaxy.org.au/published/workflow?id=2df1d32f78974528, https://usegalaxy.org.au/published/workflow?id=2fee25e188531691, https://usegalaxy.org.au/published/workflow?id=36f54eda8568355d, https://usegalaxy.org.au/published/workflow?id=434127690544d0e9, https://usegalaxy.org.au/published/workflow?id=446ba22c3d2f3367, https://usegalaxy.org.au/published/workflow?id=479c6b0a96ea1610, https://usegalaxy.org.au/published/workflow?id=499245b3a113e06d, https://usegalaxy.org.au/published/workflow?id=4b681937a01df465, https://usegalaxy.org.au/published/workflow?id=4cbc70a37a9da088, https://usegalaxy.org.au/published/workflow?id=518d27f68e05a356, https://usegalaxy.org.au/published/workflow?id=51b745f8c964e5c6, https://usegalaxy.org.au/published/workflow?id=51bad198f1fd1215, https://usegalaxy.org.au/published/workflow?id=5550585ffc3d8d0e, https://usegalaxy.org.au/published/workflow?id=5a975438c8752269, https://usegalaxy.org.au/published/workflow?id=5b0c0e34394afed1, https://usegalaxy.org.au/published/workflow?id=5cd7f1824db7a960, https://usegalaxy.org.au/published/workflow?id=61a21c9928182ae4, https://usegalaxy.org.au/published/workflow?id=62548740196799c3, https://usegalaxy.org.au/published/workflow?id=66e530368fd40abd, https://usegalaxy.org.au/published/workflow?id=6795e545b0cafded, https://usegalaxy.org.au/published/workflow?id=69d91340fc7effa2, https://usegalaxy.org.au/published/workflow?id=6c1c11a81a2ab1b8, https://usegalaxy.org.au/published/workflow?id=6c27019d03dd49d8, https://usegalaxy.org.au/published/workflow?id=76a0a3af8de11622, https://usegalaxy.org.au/published/workflow?id=76bb6bde19975e05, https://usegalaxy.org.au/published/workflow?id=7a0b3968968c5994, https://usegalaxy.org.au/published/workflow?id=7cc2b5010c56f117, https://usegalaxy.org.au/published/workflow?id=800d28ec61b15244, https://usegalaxy.org.au/published/workflow?id=803ef29108e36e58, https://usegalaxy.org.au/published/workflow?id=851552cc3e830253, https://usegalaxy.org.au/published/workflow?id=857e482acfcb2dba, https://usegalaxy.org.au/published/workflow?id=8e2b94c6fbf44368, https://usegalaxy.org.au/published/workflow?id=8e8a5cce9f3f2f67, https://usegalaxy.org.au/published/workflow?id=9016b2be61f89053, https://usegalaxy.org.au/published/workflow?id=902e270d424f0e8c, https://usegalaxy.org.au/published/workflow?id=9281258aefd17c0c, https://usegalaxy.org.au/published/workflow?id=9365a7de314c9f85, https://usegalaxy.org.au/published/workflow?id=989eb73372135796, https://usegalaxy.org.au/published/workflow?id=9c60b83feaa22415, https://usegalaxy.org.au/published/workflow?id=9e0bae0505ee7c07, https://usegalaxy.org.au/published/workflow?id=a52609119b30e64d, https://usegalaxy.org.au/published/workflow?id=a77ce877e786d44a, https://usegalaxy.org.au/published/workflow?id=b0614274c66efa95, https://usegalaxy.org.au/published/workflow?id=b59fada651043735, https://usegalaxy.org.au/published/workflow?id=b601f48ecec15bf4, https://usegalaxy.org.au/published/workflow?id=b60922a253df6654, https://usegalaxy.org.au/published/workflow?id=b808cd1c0090b068, https://usegalaxy.org.au/published/workflow?id=b920b02a23f94d11, https://usegalaxy.org.au/published/workflow?id=b9e82e3fae56d8b4, https://usegalaxy.org.au/published/workflow?id=c38b998d3e90c329, https://usegalaxy.org.au/published/workflow?id=c4d23297f6fbf5f3, https://usegalaxy.org.au/published/workflow?id=c7f2d6490128dc3c, https://usegalaxy.org.au/published/workflow?id=cb6f49d4ebfa0891, https://usegalaxy.org.au/published/workflow?id=cf775b8ff0745456, https://usegalaxy.org.au/published/workflow?id=d0d6743450e5060d, https://usegalaxy.org.au/published/workflow?id=d298edda13b382e7, https://usegalaxy.org.au/published/workflow?id=d62b6717202f42c9, https://usegalaxy.org.au/published/workflow?id=d7f3fc810261e419, https://usegalaxy.org.au/published/workflow?id=df4e186069552649, https://usegalaxy.org.au/published/workflow?id=e154a9b605ea0886, https://usegalaxy.org.au/published/workflow?id=e6552643a3713b50, https://usegalaxy.org.au/published/workflow?id=ebd1ee73906fdea0, https://usegalaxy.org.au/published/workflow?id=eda40b58616a0fe4, https://usegalaxy.org.au/published/workflow?id=f65b54fcffaa11e5, https://usegalaxy.org.au/published/workflow?id=fbc732db2a2821b0, https://usegalaxy.org.au/published/workflow?id=fc3c83b11f527977, https://usegalaxy.org/published/workflow?id=005924662f68a480, https://usegalaxy.org/published/workflow?id=019be65613876562, https://usegalaxy.org/published/workflow?id=0392de36b6f55a8f, https://usegalaxy.org/published/workflow?id=0596162a499b4074, https://usegalaxy.org/published/workflow?id=05ef809e2b11154c, https://usegalaxy.org/published/workflow?id=0775d8efad0dac10, https://usegalaxy.org/published/workflow?id=07e761b2501971c6, https://usegalaxy.org/published/workflow?id=0993daadf2db5f51, https://usegalaxy.org/published/workflow?id=0b85fb10ed25d34e, https://usegalaxy.org/published/workflow?id=0dec1b9dbbb2f425, https://usegalaxy.org/published/workflow?id=1245e9435cbc3985, https://usegalaxy.org/published/workflow?id=1388fe5d8b50bc7c, https://usegalaxy.org/published/workflow?id=13d9db3715f32b37, https://usegalaxy.org/published/workflow?id=1518c8c50747a1c1, https://usegalaxy.org/published/workflow?id=16910402667eec78, https://usegalaxy.org/published/workflow?id=170287dcfb9de475, https://usegalaxy.org/published/workflow?id=183254b3565bcb04, https://usegalaxy.org/published/workflow?id=19ce6cf93298e268, https://usegalaxy.org/published/workflow?id=1c5a7196a442dd02, https://usegalaxy.org/published/workflow?id=1e264fc06d87899f, https://usegalaxy.org/published/workflow?id=1f98df1adba71b98, https://usegalaxy.org/published/workflow?id=226b506d1fc30e96, https://usegalaxy.org/published/workflow?id=23212ae74fc2d2b5, https://usegalaxy.org/published/workflow?id=23468eea382e6bb4, https://usegalaxy.org/published/workflow?id=25a9f0693ff6d327, https://usegalaxy.org/published/workflow?id=25b8b5af30042d76, https://usegalaxy.org/published/workflow?id=28b2550248a54d74, https://usegalaxy.org/published/workflow?id=2967ef82911f2cca, https://usegalaxy.org/published/workflow?id=29ba77708cdafe0f, https://usegalaxy.org/published/workflow?id=2b09f3c9465ee054, https://usegalaxy.org/published/workflow?id=2b6245843e632c05, https://usegalaxy.org/published/workflow?id=2b820beaeb49dd64, https://usegalaxy.org/published/workflow?id=2d3063882d8239ff, https://usegalaxy.org/published/workflow?id=2dceaa255cc8cf83, https://usegalaxy.org/published/workflow?id=305eafecadfa8815, https://usegalaxy.org/published/workflow?id=307d19833ffb5395, https://usegalaxy.org/published/workflow?id=31cc891be77cbc6f, https://usegalaxy.org/published/workflow?id=31ed5a2bcc8da51a, https://usegalaxy.org/published/workflow?id=3324b82d4efa1a68, https://usegalaxy.org/published/workflow?id=357225c624e796b5, https://usegalaxy.org/published/workflow?id=36c885b0bc829da3, https://usegalaxy.org/published/workflow?id=375f5142c207a768, https://usegalaxy.org/published/workflow?id=38911ba6f66d80f6, https://usegalaxy.org/published/workflow?id=3c1e2bbb1a77cc30, https://usegalaxy.org/published/workflow?id=3d7a9694bcee6db5, https://usegalaxy.org/published/workflow?id=3e703abaeb870f6f, https://usegalaxy.org/published/workflow?id=3ef08553982f6ffc, https://usegalaxy.org/published/workflow?id=3fdd7a7907233d58, https://usegalaxy.org/published/workflow?id=405dc14eb02ff234, https://usegalaxy.org/published/workflow?id=408c799822cbf6ea, https://usegalaxy.org/published/workflow?id=42331381df05b956, https://usegalaxy.org/published/workflow?id=435f0340bf00c940, https://usegalaxy.org/published/workflow?id=438761debd08a9be, https://usegalaxy.org/published/workflow?id=442a2868873e7f77, https://usegalaxy.org/published/workflow?id=44bcae0e352563f9, https://usegalaxy.org/published/workflow?id=450c2181f89e6b23, https://usegalaxy.org/published/workflow?id=462a1176b48eef4a, https://usegalaxy.org/published/workflow?id=46894456a9bec601, https://usegalaxy.org/published/workflow?id=4b92dfd20d48d479, https://usegalaxy.org/published/workflow?id=4ba61941f31f0215, https://usegalaxy.org/published/workflow?id=4f6e8ff94ca4f164, https://usegalaxy.org/published/workflow?id=4ffdb2cf21759d26, https://usegalaxy.org/published/workflow?id=507c817755b2410d, https://usegalaxy.org/published/workflow?id=524602abe59b18f7, https://usegalaxy.org/published/workflow?id=5361db01e3b6cc0c, https://usegalaxy.org/published/workflow?id=5415e85a86898e41, https://usegalaxy.org/published/workflow?id=56427a9b9c3848bf, https://usegalaxy.org/published/workflow?id=574e42683dc3961b, https://usegalaxy.org/published/workflow?id=5834e562fa403732, https://usegalaxy.org/published/workflow?id=5aa4b9131c31cb79, https://usegalaxy.org/published/workflow?id=5b540de61a70df64, https://usegalaxy.org/published/workflow?id=5bcd1aade71a8035, https://usegalaxy.org/published/workflow?id=5bd6d7af64192b86, https://usegalaxy.org/published/workflow?id=5c85cd8c56b9f6ab, https://usegalaxy.org/published/workflow?id=5cd56232e873beab, https://usegalaxy.org/published/workflow?id=5dfec2a3ae5fa765, https://usegalaxy.org/published/workflow?id=612452c925d723b7, https://usegalaxy.org/published/workflow?id=626260e3c3ee5c08, https://usegalaxy.org/published/workflow?id=63b0ce2faec558d5, https://usegalaxy.org/published/workflow?id=65f3a5772ae05a7a, https://usegalaxy.org/published/workflow?id=672ca09dce4b0dc3, https://usegalaxy.org/published/workflow?id=68b995393b3142ec, https://usegalaxy.org/published/workflow?id=68be9cfc0c58cb44, https://usegalaxy.org/published/workflow?id=6960b8f6c98a9b9e, https://usegalaxy.org/published/workflow?id=6a2dace98986992a, https://usegalaxy.org/published/workflow?id=6ba03802169c0063, https://usegalaxy.org/published/workflow?id=6c2bb2209aad5e44, https://usegalaxy.org/published/workflow?id=6d778eeb176d563c, https://usegalaxy.org/published/workflow?id=6dcb43f86b9cd7dc, https://usegalaxy.org/published/workflow?id=6f2e4b4860413153, https://usegalaxy.org/published/workflow?id=7090bb14a7af15bd, https://usegalaxy.org/published/workflow?id=7185085cbe953cd9, https://usegalaxy.org/published/workflow?id=768cee70d9aa8cc6, https://usegalaxy.org/published/workflow?id=769ec5a187095b38, https://usegalaxy.org/published/workflow?id=78249d353038002b, https://usegalaxy.org/published/workflow?id=79527e2b83fd5c64, https://usegalaxy.org/published/workflow?id=7a23e64dfa6957ce, https://usegalaxy.org/published/workflow?id=7a4d834e794407d9, https://usegalaxy.org/published/workflow?id=7af656b8ea5e7e2e, https://usegalaxy.org/published/workflow?id=7b20a62d69d53efc, https://usegalaxy.org/published/workflow?id=7d6617b8316cee19, https://usegalaxy.org/published/workflow?id=7e56bee496344ddc, https://usegalaxy.org/published/workflow?id=8182055f5ef561f3, https://usegalaxy.org/published/workflow?id=81f1f0fd6d9235fd, https://usegalaxy.org/published/workflow?id=82973143b28bb767, https://usegalaxy.org/published/workflow?id=85e2a1d6b1d4e3d7, https://usegalaxy.org/published/workflow?id=870f4988a5cc815e, https://usegalaxy.org/published/workflow?id=87ebf1b5956a61b5, https://usegalaxy.org/published/workflow?id=889b394b38b259eb, https://usegalaxy.org/published/workflow?id=8a01c78688beae1d, https://usegalaxy.org/published/workflow?id=8a15bda6ce7a63ec, https://usegalaxy.org/published/workflow?id=8ae311282a0d27a1, https://usegalaxy.org/published/workflow?id=8cf06b14037a8d5a, https://usegalaxy.org/published/workflow?id=8cfbaa14cff5a633, https://usegalaxy.org/published/workflow?id=8d8e8927d63803ef, https://usegalaxy.org/published/workflow?id=8db9ccf14567d9ba, https://usegalaxy.org/published/workflow?id=9057e2e000a7ef02, https://usegalaxy.org/published/workflow?id=90f5b512997c70f8, https://usegalaxy.org/published/workflow?id=918863756ce93725, https://usegalaxy.org/published/workflow?id=9192807702bc3de2, https://usegalaxy.org/published/workflow?id=91ed290805f590de, https://usegalaxy.org/published/workflow?id=931dd3e6b1fae4f5, https://usegalaxy.org/published/workflow?id=958b64b05011d8c0, https://usegalaxy.org/published/workflow?id=962f784745c1b740, https://usegalaxy.org/published/workflow?id=97263f3308077ff0, https://usegalaxy.org/published/workflow?id=97dcd7285ebd5817, https://usegalaxy.org/published/workflow?id=9b384b774485b2f2, https://usegalaxy.org/published/workflow?id=9e1762e46ddf9a85, https://usegalaxy.org/published/workflow?id=9ecfaa613a112d78, https://usegalaxy.org/published/workflow?id=a124d41da896779c, https://usegalaxy.org/published/workflow?id=a2b4a868fa9795d1, https://usegalaxy.org/published/workflow?id=a3ff7dbfadbd96e2, https://usegalaxy.org/published/workflow?id=a5bdab0b219b3797, https://usegalaxy.org/published/workflow?id=a8b9252fad5fe06a, https://usegalaxy.org/published/workflow?id=aadccbe72752c129, https://usegalaxy.org/published/workflow?id=ab490af27c9ccc80, https://usegalaxy.org/published/workflow?id=ad19db6504b6dc33, https://usegalaxy.org/published/workflow?id=adca3f2ca63730fe, https://usegalaxy.org/published/workflow?id=affdc1bf42475cc9, https://usegalaxy.org/published/workflow?id=b0f85c802c1ea7f8, https://usegalaxy.org/published/workflow?id=b1b4fc510099d592, https://usegalaxy.org/published/workflow?id=b4f7109ac83ce199, https://usegalaxy.org/published/workflow?id=b76c55dafd44b305, https://usegalaxy.org/published/workflow?id=b7b69aaee5202144, https://usegalaxy.org/published/workflow?id=b7ec8d79dc563a93, https://usegalaxy.org/published/workflow?id=b8ed069eea7879e7, https://usegalaxy.org/published/workflow?id=b93a475af82a3d36, https://usegalaxy.org/published/workflow?id=bc01b8b203ecc754, https://usegalaxy.org/published/workflow?id=bd6bfd338ffb9637, https://usegalaxy.org/published/workflow?id=be46c5bb8c06a470, https://usegalaxy.org/published/workflow?id=be54e57345ce7ca5, https://usegalaxy.org/published/workflow?id=bf79271a438ffa54, https://usegalaxy.org/published/workflow?id=bfd2e7e63d3e6856, https://usegalaxy.org/published/workflow?id=c07476a937b4e52e, https://usegalaxy.org/published/workflow?id=c478d8de43a3f30f, https://usegalaxy.org/published/workflow?id=c5f4b7b2463f338b, https://usegalaxy.org/published/workflow?id=c66e2738f37a8c16, https://usegalaxy.org/published/workflow?id=c75acc1ab44c121f, https://usegalaxy.org/published/workflow?id=c9474fcce2a21188, https://usegalaxy.org/published/workflow?id=cade0c5c11978323, https://usegalaxy.org/published/workflow?id=cb810cdaa4915f4b, https://usegalaxy.org/published/workflow?id=cfa7c3d7e69e91d7, https://usegalaxy.org/published/workflow?id=d02b4d7483936b73, https://usegalaxy.org/published/workflow?id=d136d24e4c96962a, https://usegalaxy.org/published/workflow?id=d2dec03b33af1b2f, https://usegalaxy.org/published/workflow?id=d341660f3d1ce8bf, https://usegalaxy.org/published/workflow?id=d6cf3be79a4b7db4, https://usegalaxy.org/published/workflow?id=daaded719dcfd53b, https://usegalaxy.org/published/workflow?id=dcbc71347300822d, https://usegalaxy.org/published/workflow?id=dcc7c5fdef8780fd, https://usegalaxy.org/published/workflow?id=deea71ccac30c7ea, https://usegalaxy.org/published/workflow?id=e12324f5e3b930fd, https://usegalaxy.org/published/workflow?id=e31abcc04c5c69bc, https://usegalaxy.org/published/workflow?id=e325b97b81b10edb, https://usegalaxy.org/published/workflow?id=e3a30c0583183c1e, https://usegalaxy.org/published/workflow?id=e500078649dd026c, https://usegalaxy.org/published/workflow?id=e50e36a25bae863c, https://usegalaxy.org/published/workflow?id=e53b695ff681b675, https://usegalaxy.org/published/workflow?id=e817b5b275b4952f, https://usegalaxy.org/published/workflow?id=e9aaa56af9d230d6, https://usegalaxy.org/published/workflow?id=eab7347464872b4c, https://usegalaxy.org/published/workflow?id=eae5ae951abe6761, https://usegalaxy.org/published/workflow?id=ebe7f93204402a5a, https://usegalaxy.org/published/workflow?id=ef6036efe8a03a12, https://usegalaxy.org/published/workflow?id=f09033420c6267ab, https://usegalaxy.org/published/workflow?id=f18e6fa5270fcd37, https://usegalaxy.org/published/workflow?id=f5200b7bcceed5d6, https://usegalaxy.org/published/workflow?id=f58aa85ceaa19534, https://usegalaxy.org/published/workflow?id=f58c90061c31bd48, https://usegalaxy.org/published/workflow?id=f794b4b9bb990c80, https://usegalaxy.org/published/workflow?id=f7a3567ba6b57c9c, https://usegalaxy.org/published/workflow?id=f7d1c6be4e4c3357, https://usegalaxy.org/published/workflow?id=f85999e42bfef5b9, https://usegalaxy.org/published/workflow?id=f8d85cda81baa77d, https://usegalaxy.org/published/workflow?id=f8ed1ae9d501bb87, https://usegalaxy.org/published/workflow?id=fda29ba2b6c98f8b, https://usegalaxy.org/published/workflow?id=ff3ade25b35f4893, https://usegalaxy.org/published/workflow?id=ffae9c47980a5170, https://usegalaxy.org/published/workflow?id=fff1a5c7475b3eeb, https://workflowhub.eu/workflows/1057?version=8, https://workflowhub.eu/workflows/1060?version=1, https://workflowhub.eu/workflows/1061?version=1, https://workflowhub.eu/workflows/1063?version=5, https://workflowhub.eu/workflows/1096?version=2, https://workflowhub.eu/workflows/109?version=9, https://workflowhub.eu/workflows/1103?version=3, https://workflowhub.eu/workflows/1104?version=2, https://workflowhub.eu/workflows/1114?version=1, https://workflowhub.eu/workflows/1189?version=2, https://workflowhub.eu/workflows/1190?version=1, https://workflowhub.eu/workflows/1218?version=1, https://workflowhub.eu/workflows/1260?version=2, https://workflowhub.eu/workflows/1275?version=2, https://workflowhub.eu/workflows/138?version=9, https://workflowhub.eu/workflows/1391?version=1, https://workflowhub.eu/workflows/1410?version=1, https://workflowhub.eu/workflows/1418?version=1, https://workflowhub.eu/workflows/1425?version=1, https://workflowhub.eu/workflows/1464?version=1, https://workflowhub.eu/workflows/1479?version=1, https://workflowhub.eu/workflows/1487?version=2, https://workflowhub.eu/workflows/1492?version=2, https://workflowhub.eu/workflows/1512?version=1, https://workflowhub.eu/workflows/1517?version=1, https://workflowhub.eu/workflows/1518?version=1, https://workflowhub.eu/workflows/1540?version=1, https://workflowhub.eu/workflows/1558?version=1, https://workflowhub.eu/workflows/1571?version=1, https://workflowhub.eu/workflows/1607?version=1, https://workflowhub.eu/workflows/1612?version=1, https://workflowhub.eu/workflows/1616?version=1, https://workflowhub.eu/workflows/1628?version=1, https://workflowhub.eu/workflows/1638?version=1, https://workflowhub.eu/workflows/1641?version=1, https://workflowhub.eu/workflows/1656?version=1, https://workflowhub.eu/workflows/1658?version=1, https://workflowhub.eu/workflows/1793?version=1, https://workflowhub.eu/workflows/246?version=4, https://workflowhub.eu/workflows/248?version=4, https://workflowhub.eu/workflows/354?version=1, https://workflowhub.eu/workflows/356?version=1, https://workflowhub.eu/workflows/358?version=1, https://workflowhub.eu/workflows/470?version=1, https://workflowhub.eu/workflows/513?version=3, https://workflowhub.eu/workflows/519?version=1, https://workflowhub.eu/workflows/561?version=11, https://workflowhub.eu/workflows/601?version=2, https://workflowhub.eu/workflows/602?version=2, https://workflowhub.eu/workflows/607?version=1, https://workflowhub.eu/workflows/628?version=1, https://workflowhub.eu/workflows/629?version=1, https://workflowhub.eu/workflows/697?version=1 |
assembly/ERGA-post-assembly-QC, assembly/assembly-with-preprocessing, assembly/ecoli_comparison, assembly/vgp_genome_assembly, computational-chemistry/cheminformatics, computational-chemistry/covid19-docking, ecology/phylogeny-data-prep, evolution/mtb_transmission, galaxy-interface/collections, galaxy-interface/workflow-automation, genome-annotation/gene-centric, genome-annotation/secondary-metabolite-discovery, imaging/hela-screen-analysis, imaging/parameter-tuning, introduction/galaxy-intro-ngs-data-managment, microbiome/clinical-mp-3-verification, microbiome/mothur-miseq-sop-short, microbiome/pathogen-detection-from-nanopore-foodborne-data, proteomics/clinical-mp-3-verification, proteomics/neoantigen-fragpipe-discovery, single-cell/bulk-deconvolution-evaluate, variant-analysis/aiv-analysis, variant-analysis/baculovirus-isolate-variation |
|
color_deconvolution |
ip_color_deconvolution |
Color-deconvolution methods |
2024-09-30 |
https://github.com/bmcv |
0.9 |
scikit-image |
|
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/color_deconvolution/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/color_deconvolution |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
4 |
5 |
44 |
45 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
45 |
44 |
5 |
4 |
https://usegalaxy.eu/published/workflow?id=035f85c1615e0b7b |
|
|
colorize_labels |
colorize_labels |
Colorize label map |
2024-03-12 |
https://github.com/bmcv |
3.2.1 |
networkx |
|
To update |
Imaging |
|
|
|
|
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/colorize_labels |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/colorize_labels |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
5 |
62 |
62 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
62 |
62 |
5 |
5 |
https://dev.workflowhub.eu/workflows/1364?version=1, https://usegalaxy.eu/published/workflow?id=23030421cd9fcfb2, https://usegalaxy.eu/published/workflow?id=bc78c184fabcff1d, https://workflowhub.eu/workflows/1522?version=1, https://workflowhub.eu/workflows/1730?version=1 |
imaging/voronoi-segmentation |
|
combine_assemblystats |
combine_stats |
Combine multiple Assemblystats datasets into a single tabular report |
2017-11-08 |
https://github.com/phac-nml/galaxy_tools |
1.0 |
perl-getopt-long |
2.58 |
To update |
Assembly |
|
|
|
|
nml |
https://github.com/phac-nml/galaxy_tools |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/combine_assembly_stats |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
combine_json |
combine_json |
JSON collection tool that takes multiple JSON data arrays and combines them into a single JSON array. |
2018-03-02 |
|
0.1 |
|
|
To update |
Sequence Analysis |
|
|
|
|
nml |
|
https://github.com/phac-nml/galaxy_tools/tree/master/tools/combineJSON |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
combine_tabular_collection |
combine |
Combine Tabular Collection into a single file |
2017-02-06 |
|
0.1 |
|
|
To update |
Sequence Analysis |
|
|
|
|
nml |
|
https://github.com/phac-nml/galaxy_tools/tree/master/tools/combine_tabular_collection |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
concat_channels |
ip_concat_channels |
Concatenate images |
2017-10-30 |
https://github.com/bmcv |
0.3-1 |
scikit-image |
|
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/concat_channels/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/concat_channels |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
12 |
13 |
68 |
84 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
84 |
68 |
13 |
12 |
|
|
|
concat_paired |
concat_fastqs |
Concatenate paired datasets |
2019-12-16 |
https://github.com/phac-nml/concat |
0.2 |
|
|
To update |
Text Manipulation |
|
|
|
|
nml |
https://github.com/phac-nml/concat |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/concat_paired |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
coordinates_of_roi |
ip_coordinates_of_roi |
Coordinates of ROI |
2019-01-08 |
https://github.com/bmcv |
0.0.4-2 |
scikit-image |
|
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/coordinates_of_roi/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/coordinates_of_roi |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
11 |
11 |
15589 |
16547 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
16547 |
15589 |
11 |
11 |
https://usegalaxy.eu/published/workflow?id=03e8b0d3dcedc092, https://usegalaxy.eu/published/workflow?id=64bb7a64877034dc |
|
|
correlation_analysis |
correlation_analysis |
[Metabolomics][W4M] Metabolites Correlation Analysis |
2020-12-08 |
http://workflow4metabolomics.org |
1.0.1+galaxy2 |
r-batch |
1.1_4 |
To update |
Metabolomics |
|
|
|
|
workflow4metabolomics |
https://github.com/workflow4metabolomics/tools-metabolomics/blob/master/tools/correlation_analysis/ |
https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/correlation_analysis |
|
|
|
|
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
55 |
55 |
231 |
231 |
231 |
231 |
55 |
55 |
|
|
|
count_objects |
ip_count_objects |
Count Objects |
2019-01-08 |
https://github.com/bmcv |
0.0.5-2 |
scikit-image |
|
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/count_objects/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/count_objects |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
62 |
76 |
300 |
341 |
3 |
3 |
4 |
4 |
7 |
7 |
158 |
158 |
0 |
0 |
0 |
0 |
503 |
462 |
86 |
72 |
https://dev.workflowhub.eu/workflows/1258?version=3, https://usegalaxy.eu/published/workflow?id=1ffacb28226460ac, https://usegalaxy.eu/published/workflow?id=23030421cd9fcfb2, https://usegalaxy.eu/published/workflow?id=6fbd9b2274c62ebe, https://usegalaxy.eu/published/workflow?id=bc78c184fabcff1d, https://usegalaxy.eu/published/workflow?id=dc8b78d093be59ae, https://usegalaxy.org.au/published/workflow?id=2a1e4de0dc77bbed, https://usegalaxy.org.au/published/workflow?id=8e28c3b252062b3b, https://usegalaxy.org/published/workflow?id=a8e39acc103c3d6b, https://usegalaxy.org/published/workflow?id=d47cddc372c88094, https://workflowhub.eu/workflows/1522?version=1, https://workflowhub.eu/workflows/1532?version=1, https://workflowhub.eu/workflows/1730?version=1, https://workflowhub.eu/workflows/771?version=2 |
imaging/imaging-introduction, imaging/voronoi-segmentation |
|
crop_image |
ip_crop_image |
Crop image |
2025-06-06 |
https://github.com/bmcv |
0.4.1 |
giatools |
0.4.1 |
Up-to-date |
Imaging |
|
|
|
|
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/crop_image/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/crop_image |
giatools |
giatools |
Tools required for Galaxy Image Analysis |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
cryptogenotyper |
CryptoGenotyper |
CryptoGenotyper is a standalone tool to *in-silico* determine species and subtype based on SSU rRNA and gp60 markers. |
2020-10-14 |
https://github.com/phac-nml/CryptoGenotyper |
1.0 |
cryptogenotyper |
1.0 |
Up-to-date |
Sequence Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/CryptoGenotyper |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/cryptogenotyper |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
28 |
28 |
11902 |
11902 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
11902 |
11902 |
28 |
28 |
|
|
|
csvtk |
csvtk_awklike_filter, csvtk_awklike_mutate, csvtk_collapse, csvtk_concat, csvtk_convert, csvtk_correlation, csvtk_cut, csvtk_filter, csvtk_freq, csvtk_gather, csvtk_join, csvtk_mutate, csvtk_plot, csvtk_replace, csvtk_sample, csvtk_separate, csvtk_sort, csvtk_split, csvtk_summary, csvtk_uniq |
Rapid data investigation and manipulation of csv/tsv files |
2019-08-23 |
https://bioinf.shenwei.me/csvtk/ |
0.20.0 |
csvtk |
0.31.0 |
To update |
Text Manipulation |
|
|
|
|
nml |
https://github.com/shenwei356/csvtk |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/csvtk |
|
|
|
|
0 |
6 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
20 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
17 |
17 |
124 |
124 |
124 |
124 |
17 |
17 |
|
|
|
curve_fitting |
ip_curve_fitting |
Polynomial curve fitting to data points |
2021-07-22 |
https://github.com/BMCV/galaxy-image-analysis |
0.0.3-2 |
numpy |
|
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/curve_fitting/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/curve_fitting |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
3 |
3 |
29 |
29 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
29 |
29 |
3 |
3 |
https://dev.workflowhub.eu/workflows/1374?version=1, https://usegalaxy.eu/published/workflow?id=ffa80e0637d079f2, https://workflowhub.eu/workflows/1499?version=1 |
imaging/detection-of-mitoflashes |
|
detection_viz |
ip_detection_viz |
Detection Visualization |
2017-10-30 |
https://github.com/bmcv |
0.3-2 |
scikit-image |
|
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/detection_viz/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/detection_viz |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
9 |
9 |
34 |
49 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
49 |
34 |
9 |
9 |
|
|
|
ectyper |
ectyper |
EC-Typer - in silico serotyping of Escherichia coli species |
2018-12-21 |
https://github.com/phac-nml/ecoli_serotyping |
2.0.0 |
ectyper |
2.0.0 |
Up-to-date |
Sequence Analysis |
Sequence assembly, Read pre-processing, Variant calling |
Sequence assembly, Read pre-processing, Variant calling |
Whole genome sequencing, Public health and epidemiology, Sequence assembly, Genotype and phenotype, Workflows |
Whole genome sequencing, Public health and epidemiology, Sequence assembly, Genotype and phenotype, Workflows |
nml |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/ectyper |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/ectyper |
ectyper |
ECTyper |
Ectyper is a standalone serotyping module for Escherichia coli. It supports fasta and fastq file formats. (Galaxy Version 1.0.0) |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
163 |
163 |
16569 |
16569 |
1 |
1 |
10 |
10 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
16579 |
16579 |
164 |
164 |
|
|
|
ete |
ete_gene_csv_finder, ete_genetree_splitter, ete_homology_classifier, ete_init_taxdb, ete_lineage_generator, ete3_mod, ete_species_tree_generator |
Analyse phylogenetic trees using the ETE Toolkit |
2016-06-01 |
https://etetoolkit.org/ |
3.1.3 |
ete3 |
3.1.1 |
To update |
Phylogenetics |
Phylogenetic analysis, Phylogenetic tree editing |
Phylogenetic tree editing |
Phylogenetics |
Phylogenetics |
earlhaminst |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/ete |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/ete |
ete |
ete |
The Environment for Tree Exploration (ETE) is a computational framework that simplifies the reconstruction, analysis, and visualization of phylogenetic trees and multiple sequence alignments. Here, we present ETE v3, featuring numerous improvements in the underlying library of methods, and providing a novel set of standalone tools to perform common tasks in comparative genomics and phylogenetics. The new features include (i) building gene-based and supermatrix-based phylogenies using a single command, (ii) testing and visualizing evolutionary models, (iii) calculating distances between trees of different size or including duplications, and (iv) providing seamless integration with the NCBI taxonomy database. ETE is freely available at http://etetoolkit.org |
|
0 |
0 |
7 |
7 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 |
7 |
0 |
22 |
30 |
674 |
976 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
9 |
9 |
985 |
683 |
32 |
24 |
|
|
|
export_to_cluster |
export_to_cluster |
Export datasets to cluster |
2016-01-18 |
https://github.com/TGAC/earlham-galaxytools/ |
0.1.0 |
python |
|
To update |
Data Export |
|
|
|
|
earlhaminst |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/export_to_cluster/ |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/export_to_cluster |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
fasta2bed |
fasta2bed |
Convert multiple fasta file into tabular bed file format |
2017-10-11 |
https://github.com/phac-nml/galaxy_tools |
1.0.0 |
perl-bioperl |
1.7.8 |
To update |
Sequence Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/galaxy_tools |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/fasta2bed |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
fasta_extract |
fa-extract-sequence |
extract single fasta from multiple fasta file |
2016-10-26 |
https://toolshed.g2.bx.psu.edu/view/nml/fasta_extract |
1.1.0 |
perl-bioperl |
1.7.8 |
To update |
Sequence Analysis |
|
|
|
|
nml |
https://toolshed.g2.bx.psu.edu/view/nml/fasta_extract |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/fasta_extract |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
10 |
0 |
0 |
0 |
0 |
134 |
181 |
1222 |
1827 |
0 |
0 |
0 |
0 |
1837 |
1222 |
182 |
134 |
|
|
|
fastqc_stats |
FastQC_Summary |
Summary multiple FastQC into a single tabular line report |
2017-10-11 |
https://github.com/phac-nml/galaxy_tools |
1.2 |
perl-bioperl |
1.7.8 |
To update |
Sequence Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/galaxy_tools |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/fastqc_stats |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
feelnc2asko |
feelnc2asko |
Convert FeelNC GTF to GFF3 |
2018-04-11 |
https://github.com/tderrien/FEELnc |
0.1 |
perl-bioperl |
1.7.8 |
To update |
Convert Formats |
|
|
|
|
genouest |
https://github.com/genouest/galaxy-tools/tree/master/tools/feelnc2asko |
https://github.com/genouest/galaxy-tools/tree/master/tools/feelnc2asko |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
feht |
feht |
Automatically identify makers predictive of groups. |
2017-10-11 |
https://github.com/phac-nml/galaxy_tools |
0.1.0 |
feht |
1.1.0 |
To update |
Sequence Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/galaxy_tools |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/feht |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
filter_spades_repeats |
filter_spades_repeat |
Remove short and repeat contigs/scaffolds |
2017-10-12 |
https://github.com/phac-nml/galaxy_tools/ |
1.0.1 |
perl-bioperl |
1.7.8 |
To update |
Assembly |
|
|
|
|
nml |
https://github.com/phac-nml/galaxy_tools/ |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/filter_spades_repeats |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
gafa |
gafa |
Gene Align and Family Aggregator |
2016-12-15 |
https://github.com/TGAC/Aequatus |
0.4.1 |
python |
|
To update |
Visualization |
|
|
|
|
earlhaminst |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/GAFA/ |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/GAFA |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
5 |
6 |
30 |
47 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
47 |
30 |
6 |
5 |
https://usegalaxy.eu/published/workflow?id=2cec6a39cd496f09 |
|
|
gblocks |
gblocks |
Gblocks |
2018-04-11 |
https://www.biologiaevolutiva.org/jcastresana/Gblocks/Gblocks_documentation.html |
0.91b |
gblocks |
0.91b |
Up-to-date |
Sequence Analysis |
|
|
|
|
earlhaminst |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/gblocks |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/gblocks |
|
|
|
|
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
80 |
80 |
561 |
561 |
4 |
4 |
19 |
19 |
580 |
580 |
84 |
84 |
|
|
|
gcms2isocor |
gcms2isocor |
Corrective method dedicated to Isocor for calculating carbon isotopologue distribution from GCMS runs |
2023-03-15 |
https://github.com/p2m2/p2m2tools |
0.2.1 |
|
|
To update |
Metabolomics |
|
|
|
|
workflow4metabolomics |
https://github.com/workflow4metabolomics/tools-metabolomics/blob/master/tools/gcms2isocor/ |
https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/gcms2isocor |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
gcms2isocor |
gcms2isocor |
Conversion from GCMS PostRun Analysis to Isocor |
2021-09-16 |
|
0.1.0 |
openjdk |
|
To update |
Metabolomics |
|
|
|
|
genouest |
|
https://github.com/genouest/galaxy-tools/tree/master/tools/gcms2isocor |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
genenotebook |
genenotebook_build |
Galaxy tools allowing to load data into a GeneNoteBook database.https://genenotebook.github.io |
2021-09-17 |
https://genenotebook.github.io |
0.4.18 |
genoboo |
0.4.18 |
Up-to-date |
Web Services |
|
|
|
|
gga |
https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook |
https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook |
|
|
|
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
7 |
7 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
6 |
288 |
288 |
295 |
295 |
9 |
9 |
|
|
|
genform |
genform |
genform: generation of molecular formulas by high-resolution MS and MS/MS data |
2019-09-12 |
https://sourceforge.net/projects/genform/ |
|
genform |
r8 |
To update |
Metabolomics |
|
|
|
|
workflow4metabolomics |
https://github.com/workflow4metabolomics/tools-metabolomics/blob/master/tools/genform/ |
https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/genform |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
3 |
4 |
50 |
68 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
68 |
50 |
4 |
3 |
|
|
|
get_pairs |
get_pairs |
Separate paired and unpaired reads from two fastq files |
2018-09-10 |
|
0.3 |
python |
|
To update |
Fastq Manipulation |
|
|
|
|
genouest |
https://github.com/genouest/galaxy-tools/tree/master/tools/get_pairs |
https://github.com/genouest/galaxy-tools/tree/master/tools/get_pairs |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
getmlst |
getmlst |
Download MLST datasets by species from pubmlst.org |
2015-12-03 |
|
0.1.4.1 |
srst2 |
0.2.0 |
To update |
Sequence Analysis |
|
|
|
|
nml |
|
https://github.com/phac-nml/galaxy_tools/tree/master/tools/getmlst |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
gnali |
gnali |
A tool to find nonessential, loss-of-function gene variants |
2020-03-30 |
https://github.com/phac-nml/gnali/ |
1.1.0 |
gnali |
1.1.0 |
Up-to-date |
Variant Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/gnali/ |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/gnali |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
gstf_preparation |
gstf_preparation |
GeneSeqToFamily preparation converts data for the workflow |
2017-03-15 |
https://github.com/TGAC/earlham-galaxytools/ |
0.4.3 |
python |
|
To update |
Convert Formats |
|
|
|
|
earlhaminst |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/gstf_preparation |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/gstf_preparation |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
17 |
18 |
288 |
401 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
401 |
288 |
18 |
17 |
|
|
|
hcluster_sg |
hcluster_sg |
Hierarchically clustering on a sparse graph |
2015-08-05 |
https://github.com/douglasgscofield/hcluster |
0.5.1.1 |
hcluster_sg |
0.5.1 |
To update |
Phylogenetics |
|
|
|
|
earlhaminst |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/hcluster_sg |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/hcluster_sg |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
54 |
61 |
246 |
287 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
287 |
246 |
61 |
54 |
https://usegalaxy.eu/published/workflow?id=2cec6a39cd496f09 |
|
|
hcluster_sg_parser |
hcluster_sg_parser |
Converts hcluster_sg 3-column output into lists of ids |
2015-08-12 |
https://github.com/TGAC/earlham-galaxytools/ |
0.3.0 |
python |
|
To update |
Phylogenetics |
|
|
|
|
earlhaminst |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/hcluster_sg_parser |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/hcluster_sg_parser |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
21 |
26 |
242 |
297 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
297 |
242 |
26 |
21 |
https://usegalaxy.eu/published/workflow?id=2cec6a39cd496f09 |
|
|
helixer |
helixer |
Gene calling with Deep Neural Networks |
2023-06-14 |
https://github.com/weberlab-hhu/Helixer |
0.3.3 |
|
|
To update |
Genome annotation |
Gene prediction, Genome annotation |
Gene prediction, Genome annotation |
Sequence analysis, Gene transcripts |
Sequence analysis, Gene transcripts |
genouest |
https://github.com/genouest/galaxy-tools/tree/master/tools/helixer |
https://github.com/genouest/galaxy-tools/tree/master/tools/helixer |
helixer |
Helixer |
Deep Learning to predict gene annotations |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
92 |
92 |
461 |
461 |
15 |
15 |
44 |
44 |
43 |
43 |
240 |
240 |
11 |
11 |
268 |
268 |
1013 |
1013 |
161 |
161 |
https://dev.workflowhub.eu/workflows/1358?version=2, https://usegalaxy.eu/published/workflow?id=31bc2a44fb89aa89, https://usegalaxy.eu/published/workflow?id=327beb1edda305ff, https://usegalaxy.eu/published/workflow?id=3d604dad4f1f5b3d, https://usegalaxy.eu/published/workflow?id=4077e77b6af919c4, https://usegalaxy.eu/published/workflow?id=8976041ef89e4548, https://usegalaxy.fr/published/workflow?id=ae05ff8487f58fd6, https://usegalaxy.org.au/published/workflow?id=a9068ea858222e2b, https://usegalaxy.org/published/workflow?id=4605309321799e9b, https://usegalaxy.org/published/workflow?id=f4111a169255535c, https://workflowhub.eu/workflows/1255?version=3, https://workflowhub.eu/workflows/1500?version=1, https://workflowhub.eu/workflows/1746?version=1 |
genome-annotation/comparison-braker-helixer-annotation, genome-annotation/helixer |
|
hivtrace |
hivtrace |
An application that identifies potential transmission clusters within a supplied FASTA file with an option to find potential links against the Los Alamos HIV Sequence Database. |
2015-12-10 |
|
1.0.1 |
hivtrace |
1.5.0 |
To update |
Sequence Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/galaxy_tools/tree/tools/hivtrace |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/hivtrace |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
image_info |
ip_imageinfo |
Extracts image metadata |
2019-07-19 |
https://github.com/bmcv |
5.7.1 |
bftools |
8.0.0 |
To update |
Imaging |
|
|
|
|
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_info/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_info |
|
|
|
python-bioformats |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
88 |
106 |
242 |
667 |
0 |
0 |
0 |
0 |
16 |
16 |
180 |
180 |
0 |
0 |
0 |
0 |
847 |
422 |
122 |
104 |
https://dev.workflowhub.eu/workflows/1258?version=3, https://usegalaxy.org.au/published/workflow?id=2a1e4de0dc77bbed, https://workflowhub.eu/workflows/1532?version=1 |
imaging/imaging-introduction, imaging/voronoi-segmentation |
|
image_math |
image_math |
Process images using arithmetic expressions |
2024-03-09 |
https://github.com/bmcv |
1.26.4 |
numpy |
|
To update |
Imaging |
|
|
|
|
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
74 |
74 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
74 |
74 |
3 |
3 |
https://usegalaxy.eu/published/workflow?id=23030421cd9fcfb2, https://usegalaxy.eu/published/workflow?id=bc78c184fabcff1d, https://workflowhub.eu/workflows/1522?version=1, https://workflowhub.eu/workflows/1526?version=1, https://workflowhub.eu/workflows/1730?version=1 |
imaging/process-image-bioimageio, imaging/voronoi-segmentation |
|
image_registration_affine |
ip_image_registration |
Intensity-based Image Registration |
2020-12-29 |
https://github.com/bmcv |
0.0.3-2 |
scikit-image |
|
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_registration_affine/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_registration_affine |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
5 |
5 |
16 |
16 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
16 |
16 |
5 |
5 |
|
|
|
imagecoordinates_flipaxis |
imagecoordinates_flipaxis |
Flip coordinate axes |
2019-03-08 |
https://github.com/bmcv |
0.1-2 |
pandas |
|
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/imagecoordinates_flipaxis/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/imagecoordinates_flipaxis |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
10 |
12 |
20930 |
21850 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
21850 |
20930 |
12 |
10 |
https://usegalaxy.eu/published/workflow?id=03e8b0d3dcedc092, https://usegalaxy.eu/published/workflow?id=64bb7a64877034dc |
|
|
influx_si |
influx_si |
metabolic flux estimation based on [in]stationary labeling |
2020-04-17 |
https://github.com/sgsokol/influx |
7.0.1 |
influx_si |
7.3.0 |
To update |
Metabolomics |
|
|
|
|
workflow4metabolomics |
https://github.com/workflow4metabolomics/tools-metabolomics/blob/master/tools/influx_si/ |
https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/influx_si |
|
|
|
|
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
18 |
18 |
18 |
18 |
2 |
2 |
https://usegalaxy.fr/published/workflow?id=7ae6ad6f74a50fac |
|
|
influx_si_data_manager |
influx_data_manager |
Handling influx_si data inputs in Galaxy workflows |
2024-02-09 |
https://github.com/MetaboHUB-MetaToul-FluxoMet/tools_w4m/ |
1.0.2 |
influx-si-data-manager |
1.1.1 |
To update |
Metabolomics |
|
|
|
|
workflow4metabolomics |
https://github.com/MetaboHUB-MetaToul-FluxoMet/tools_w4m/tree/main/tools/influx_data_manager |
https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/influx_data_manager |
|
|
|
|
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
9 |
9 |
9 |
9 |
1 |
1 |
https://usegalaxy.fr/published/workflow?id=7ae6ad6f74a50fac |
|
|
intensity_checks |
intens_check |
Statistical measures, number of missing values and mean fold change for metabolomics data. |
2025-05-14 |
https://workflow4metabolomics.org/ |
2.0.1 |
r-base |
|
To update |
Metabolomics |
|
|
|
|
melpetera |
https://github.com/workflow4metabolomics/tools-metabolomics |
https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/intensity_check |
|
|
|
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
39 |
39 |
153 |
153 |
15 |
15 |
54 |
54 |
0 |
0 |
0 |
0 |
339 |
339 |
7650 |
7659 |
7866 |
7857 |
393 |
393 |
https://usegalaxy.eu/published/workflow?id=3e2718f1ba1a22be, https://usegalaxy.fr/published/workflow?id=15275ba7c23028ed, https://usegalaxy.fr/published/workflow?id=180744a2f8dca6eb, https://usegalaxy.fr/published/workflow?id=18b2f77f2915adc7, https://usegalaxy.fr/published/workflow?id=26a3e5741d66982a, https://usegalaxy.fr/published/workflow?id=26bdb32c017d798c, https://usegalaxy.fr/published/workflow?id=3c41c4c5a6332c25, https://usegalaxy.fr/published/workflow?id=49e59327f299e9f7, https://usegalaxy.fr/published/workflow?id=57748aa2cecf0405, https://usegalaxy.fr/published/workflow?id=5964606a3836cbdf, https://usegalaxy.fr/published/workflow?id=5bfbe77fd6b37c45, https://usegalaxy.fr/published/workflow?id=6895bf9cff915ba1, https://usegalaxy.fr/published/workflow?id=7a790b0acf8ba14d, https://usegalaxy.fr/published/workflow?id=7cc77d6cdd8de027, https://usegalaxy.fr/published/workflow?id=7e9dcb13f95f9567, https://usegalaxy.fr/published/workflow?id=bb69fa998b900cb8, https://usegalaxy.fr/published/workflow?id=dc17a87057dec748, https://usegalaxy.fr/published/workflow?id=e3d00bdef9addd7c, https://usegalaxy.fr/published/workflow?id=e6f26a543c3e044a, https://usegalaxy.fr/published/workflow?id=f49e102f63d3e2bb, https://usegalaxy.org/published/workflow?id=650f3eb7647b4508, https://usegalaxy.org/published/workflow?id=aeeaf3e06a13bc22, https://workflowhub.eu/workflows/677?version=2 |
metabolomics/lcms-dataprocessing, metabolomics/lcms-preprocessing |
|
ipo |
ipo4retgroup, ipo4xcmsSet |
[W4M][LC-MS] IPO |
2019-10-02 |
https://github.com/rietho/IPO |
1.10.0 |
bioconductor-ipo |
1.32.0 |
To update |
Metabolomics |
|
|
|
|
lecorguille |
https://github.com/rietho/IPO |
https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/ipo |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
isoplot |
isoplot |
Isoplot is a software for the visualisation of MS data from C13 labelling experiments |
2021-07-12 |
https://github.com/llegregam/Isoplot |
1.3.1 |
jinja2 |
|
To update |
Metabolomics, Visualization |
|
|
|
|
workflow4metabolomics |
https://github.com/llegregam/Isoplot/tree/main |
https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/isoplot |
|
|
|
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
3 |
3 |
5 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
11 |
132 |
132 |
137 |
137 |
14 |
14 |
https://usegalaxy.fr/published/workflow?id=7ae6ad6f74a50fac |
|
|
jbrowse_to_container |
jbrowse_to_container |
A tool allowing to export a JBrowse dataset into a JBrowse docker container |
2016-11-08 |
https://jbrowse.org |
|
python |
|
To update |
Web Services |
|
|
|
|
gga |
https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse |
https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
kaptive |
kaptive |
Kaptive reports information about capsular (K) loci found in genome assemblies. |
2017-04-10 |
|
0.3.0 |
kaptive |
3.1.0 |
To update |
Sequence Analysis |
|
|
|
|
nml |
|
https://github.com/phac-nml/galaxy_tools/tree/master/tools/kaptive |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
kat_filter |
kat_@EXECUTABLE@ |
Filtering kmers or reads from a database of kmers hashes |
2017-03-13 |
|
2.3 |
kat |
2.4.2 |
To update |
Sequence Analysis |
|
|
|
|
nml |
|
https://github.com/phac-nml/galaxy_tools/tree/master/tools/kat_filter |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
kat_sect |
kat_@EXECUTABLE@ |
SEquence Coverage estimator Tool. Estimates the coverage of each sequence in a file using K-mers from another sequence file. |
2017-02-06 |
|
2.3 |
kat |
2.4.2 |
To update |
|
|
|
|
|
nml |
|
https://github.com/phac-nml/galaxy_tools/tree/master/tools/kat_sect |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
kegalign |
kegalign |
A Scalable GPU System for Pairwise Whole Genome Alignments based on LASTZ's seed-filter-extend paradigm. |
2024-08-29 |
https://github.com/galaxyproject/KegAlign |
0.1.2.7 |
kegalign-full |
0.1.2.7 |
Up-to-date |
Next Gen Mappers |
|
|
|
|
richard-burhans |
https://github.com/richard-burhans/galaxytools/tree/main/tools/kegalign |
https://github.com/richard-burhans/galaxytools/tree/main/tools/kegalign |
|
|
|
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
31 |
31 |
138 |
138 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
138 |
138 |
31 |
31 |
https://usegalaxy.org/published/workflow?id=ca68ad0d7420c615 |
|
|
kmd_hmdb_data_plot |
kmd_hmdb_data_plot |
retrieves data from KMD HMDB API and produce plot and csv file |
2023-07-10 |
https://github.com/workflow4metabolomics/tools-metabolomics |
1.0.0 |
click |
|
To update |
Metabolomics |
|
|
|
|
workflow4metabolomics |
https://github.com/workflow4metabolomics/tools-metabolomics/blob/master/tools/kmd_hmdb_data_plot/ |
https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/kmd_hmdb_data_plot |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
label_to_binary |
label_to_binary |
Convert label map to binary image |
2024-03-13 |
https://github.com/bmcv |
1.26.4 |
numpy |
|
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/label_to_binary/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/label_to_binary |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
labelimage2points |
ip_labelimage_to_points |
Label Image to Points |
2017-10-30 |
https://github.com/bmcv |
0.2-2 |
scikit-image |
|
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/labelimage2points/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/labelimage2points |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
2 |
2 |
25 |
38 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
38 |
25 |
2 |
2 |
|
|
|
landmark_registration |
ip_landmark_registration |
Landmark Registration |
2019-02-04 |
https://github.com/bmcv |
0.1.0-2 |
scikit-image |
|
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/landmark_registration/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/landmark_registration |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
14 |
16 |
859 |
931 |
4 |
4 |
5 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
936 |
864 |
20 |
18 |
https://usegalaxy.eu/published/workflow?id=03e8b0d3dcedc092, https://usegalaxy.eu/published/workflow?id=1eaff95bfeb13890, https://usegalaxy.eu/published/workflow?id=64bb7a64877034dc |
|
|
logol |
logol_wrapper |
Logol is a pattern matching grammar language and a set of tools to search a pattern in a sequence |
2018-06-06 |
http://logol.genouest.org/web/app.php/logol |
1.7.8 |
logol |
1.7.8 |
Up-to-date |
Sequence Analysis |
|
|
|
|
genouest |
https://github.com/genouest/galaxy-tools/tree/master/tools/logol |
https://github.com/genouest/galaxy-tools/tree/master/tools/logol |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
lotus2 |
lotus2 |
LotuS2 OTU processing pipeline |
2021-05-13 |
https://lotus2.earlham.ac.uk/ |
2.32 |
lotus2 |
2.34.1 |
To update |
Metagenomics |
Sequence feature detection, DNA barcoding |
Sequence feature detection, DNA barcoding |
Metagenomics, Taxonomy, Microbial ecology |
Metagenomics, Taxonomy, Microbial ecology |
earlhaminst |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/lotus2 |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/lotus2 |
lotus2 |
lotus2 |
LotuS2 is a lightweight and user-friendly pipeline that is fast, precise, and streamlined, using extensive pre- and post-ASV/OTU clustering steps to further increase data quality. High data usage rates and reliability enable high-throughput microbiome analysis in minutes. |
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
202 |
202 |
1566 |
1566 |
0 |
0 |
0 |
0 |
14 |
14 |
181 |
181 |
0 |
0 |
0 |
0 |
1747 |
1747 |
216 |
216 |
https://dev.workflowhub.eu/workflows/1366?version=1, https://usegalaxy.eu/published/workflow?id=466bdd8ba7b67264, https://workflowhub.eu/workflows/1460?version=1 |
microbiome/lotus2-identifying-fungi |
|
mahotas_features |
ip_mahotas_features |
Compute image features using mahotas. |
2024-09-30 |
https://github.com/luispedro/mahotas |
0.7-2 |
mahotas |
|
To update |
Imaging |
|
|
|
|
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/mahotas-features/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/mahotas_features |
|
|
|
mahotas-feature-computation |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
6 |
6 |
32 |
44 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
44 |
32 |
6 |
6 |
|
|
|
mauve_contig_mover |
mauve_contig_mover |
Order a draft genome relative to a related reference genome |
2019-11-19 |
https://github.com/phac-nml/mauve_contig_mover |
1.0.10 |
mauve |
2.4.0.r4736 |
To update |
Sequence Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/mauve_contig_mover |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/mauve_contig_mover |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
meneco |
meneco |
Meneco computes minimal completions to your draft network with reactions from a repair network |
2018-06-11 |
http://bioasp.github.io/meneco/ |
1.5.2 |
meneco |
1.5.2 |
Up-to-date |
Systems Biology |
|
|
|
|
genouest |
https://github.com/genouest/galaxy-tools/tree/master/tools/meneco |
https://github.com/genouest/galaxy-tools/tree/master/tools/meneco |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
mergeneighboursinlabelimage |
ip_merge_neighbours_in_label |
Merge Neighbours in Label Image |
2019-01-08 |
https://github.com/bmcv |
0.3-2 |
scikit-image |
|
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/\mergeneighboursinlabelimage |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/mergeneighboursinlabelimage |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
2 |
3 |
11 |
25 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
25 |
11 |
3 |
2 |
|
|
|
metfrag |
metfrag |
[Metabolomics][LC-MS][MS/MS] MetFrag - Perform metfrag analysis (can work with the output from msPurity) |
2018-03-25 |
https://github.com/computational-metabolomics/metfrag-galaxy |
2.4.5+galaxy3 |
metfrag |
2.4.5 |
To update |
Metabolomics |
|
|
|
|
computational-metabolomics |
https://github.com/computational-metabolomics/metfrag-galaxy |
https://github.com/computational-metabolomics/metfrag-galaxy/tree/master/tools/metfrag |
|
|
|
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
21 |
21 |
199 |
199 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
73 |
73 |
391 |
391 |
590 |
590 |
94 |
94 |
https://usegalaxy.fr/published/workflow?id=bcd348178335a19b |
|
|
metfrag-vis |
metfrag_vis |
[Metabolomics][LC-MS][MS/MS] This tool summarises the results generated by MetFrag |
2020-06-30 |
https://github.com/computational-metabolomics/metfrag-galaxy |
2.4.5+galaxy0 |
metfrag |
2.4.5 |
To update |
Metabolomics |
|
|
|
|
computational-metabolomics |
https://github.com/computational-metabolomics/metfrag-galaxy |
https://github.com/computational-metabolomics/metfrag-galaxy/tree/master/tools/metfrag-vis |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
14 |
14 |
52 |
52 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
52 |
52 |
14 |
14 |
|
|
|
miranda |
miranda |
Finds potential target sites for miRNAs in genomic sequences |
2015-10-30 |
https://github.com/hacktrackgnulinux/miranda |
3.3a+galaxy1 |
miranda |
3.3a |
To update |
RNA |
|
|
|
|
earlhaminst |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/miranda |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/miranda |
|
|
|
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
93 |
105 |
6691 |
7072 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
23 |
23 |
27 |
27 |
7099 |
6718 |
128 |
116 |
|
|
|
miranda2asko |
miranda2asko |
Converts miRanda output into AskOmics format |
2018-04-12 |
|
0.2 |
perl |
|
To update |
Convert Formats |
|
|
|
|
genouest |
https://github.com/genouest/galaxy-tools/tree/master/tools/miranda2asko |
https://github.com/genouest/galaxy-tools/tree/master/tools/miranda2asko |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
mixmodel4repeated_measures |
mixmodel4repeated_measures |
[Metabolomics][W4M][Statistics] Mixed models - Analysis of variance for repeated measures using mixed model |
2022-05-16 |
http://workflow4metabolomics.org |
3.1.0+galaxy1 |
r-lme4 |
|
To update |
Metabolomics |
|
|
|
|
workflow4metabolomics |
https://github.com/workflow4metabolomics/tools-metabolomics |
https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/mixmodel4repeated_measures |
|
|
|
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
33 |
33 |
305 |
305 |
305 |
305 |
33 |
33 |
|
|
|
mob_suite |
mob_recon, mob_typer |
MOB-suite is a set of software tools for clustering, reconstruction and typing of plasmids from draft assemblies |
2018-04-30 |
https://github.com/phac-nml/mob-suite |
3.1.9 |
mob_suite |
3.1.9 |
Up-to-date |
Sequence Analysis |
Clustering, Sequence analysis |
Clustering, Sequence analysis |
Metagenomics, Sequence assembly, Genotype and phenotype, Mobile genetic elements, Genomics |
Metagenomics, Sequence assembly, Genotype and phenotype, Mobile genetic elements |
nml |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob-suite |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/mob_suite |
mob_suite |
mob_suite |
MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assembliesThe MOB-suite depends on a series of databases which are too large to be hosted in git-hub. They can be downloaded or updated by running mob_init or if running any of the tools for the first time, the databases will download and initialize automatically if you do not specify an alternate database location. |
|
0 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
469 |
469 |
147109 |
147109 |
1 |
1 |
42 |
42 |
163 |
163 |
46372 |
46372 |
10 |
10 |
46 |
46 |
193569 |
193569 |
643 |
643 |
https://workflowhub.eu/workflows/407?version=1 |
|
|
morphological_operations |
morphological_operations |
Apply morphological operations to images |
2024-03-08 |
https://github.com/bmcv |
1.12.0 |
scipy |
|
To update |
Imaging |
|
|
|
|
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/morphological_operations |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/morphological_operations |
|
|
|
scipy |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
mrbayes |
mrbayes |
A program for the Bayesian estimation of phylogeny. |
2015-12-04 |
|
1.0.2 |
mrbayes |
3.2.7 |
To update |
Sequence Analysis |
|
|
|
|
nml |
|
https://github.com/phac-nml/galaxy_tools/tree/master/tools/mrbayes |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
ms2snoop |
ms2snoop |
[W4M][Utils] Extraction et nettoyage des spectre MS1/2 post-traitement MSPurity. |
2022-03-15 |
http://workflow4metabolomics.org |
2.2.1 |
r-base |
|
To update |
Metabolomics |
|
|
|
|
workflow4metabolomics |
https://github.com/workflow4metabolomics/tools-metabolomics |
https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/ms2snoop |
|
|
|
|
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
10 |
157 |
157 |
157 |
157 |
10 |
10 |
|
|
|
msPurity |
mspurity_averagefragspectra, mspurity_combineannotations, mspurity_createdatabase, mspurity_createmsp, mspurity_dimspredictpuritysingle, mspurity_filterfragspectra, mspurity_flagremove, mspurity_frag4feature, mspurity_puritya, mspurity_purityx, mspurity_spectralmatching |
[Metabolomics][LC-MS][DIMS][MS/MS] msPurity - R package for precursor ion purity assessments, data processing and spectral matching for LC-MS(/MS) and DI-MS(/MS) data |
2019-05-24 |
https://github.com/computational-metabolomics/mspurity-galaxy |
1.28.0 |
bioconductor-mspurity |
1.32.0 |
To update |
Metabolomics |
|
|
|
|
computational-metabolomics |
https://github.com/computational-metabolomics/mspurity-galaxy |
https://github.com/computational-metabolomics/mspurity-galaxy/tree/master/tools/msPurity |
|
|
|
|
0 |
0 |
10 |
11 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
10 |
0 |
19 |
19 |
869 |
869 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
126 |
126 |
10771 |
10771 |
11640 |
11640 |
145 |
145 |
https://usegalaxy.fr/published/workflow?id=6babfa7409467035, https://usegalaxy.fr/published/workflow?id=bcd348178335a19b, https://usegalaxy.fr/published/workflow?id=cca13353d553319e |
|
|
msp_split |
msp_split |
[Metabolomics][LC-MS][DIMS][MS/MS] msPurity - R package for precursor ion purity assessments, data processing and spectral matching for LC-MS(/MS) and DI-MS(/MS) data |
2019-09-24 |
https://github.com/computational-metabolomics/mspurity-galaxy |
0.0.2 |
|
|
To update |
Metabolomics |
|
|
|
|
tomnl |
https://github.com/computational-metabolomics/mspurity-galaxy |
https://github.com/computational-metabolomics/mspurity-galaxy/tree/master/tools/utils/msp_split |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
mykrobe_parser |
mykrobe_parseR |
RScript to parse the results of mykrobe predictor. |
2018-09-28 |
https://github.com/phac-nml/mykrobe-parser |
0.1.4.1 |
r-base |
|
To update |
Sequence Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/mykrobe-parser |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/mykrobe_parser |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
mzxmlshaper |
mzxmlshaper |
Convert mzML, mzXML or netCDF files to mzML or mzXML |
2024-09-20 |
https://rdrr.io/bioc/mzR/ |
1.0.0+galaxy1 |
r-base |
|
To update |
Metabolomics |
|
|
|
|
workflow4metabolomics |
https://github.com/workflow4metabolomics/tools-metabolomics |
https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/mzxmlshaper |
|
|
|
|
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
502 |
502 |
502 |
502 |
3 |
3 |
|
|
|
ncbi_egapx |
ncbi_egapx |
Eukaryotic Genome Annotation Pipeline - External (EGAPx) |
2024-08-19 |
https://github.com/ncbi/egapx |
0.4.1 |
|
|
To update |
Genome annotation |
|
|
|
|
richard-burhans |
https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_egapx |
https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_egapx |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
26 |
26 |
515 |
515 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
515 |
515 |
26 |
26 |
https://usegalaxy.org/published/workflow?id=7251c6e0dad8f927, https://usegalaxy.org/published/workflow?id=951575e9a352301c, https://usegalaxy.org/published/workflow?id=ce488732866ba48f, https://usegalaxy.org/published/workflow?id=e93a0522ec3a35e6 |
|
|
ncbi_fcs_adaptor |
ncbi_fcs_adaptor |
FCS-adaptor detects adaptor and vector contamination in genome sequences. |
2024-02-23 |
https://github.com/ncbi/fcs |
0.5.0 |
|
|
To update |
Sequence Analysis |
|
|
|
|
richard-burhans |
https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor |
https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor |
|
|
|
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
3 |
3 |
207 |
207 |
2152 |
2152 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2155 |
2155 |
208 |
208 |
|
sequence-analysis/ncbi-fcs |
|
nmr_annotation |
NmrAnnotation |
[Metabolomics][W4M][NMR] NMR Annotation - Annotation of complex mixture NMR spectra and metabolite proportion estimation |
2019-07-30 |
http://workflow4metabolomics.org |
3.0.0+galaxy1 |
libgfortran |
|
To update |
Metabolomics |
|
|
|
|
marie-tremblay-metatoul |
https://github.com/workflow4metabolomics/nmr_annotation |
https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/nmr_annotation |
|
|
|
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
5 |
5 |
40 |
50 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
47 |
47 |
373 |
373 |
423 |
413 |
52 |
52 |
|
|
|
nmr_preprocessing |
NMR_Preprocessing, NMR_Read |
[Metabolomics][W4M][NMR] NMR Preprocessing - Preprocessing of 1D NMR spectra from FID to baseline correction |
2019-07-29 |
http://workflow4metabolomics.org |
|
r-ggplot2 |
2.2.1 |
To update |
Metabolomics |
|
|
|
|
marie-tremblay-metatoul |
https://github.com/workflow4metabolomics/nmr_preprocessing |
https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/nmr_preprocessing |
|
|
|
|
0 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
0 |
5 |
5 |
126 |
142 |
0 |
0 |
0 |
0 |
5 |
5 |
343 |
379 |
88 |
88 |
2225 |
2225 |
2746 |
2694 |
98 |
98 |
|
|
|
normalization |
normalization |
[Metabolomics][W4M][ALL] Normalization (operation applied on each individual spectrum) of preprocessed data |
2019-07-30 |
http://workflow4metabolomics.org |
1.0.7+galaxy2 |
r-batch |
1.1_4 |
To update |
Metabolomics |
|
|
|
|
marie-tremblay-metatoul |
https://github.com/workflow4metabolomics/normalization |
https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/normalization |
|
|
|
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
47 |
48 |
191 |
211 |
0 |
0 |
0 |
0 |
12 |
13 |
237 |
256 |
306 |
306 |
2977 |
2977 |
3444 |
3405 |
367 |
365 |
https://usegalaxy.eu/published/workflow?id=3e2718f1ba1a22be, https://usegalaxy.fr/published/workflow?id=7e9dcb13f95f9567 |
metabolomics/lcms-dataprocessing |
|
openlabcds2csv |
openlabcds2csv |
Creates a summary of several "Internal Standard Report" OpenLabCDS results. |
2021-10-28 |
|
0.1.0 |
openjdk |
|
To update |
Metabolomics |
|
|
|
|
genouest |
|
https://github.com/genouest/galaxy-tools/tree/master/tools/openlabcds2csv |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
orientationpy |
orientationpy |
Compute image orientation |
2024-03-12 |
https://github.com/bmcv |
0.2.0.4 |
orientationpy |
0.2.0.4 |
Up-to-date |
Imaging |
|
|
|
|
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/orientationpy |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/orientationpy |
|
|
|
orientationj |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
overlay_images |
ip_overlay_images |
Overlay two images |
2022-02-26 |
https://github.com/BMCV/galaxy-image-analysis |
0.0.4 |
scikit-image |
|
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/overlay_images/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/overlay_images |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
34 |
34 |
187 |
187 |
1 |
1 |
1 |
1 |
2 |
2 |
152 |
152 |
0 |
0 |
0 |
0 |
340 |
340 |
37 |
37 |
https://dev.workflowhub.eu/workflows/1258?version=3, https://usegalaxy.eu/published/workflow?id=1ffacb28226460ac, https://usegalaxy.eu/published/workflow?id=23030421cd9fcfb2, https://usegalaxy.eu/published/workflow?id=6fbd9b2274c62ebe, https://usegalaxy.eu/published/workflow?id=7d7550ce7004d71e, https://usegalaxy.eu/published/workflow?id=bc78c184fabcff1d, https://usegalaxy.eu/published/workflow?id=dc8b78d093be59ae, https://usegalaxy.org.au/published/workflow?id=8e28c3b252062b3b, https://usegalaxy.org/published/workflow?id=a8e39acc103c3d6b, https://usegalaxy.org/published/workflow?id=d47cddc372c88094, https://workflowhub.eu/workflows/1522?version=1, https://workflowhub.eu/workflows/1526?version=1, https://workflowhub.eu/workflows/1528?version=1, https://workflowhub.eu/workflows/1532?version=1, https://workflowhub.eu/workflows/1730?version=1, https://workflowhub.eu/workflows/771?version=2 |
imaging/2D-spot-detection, imaging/imaging-introduction, imaging/process-image-bioimageio, imaging/voronoi-segmentation |
|
pangolin |
pangolin |
Phylogenetic Assignment of Named Global Outbreak LINeages |
2020-05-01 |
https://github.com/hCoV-2019/pangolin |
1.1.14 |
pangolin |
4.3.1 |
To update |
Sequence Analysis |
|
|
|
|
nml |
https://github.com/hCoV-2019/pangolin |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/pangolin |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
573 |
573 |
7622 |
7622 |
391 |
391 |
8560 |
8560 |
268 |
268 |
2952 |
2952 |
12 |
12 |
548 |
548 |
19682 |
19682 |
1244 |
1244 |
https://dev.workflowhub.eu/workflows/1293?version=1, https://usegalaxy.eu/published/workflow?id=0189bab68f828d86, https://usegalaxy.eu/published/workflow?id=1d1ebdeddf23bdb9, https://usegalaxy.eu/published/workflow?id=4c75ab0be3c56494, https://usegalaxy.eu/published/workflow?id=5c15f251642bfa1f, https://usegalaxy.eu/published/workflow?id=74f19aff1b9cdd6b, https://usegalaxy.eu/published/workflow?id=9feebfc6c34da287, https://usegalaxy.fr/published/workflow?id=2345fad7dac13daa, https://usegalaxy.fr/published/workflow?id=591c57173e259ca6, https://usegalaxy.fr/published/workflow?id=e4735d214a68b790, https://usegalaxy.fr/published/workflow?id=feb57548b3ce914d, https://usegalaxy.org.au/published/workflow?id=7563b3ef697a69fd, https://usegalaxy.org/published/workflow?id=0fa2ce12c2874b1d, https://usegalaxy.org/published/workflow?id=4b41a8247f52c463, https://usegalaxy.org/published/workflow?id=8b81b9a3b49bbf98, https://usegalaxy.org/published/workflow?id=d96bd5c9fb553f2c, https://workflowhub.eu/workflows/1391?version=1, https://workflowhub.eu/workflows/155?version=5 |
galaxy-interface/workflow-automation, variant-analysis/sars-cov-2-variant-discovery |
|
patrist |
patrist |
Extract Patristic Distance From a Tree |
2019-12-14 |
https://gist.github.com/ArtPoon/7330231e74201ded54b87142a1d6cd02 |
0.1.2 |
python |
|
To update |
Phylogenetics |
|
|
|
|
nml |
https://github.com/phac-nml/patrist |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/patrist |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
peptimapper |
peptimapper_clustqualify, peptimapper_clust_to_gff, peptimapper_pep_match, peptimapper_pep_novo_tag |
Proteogenomics workflow for the expert annotation of eukaryotic genomes |
2021-11-03 |
https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-5431-9 |
2.1 |
|
|
To update |
Proteomics |
|
|
|
|
genouest |
https://github.com/genouest/galaxy-tools/tree/master/tools/peptimapper |
https://github.com/genouest/galaxy-tools/tree/master/tools/peptimapper |
|
|
|
|
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
6 |
6 |
6 |
6 |
1 |
1 |
|
|
|
permutate_axis |
ip_permutate_axis |
Permutates axes |
2017-10-30 |
https://github.com/bmcv |
0.2-2 |
scikit-image |
|
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/permutate_axis/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/permutate_axis |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
1 |
2 |
26 |
42 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
42 |
26 |
2 |
1 |
|
|
|
physiofit |
physiofit |
PhysioFit is a scientific tool designed to quantify cell growth parameters and uptake & production fluxes |
2022-09-26 |
physiofit.readthedocs.io |
3.4.0 |
physiofit |
3.4.0 |
Up-to-date |
Metabolomics |
|
|
|
|
workflow4metabolomics |
https://github.com/MetaSys-LISBP/PhysioFit |
https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/physiofit |
|
|
|
|
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
28 |
28 |
28 |
28 |
2 |
2 |
https://usegalaxy.fr/published/workflow?id=7ae6ad6f74a50fac |
|
|
physiofit_manager |
physiofit_data_manager |
Handling of physiofit input files |
2022-11-03 |
physiofit.readthedocs.io |
1.0.1 |
physiofit_data_manager |
1.0.1 |
Up-to-date |
Metabolomics |
|
|
|
|
workflow4metabolomics |
https://github.com/MetaboHUB-MetaToul-FluxoMet/PhysioFit_Data_Manager |
https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/physiofit_manager |
|
|
|
|
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
9 |
9 |
9 |
9 |
1 |
1 |
https://usegalaxy.fr/published/workflow?id=7ae6ad6f74a50fac |
|
|
plantseg |
plantseg |
Tool for cell instance aware segmentation in densely packed 3D volumetric images |
2024-06-19 |
https://github.com/bmcv |
1.8.1 |
plant-seg |
|
To update |
Imaging |
Network analysis, Quantification, Microscope image visualisation |
Network analysis, Quantification, Microscope image visualisation |
Plant biology, Bioimaging, Light microscopy, Machine learning, Electron microscopy |
Plant biology, Bioimaging, Light microscopy, Machine learning, Electron microscopy |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/plantseg/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/plantseg |
plantseg |
PlantSeg |
Accurate and Versatile 3D Segmentation of Plant Tissues at Cellular Resolution.PlantSeg is a tool for cell instance aware segmentation in densely packed 3D volumetric images. The pipeline uses a two stages segmentation strategy (Neural Network + Segmentation). The pipeline is tuned for plant cell tissue acquired with confocal and light sheet microscopy. Pre-trained models are provided. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
plasmid_profiler |
plasmid_profiler |
Explores plasmid content in WGS data |
2016-11-07 |
|
0.1.6 |
r |
|
To update |
|
|
|
|
|
nml |
|
https://github.com/phac-nml/galaxy_tools/tree/master/tools/plasmid_profiler |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
plasmidspades |
plasmidspades |
Genome assembler for assemblying plasmid |
2016-06-06 |
|
1.1 |
spades |
4.2.0 |
To update |
Assembly |
|
|
|
|
nml |
|
https://github.com/phac-nml/galaxy_tools/tree/master/tools/plasmidspades |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
plotheatmap |
plotheatmap |
Plot heatmap of gene expression data |
2017-07-04 |
https://github.com/TGAC/earlham-galaxytools/ |
1.0 |
bioconductor-preprocesscore |
1.68.0 |
To update |
Computational chemistry |
|
|
|
|
earlhaminst |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/plotheatmap |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/plotheatmap |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
pneumocat |
pneumocat |
Pneumococcal Capsular Typing of illumina fastq reads |
2020-03-24 |
https://github.com/phe-bioinformatics/PneumoCaT |
1.2.1 |
pneumocat |
1.2.1 |
Up-to-date |
Variant Analysis |
|
|
|
|
nml |
https://github.com/phe-bioinformatics/PneumoCaT |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/pneumocat |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
points2labelimage |
ip_points_to_label |
Points to label image |
2017-10-30 |
https://github.com/bmcv |
0.4.1 |
scikit-image |
|
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/points2labelimage/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/points2labelimage |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
2 |
2 |
46 |
54 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
54 |
46 |
2 |
2 |
https://workflowhub.eu/workflows/1528?version=1 |
imaging/2D-spot-detection |
|
points_association_nn |
ip_points_association_nn |
Association of points in consecutive frames |
2021-07-22 |
https://github.com/BMCV/galaxy-image-analysis |
0.0.3-2 |
numpy |
|
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/points_association_nn/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/points_association_nn |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
5 |
5 |
46 |
46 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
46 |
46 |
5 |
5 |
https://dev.workflowhub.eu/workflows/1374?version=1, https://usegalaxy.eu/published/workflow?id=e25f3ca3a1b4e4d8, https://usegalaxy.eu/published/workflow?id=ffa80e0637d079f2, https://workflowhub.eu/workflows/1499?version=1 |
imaging/detection-of-mitoflashes |
|
projective_transformation |
ip_projective_transformation |
Projective transformation |
2018-12-07 |
https://github.com/bmcv |
0.1.2 |
scikit-image |
|
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/projective_transformation/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/projective_transformation |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
4 |
6 |
33 |
86 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
86 |
33 |
6 |
4 |
https://usegalaxy.eu/published/workflow?id=1eaff95bfeb13890 |
|
|
projective_transformation_points |
ip_projective_transformation_points |
Projective transformation of ROIs defined by pixel (point) coordinates |
2018-12-07 |
https://github.com/bmcv |
0.1.1 |
scikit-image |
|
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/projective_transformation_points/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/projective_transformation_points |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
14 |
18 |
20446 |
21445 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
21445 |
20446 |
18 |
14 |
https://usegalaxy.eu/published/workflow?id=03e8b0d3dcedc092, https://usegalaxy.eu/published/workflow?id=64bb7a64877034dc |
|
|
promer |
promer4_substitutions |
Aligns two sets of contigs and reports amino acid substitutions between them |
2019-12-14 |
https://github.com/phac-nml/promer |
1.2 |
python |
|
To update |
Assembly |
|
|
|
|
nml |
https://github.com/phac-nml/promer |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/promer |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
pseudogenome |
pseudogenome |
Create a pseudogenome from a multiple fasta file either with a JCVI linker or custom length and characters. |
2018-04-06 |
https://github.com/phac-nml/galaxy_tools |
1.0.0 |
perl-bioperl |
1.7.8 |
To update |
Sequence Analysis |
|
|
|
|
nml |
|
https://github.com/phac-nml/galaxy_tools/tree/master/tools/pseudogenome |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
qiime2 |
qiime2__deblur__denoise_16S, qiime2__deblur__denoise_other, qiime2__deblur__visualize_stats |
|
2022-08-26 |
https://github.com/biocore/deblur |
2025.7.0+q2galaxy.2025.7.0 |
|
|
To update |
Metagenomics, Sequence Analysis, Statistics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
q2d2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__deblur |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__deblur |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
3 |
3 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
25 |
25 |
149 |
149 |
16 |
16 |
54 |
54 |
6 |
6 |
126 |
126 |
1 |
1 |
8 |
8 |
337 |
337 |
48 |
48 |
|
|
|
qiime2 |
qiime2__diversity_lib__alpha_passthrough, qiime2__diversity_lib__beta_passthrough, qiime2__diversity_lib__beta_phylogenetic_meta_passthrough, qiime2__diversity_lib__beta_phylogenetic_passthrough, qiime2__diversity_lib__bray_curtis, qiime2__diversity_lib__faith_pd, qiime2__diversity_lib__jaccard, qiime2__diversity_lib__observed_features, qiime2__diversity_lib__pielou_evenness, qiime2__diversity_lib__shannon_entropy, qiime2__diversity_lib__unweighted_unifrac, qiime2__diversity_lib__weighted_unifrac |
|
2022-08-26 |
https://github.com/qiime2/q2-diversity-lib |
2025.7.0+q2galaxy.2025.7.0 |
|
|
To update |
Metagenomics, Sequence Analysis, Statistics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
q2d2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__diversity_lib |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__diversity_lib |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
12 |
12 |
12 |
12 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
0 |
0 |
2 |
2 |
23 |
23 |
4 |
4 |
29 |
29 |
6 |
6 |
2040 |
2040 |
2 |
2 |
3 |
3 |
2095 |
2095 |
14 |
14 |
https://usegalaxy.org/published/workflow?id=7251c6e0dad8f927 |
|
|
qiime2 |
qiime2__quality_control__bowtie2_build, qiime2__quality_control__decontam_identify, qiime2__quality_control__decontam_identify_batches, qiime2__quality_control__decontam_score_viz, qiime2__quality_control__evaluate_composition, qiime2__quality_control__evaluate_seqs, qiime2__quality_control__evaluate_taxonomy, qiime2__quality_control__exclude_seqs, qiime2__quality_control__filter_reads |
|
2022-08-26 |
https://github.com/qiime2/q2-quality-control |
2025.7.0+q2galaxy.2025.7.0 |
|
|
To update |
Metagenomics, Sequence Analysis, Statistics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
q2d2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__quality_control |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__quality_control |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
6 |
6 |
6 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
0 |
0 |
3 |
3 |
5 |
5 |
8 |
8 |
96 |
96 |
3 |
3 |
3 |
3 |
0 |
0 |
0 |
0 |
104 |
104 |
14 |
14 |
|
|
|
qiime2 |
qiime2__phylogeny__align_to_tree_mafft_fasttree, qiime2__phylogeny__align_to_tree_mafft_iqtree, qiime2__phylogeny__align_to_tree_mafft_raxml, qiime2__phylogeny__fasttree, qiime2__phylogeny__filter_table, qiime2__phylogeny__filter_tree, qiime2__phylogeny__iqtree, qiime2__phylogeny__iqtree_ultrafast_bootstrap, qiime2__phylogeny__midpoint_root, qiime2__phylogeny__raxml, qiime2__phylogeny__raxml_rapid_bootstrap, qiime2__phylogeny__robinson_foulds |
|
2022-08-26 |
https://github.com/qiime2/q2-phylogeny |
2025.7.0+q2galaxy.2025.7.0 |
|
|
To update |
Metagenomics, Sequence Analysis, Statistics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
q2d2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__phylogeny |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__phylogeny |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
12 |
12 |
12 |
12 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
0 |
0 |
92 |
92 |
512 |
512 |
63 |
63 |
227 |
227 |
38 |
38 |
240 |
240 |
13 |
13 |
89 |
89 |
1068 |
1068 |
206 |
206 |
https://usegalaxy.eu/published/workflow?id=7c07e87c77dcee05 |
|
|
qiime2 |
qiime2__metadata__distance_matrix, qiime2__metadata__merge, qiime2__metadata__shuffle_groups, qiime2__metadata__tabulate |
|
2022-08-26 |
https://github.com/qiime2/q2-metadata |
2025.7.0+q2galaxy.2025.7.0 |
|
|
To update |
Metagenomics, Sequence Analysis, Statistics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
q2d2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__metadata |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__metadata |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
3 |
3 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
189 |
189 |
1039 |
1039 |
216 |
216 |
981 |
981 |
42 |
42 |
229 |
229 |
37 |
37 |
263 |
263 |
2512 |
2512 |
484 |
484 |
https://usegalaxy.eu/published/workflow?id=3d0039098a87642c, https://usegalaxy.eu/published/workflow?id=5223c9554718114d, https://usegalaxy.eu/published/workflow?id=851b97ea3d1de9f7, https://usegalaxy.eu/published/workflow?id=b3d48f81329926fc, https://usegalaxy.eu/published/workflow?id=da17a4d690eb0ff3, https://usegalaxy.eu/published/workflow?id=e1f08a63fbc8e173, https://usegalaxy.eu/published/workflow?id=e2af8c661e98f4f4, https://usegalaxy.org.au/published/workflow?id=2d16ed86414f23b3, https://usegalaxy.org.au/published/workflow?id=fb517ec08b571a2d, https://usegalaxy.org/published/workflow?id=517f307db25e4715, https://usegalaxy.org/published/workflow?id=8bb471c28e1a30a3, https://usegalaxy.org/published/workflow?id=a382adce80293f0d, https://usegalaxy.org/published/workflow?id=d32392a39c4d6fbf, https://workflowhub.eu/workflows/892?version=3 |
|
|
qiime2 |
qiime2__quality_filter__q_score |
|
2022-08-26 |
https://github.com/qiime2/q2-quality-filter |
2025.7.0+q2galaxy.2025.7.0 |
|
|
To update |
Metagenomics, Sequence Analysis, Statistics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
q2d2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__quality_filter |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__quality_filter |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
18 |
18 |
37 |
37 |
11 |
11 |
31 |
31 |
3 |
3 |
59 |
59 |
12 |
12 |
20 |
20 |
147 |
147 |
44 |
44 |
|
|
|
qiime2 |
qiime2__fragment_insertion__classify_otus_experimental, qiime2__fragment_insertion__filter_features, qiime2__fragment_insertion__sepp |
|
2022-08-26 |
https://github.com/qiime2/q2-fragment-insertion |
2025.7.0+q2galaxy.2025.7.0 |
|
|
To update |
Metagenomics, Sequence Analysis, Statistics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
q2d2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
3 |
3 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
12 |
12 |
58 |
58 |
4 |
4 |
43 |
43 |
1 |
1 |
1 |
1 |
2 |
2 |
2 |
2 |
104 |
104 |
19 |
19 |
https://usegalaxy.eu/published/workflow?id=6ad6d87618c4e405 |
|
|
qiime2 |
qiime2__feature_table__core_features, qiime2__feature_table__filter_features, qiime2__feature_table__filter_features_conditionally, qiime2__feature_table__filter_samples, qiime2__feature_table__filter_seqs, qiime2__feature_table__group, qiime2__feature_table__heatmap, qiime2__feature_table__merge, qiime2__feature_table__merge_seqs, qiime2__feature_table__merge_taxa, qiime2__feature_table__normalize, qiime2__feature_table__presence_absence, qiime2__feature_table__rarefy, qiime2__feature_table__relative_frequency, qiime2__feature_table__rename_ids, qiime2__feature_table__split, qiime2__feature_table__subsample_ids, qiime2__feature_table__summarize, qiime2__feature_table__summarize_plus, qiime2__feature_table__tabulate_feature_frequencies, qiime2__feature_table__tabulate_sample_frequencies, qiime2__feature_table__tabulate_seqs, qiime2__feature_table__transpose |
|
2022-08-26 |
https://github.com/qiime2/q2-feature-table |
2025.7.0+q2galaxy.2025.7.0 |
|
|
To update |
Metagenomics, Sequence Analysis, Statistics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
q2d2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
17 |
17 |
17 |
17 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
17 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
17 |
0 |
0 |
170 |
170 |
2231 |
2231 |
151 |
151 |
1249 |
1249 |
41 |
41 |
1556 |
1556 |
28 |
28 |
591 |
591 |
5627 |
5627 |
390 |
390 |
https://usegalaxy.eu/published/workflow?id=3d0039098a87642c, https://usegalaxy.eu/published/workflow?id=5223c9554718114d, https://usegalaxy.eu/published/workflow?id=851b97ea3d1de9f7, https://usegalaxy.eu/published/workflow?id=b3d48f81329926fc, https://usegalaxy.eu/published/workflow?id=be9ff4159593cc34, https://usegalaxy.eu/published/workflow?id=da17a4d690eb0ff3, https://usegalaxy.eu/published/workflow?id=e1f08a63fbc8e173, https://usegalaxy.org.au/published/workflow?id=2d16ed86414f23b3, https://usegalaxy.org.au/published/workflow?id=fb517ec08b571a2d, https://usegalaxy.org/published/workflow?id=517f307db25e4715, https://usegalaxy.org/published/workflow?id=8bb471c28e1a30a3, https://usegalaxy.org/published/workflow?id=a382adce80293f0d, https://usegalaxy.org/published/workflow?id=d32392a39c4d6fbf, https://workflowhub.eu/workflows/892?version=3 |
|
|
qiime2 |
qiime2__feature_classifier__blast, qiime2__feature_classifier__classify_consensus_blast, qiime2__feature_classifier__classify_consensus_vsearch, qiime2__feature_classifier__classify_hybrid_vsearch_sklearn, qiime2__feature_classifier__classify_sklearn, qiime2__feature_classifier__extract_reads, qiime2__feature_classifier__find_consensus_annotation, qiime2__feature_classifier__fit_classifier_naive_bayes, qiime2__feature_classifier__fit_classifier_sklearn, qiime2__feature_classifier__makeblastdb, qiime2__feature_classifier__vsearch_global |
|
2022-08-26 |
https://github.com/qiime2/q2-feature-classifier |
2025.7.0+q2galaxy.2025.7.0 |
|
|
To update |
Metagenomics, Sequence Analysis, Statistics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
q2d2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_classifier |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_classifier |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
10 |
10 |
10 |
10 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
0 |
0 |
192 |
192 |
1476 |
1476 |
141 |
141 |
715 |
715 |
37 |
37 |
991 |
991 |
25 |
25 |
168 |
168 |
3350 |
3350 |
395 |
395 |
https://usegalaxy.eu/published/workflow?id=be9ff4159593cc34, https://usegalaxy.eu/published/workflow?id=e2af8c661e98f4f4, https://usegalaxy.org/published/workflow?id=7251c6e0dad8f927 |
|
|
qiime2 |
qiime2__alignment__mafft, qiime2__alignment__mafft_add, qiime2__alignment__mask |
|
2022-08-26 |
https://github.com/qiime2/q2-alignment |
2025.7.0+q2galaxy.2025.7.0 |
|
|
To update |
Metagenomics, Sequence Analysis, Statistics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
q2d2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__alignment |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__alignment |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
3 |
3 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
53 |
53 |
336 |
336 |
31 |
31 |
71 |
71 |
10 |
10 |
102 |
102 |
14 |
14 |
67 |
67 |
576 |
576 |
108 |
108 |
|
|
|
qiime2 |
qiime2__diversity__adonis, qiime2__diversity__alpha, qiime2__diversity__alpha_correlation, qiime2__diversity__alpha_group_significance, qiime2__diversity__alpha_phylogenetic, qiime2__diversity__alpha_rarefaction, qiime2__diversity__beta, qiime2__diversity__beta_correlation, qiime2__diversity__beta_group_significance, qiime2__diversity__beta_phylogenetic, qiime2__diversity__beta_rarefaction, qiime2__diversity__bioenv, qiime2__diversity__core_metrics, qiime2__diversity__core_metrics_phylogenetic, qiime2__diversity__filter_alpha_diversity, qiime2__diversity__filter_distance_matrix, qiime2__diversity__mantel, qiime2__diversity__partial_procrustes, qiime2__diversity__pcoa, qiime2__diversity__pcoa_biplot, qiime2__diversity__procrustes_analysis, qiime2__diversity__tsne, qiime2__diversity__umap |
|
2022-08-26 |
https://github.com/qiime2/q2-diversity |
2025.7.0+q2galaxy.2025.7.0 |
|
|
To update |
Metagenomics, Sequence Analysis, Statistics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
q2d2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__diversity |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__diversity |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
21 |
21 |
22 |
21 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
22 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
21 |
0 |
0 |
86 |
86 |
1531 |
1531 |
70 |
70 |
1321 |
1321 |
34 |
34 |
687 |
687 |
26 |
26 |
327 |
327 |
3866 |
3866 |
216 |
216 |
https://usegalaxy.eu/published/workflow?id=457a3de5c1512707, https://usegalaxy.eu/published/workflow?id=6e5fad1de09af683, https://usegalaxy.eu/published/workflow?id=a91c46b9e0c1d635, https://usegalaxy.org.au/published/workflow?id=543001c51567b438, https://usegalaxy.org/published/workflow?id=7251c6e0dad8f927, https://usegalaxy.org/published/workflow?id=c6b6524108f53688, https://usegalaxy.org/published/workflow?id=ef28b1c267b5a318 |
|
|
qiime2 |
qiime2__composition__add_pseudocount, qiime2__composition__ancom, qiime2__composition__ancombc, qiime2__composition__ancombc2, qiime2__composition__ancombc2_visualizer, qiime2__composition__da_barplot, qiime2__composition__tabulate |
|
2022-08-26 |
https://github.com/qiime2/q2-composition |
2025.7.0+q2galaxy.2025.7.0 |
|
|
To update |
Metagenomics, Sequence Analysis, Statistics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
q2d2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__composition |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__composition |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
4 |
4 |
4 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
15 |
15 |
266 |
266 |
22 |
22 |
215 |
215 |
7 |
7 |
255 |
255 |
9 |
9 |
86 |
86 |
822 |
822 |
53 |
53 |
|
|
|
qiime2 |
qiime2__cutadapt__demux_paired, qiime2__cutadapt__demux_single, qiime2__cutadapt__trim_paired, qiime2__cutadapt__trim_single |
|
2022-08-26 |
https://github.com/qiime2/q2-cutadapt |
2025.7.0+q2galaxy.2025.7.0 |
|
|
To update |
Metagenomics, Sequence Analysis, Statistics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
q2d2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__cutadapt |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__cutadapt |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
4 |
4 |
4 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
45 |
45 |
240 |
240 |
58 |
58 |
152 |
152 |
4 |
4 |
147 |
147 |
3 |
3 |
31 |
31 |
570 |
570 |
110 |
110 |
|
|
|
qiime2 |
qiime2__dada2__denoise_ccs, qiime2__dada2__denoise_paired, qiime2__dada2__denoise_pyro, qiime2__dada2__denoise_single |
|
2022-08-26 |
http://benjjneb.github.io/dada2/ |
2025.7.0+q2galaxy.2025.7.0 |
|
|
To update |
Metagenomics, Sequence Analysis, Statistics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
q2d2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__dada2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__dada2 |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
4 |
4 |
4 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
185 |
185 |
1159 |
1159 |
208 |
208 |
881 |
881 |
37 |
37 |
320 |
320 |
28 |
28 |
180 |
180 |
2540 |
2540 |
458 |
458 |
https://usegalaxy.eu/published/workflow?id=3d0039098a87642c, https://usegalaxy.eu/published/workflow?id=5223c9554718114d, https://usegalaxy.eu/published/workflow?id=851b97ea3d1de9f7, https://usegalaxy.eu/published/workflow?id=b3d48f81329926fc, https://usegalaxy.eu/published/workflow?id=be9ff4159593cc34, https://usegalaxy.eu/published/workflow?id=da17a4d690eb0ff3, https://usegalaxy.eu/published/workflow?id=e1f08a63fbc8e173, https://usegalaxy.org.au/published/workflow?id=2d16ed86414f23b3, https://usegalaxy.org.au/published/workflow?id=fb517ec08b571a2d, https://usegalaxy.org/published/workflow?id=517f307db25e4715, https://usegalaxy.org/published/workflow?id=8bb471c28e1a30a3, https://usegalaxy.org/published/workflow?id=a382adce80293f0d, https://usegalaxy.org/published/workflow?id=d32392a39c4d6fbf, https://workflowhub.eu/workflows/892?version=3 |
|
|
qiime2 |
qiime2__demux__emp_paired, qiime2__demux__emp_single, qiime2__demux__filter_samples, qiime2__demux__partition_samples_paired, qiime2__demux__partition_samples_single, qiime2__demux__subsample_paired, qiime2__demux__subsample_single, qiime2__demux__summarize, qiime2__demux__tabulate_read_counts |
|
2022-08-26 |
https://github.com/qiime2/q2-demux |
2025.7.0+q2galaxy.2025.7.0 |
|
|
To update |
Metagenomics, Sequence Analysis, Statistics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
q2d2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
6 |
6 |
6 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
0 |
0 |
145 |
145 |
708 |
708 |
180 |
180 |
699 |
699 |
33 |
33 |
746 |
746 |
27 |
27 |
126 |
126 |
2279 |
2279 |
385 |
385 |
https://usegalaxy.eu/published/workflow?id=3d0039098a87642c, https://usegalaxy.eu/published/workflow?id=5528702f49c33d83, https://usegalaxy.eu/published/workflow?id=5d401d357500617f, https://usegalaxy.eu/published/workflow?id=86b31ac8a7720e41, https://usegalaxy.eu/published/workflow?id=b1f68ff8158d0b85, https://usegalaxy.eu/published/workflow?id=b2975bb705d3e851, https://usegalaxy.eu/published/workflow?id=be9ff4159593cc34, https://usegalaxy.eu/published/workflow?id=c0b5b499b149005f, https://usegalaxy.eu/published/workflow?id=c58941443cec9380, https://usegalaxy.eu/published/workflow?id=ca5da5179cefec8b, https://usegalaxy.eu/published/workflow?id=fb96000c99db2fa8, https://usegalaxy.org.au/published/workflow?id=19b0f96df6d09b4e, https://usegalaxy.org.au/published/workflow?id=3c1bf73067334071, https://usegalaxy.org.au/published/workflow?id=57aa23f4f0418a07, https://usegalaxy.org.au/published/workflow?id=cddd668a29b1488a, https://usegalaxy.org.au/published/workflow?id=f946d722f7c27479, https://usegalaxy.org/published/workflow?id=0dc387dc861bdb61, https://usegalaxy.org/published/workflow?id=4ca9319c98be08f8, https://usegalaxy.org/published/workflow?id=685b0de4c31f6695, https://usegalaxy.org/published/workflow?id=76b2c4762dd61d03, https://usegalaxy.org/published/workflow?id=7aa87e7f9cfdae78, https://usegalaxy.org/published/workflow?id=a7cc1038b14f2201, https://usegalaxy.org/published/workflow?id=b335f75495dab9b4, https://usegalaxy.org/published/workflow?id=b92e0ee710d167b2, https://workflowhub.eu/workflows/893?version=3 |
|
|
qiime2 |
qiime2__longitudinal__anova, qiime2__longitudinal__feature_volatility, qiime2__longitudinal__first_differences, qiime2__longitudinal__first_distances, qiime2__longitudinal__linear_mixed_effects, qiime2__longitudinal__maturity_index, qiime2__longitudinal__nmit, qiime2__longitudinal__pairwise_differences, qiime2__longitudinal__pairwise_distances, qiime2__longitudinal__plot_feature_volatility, qiime2__longitudinal__volatility |
|
2022-08-26 |
https://github.com/qiime2/q2-longitudinal |
2025.7.0+q2galaxy.2025.7.0 |
|
|
To update |
Metagenomics, Sequence Analysis, Statistics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
q2d2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__longitudinal |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__longitudinal |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
11 |
11 |
11 |
11 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
0 |
0 |
9 |
9 |
40 |
40 |
6 |
6 |
47 |
47 |
6 |
6 |
114 |
114 |
2 |
2 |
8 |
8 |
209 |
209 |
23 |
23 |
|
|
|
qiime2 |
qiime2__emperor__biplot, qiime2__emperor__plot, qiime2__emperor__procrustes_plot |
|
2022-08-26 |
http://biocore.github.io/emperor/build/html/index.html |
2025.7.0+q2galaxy.2025.7.0 |
|
|
To update |
Metagenomics, Sequence Analysis, Statistics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
q2d2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__emperor |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__emperor |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
3 |
3 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
28 |
28 |
86 |
86 |
23 |
23 |
122 |
122 |
12 |
12 |
145 |
145 |
9 |
9 |
27 |
27 |
380 |
380 |
72 |
72 |
|
|
|
qiime2 |
qiime2__sample_classifier__classify_samples, qiime2__sample_classifier__classify_samples_from_dist, qiime2__sample_classifier__classify_samples_ncv, qiime2__sample_classifier__confusion_matrix, qiime2__sample_classifier__fit_classifier, qiime2__sample_classifier__fit_regressor, qiime2__sample_classifier__heatmap, qiime2__sample_classifier__metatable, qiime2__sample_classifier__predict_classification, qiime2__sample_classifier__predict_regression, qiime2__sample_classifier__regress_samples, qiime2__sample_classifier__regress_samples_ncv, qiime2__sample_classifier__scatterplot, qiime2__sample_classifier__split_table, qiime2__sample_classifier__summarize |
|
2022-08-26 |
https://github.com/qiime2/q2-sample-classifier |
2025.7.0+q2galaxy.2025.7.0 |
|
|
To update |
Metagenomics, Sequence Analysis, Statistics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
q2d2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
15 |
15 |
15 |
15 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
15 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
15 |
0 |
0 |
2 |
2 |
11 |
11 |
15 |
15 |
43 |
43 |
5 |
5 |
6 |
6 |
1 |
1 |
4 |
4 |
64 |
64 |
23 |
23 |
|
|
|
qiime2 |
qiime2__taxa__barplot, qiime2__taxa__collapse, qiime2__taxa__filter_seqs, qiime2__taxa__filter_table |
|
2022-08-26 |
https://github.com/qiime2/q2-taxa |
2025.7.0+q2galaxy.2025.7.0 |
|
|
To update |
Metagenomics, Sequence Analysis, Statistics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
q2d2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__taxa |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__taxa |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
4 |
4 |
4 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
163 |
163 |
1290 |
1290 |
104 |
104 |
594 |
594 |
42 |
42 |
408 |
408 |
22 |
22 |
236 |
236 |
2528 |
2528 |
331 |
331 |
https://usegalaxy.eu/published/workflow?id=be9ff4159593cc34, https://usegalaxy.eu/published/workflow?id=e2af8c661e98f4f4 |
|
|
qiime2 |
qiime2__vizard__boxplot, qiime2__vizard__heatmap, qiime2__vizard__lineplot, qiime2__vizard__scatterplot_2d |
|
2024-10-30 |
https://github.com/qiime2/q2-vizard |
0.0.1.dev0+q2galaxy.2025.7.0 |
|
|
To update |
Metagenomics, Sequence Analysis, Statistics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
q2d2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__vizard |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__vizard |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
1 |
1 |
|
|
|
qiime2 |
qiime2__rescript__cull_seqs, qiime2__rescript__degap_seqs, qiime2__rescript__dereplicate, qiime2__rescript__edit_taxonomy, qiime2__rescript__evaluate_classifications, qiime2__rescript__evaluate_cross_validate, qiime2__rescript__evaluate_fit_classifier, qiime2__rescript__evaluate_seqs, qiime2__rescript__evaluate_taxonomy, qiime2__rescript__extract_seq_segments, qiime2__rescript__filter_seqs_length, qiime2__rescript__filter_seqs_length_by_taxon, qiime2__rescript__filter_taxa, qiime2__rescript__get_bv_brc_genome_features, qiime2__rescript__get_bv_brc_genomes, qiime2__rescript__get_bv_brc_metadata, qiime2__rescript__get_gtdb_data, qiime2__rescript__get_midori2_data, qiime2__rescript__get_ncbi_data, qiime2__rescript__get_ncbi_data_protein, qiime2__rescript__get_ncbi_genomes, qiime2__rescript__get_pr2_data, qiime2__rescript__get_silva_data, qiime2__rescript__get_unite_data, qiime2__rescript__merge_taxa, qiime2__rescript__orient_reads, qiime2__rescript__orient_seqs, qiime2__rescript__parse_silva_taxonomy, qiime2__rescript__reverse_transcribe, qiime2__rescript__subsample_fasta, qiime2__rescript__trim_alignment |
|
2024-04-25 |
https://github.com/nbokulich/RESCRIPt |
2025.7.0+q2galaxy.2025.7.0 |
|
|
To update |
Metagenomics, Sequence Analysis, Statistics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
q2d2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__rescript |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__rescript |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
0 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
7 |
7 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 |
7 |
2 |
2 |
|
|
|
qiime2 |
qiime2__vsearch__cluster_features_closed_reference, qiime2__vsearch__cluster_features_de_novo, qiime2__vsearch__cluster_features_open_reference, qiime2__vsearch__dereplicate_sequences, qiime2__vsearch__fastq_stats, qiime2__vsearch__merge_pairs, qiime2__vsearch__uchime_denovo, qiime2__vsearch__uchime_ref |
|
2022-08-26 |
https://github.com/qiime2/q2-vsearch |
2025.7.0+q2galaxy.2025.7.0 |
|
|
To update |
Metagenomics, Sequence Analysis, Statistics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
q2d2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__vsearch |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__vsearch |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
8 |
8 |
8 |
7 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8 |
0 |
0 |
17 |
17 |
188 |
188 |
9 |
9 |
169 |
169 |
4 |
4 |
17 |
17 |
10 |
10 |
77 |
77 |
451 |
451 |
40 |
40 |
|
|
|
qiime2 |
qiime2__stats__alpha_group_significance, qiime2__stats__collate_stats, qiime2__stats__facet_across, qiime2__stats__facet_within, qiime2__stats__mann_whitney_u, qiime2__stats__mann_whitney_u_facet, qiime2__stats__plot_rainclouds, qiime2__stats__prep_alpha_distribution, qiime2__stats__wilcoxon_srt, qiime2__stats__wilcoxon_srt_facet |
|
2024-10-30 |
https://github.com/qiime2/q2-stats |
2025.7.0+q2galaxy.2025.7.0 |
|
|
To update |
Metagenomics, Sequence Analysis, Statistics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
q2d2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
0 |
0 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
9 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
qiime2 |
qiime2_core__tools__export, qiime2_core__tools__import, qiime2_core__tools__import_fastq |
|
2022-08-26 |
https://qiime2.org |
2025.7.0+dist.h44bd78f6 |
|
|
To update |
Metagenomics, Sequence Analysis, Statistics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
q2d2 |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools |
https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
2 |
2 |
3 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
413 |
413 |
53006 |
53006 |
500 |
500 |
36664 |
36664 |
116 |
116 |
4610 |
4610 |
54 |
54 |
1468 |
1468 |
95748 |
95748 |
1083 |
1083 |
https://usegalaxy.eu/published/workflow?id=3d0039098a87642c, https://usegalaxy.eu/published/workflow?id=457a3de5c1512707, https://usegalaxy.eu/published/workflow?id=5528702f49c33d83, https://usegalaxy.eu/published/workflow?id=5d401d357500617f, https://usegalaxy.eu/published/workflow?id=6e5fad1de09af683, https://usegalaxy.eu/published/workflow?id=86b31ac8a7720e41, https://usegalaxy.eu/published/workflow?id=a91c46b9e0c1d635, https://usegalaxy.eu/published/workflow?id=b1f68ff8158d0b85, https://usegalaxy.eu/published/workflow?id=b2975bb705d3e851, https://usegalaxy.eu/published/workflow?id=be9ff4159593cc34, https://usegalaxy.eu/published/workflow?id=c0b5b499b149005f, https://usegalaxy.eu/published/workflow?id=c58941443cec9380, https://usegalaxy.eu/published/workflow?id=ca5da5179cefec8b, https://usegalaxy.eu/published/workflow?id=fb96000c99db2fa8, https://usegalaxy.org.au/published/workflow?id=19b0f96df6d09b4e, https://usegalaxy.org.au/published/workflow?id=3c1bf73067334071, https://usegalaxy.org.au/published/workflow?id=543001c51567b438, https://usegalaxy.org.au/published/workflow?id=57aa23f4f0418a07, https://usegalaxy.org.au/published/workflow?id=cddd668a29b1488a, https://usegalaxy.org.au/published/workflow?id=f946d722f7c27479, https://usegalaxy.org/published/workflow?id=0dc387dc861bdb61, https://usegalaxy.org/published/workflow?id=4ca9319c98be08f8, https://usegalaxy.org/published/workflow?id=685b0de4c31f6695, https://usegalaxy.org/published/workflow?id=76b2c4762dd61d03, https://usegalaxy.org/published/workflow?id=7aa87e7f9cfdae78, https://usegalaxy.org/published/workflow?id=a7cc1038b14f2201, https://usegalaxy.org/published/workflow?id=b335f75495dab9b4, https://usegalaxy.org/published/workflow?id=b92e0ee710d167b2, https://usegalaxy.org/published/workflow?id=c6b6524108f53688, https://usegalaxy.org/published/workflow?id=ef28b1c267b5a318, https://workflowhub.eu/workflows/893?version=3 |
|
|
quasitools |
aacoverage, aavariants, callcodonvar, callntvar, complexity_bam, complexity_fasta, consensus, distance, dnds, drmutations, hydra, quality |
A collection of tools for analysing Viral Quasispecies |
2017-10-05 |
https://github.com/phac-nml/quasitools |
0.7.0 |
quasitools |
0.7.0 |
Up-to-date |
Sequence Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/quasitools |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/quasitools |
|
|
|
|
0 |
12 |
0 |
12 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
174 |
174 |
14252 |
14252 |
6 |
6 |
27 |
27 |
14279 |
14279 |
180 |
180 |
|
|
|
rdeval |
rdeval, rdeval_report |
rdeval is a General purpose, multithreaded read analysis and manipulation tool. |
2025-02-17 |
https://github.com/vgl-hub/rdeval |
0.0.7 |
rdeval |
0.0.7 |
Up-to-date |
Assembly |
|
|
|
|
richard-burhans |
https://github.com/vgl-hub/rdeval |
https://github.com/richard-burhans/galaxytools/tree/main/tools/rdeval |
|
|
|
|
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
https://usegalaxy.org/published/workflow?id=6988c29ae84d2788, https://usegalaxy.org/published/workflow?id=af1f4dba9aaa0b52, https://workflowhub.eu/workflows/632?version=10 |
|
|
rdock |
rdock |
Docking ligands to proteins and nucleic acids |
2016-12-14 |
https://rdock.github.io/ |
1.0 |
rDock |
2013.1 |
To update |
Computational chemistry |
|
|
|
|
earlhaminst |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/rdock/ |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/rdock |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
refseq_masher |
refseq_masher_contains, refseq_masher_matches |
Find what genomes match or are contained within your sequence data using Mash_ and a Mash sketch database. |
2018-01-31 |
https://github.com/phac-nml/refseq_masher |
0.1.2 |
refseq_masher |
0.1.2 |
Up-to-date |
Sequence Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/refseq_masher |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/refseq_masher |
|
|
|
|
2 |
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
57 |
57 |
1546 |
1546 |
90 |
90 |
611 |
611 |
0 |
0 |
0 |
0 |
11 |
11 |
3504 |
3504 |
5661 |
5661 |
158 |
158 |
https://usegalaxy.eu/published/workflow?id=0404013d5c27210d, https://usegalaxy.eu/published/workflow?id=3303a04887a47675, https://usegalaxy.eu/published/workflow?id=3d937648809ca4e7, https://usegalaxy.eu/published/workflow?id=4216424f032c055f, https://usegalaxy.eu/published/workflow?id=723e718f37e9ab91, https://usegalaxy.eu/published/workflow?id=7e48134082dab0a3, https://usegalaxy.eu/published/workflow?id=b93333efdab316d8, https://usegalaxy.eu/published/workflow?id=e532d98f4b368666, https://usegalaxy.eu/published/workflow?id=fca458178b3c794a, https://usegalaxy.org/published/workflow?id=0e30324072570abb, https://usegalaxy.org/published/workflow?id=4161cfd67ed94b5d, https://usegalaxy.org/published/workflow?id=4d1279007d0137fa, https://usegalaxy.org/published/workflow?id=524602abe59b18f7, https://usegalaxy.org/published/workflow?id=5cd56232e873beab, https://usegalaxy.org/published/workflow?id=9ac1e4efe310b3b3, https://usegalaxy.org/published/workflow?id=9e5c5ddb60a24889, https://usegalaxy.org/published/workflow?id=c454c930ccfb0d3f, https://usegalaxy.org/published/workflow?id=f4d623a19b32370e, https://workflowhub.eu/workflows/1043?version=9 |
|
|
repeat_channels |
repeat_channels |
Convert single-channel to multi-channel image |
2024-04-25 |
https://github.com/bmcv |
1.26.4 |
numpy |
|
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/repeat_channels/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/repeat_channels |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
5 |
14 |
14 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
14 |
14 |
5 |
5 |
https://usegalaxy.eu/published/workflow?id=23030421cd9fcfb2, https://usegalaxy.eu/published/workflow?id=bc78c184fabcff1d, https://workflowhub.eu/workflows/1522?version=1, https://workflowhub.eu/workflows/1730?version=1 |
imaging/voronoi-segmentation |
|
repeatexplorer2 |
repeatexplorer_clustering |
Tool for annotation of repeats from unassembled shotgun reads. |
2023-11-01 |
https://github.com/repeatexplorer/repex_tarean |
2.3.8 |
|
|
To update |
Genome annotation |
|
|
|
|
gga |
https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/repeatexplorer2 |
https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/repeatexplorer2 |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
61 |
61 |
225 |
225 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
225 |
225 |
61 |
61 |
|
|
|
replace_chromosome_names |
replace_chromosome_names |
Replace chromosome names |
2017-05-18 |
https://github.com/dpryan79/ChromosomeMappings/ |
0.1 |
python |
|
To update |
Text Manipulation |
|
|
|
|
earlhaminst |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/replace_chromosome_names/ |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/replace_chromosome_names |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
59 |
85 |
490 |
579 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
579 |
490 |
85 |
59 |
|
|
|
rfove |
rfove |
Perform segmentation region-based fitting of overlapping ellipses |
2023-11-12 |
https://sites.google.com/site/costaspanagiotakis/research/cs |
2023.11.12 |
|
|
To update |
Imaging |
Image analysis |
Image analysis |
Cell biology, Biomedical science, Imaging |
Cell biology, Biomedical science, Imaging |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/rfove/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/rfove |
rfove |
RFOVE |
RFOVE (Region-based Fitting of Overlapping Ellipses and its Application to Cells Segmentation) is a MATLAB script for performing image segmentation on cells. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 |
7 |
15 |
15 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
15 |
15 |
7 |
7 |
|
|
|
scale_image |
ip_scale_image |
Scale image |
2018-12-07 |
https://github.com/bmcv |
0.18.3 |
scikit-image |
|
To update |
Imaging |
Image analysis, Image annotation, Visualisation, Data handling |
Image analysis, Image annotation, Visualisation, Data handling |
Imaging, Software engineering, Literature and language |
Imaging, Software engineering, Literature and language |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/scale_image/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/scale_image |
scikit-image |
scikit-image |
Scikit-image contains image processing algorithms for SciPy, including IO, morphology, filtering, warping, color manipulation, object detection, etc. |
scikit-image |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
14 |
17 |
454 |
521 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
521 |
454 |
17 |
14 |
https://usegalaxy.eu/published/workflow?id=03e8b0d3dcedc092, https://usegalaxy.eu/published/workflow?id=64bb7a64877034dc |
|
|
segalign |
segalign |
A Scalable GPU System for Pairwise Whole Genome Alignments based on LASTZ's seed-filter-extend paradigm. |
2024-04-15 |
https://github.com/gsneha26/SegAlign |
0.1.2.7 |
segalign-galaxy |
0.1.2.7 |
Up-to-date |
Next Gen Mappers |
|
|
|
|
richard-burhans |
https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign |
https://github.com/richard-burhans/galaxytools/tree/main/tools/segalign |
|
|
|
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
86 |
86 |
379 |
379 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
379 |
379 |
86 |
86 |
|
|
|
segmetrics |
ip_segmetrics |
Image segmentation and object detection performance measures |
2022-10-07 |
https://github.com/bmcv |
1.4 |
segmetrics |
1.5 |
To update |
Imaging |
Image analysis |
Image analysis |
|
|
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/segmetrics/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/segmetrics |
segmetrics |
SegMetrics |
Image segmentation and object detection performance measures |
segmetrics |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
2 |
2 |
10 |
10 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
10 |
2 |
2 |
https://workflowhub.eu/workflows/1517?version=1 |
imaging/parameter-tuning |
|
seqtk_nml |
seqtk_nml_sample |
Tool to downsample fastq reads |
2017-09-19 |
https://github.com/lh3/seqtk |
1.0.1 |
seqtk |
1.5 |
To update |
Sequence Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/snvphyl-galaxy |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/seqtk_nml |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
sistr_cmd |
sistr_cmd |
SISTR in silico serotyping tool |
2017-02-20 |
https://github.com/phac-nml/sistr_cmd |
1.1.3 |
sistr_cmd |
1.1.3 |
Up-to-date |
Sequence Analysis |
Genome assembly, Visualisation, Multilocus sequence typing |
Genome assembly, Visualisation, Multilocus sequence typing |
Whole genome sequencing, Immunoproteins and antigens, Sequence assembly, Zoology, Public health and epidemiology |
Whole genome sequencing, Immunoproteins and antigens, Sequence assembly, Zoology, Public health and epidemiology |
nml |
https://github.com/phac-nml/sistr_cmd |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/sistr_cmd |
SISTR |
SISTR |
The Salmonella In Silico Typing Resource (SISTR) is an open-source and freely available web application for rapid in silico typing and serovar prediction from Salmonella genome assemblies using cgMLST and O and H antigen gene searching. |
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
334 |
335 |
4199 |
4225 |
0 |
0 |
0 |
0 |
72 |
72 |
638 |
638 |
0 |
0 |
0 |
0 |
4863 |
4837 |
407 |
406 |
https://usegalaxy.eu/published/workflow?id=628062a8cf93261f, https://usegalaxy.eu/published/workflow?id=94c3d329c31c712f, https://usegalaxy.eu/published/workflow?id=cbe3769f1abb9fa5, https://usegalaxy.eu/published/workflow?id=fde21b5f5c169114, https://usegalaxy.org.au/published/workflow?id=92fcdd490831c6c5, https://workflowhub.eu/workflows/407?version=1 |
|
|
skyline2isocor |
skyline2isocor |
Converting skyline output to IsoCor input |
2024-02-07 |
https://github.com/MetaboHUB-MetaToul-FluxoMet/Skyline2IsoCor |
1.0.0 |
skyline2isocor |
1.0.0 |
Up-to-date |
Metabolomics |
|
|
|
|
workflow4metabolomics |
https://github.com/MetaboHUB-MetaToul-FluxoMet/tools_w4m |
https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/skyline2isocor |
|
|
|
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 |
7 |
115 |
115 |
115 |
115 |
7 |
7 |
|
|
|
slice_image |
ip_slice_image |
Slice image |
2017-10-30 |
https://github.com/bmcv |
0.3-4 |
scikit-image |
|
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/slice_image/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/slice_image |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
4 |
5 |
80 |
103 |
0 |
0 |
0 |
0 |
1 |
1 |
24 |
24 |
0 |
0 |
0 |
0 |
127 |
104 |
6 |
5 |
|
|
|
smalt |
smalt |
SMALT aligns DNA sequencing reads with a reference genome. |
2017-09-19 |
http://www.sanger.ac.uk/science/tools/smalt-0 |
0.7.6 |
smalt |
0.7.6 |
Up-to-date |
Sequence Analysis |
|
|
|
|
nml |
https://sourceforge.net/projects/smalt/ |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/smalt |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
smart_domains |
smart_domains |
SMART domains |
2017-05-12 |
https://smart.embl.de/ |
0.1.0 |
perl-bioperl |
1.7.8 |
To update |
Sequence Analysis |
|
|
|
|
earlhaminst |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/smart_domains |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/smart_domains |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
smina |
smina |
Scoring and Minimization with smina |
2017-07-07 |
https://sourceforge.net/projects/smina/ |
1.0 |
smina |
2017.11.9 |
To update |
Computational chemistry |
|
|
|
|
earlhaminst |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/smina/ |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/smina |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
17 |
17 |
500 |
500 |
13 |
13 |
49 |
49 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
549 |
549 |
30 |
30 |
|
|
|
spades_fasta_header_fixer |
spades_header_fixer |
Fixes Spades Fasta ids |
2019-12-18 |
https://github.com/phac-nml/galaxy_tools |
1.1.2+galaxy1 |
sed |
|
To update |
Fasta Manipulation |
|
|
|
|
nml |
https://github.com/phac-nml/galaxy_tools |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/spades_header_fixer |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
spatyper |
spatyper |
Determines SPA type based on repeats in a submitted staphylococcal protein A fasta file. |
2023-03-16 |
https://github.com/HCGB-IGTP/spaTyper |
0.3.3 |
spatyper |
0.3.3 |
Up-to-date |
Sequence Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/spatyper |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/spatyper |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
split_image |
ip_split_image |
Split image along axes |
2025-03-07 |
https://github.com/bmcv |
2.2.3 |
numpy |
|
To update |
Imaging |
|
|
|
|
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_image |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
https://usegalaxy.eu/published/workflow?id=035f85c1615e0b7b, https://usegalaxy.eu/published/workflow?id=bc78c184fabcff1d, https://workflowhub.eu/workflows/1526?version=1, https://workflowhub.eu/workflows/1730?version=1 |
imaging/process-image-bioimageio |
|
split_labelmap |
ip_split_labelmap |
Split Labelmaps |
2018-12-11 |
https://github.com/bmcv |
0.2-3 |
scikit-image |
|
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_labelmaps/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_labelmap |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
2 |
3 |
35 |
51 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
51 |
35 |
3 |
2 |
|
|
|
spolpred |
spolpred |
A program for predicting the spoligotype from raw sequence reads |
2015-12-14 |
|
1.0.1 |
spolpred |
|
To update |
Sequence Analysis |
|
|
|
|
nml |
|
https://github.com/phac-nml/galaxy_tools/tree/master/tools/spolpred |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
spot_detection_2d |
ip_spot_detection_2d |
Spot detection in 2D image sequence |
2021-07-20 |
https://github.com/BMCV/galaxy-image-analysis |
0.1 |
giatools |
0.4.1 |
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Bioinformatics |
Imaging, Bioinformatics |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/spot_detection_2d/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/spot_detection_2d |
galaxy_image_analysis |
Galaxy Image Analysis |
Galaxy Image Analysis is mainly developed by the Biomedical Computer Vision (BMCV) Group at Heidelberg University. Its dedication is to provide tools for image analysis and image processing for the Galaxy platform. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
6 |
6 |
79 |
79 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
79 |
79 |
6 |
6 |
https://dev.workflowhub.eu/workflows/1374?version=1, https://usegalaxy.eu/published/workflow?id=e25f3ca3a1b4e4d8, https://usegalaxy.eu/published/workflow?id=ffa80e0637d079f2, https://workflowhub.eu/workflows/1499?version=1, https://workflowhub.eu/workflows/1528?version=1 |
imaging/2D-spot-detection, imaging/detection-of-mitoflashes |
|
srst2 |
srst2 |
Short Read Sequence Typing for Bacterial Pathogens |
2015-12-02 |
|
0.3.7 |
srst2 |
0.2.0 |
To update |
Sequence Analysis |
|
|
|
|
nml |
|
https://github.com/phac-nml/galaxy_tools/tree/master/tools/srst2 |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
42 |
42 |
316 |
316 |
1 |
1 |
71 |
71 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
387 |
387 |
43 |
43 |
https://workflowhub.eu/workflows/407?version=1 |
|
|
staramr |
staramr_search |
Scan genome contigs against the ResFinder, PlasmidFinder, and PointFinder antimicrobial resistance databases. |
2018-05-10 |
https://github.com/phac-nml/staramr |
0.11.0 |
staramr |
0.11.0 |
Up-to-date |
Sequence Analysis |
Antimicrobial resistance prediction |
Antimicrobial resistance prediction |
Microbiology, Public health and epidemiology, Infectious disease |
Microbiology, Public health and epidemiology, Infectious disease |
nml |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr |
staramr |
staramr |
staramr (*AMR) scans bacterial genome contigs against the ResFinder, PointFinder, and PlasmidFinder databases (used by the ResFinder webservice and other webservices offered by the Center for Genomic Epidemiology) and compiles a summary report of detected antimicrobial resistance genes. The star|* in staramr indicates that it can handle all of the ResFinder, PointFinder, and PlasmidFinder databases. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
2391 |
2435 |
25572 |
26123 |
1703 |
1703 |
11898 |
11898 |
952 |
952 |
7888 |
7888 |
52 |
52 |
5414 |
5414 |
51323 |
50772 |
5142 |
5098 |
https://dev.workflowhub.eu/workflows/1107?version=1, https://dev.workflowhub.eu/workflows/1168?version=2, https://usegalaxy.eu/published/workflow?id=007ce6405d196df3, https://usegalaxy.eu/published/workflow?id=152223c8aed27357, https://usegalaxy.eu/published/workflow?id=1ce523ef51f47134, https://usegalaxy.eu/published/workflow?id=249c115413f17f28, https://usegalaxy.eu/published/workflow?id=2e0075791f7fa384, https://usegalaxy.eu/published/workflow?id=32d2f5340098bcbd, https://usegalaxy.eu/published/workflow?id=34df701aa23a9fb3, https://usegalaxy.eu/published/workflow?id=374797e58377c40f, https://usegalaxy.eu/published/workflow?id=39837ca09374598b, https://usegalaxy.eu/published/workflow?id=41d207d06a32ba05, https://usegalaxy.eu/published/workflow?id=44e53ea319e07daa, https://usegalaxy.eu/published/workflow?id=4ddbffe4b3fef275, https://usegalaxy.eu/published/workflow?id=628062a8cf93261f, https://usegalaxy.eu/published/workflow?id=6d87481be47902e1, https://usegalaxy.eu/published/workflow?id=7aa32aba3fde0708, https://usegalaxy.eu/published/workflow?id=87231a6a7938cb95, https://usegalaxy.eu/published/workflow?id=9219557de92e0203, https://usegalaxy.eu/published/workflow?id=94c3d329c31c712f, https://usegalaxy.eu/published/workflow?id=a06b1ed5cd25922f, https://usegalaxy.eu/published/workflow?id=abe85758e77c78e6, https://usegalaxy.eu/published/workflow?id=b203dec6ee6da2fd, https://usegalaxy.eu/published/workflow?id=b2b46e71046b1999, https://usegalaxy.eu/published/workflow?id=b4de76c0a4d0e23a, https://usegalaxy.eu/published/workflow?id=c48807045e258dd8, https://usegalaxy.eu/published/workflow?id=dc7107896a3f2964, https://usegalaxy.eu/published/workflow?id=e37cc0b64774561b, https://usegalaxy.eu/published/workflow?id=ea485dbabc76488d, https://usegalaxy.eu/published/workflow?id=eb5ab8bc82569eee, https://usegalaxy.eu/published/workflow?id=ecf48fa50af560a0, https://usegalaxy.eu/published/workflow?id=f30f8e7dcd50cd0d, https://usegalaxy.org.au/published/workflow?id=2e29b21cdec7d0cc, https://usegalaxy.org.au/published/workflow?id=35f39173f0ac9179, https://usegalaxy.org.au/published/workflow?id=92fcdd490831c6c5, https://usegalaxy.org.au/published/workflow?id=c9b7de574fb2f2d5, https://usegalaxy.org.au/published/workflow?id=d9571b3dfef34e5e, https://usegalaxy.org/published/workflow?id=2078a54de1f2628d, https://usegalaxy.org/published/workflow?id=2b4b1fe82258f303, https://usegalaxy.org/published/workflow?id=3c177fdf38311118, https://usegalaxy.org/published/workflow?id=547f86db467bf620, https://usegalaxy.org/published/workflow?id=aaf8e740b3f8e2c0, https://usegalaxy.org/published/workflow?id=d4f0a7ccb09f1e55, https://usegalaxy.org/published/workflow?id=ef187f85b103d858, https://usegalaxy.org/published/workflow?id=fde774a049875466, https://workflowhub.eu/workflows/1049?version=7, https://workflowhub.eu/workflows/1189?version=2, https://workflowhub.eu/workflows/1477?version=1, https://workflowhub.eu/workflows/1488?version=1, https://workflowhub.eu/workflows/406?version=1, https://workflowhub.eu/workflows/470?version=1 |
genome-annotation/amr-gene-detection, microbiome/plasmid-metagenomics-nanopore |
|
stringmlst |
stringmlst |
Rapid and accurate identification of the sequence type (ST) |
2016-10-19 |
|
1.1.0 |
stringMLST |
0.6.3 |
To update |
Sequence Analysis |
|
|
|
|
nml |
|
https://github.com/phac-nml/galaxy_tools/tree/master/tools/stringmlst |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
suite_plasmid_profiler |
|
Plasmid Profiler suite defining all dependencies for Plasmid Profiler |
2016-11-07 |
|
|
|
|
To update |
Sequence Analysis |
|
|
|
|
nml |
|
https://github.com/phac-nml/galaxy_tools/tree/master/tools/plasmid_profiler_suite |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
suite_qiime2_core |
|
|
2022-08-29 |
|
|
|
|
To update |
Statistics, Metagenomics, Sequence Analysis |
|
|
|
|
q2d2 |
|
https://github.com/qiime2/galaxy-tools/tree/main/tool_collections/suite_qiime2_core |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
superdsm |
ip_superdsm |
Globally optimal segmentation method based on superadditivity and deformable shape models for cell nuclei in fluorescence microscopy images |
2023-06-20 |
https://github.com/bmcv |
0.2.0 |
superdsm |
0.4.0 |
To update |
Imaging |
Image analysis |
Image analysis |
|
|
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm |
superdsm |
SuperDSM |
SuperDSM is a globally optimal segmentation method based on superadditivity and deformable shape models for cell nuclei in fluorescence microscopy images and beyond. |
superdsm |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
5 |
5 |
26 |
26 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
26 |
26 |
5 |
5 |
|
|
|
t_coffee |
t_coffee |
T-Coffee |
2016-12-13 |
https://tcoffee.org/ |
13.45.0.4846264 |
t-coffee |
13.46.0.919e8c6b |
To update |
Sequence Analysis |
|
|
|
|
earlhaminst |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/t_coffee |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/t_coffee |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
227 |
253 |
3694 |
9235 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
9236 |
3695 |
254 |
228 |
https://usegalaxy.eu/published/workflow?id=2cec6a39cd496f09 |
|
|
tree_relabeler |
tree_relabel |
Relabels the tips of a newick formatted tree. |
2019-04-15 |
|
1.1.0 |
perl-bioperl |
1.7.8 |
To update |
Text Manipulation |
|
|
|
|
nml |
https://github.com/phac-nml/galaxy_tools/blob/master/tools/tree_relabeler |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/tree_relabeler |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
treebest_best |
treebest_best |
TreeBeST best |
2015-08-06 |
https://treesoft.sourceforge.net/treebest.shtml |
1.9.2.post0 |
treebest |
1.9.2.post1 |
To update |
Phylogenetics |
Phylogenetic tree visualisation, Phylogenetic analysis, Phylogenetic inference (from molecular sequences) |
Phylogenetic tree visualisation, Phylogenetic inference (from molecular sequences) |
Phylogenetics |
Phylogenetics |
earlhaminst |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/TreeBest |
https://github.com/TGAC/earlham-galaxytools/tree/main/tools/TreeBest |
treebest |
TreeBeST |
TreeBeST, which stands for (gene) Tree Building guided by Species Tree, is a versatile program that builds, manipulates and displays phylogenetic trees. It is particularly designed for building gene trees with a known species tree and is highly efficient and accurate.TreeBeST is previously known as NJTREE. It has been largely used in the TreeFam database, Ensembl Compara and OPTIC database of Chris Ponting group. |
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
48 |
54 |
994 |
1025 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1025 |
994 |
54 |
48 |
https://usegalaxy.eu/published/workflow?id=2cec6a39cd496f09 |
|
|
tripal |
analysis_add_analysis, analysis_get_analyses, analysis_load_blast, analysis_load_fasta, analysis_load_gff3, analysis_load_go, analysis_load_interpro, analysis_sync, db_index, db_populate_mviews, entity_publish, expression_add_biomaterial, expression_add_expression, expression_delete_biomaterials, expression_get_biomaterials, expression_sync_biomaterials, feature_delete_orphans, feature_sync, organism_add_organism, organism_get_organisms, organism_sync, phylogeny_sync |
Galaxy tools allowing to load data into a remote Tripal server.Tripal is a toolkit for construction of online biological (genetics, genomics, breeding, etc), community database,and is a member of the GMOD family of tools. Tripal provides by default integration with the GMOD Chado database schema and Drupal, a popular Content Management Systems (CMS).https://github.com/galaxy-genome-annotation/python-tripal |
2017-05-29 |
https://github.com/galaxy-genome-annotation/python-tripal |
|
python-tripal |
3.2.1 |
To update |
Web Services |
|
|
|
|
gga |
https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal |
https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
unzip |
unzip |
Unzip file |
2019-08-01 |
https://github.com/bmcv |
6.0 |
unzip |
|
To update |
Convert Formats |
|
|
|
|
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/unzip/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/unzip |
|
|
|
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1482 |
1540 |
7315 |
7611 |
1 |
1 |
1 |
1 |
319 |
319 |
2692 |
2692 |
39 |
39 |
114 |
114 |
10418 |
10122 |
1899 |
1841 |
https://dev.workflowhub.eu/workflows/1254?version=2, https://dev.workflowhub.eu/workflows/1274?version=2, https://dev.workflowhub.eu/workflows/1292?version=2, https://usegalaxy.eu/published/workflow?id=3dbee72d7c550b0c, https://usegalaxy.eu/published/workflow?id=466bdd8ba7b67264, https://usegalaxy.eu/published/workflow?id=afad9a17a80bb26d, https://usegalaxy.eu/published/workflow?id=c5de0b794849e1b1, https://usegalaxy.eu/published/workflow?id=edf7e2128f5aef8d, https://usegalaxy.fr/published/workflow?id=8b1678200a1d157a, https://usegalaxy.org.au/published/workflow?id=2a1e4de0dc77bbed, https://workflowhub.eu/workflows/115?version=1, https://workflowhub.eu/workflows/1208?version=1, https://workflowhub.eu/workflows/1503?version=1, https://workflowhub.eu/workflows/1528?version=1, https://workflowhub.eu/workflows/1635?version=1, https://workflowhub.eu/workflows/1702?version=1, https://workflowhub.eu/workflows/655?version=1 |
ecology/Ecoregionalization_tutorial, ecology/Obitools-metabarcoding, ecology/ecoregiolifetraits, imaging/2D-spot-detection, imaging/hela-screen-analysis, imaging/imaging-introduction, imaging/object-tracking-using-cell-profiler, imaging/voronoi-segmentation, sequence-analysis/Manage_AB1_Sanger, single-cell/scrna-ncbi-anndata |
|
visceral_evaluatesegmentation |
ip_visceral_evaluatesegmentation |
Visceral Project - Evaluate Segmentation Tool |
2024-09-30 |
https://github.com/bmcv |
0.5-2 |
visceral-evaluatesegmentation |
2015.07.03 |
To update |
Imaging |
|
|
|
|
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/visceral-evaluatesegmentation |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/visceral_evaluatesegmentation |
|
|
|
evaluatesegmentation-tool |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
1 |
1 |
13 |
25 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
25 |
13 |
1 |
1 |
|
|
|
voronoi_tesselation |
voronoi_tessellation |
Compute Voronoi tesselation |
2024-03-09 |
https://github.com/bmcv |
0.22.0 |
scikit-image |
|
To update |
Imaging |
Image analysis, Image annotation, Visualisation, Data handling |
Image analysis, Image annotation, Visualisation, Data handling |
Imaging, Software engineering, Literature and language |
Imaging, Software engineering, Literature and language |
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/voronoi_tesselation |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/voronoi_tessellation |
scikit-image |
scikit-image |
Scikit-image contains image processing algorithms for SciPy, including IO, morphology, filtering, warping, color manipulation, object detection, etc. |
scikit-image |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
61 |
61 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
61 |
61 |
4 |
4 |
https://usegalaxy.eu/published/workflow?id=23030421cd9fcfb2, https://usegalaxy.eu/published/workflow?id=bc78c184fabcff1d, https://workflowhub.eu/workflows/1522?version=1, https://workflowhub.eu/workflows/1730?version=1 |
imaging/voronoi-segmentation |
|
w4mclassfilter |
w4mclassfilter |
Filter W4M data by values or metadata |
2018-08-06 |
https://github.com/HegemanLab/w4mclassfilter_galaxy_wrapper |
0.98.19 |
r-base |
|
To update |
Metabolomics |
|
|
|
|
eschen42 |
https://github.com/HegemanLab/w4mclassfilter_galaxy_wrapper/tree/master |
https://github.com/HegemanLab/w4mclassfilter_galaxy_wrapper/tree/master/tools/w4mclassfilter |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
9 |
10 |
2289 |
2837 |
0 |
0 |
0 |
0 |
4 |
4 |
1518 |
1680 |
0 |
0 |
0 |
0 |
4517 |
3807 |
14 |
13 |
|
|
|
w4mconcatenate |
W4Mconcatenate |
[W4M][Utils] concatenate two Metadata tables |
2024-07-10 |
http://workflow4metabolomics.org |
1.0.0+galaxy1 |
r-base |
|
To update |
Metabolomics |
|
|
|
|
workflow4metabolomics |
https://github.com/workflow4metabolomics/tools-metabolomics |
https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/w4mconcatenate |
|
|
|
|
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
4 |
4 |
4 |
4 |
1 |
1 |
|
|
|
w4mcorcov |
w4mcorcov |
OPLS-DA Contrasts of Univariate Results |
2018-08-06 |
https://github.com/HegemanLab/w4mcorcov_galaxy_wrapper |
0.98.18 |
r-base |
|
To update |
Metabolomics |
|
|
|
|
eschen42 |
https://github.com/HegemanLab/w4mcorcov_galaxy_wrapper/tree/master |
https://github.com/HegemanLab/w4mcorcov_galaxy_wrapper/tree/master/tools/w4mcorcov |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
11 |
11 |
239 |
376 |
0 |
0 |
0 |
0 |
2 |
2 |
10 |
10 |
0 |
0 |
0 |
0 |
386 |
249 |
13 |
13 |
|
|
|
w4mjoinpn |
w4mjoinpn |
Join positive- and negative-mode W4M datasets |
2018-08-06 |
https://github.com/HegemanLab/w4mjoinpn_galaxy_wrapper |
0.98.2 |
coreutils |
8.25 |
To update |
Metabolomics |
|
|
|
|
eschen42 |
https://github.com/HegemanLab/w4mjoinpn_galaxy_wrapper/tree/master |
https://github.com/HegemanLab/w4mjoinpn_galaxy_wrapper/tree/master/tools/w4mjoinpn |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
6 |
7 |
149 |
171 |
0 |
0 |
0 |
0 |
2 |
2 |
7 |
7 |
0 |
0 |
0 |
0 |
178 |
156 |
9 |
8 |
|
|
|
wade |
wade |
identify regions of interest |
2019-09-20 |
https://github.com/phac-nml/wade |
0.2.5+galaxy1 |
wade |
0.2.6 |
To update |
Sequence Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/wade |
https://github.com/phac-nml/galaxy_tools/tree/master/tools/wade |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
wsi_extract_top_view |
ip_wsi_extract_top_view |
WSI Extract Top View |
2017-10-30 |
https://github.com/bmcv |
0.2-2 |
scikit-image |
|
To update |
Imaging |
|
|
|
|
imgteam |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/wsi_extract_top_view/ |
https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/wsi_extract_top_view |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
2 |
3 |
25 |
38 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
38 |
25 |
3 |
2 |
|
|
|
xcms |
abims_xcms_fillPeaks, abims_xcms_group, abims_xcms_refine, abims_xcms_retcor, abims_xcms_summary, abims_xcms_xcmsSet, msnbase_readmsdata, xcms_export_samplemetadata, xcms_merge, xcms_plot_chromatogram, xcms_plot_eic, xcms_plot_raw |
|
2023-05-24 |
https://github.com/sneumann/xcms |
4.4.0 |
bioconductor-xcms |
4.4.0 |
Up-to-date |
Metabolomics |
Mass spectrum visualisation, Label-free quantification, Validation, Chromatographic alignment, Peak detection, Chromatogram visualisation, Data filtering |
Mass spectrum visualisation, Label-free quantification, Validation, Chromatographic alignment, Peak detection, Chromatogram visualisation |
Biological imaging, Data visualisation, Metabolomics |
Data visualisation, Metabolomics |
workflow4metabolomics |
https://github.com/workflow4metabolomics/tools-metabolomics/ |
https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/xcms |
XCMS |
xcms |
Framework for processing and visualization of chromatographically separated and single-spectra mass spectral data. The packages enables imports from AIA/ANDI NetCDF, mzXML, mzData and mzML files and preprocesses data for high-throughput, untargeted analyte profiling. |
|
9 |
11 |
12 |
12 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
10 |
9 |
0 |
257 |
266 |
29988 |
37596 |
94 |
94 |
8230 |
8230 |
52 |
54 |
5312 |
5621 |
1274 |
1274 |
2676707 |
2677268 |
2728715 |
2720237 |
1688 |
1677 |
https://dev.workflowhub.eu/workflows/1065?version=1, https://dev.workflowhub.eu/workflows/1119?version=2, https://usegalaxy.eu/published/workflow?id=2179ba1c33f77f7e, https://usegalaxy.fr/published/workflow?id=06fa7dd6eea42350, https://usegalaxy.fr/published/workflow?id=1407c1703f360f07, https://usegalaxy.fr/published/workflow?id=15275ba7c23028ed, https://usegalaxy.fr/published/workflow?id=180744a2f8dca6eb, https://usegalaxy.fr/published/workflow?id=18b2f77f2915adc7, https://usegalaxy.fr/published/workflow?id=192ff9aa79217899, https://usegalaxy.fr/published/workflow?id=19e99a5c09c01bb7, https://usegalaxy.fr/published/workflow?id=26a3e5741d66982a, https://usegalaxy.fr/published/workflow?id=26bdb32c017d798c, https://usegalaxy.fr/published/workflow?id=2ee479308227a926, https://usegalaxy.fr/published/workflow?id=32f903738292a67f, https://usegalaxy.fr/published/workflow?id=3c41c4c5a6332c25, https://usegalaxy.fr/published/workflow?id=4384e12fe70235d6, https://usegalaxy.fr/published/workflow?id=49e59327f299e9f7, https://usegalaxy.fr/published/workflow?id=4aa393a1f192a495, https://usegalaxy.fr/published/workflow?id=57748aa2cecf0405, https://usegalaxy.fr/published/workflow?id=5964606a3836cbdf, https://usegalaxy.fr/published/workflow?id=5bfbe77fd6b37c45, https://usegalaxy.fr/published/workflow?id=5ec8a143f82a8c90, https://usegalaxy.fr/published/workflow?id=6895bf9cff915ba1, https://usegalaxy.fr/published/workflow?id=7a790b0acf8ba14d, https://usegalaxy.fr/published/workflow?id=7cc77d6cdd8de027, https://usegalaxy.fr/published/workflow?id=98bb6a831a2b399d, https://usegalaxy.fr/published/workflow?id=b6311795ae10032b, https://usegalaxy.fr/published/workflow?id=bb69fa998b900cb8, https://usegalaxy.fr/published/workflow?id=bcd348178335a19b, https://usegalaxy.fr/published/workflow?id=cca13353d553319e, https://usegalaxy.fr/published/workflow?id=dc17a87057dec748, https://usegalaxy.fr/published/workflow?id=e3d00bdef9addd7c, https://usegalaxy.fr/published/workflow?id=e6a55d00f1364794, https://usegalaxy.fr/published/workflow?id=e6f26a543c3e044a, https://usegalaxy.fr/published/workflow?id=f49e102f63d3e2bb, https://usegalaxy.org.au/published/workflow?id=f9e5caaf08a450ec, https://usegalaxy.org.au/published/workflow?id=fa0243ff9b5ca997, https://usegalaxy.org/published/workflow?id=3edd2957ecd26d6c, https://usegalaxy.org/published/workflow?id=650f3eb7647b4508, https://usegalaxy.org/published/workflow?id=aeeaf3e06a13bc22, https://usegalaxy.org/published/workflow?id=b38215b4ba7a9793, https://workflowhub.eu/workflows/1582?version=1, https://workflowhub.eu/workflows/1584?version=1, https://workflowhub.eu/workflows/677?version=2, https://workflowhub.eu/workflows/680?version=2 |
metabolomics/gc_ms_with_xcms, metabolomics/gcms, metabolomics/lcms, metabolomics/lcms-preprocessing |
|
10x_bamtofastq |
10x_bamtofastq |
Converts 10x Genomics BAM to FASTQ |
2022-05-10 |
https://github.com/10XGenomics/bamtofastq |
1.4.1 |
10x_bamtofastq |
1.4.1 |
Up-to-date |
Convert Formats, Single Cell |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/10x_bamtofastq |
https://github.com/bgruening/galaxytools/tree/master/tools/10x_bamtofastq |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
89 |
89 |
321 |
321 |
11 |
11 |
21 |
21 |
2 |
2 |
25 |
25 |
0 |
0 |
0 |
0 |
367 |
367 |
102 |
102 |
|
|
|
Wound healing scratch assay image analysis |
woundhealing_scratch_assay |
Tool to automate quantification of wound healing in high-throughput microscopy scratch assays |
2024-02-29 |
https://git.embl.de/grp-cba/wound-healing-htm-screen |
1.6.1 |
fiji-morpholibj |
1.6.1 |
Up-to-date |
Imaging |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools |
https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/woundhealing |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
31 |
31 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
31 |
31 |
1 |
1 |
https://workflowhub.eu/workflows/782?version=1 |
|
|
add_line_to_file |
add_line_to_file |
Adds a text line to the beginning or end of a file. |
2020-11-01 |
|
0.1.0 |
coreutils |
8.25 |
To update |
Text Manipulation |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/add_line_to_file |
https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/add_line_to_file |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
410 |
410 |
17866 |
17866 |
257 |
257 |
1873 |
1873 |
39 |
39 |
496 |
496 |
0 |
0 |
0 |
0 |
20235 |
20235 |
706 |
706 |
https://dev.workflowhub.eu/workflows/1257?version=1, https://usegalaxy.eu/published/workflow?id=1b10ece62e745125, https://usegalaxy.eu/published/workflow?id=1da86d74f8535f4e, https://usegalaxy.eu/published/workflow?id=220961d803697f54, https://usegalaxy.eu/published/workflow?id=2424282f793f0f1b, https://usegalaxy.eu/published/workflow?id=2b888e200dfd91bc, https://usegalaxy.eu/published/workflow?id=2c3d05023c02113e, https://usegalaxy.eu/published/workflow?id=5ed38d8114bcd6f7, https://usegalaxy.eu/published/workflow?id=6ed1016dfdf9f928, https://usegalaxy.eu/published/workflow?id=b14845359b702444, https://usegalaxy.eu/published/workflow?id=cb2df493f5e334f7, https://usegalaxy.eu/published/workflow?id=ce1712139b4a4273, https://usegalaxy.eu/published/workflow?id=d1357759d0962144, https://usegalaxy.eu/published/workflow?id=dd73bdcbac8649a3, https://usegalaxy.eu/published/workflow?id=e3b0b521ee8f2aef, https://usegalaxy.eu/published/workflow?id=ff2fd4a4bb27d859, https://usegalaxy.org.au/published/workflow?id=5cd804644a34c8fd, https://usegalaxy.org.au/published/workflow?id=92fcdd490831c6c5, https://usegalaxy.org.au/published/workflow?id=a335b9c9103b57ad, https://usegalaxy.org/published/workflow?id=195a608c481040de, https://usegalaxy.org/published/workflow?id=28c7e8269d478244, https://usegalaxy.org/published/workflow?id=634bbef1f67a0e30, https://workflowhub.eu/workflows/1199?version=2, https://workflowhub.eu/workflows/1552?version=1, https://workflowhub.eu/workflows/249?version=4, https://workflowhub.eu/workflows/403?version=9, https://workflowhub.eu/workflows/607?version=1, https://workflowhub.eu/workflows/629?version=1, https://workflowhub.eu/workflows/794?version=2 |
microbiome/pathogen-detection-from-nanopore-foodborne-data, single-cell/bulk-music-2-preparescref |
|
add_value |
addValue |
Add a value as a new column. |
2012-12-04 |
|
1.0.1 |
perl |
|
To update |
Text Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/add_value |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/add_value |
|
|
|
|
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
1 |
1 |
0 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
1378 |
1747 |
48863 |
386572 |
1230 |
6294 |
19044 |
297704 |
210 |
244 |
4193 |
4765 |
29 |
30 |
238 |
248 |
689289 |
72338 |
8315 |
2847 |
https://dev.workflowhub.eu/workflows/1014?version=1, https://dev.workflowhub.eu/workflows/1113?version=2, https://dev.workflowhub.eu/workflows/1199?version=2, https://dev.workflowhub.eu/workflows/1204?version=2, https://dev.workflowhub.eu/workflows/1246?version=2, https://dev.workflowhub.eu/workflows/1250?version=2, https://dev.workflowhub.eu/workflows/1324?version=3, https://usegalaxy.eu/published/workflow?id=098f43ded1b5fa7f, https://usegalaxy.eu/published/workflow?id=0e492839192d26e0, https://usegalaxy.eu/published/workflow?id=1031e4c4f18e020e, https://usegalaxy.eu/published/workflow?id=16418e8b023ff226, https://usegalaxy.eu/published/workflow?id=171d6fca2c3339e2, https://usegalaxy.eu/published/workflow?id=1749616cec69fb00, https://usegalaxy.eu/published/workflow?id=31c6dcd3a25620df, https://usegalaxy.eu/published/workflow?id=389d992ff7268247, https://usegalaxy.eu/published/workflow?id=4e57c5cf750afadd, https://usegalaxy.eu/published/workflow?id=5e09d5e991009cda, https://usegalaxy.eu/published/workflow?id=65612d13b50547c8, https://usegalaxy.eu/published/workflow?id=668a9f5da768fa30, https://usegalaxy.eu/published/workflow?id=7d44ea091d437edf, https://usegalaxy.eu/published/workflow?id=7dd7908f4c8d722a, https://usegalaxy.eu/published/workflow?id=82ef590b5821805d, https://usegalaxy.eu/published/workflow?id=871f01c2f3fbb687, https://usegalaxy.eu/published/workflow?id=8d00a8b70b0c019c, https://usegalaxy.eu/published/workflow?id=99c4dce722c023d1, https://usegalaxy.eu/published/workflow?id=9aa290ce1927d700, https://usegalaxy.eu/published/workflow?id=9c5a0596956064a6, https://usegalaxy.eu/published/workflow?id=a6ade348ef143292, https://usegalaxy.eu/published/workflow?id=b4642b1e0985f76b, https://usegalaxy.eu/published/workflow?id=c696b37d1bf68e9b, https://usegalaxy.eu/published/workflow?id=c94a1d028357c81e, https://usegalaxy.eu/published/workflow?id=cc385bd4376a907c, https://usegalaxy.eu/published/workflow?id=d2a9d4eb5b3c72a2, https://usegalaxy.eu/published/workflow?id=d9535e4afec8866b, https://usegalaxy.eu/published/workflow?id=f7a7c72489d6b3d4, https://usegalaxy.eu/published/workflow?id=ff2fd4a4bb27d859, https://usegalaxy.org.au/published/workflow?id=14e80b7f9f68ec2a, https://usegalaxy.org.au/published/workflow?id=2fee25e188531691, https://usegalaxy.org.au/published/workflow?id=446ba22c3d2f3367, https://usegalaxy.org.au/published/workflow?id=462beb964c99619d, https://usegalaxy.org.au/published/workflow?id=499245b3a113e06d, https://usegalaxy.org.au/published/workflow?id=518d27f68e05a356, https://usegalaxy.org.au/published/workflow?id=65a659982f955743, https://usegalaxy.org.au/published/workflow?id=66e530368fd40abd, https://usegalaxy.org.au/published/workflow?id=7cddb345877f08bf, https://usegalaxy.org.au/published/workflow?id=869440d35a618836, https://usegalaxy.org.au/published/workflow?id=9016b2be61f89053, https://usegalaxy.org.au/published/workflow?id=b808cd1c0090b068, https://usegalaxy.org.au/published/workflow?id=cf775b8ff0745456, https://usegalaxy.org.au/published/workflow?id=e6552643a3713b50, https://usegalaxy.org/published/workflow?id=138311394c077827, https://usegalaxy.org/published/workflow?id=19c9c8cc3c813bda, https://usegalaxy.org/published/workflow?id=1d923ce15c17b1fe, https://usegalaxy.org/published/workflow?id=1e1a299825f27f11, https://usegalaxy.org/published/workflow?id=1e264fc06d87899f, https://usegalaxy.org/published/workflow?id=2b298d673d93309d, https://usegalaxy.org/published/workflow?id=2d64e09025ae8ed4, https://usegalaxy.org/published/workflow?id=2f7638035fb889ac, https://usegalaxy.org/published/workflow?id=30507545aa971637, https://usegalaxy.org/published/workflow?id=3a172bd71ea15178, https://usegalaxy.org/published/workflow?id=44b27a1296633366, https://usegalaxy.org/published/workflow?id=44bcae0e352563f9, https://usegalaxy.org/published/workflow?id=450c2181f89e6b23, https://usegalaxy.org/published/workflow?id=55911cad792d4f59, https://usegalaxy.org/published/workflow?id=55aa743125c2465d, https://usegalaxy.org/published/workflow?id=578f46106f72c971, https://usegalaxy.org/published/workflow?id=59347cc210c4cdbc, https://usegalaxy.org/published/workflow?id=5de035c08af915ea, https://usegalaxy.org/published/workflow?id=66748e20a243eafe, https://usegalaxy.org/published/workflow?id=68a9f03d99676bdc, https://usegalaxy.org/published/workflow?id=7294f75ad01ca7ed, https://usegalaxy.org/published/workflow?id=768cee70d9aa8cc6, https://usegalaxy.org/published/workflow?id=7ca9c5203520ca7e, https://usegalaxy.org/published/workflow?id=7da0b02000e3b9e8, https://usegalaxy.org/published/workflow?id=80fa8f0fe6330b88, https://usegalaxy.org/published/workflow?id=81183f40d2f3e395, https://usegalaxy.org/published/workflow?id=81c0d753e90df858, https://usegalaxy.org/published/workflow?id=85d825931edf4a64, https://usegalaxy.org/published/workflow?id=896d29573ea3e574, https://usegalaxy.org/published/workflow?id=8b1eedebcb94ba93, https://usegalaxy.org/published/workflow?id=9057e2e000a7ef02, https://usegalaxy.org/published/workflow?id=916661b10327d8dc, https://usegalaxy.org/published/workflow?id=941ced9f12eecd3c, https://usegalaxy.org/published/workflow?id=a0bffeb8cc263a5b, https://usegalaxy.org/published/workflow?id=a666aaaa32f62487, https://usegalaxy.org/published/workflow?id=b1b4fc510099d592, https://usegalaxy.org/published/workflow?id=b8742810ac30429d, https://usegalaxy.org/published/workflow?id=bf79271a438ffa54, https://usegalaxy.org/published/workflow?id=c17fa637bcdec86e, https://usegalaxy.org/published/workflow?id=c7aca0f5bb660907, https://usegalaxy.org/published/workflow?id=c88708cd216dbc17, https://usegalaxy.org/published/workflow?id=c88fe3dc11bc4905, https://usegalaxy.org/published/workflow?id=cd1badac800122c2, https://usegalaxy.org/published/workflow?id=d04c5af15221817e, https://usegalaxy.org/published/workflow?id=d6d49e6c823e7d54, https://usegalaxy.org/published/workflow?id=d77d0f5ca5cae2d1, https://usegalaxy.org/published/workflow?id=d851f8436497dd1c, https://usegalaxy.org/published/workflow?id=e0da87cadb1e6d5f, https://usegalaxy.org/published/workflow?id=e10859cc568da07c, https://usegalaxy.org/published/workflow?id=e3e646407e3f921d, https://usegalaxy.org/published/workflow?id=e4f1cce653812a22, https://usegalaxy.org/published/workflow?id=e50e36a25bae863c, https://usegalaxy.org/published/workflow?id=e5c066644cc7cc07, https://usegalaxy.org/published/workflow?id=e75a7802d2941f31, https://usegalaxy.org/published/workflow?id=e8b1d1e5e889c986, https://usegalaxy.org/published/workflow?id=f18e6fa5270fcd37, https://usegalaxy.org/published/workflow?id=f6ee07c7edf170fb, https://workflowhub.eu/workflows/1057?version=8, https://workflowhub.eu/workflows/1189?version=2, https://workflowhub.eu/workflows/1267?version=1, https://workflowhub.eu/workflows/1369?version=1, https://workflowhub.eu/workflows/1434?version=1, https://workflowhub.eu/workflows/1438?version=1, https://workflowhub.eu/workflows/1550?version=1, https://workflowhub.eu/workflows/1638?version=1, https://workflowhub.eu/workflows/1665?version=1, https://workflowhub.eu/workflows/1688?version=1 |
assembly/ecoli_comparison, ecology/ref-based-rad-seq, proteomics/database-handling, single-cell/scrna-case_cell-cycle, transcriptomics/differential-isoform-expression |
|
agat |
agat |
GTF/GFF analysis toolkit |
2023-05-22 |
https://github.com/NBISweden/AGAT |
1.4.0 |
agat |
1.5.1 |
To update |
Convert Formats, Statistics, Fasta Manipulation |
Data handling, Genome annotation |
Data handling, Genome annotation |
Genomics |
Genomics |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/agat |
https://github.com/bgruening/galaxytools/tree/master/tools/agat |
agat |
AGAT |
Another Gff Analysis Toolkit (AGAT)Suite of tools to handle gene annotations in any GTF/GFF format. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
339 |
339 |
5444 |
5444 |
57 |
57 |
302 |
302 |
28 |
28 |
485 |
485 |
7 |
7 |
140 |
140 |
6371 |
6371 |
431 |
431 |
https://usegalaxy.org/published/workflow?id=951575e9a352301c, https://workflowhub.eu/workflows/1096?version=2 |
|
|
align_back_trans |
align_back_trans |
Thread nucleotides onto a protein alignment (back-translation) |
2014-02-18 |
https://github.com/peterjc/pico_galaxy/tree/master/tools/align_back_trans |
0.0.10 |
biopython |
1.70 |
To update |
Fasta Manipulation, Sequence Analysis |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/align_back_trans |
https://github.com/peterjc/pico_galaxy/tree/master/tools/align_back_trans |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
33 |
36 |
556 |
588 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
588 |
556 |
36 |
33 |
|
|
|
antarna |
antarna |
antaRNA uses ant colony optimization to solve the inverse folding problem in RNA research . |
2015-04-30 |
|
1.1 |
antarna |
2.0.1.2 |
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/antarna/ |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/antarna |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
5 |
7 |
284 |
306 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
306 |
284 |
7 |
5 |
|
|
|
antismash |
antismash |
Antismash allows the genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters |
2015-02-28 |
https://antismash.secondarymetabolites.org |
6.1.1 |
antismash |
8.0.2 |
To update |
Sequence Analysis |
Sequence clustering, Gene prediction, Differential gene expression analysis |
Sequence clustering, Gene prediction, Differential gene expression analysis |
Molecular interactions, pathways and networks, Gene and protein families |
Molecular interactions, pathways and networks, Gene and protein families |
bgruening |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash |
https://github.com/bgruening/galaxytools/tree/master/tools/antismash |
antismash |
antiSMASH |
Rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genomes. It integrates and cross-links with a large number of in silico secondary metabolite analysis tools that have been published earlier. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
852 |
962 |
24780 |
25468 |
795 |
795 |
7459 |
7459 |
210 |
210 |
7834 |
7834 |
0 |
0 |
0 |
0 |
40761 |
40073 |
1967 |
1857 |
https://dev.workflowhub.eu/workflows/1145?version=1, https://usegalaxy.eu/published/workflow?id=0461bbd1f96292e2, https://usegalaxy.eu/published/workflow?id=0ab3e47ebd3b520e, https://usegalaxy.eu/published/workflow?id=24eaa682897379c8, https://usegalaxy.eu/published/workflow?id=33312e5643279e8a, https://usegalaxy.eu/published/workflow?id=5be158931abca947, https://usegalaxy.eu/published/workflow?id=6984990d0ac2e1e6, https://usegalaxy.eu/published/workflow?id=6a5c39c1d38a10c2, https://usegalaxy.eu/published/workflow?id=6d87481be47902e1, https://usegalaxy.eu/published/workflow?id=9a60ecf98d4f8134, https://usegalaxy.eu/published/workflow?id=a448400f69594135, https://usegalaxy.eu/published/workflow?id=bf48b0eb15e8ff75, https://usegalaxy.eu/published/workflow?id=cc59ae1a9878942c, https://usegalaxy.eu/published/workflow?id=edbaf66c1e97ebdb, https://usegalaxy.eu/published/workflow?id=f141db5179ea8422, https://usegalaxy.org.au/published/workflow?id=35f39173f0ac9179, https://usegalaxy.org/published/workflow?id=c451e4dca9981ed0, https://workflowhub.eu/workflows/1558?version=1, https://workflowhub.eu/workflows/37?version=1, https://workflowhub.eu/workflows/38?version=1, https://workflowhub.eu/workflows/39?version=1, https://workflowhub.eu/workflows/40?version=1 |
genome-annotation/secondary-metabolite-discovery |
|
aresite2 |
AREsite2_REST |
AREsite2 REST Interface |
2017-02-01 |
http://rna.tbi.univie.ac.at/AREsite |
0.1.2 |
python |
|
To update |
RNA, Data Source, Sequence Analysis |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/aresite2 |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/aresite2 |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
11 |
13 |
52 |
76 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
76 |
52 |
13 |
11 |
https://usegalaxy.eu/published/workflow?id=4e57c5cf750afadd |
|
|
atactk_trim_adapters |
atactk_trim_adapters |
Trim adapters from paired-end HTS reads. |
2018-06-20 |
https://github.com/ParkerLab/atactk/ |
0.1.6 |
atactk |
0.1.9 |
To update |
Fastq Manipulation |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/blob/master/tools/trim_adapters |
https://github.com/bgruening/galaxytools/tree/master/tools/atactk_trim_adapters |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
65 |
78 |
223 |
291 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
291 |
223 |
78 |
65 |
|
|
|
bamhash |
bamhash |
Hash BAM and FASTQ files to verify data integrity |
2015-09-17 |
https://github.com/DecodeGenetics/BamHash |
1.1 |
bamhash |
1.1 |
Up-to-date |
Sequence Analysis |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/bamhash |
https://github.com/bgruening/galaxytools/tree/master/tools/bamhash |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
45 |
50 |
134 |
188 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
188 |
134 |
50 |
45 |
|
|
|
barcode_collapse |
barcode_collapse |
Paired End randomer aware duplicate removal algorithm |
2016-06-11 |
https://github.com/YeoLab/gscripts |
0.1.0 |
pysam |
0.23.3 |
To update |
RNA, Sequence Analysis |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/barcode_collapse |
https://github.com/bgruening/galaxytools/tree/master/tools/barcode_collapse |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
basecoverage |
gops_basecoverage_1 |
Base Coverage of all intervals |
2014-04-01 |
https://github.com/galaxyproject/gops |
1.0.0 |
bx-python |
0.14.0 |
To update |
Genomic Interval Operations |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/basecoverage |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/gops/basecoverage |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
18 |
35 |
192 |
308 |
287 |
2291 |
1957 |
45635 |
23 |
36 |
363 |
545 |
1 |
2 |
3 |
13 |
46501 |
2515 |
2364 |
329 |
https://usegalaxy.org/published/workflow?id=6f836f4b71d399e7, https://usegalaxy.org/published/workflow?id=baf01109a1bf8d0d, https://usegalaxy.org/published/workflow?id=e3c1736cca484dda |
|
|
best_regression_subsets |
BestSubsetsRegression1 |
Perform Best-subsets Regression |
2014-04-01 |
|
1.0.0 |
numpy |
|
To update |
Sequence Analysis, Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/best_regression_subsets |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/best_regression_subsets |
|
|
|
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
3 |
5 |
3 |
5 |
9 |
74 |
16 |
255 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
260 |
19 |
79 |
12 |
|
|
|
bg_statistical_hypothesis_testing |
bg_statistical_hypothesis_testing |
Tool for computing statistical tests. |
2015-02-28 |
https://github.com/bgruening/galaxytools/tree/master/tools/statistics |
0.3 |
numpy |
|
To update |
Statistics |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/statistics |
https://github.com/bgruening/galaxytools/tree/master/tools/statistics |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
47 |
65 |
183 |
364 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
365 |
184 |
66 |
48 |
|
|
|
bia_download |
bia_download |
Tool to query ftp links for study from bioimage archive |
2023-12-06 |
https://www.ebi.ac.uk/biostudies/bioimages/studies |
0.2.0 |
wget |
|
To update |
Imaging |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools |
https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/bia-ftplinks |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 |
7 |
13 |
13 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
13 |
7 |
7 |
|
|
|
bigwig_to_bedgraph |
bigwig_to_bedgraph |
Convert from bigWig to bedGraph format |
2015-06-04 |
|
0.1.0 |
ucsc_tools |
|
To update |
Convert Formats |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/bigwig_to_bedgraph |
https://github.com/bgruening/galaxytools/tree/master/tools/bigwig_to_bedgraph |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
641 |
753 |
6696 |
7952 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
3 |
0 |
0 |
0 |
0 |
7955 |
6696 |
754 |
641 |
|
|
|
bioimage_inference |
bioimage_inference |
Load model from BioImage.IO and make inferences |
2024-08-02 |
https://github.com/bgruening/galaxytools |
2.4.1 |
python |
|
To update |
Imaging |
|
|
Machine learning, Computer science |
Machine learning |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/bioimaging |
https://github.com/bgruening/galaxytools/tree/master/tools/bioimaging |
pytorch |
PyTorch |
PyTorch is an optimized tensor library for deep learning using GPUs and CPUs. |
pytorch |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
4 |
4 |
59 |
59 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
59 |
59 |
4 |
4 |
https://workflowhub.eu/workflows/1526?version=1 |
imaging/process-image-bioimageio |
|
biomodels |
biomodels_biomd0000001066, biomodels_biomd0000001076 |
Wrappers for tools to bring BioModels AI models into Galaxy. |
2023-11-07 |
https://www.ebi.ac.uk/biomodels/ |
1.1 |
|
|
To update |
Machine Learning |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools |
https://github.com/bgruening/galaxytools/tree/master/tools/biomodelsML |
|
|
|
|
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
14 |
14 |
112 |
112 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
113 |
113 |
15 |
15 |
|
|
|
bionano |
bionano_scaffold |
Bionano Solve is a set of tools for analyzing Bionano data |
2021-05-17 |
https://bionanogenomics.com/ |
3.7.0 |
|
|
To update |
Assembly |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/bionano |
https://github.com/bgruening/galaxytools/tree/master/tools/bionano |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
156 |
156 |
556 |
556 |
52 |
52 |
157 |
157 |
22 |
22 |
722 |
722 |
0 |
0 |
0 |
0 |
1435 |
1435 |
230 |
230 |
https://dev.workflowhub.eu/workflows/1002?version=1, https://dev.workflowhub.eu/workflows/1187?version=2, https://usegalaxy.eu/published/workflow?id=075c4126e66def01, https://usegalaxy.eu/published/workflow?id=2e6ed783bdf05d16, https://usegalaxy.eu/published/workflow?id=319bc351f7a8e358, https://usegalaxy.eu/published/workflow?id=3d047ed984762ce8, https://usegalaxy.eu/published/workflow?id=45c0933b5c522628, https://usegalaxy.eu/published/workflow?id=5bb7691b176d1010, https://usegalaxy.eu/published/workflow?id=bb13f30a5562d30d, https://usegalaxy.eu/published/workflow?id=f6bd10486a0ba17d, https://usegalaxy.org.au/published/workflow?id=02f2a556e77eed14, https://usegalaxy.org.au/published/workflow?id=11f1564f2bd815d8, https://usegalaxy.org.au/published/workflow?id=434127690544d0e9, https://usegalaxy.org.au/published/workflow?id=53cbacc71790c41b, https://usegalaxy.org.au/published/workflow?id=73565f6cb4136370, https://usegalaxy.org.au/published/workflow?id=87bbf9408b3f2a32, https://usegalaxy.org.au/published/workflow?id=bcb0be4f4a0e369f, https://usegalaxy.org/published/workflow?id=85f521f5c7351406, https://usegalaxy.org/published/workflow?id=b1cfa3c239ef2523, https://usegalaxy.org/published/workflow?id=bff8bc8d0059274f, https://usegalaxy.org/published/workflow?id=ca3f2d9554e9e1c8, https://usegalaxy.org/published/workflow?id=d5183b025d0e78dd, https://workflowhub.eu/workflows/1607?version=1, https://workflowhub.eu/workflows/643?version=5 |
assembly/vgp_genome_assembly |
|
bismark |
bismark_pretty_report, bismark_bowtie2, bismark_deduplicate, bismark_methylation_extractor |
A tool to map bisulfite converted sequence reads and determine cytosine methylation states |
2015-02-28 |
https://www.bioinformatics.babraham.ac.uk/projects/bismark/ |
0.22.1 |
bismark |
0.25.1 |
To update |
Sequence Analysis, Next Gen Mappers |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/bismark |
https://github.com/bgruening/galaxytools/tree/master/tools/bismark |
|
|
|
|
0 |
4 |
4 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
4 |
0 |
371 |
462 |
14830 |
16831 |
0 |
0 |
0 |
0 |
13 |
13 |
729 |
729 |
6 |
6 |
66 |
66 |
17626 |
15625 |
481 |
390 |
https://usegalaxy.eu/published/workflow?id=6a5c39c1d38a10c2, https://usegalaxy.eu/published/workflow?id=8601a62dbca3082f |
|
|
black_forest_labs_flux |
black_forest_labs_flux |
Using the black forest labs FLUX.1 models to generate image based on user input. |
2024-10-14 |
https://github.com/bgruening/galaxytools/tree/master/tools/flux |
2024 |
|
|
To update |
Machine Learning |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/flux |
https://github.com/bgruening/galaxytools/tree/master/tools/flux |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
31 |
31 |
99 |
99 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
99 |
99 |
31 |
31 |
|
|
|
blat_coverage_report |
generate_coverage_report |
Polymorphism of the Reads |
2014-05-19 |
|
1.0.0 |
|
|
To update |
Next Gen Mappers, Sequence Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/blat_coverage_report |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/blat_coverage_report |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
blat_mapping |
blat2wig |
Coverage of the Reads in wiggle format |
2014-05-19 |
|
1.0.0 |
|
|
To update |
Next Gen Mappers, Sequence Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/blat_mapping |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/blat_mapping |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
blobtoolkit |
blobtoolkit |
Identification and isolation non-target data in draft and publicly available genome assemblies. |
2022-11-04 |
https://blobtoolkit.genomehubs.org/ |
4.0.7 |
|
|
To update |
Sequence Analysis, Assembly |
Genome assembly, Scaffolding, Visualisation, Data deposition, Data parsing |
Genome assembly, Scaffolding, Visualisation |
Sequence assembly, Model organisms, Workflows, Phylogenomics, Zoology, Biodiversity |
Sequence assembly, Model organisms, Workflows, Phylogenomics, Zoology, Biodiversity |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit |
https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit |
BlobToolKit |
BlobToolKit |
BlobToolKit Viewer is a genome-scale dataset visualistion tool developed as part of the blobtoolkit project to allow browser-based identification and filtering of target and non-target data in genome assemblies. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
107 |
107 |
2014 |
2014 |
18 |
18 |
69 |
69 |
38 |
38 |
580 |
580 |
0 |
0 |
0 |
0 |
2663 |
2663 |
163 |
163 |
https://dev.workflowhub.eu/workflows/1127?version=3, https://usegalaxy.eu/published/workflow?id=3069c17b52decab4, https://usegalaxy.eu/published/workflow?id=88f80a31e3ff8663, https://usegalaxy.eu/published/workflow?id=bc32937d505135ab, https://usegalaxy.eu/published/workflow?id=c9a8fba4c56f5c83, https://usegalaxy.org.au/published/workflow?id=0a3fb089674de144, https://workflowhub.eu/workflows/1103?version=3, https://workflowhub.eu/workflows/1104?version=2, https://workflowhub.eu/workflows/1641?version=1 |
assembly/ERGA-post-assembly-QC |
|
blockbuster |
blockbuster |
Blockbuster detects blocks of overlapping reads using a gaussian-distribution approach. |
2015-02-28 |
http://hoffmann.bioinf.uni-leipzig.de/LIFE/blockbuster.html |
0.1.2 |
blockbuster |
0.0.1.1 |
To update |
RNA, Sequence Analysis |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/blockbuster |
https://github.com/bgruening/galaxytools/tree/master/tools/blockbuster |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
98 |
123 |
744 |
3051 |
14 |
14 |
19 |
19 |
9 |
9 |
314 |
314 |
0 |
0 |
0 |
0 |
3384 |
1077 |
146 |
121 |
https://dev.workflowhub.eu/workflows/1333?version=1, https://usegalaxy.eu/published/workflow?id=2e1feecca56bb0b8, https://usegalaxy.eu/published/workflow?id=4f40ae432d8a4259, https://usegalaxy.eu/published/workflow?id=5ec0d6d108e02e1a, https://usegalaxy.eu/published/workflow?id=667d05ae290d11ea, https://usegalaxy.eu/published/workflow?id=7d343d982f1105bf, https://usegalaxy.eu/published/workflow?id=b36be9100485e6cd, https://usegalaxy.eu/published/workflow?id=c7026cd5578c8678, https://usegalaxy.eu/published/workflow?id=f00b862b06093636, https://usegalaxy.org.au/published/workflow?id=4a7f22081ecde089, https://workflowhub.eu/workflows/1671?version=1 |
transcriptomics/small_ncrna_clustering |
|
blockclust |
blockclust |
BlockClust detects transcripts with similar processing patterns. |
2015-02-28 |
https://github.com/bgruening/galaxytools/tree/master/workflows/blockclust |
1.1.1 |
blockclust |
1.1.1 |
Up-to-date |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/blockclust |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/blockclust |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
53 |
83 |
793 |
1572 |
34 |
34 |
79 |
79 |
15 |
15 |
637 |
637 |
0 |
0 |
0 |
0 |
2288 |
1509 |
132 |
102 |
https://dev.workflowhub.eu/workflows/1333?version=1, https://usegalaxy.eu/published/workflow?id=2e1feecca56bb0b8, https://usegalaxy.eu/published/workflow?id=5ec0d6d108e02e1a, https://usegalaxy.eu/published/workflow?id=667d05ae290d11ea, https://usegalaxy.eu/published/workflow?id=7d343d982f1105bf, https://usegalaxy.eu/published/workflow?id=c7026cd5578c8678, https://usegalaxy.eu/published/workflow?id=f00b862b06093636, https://usegalaxy.org.au/published/workflow?id=4a7f22081ecde089, https://workflowhub.eu/workflows/1671?version=1 |
transcriptomics/small_ncrna_clustering |
|
bowtie_wrappers |
bowtie_wrapper |
Galaxy wrappers for the Bowtie short read mapping tools. |
2012-11-26 |
http://bowtie-bio.sourceforge.net/ |
1.2.0 |
bowtie |
1.3.1 |
To update |
Next Gen Mappers |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/bowtie_wrappers |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/bowtie_wrappers |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1338 |
1569 |
25579 |
26908 |
531 |
17497 |
10209 |
203807 |
328 |
388 |
17416 |
17754 |
0 |
2 |
0 |
82 |
248551 |
53204 |
19456 |
2197 |
https://dev.workflowhub.eu/workflows/1149?version=2, https://usegalaxy.org.au/published/workflow?id=5cf5334877cc1297, https://usegalaxy.org.au/published/workflow?id=94c7fdcbbc7b428a, https://usegalaxy.org.au/published/workflow?id=dccc8fb49d61ac33, https://usegalaxy.org/published/workflow?id=07739fbbd53755f6, https://usegalaxy.org/published/workflow?id=0b3af7e9ac69a6b7, https://usegalaxy.org/published/workflow?id=11dac9cba49be089, https://usegalaxy.org/published/workflow?id=14f62361a15f8a24, https://usegalaxy.org/published/workflow?id=1b385fd45ee48614, https://usegalaxy.org/published/workflow?id=246da6fd63cbd49d, https://usegalaxy.org/published/workflow?id=29a80db9f3208c29, https://usegalaxy.org/published/workflow?id=31dea5361ec9421c, https://usegalaxy.org/published/workflow?id=344a79d4f12d2cff, https://usegalaxy.org/published/workflow?id=3d1f4bd67ce30f99, https://usegalaxy.org/published/workflow?id=4266aa248d5b1ea4, https://usegalaxy.org/published/workflow?id=486ee20613d58dcf, https://usegalaxy.org/published/workflow?id=48adcc44fe62a99c, https://usegalaxy.org/published/workflow?id=4a9b0534b1c88609, https://usegalaxy.org/published/workflow?id=4aad96570d252f95, https://usegalaxy.org/published/workflow?id=5004f1087f5e87db, https://usegalaxy.org/published/workflow?id=5aa2caa2dcae1477, https://usegalaxy.org/published/workflow?id=62401f33a369bac0, https://usegalaxy.org/published/workflow?id=81183f40d2f3e395, https://usegalaxy.org/published/workflow?id=85c3a1fc1d3d3df8, https://usegalaxy.org/published/workflow?id=92a233e5f2405830, https://usegalaxy.org/published/workflow?id=a24092b7f00b4e2a, https://usegalaxy.org/published/workflow?id=a57db139837dd24c, https://usegalaxy.org/published/workflow?id=ab23c641cfdefe0c, https://usegalaxy.org/published/workflow?id=b0a12221ce09c001, https://usegalaxy.org/published/workflow?id=b2176abeb937f026, https://usegalaxy.org/published/workflow?id=b5c79535c499bc58, https://usegalaxy.org/published/workflow?id=bb9ee8e05f7042a9, https://usegalaxy.org/published/workflow?id=d2864aa3631b3bf6, https://usegalaxy.org/published/workflow?id=dcb73fce390b36b2, https://usegalaxy.org/published/workflow?id=eb20150175a6ab03, https://usegalaxy.org/published/workflow?id=f201ce61becf9a80, https://usegalaxy.org/published/workflow?id=f823b87dd06ba4ac, https://usegalaxy.org/published/workflow?id=fc09d17e0bce18f8, https://workflowhub.eu/workflows/1530?version=1 |
genome-annotation/tnseq |
|
canonical_correlation_analysis |
cca1 |
Canonical Correlation Analysis |
2014-05-19 |
|
1.0.0 |
R |
|
To update |
Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/canonical_correlation_analysis |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/canonical_correlation_analysis |
|
|
|
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
17 |
19 |
58 |
77 |
26 |
147 |
113 |
505 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
582 |
171 |
166 |
43 |
|
|
|
canu |
canu |
Canu is a hierarchical assembly pipeline designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequel or Oxford Nanopore MinION). |
2018-06-07 |
https://github.com/marbl/canu |
2.3 |
canu |
2.3 |
Up-to-date |
Assembly |
De-novo assembly |
De-novo assembly |
Genomics |
Genomics |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/canu |
https://github.com/bgruening/galaxytools/tree/master/tools/canu |
canu |
CANU |
De-novo assembly tool for long read chemistry like Nanopore data and PacBio data. |
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
1517 |
1626 |
13461 |
15728 |
0 |
0 |
0 |
0 |
414 |
424 |
3666 |
3839 |
29 |
29 |
337 |
337 |
19904 |
17464 |
2079 |
1960 |
|
|
|
categorize_elements_satisfying_criteria |
categorize_elements_satisfying_criteria |
Categorize Elements satisfying criteria. |
2013-09-25 |
|
1.0.0 |
|
|
To update |
Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/categorize_elements_satisfying_criteria |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/categorize_elements_satisfying_criteria |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
4 |
5 |
28 |
41 |
0 |
0 |
0 |
0 |
13 |
15 |
172 |
208 |
0 |
0 |
0 |
0 |
249 |
200 |
20 |
17 |
|
|
|
ccat |
peakcalling_ccat |
Control-based ChIP-seq Analysis Tool |
2014-01-27 |
|
0.0.2 |
ccat |
3.0 |
To update |
ChIP-seq |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/ccat |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/ccat |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
27 |
42 |
76 |
179 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
179 |
76 |
42 |
27 |
|
|
|
cd_hit_dup |
cd_hit_dup |
simple tool for removing duplicates from sequencing reads |
2015-04-28 |
|
0.0.1 |
cd-hit-auxtools |
4.8.1 |
To update |
Metagenomics, Sequence Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/cd_hit_dup |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/cd_hit_dup |
|
|
|
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
456 |
691 |
6201 |
7789 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7789 |
6201 |
691 |
456 |
https://usegalaxy.org/published/workflow?id=35c2626849348f2c |
|
|
cellpose |
cellpose |
Cellpose is an anatomical segmentation algorithm |
2024-02-29 |
https://github.com/MouseLand/cellpose |
3.1.0 |
|
|
To update |
Imaging |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/cellpose |
https://github.com/bgruening/galaxytools/tree/master/tools/cellpose |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
5 |
22 |
22 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
22 |
22 |
5 |
5 |
|
|
|
cellprofiler |
cp_cellprofiler, cp_color_to_gray, cp_convert_objects_to_image, cp_display_data_on_image, cp_enhance_or_suppress_features, cp_export_to_spreadsheet, cp_gray_to_color, cp_identify_primary_objects, cp_image_math, cp_mask_image, cp_measure_granularity, cp_measure_image_area_occupied, cp_measure_image_intensity, cp_measure_image_quality, cp_measure_object_intensity, cp_measure_object_size_shape, cp_measure_texture, cp_overlay_outlines, cp_relate_objects, cp_save_images, cp_common, cp_tile, cp_track_objects |
cellProfiler wrapper |
2020-03-06 |
|
|
|
|
To update |
Imaging |
Quantification, Image analysis, Parsing |
Quantification, Image analysis, Parsing |
Imaging, Microarray experiment, Genotype and phenotype |
Imaging, Microarray experiment, Genotype and phenotype |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools |
https://github.com/bgruening/galaxytools/tree/master/tools/cellprofiler |
CellProfiler |
CellProfiler |
Tool for quantifying data from biological images, particularly in high-throughput experiments. |
cellprofiler |
0 |
23 |
23 |
19 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
19 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
19 |
23 |
19 |
0 |
64 |
64 |
4932 |
4932 |
0 |
0 |
0 |
0 |
9 |
9 |
6930 |
6930 |
0 |
0 |
0 |
0 |
11862 |
11862 |
73 |
73 |
https://dev.workflowhub.eu/workflows/1254?version=2, https://dev.workflowhub.eu/workflows/1262?version=2, https://usegalaxy.eu/published/workflow?id=3dbee72d7c550b0c, https://workflowhub.eu/workflows/115?version=1, https://workflowhub.eu/workflows/1503?version=1, https://workflowhub.eu/workflows/1505?version=1, https://workflowhub.eu/workflows/41?version=2 |
imaging/object-tracking-using-cell-profiler, imaging/tutorial-CP |
|
cellprofiler4 |
cp_cellprofiler4 |
cellProfiler4 wrapper |
2021-09-15 |
https://github.com/CellProfiler/CellProfiler |
4.2.8 |
|
|
To update |
Imaging |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools |
https://github.com/bgruening/galaxytools/tree/master/tools/cellprofiler_v4 |
|
|
|
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
11 |
11 |
55 |
55 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
55 |
55 |
11 |
11 |
|
|
|
change_case |
ChangeCase |
Convert column case. |
2012-12-04 |
|
1.0.1 |
perl |
|
To update |
Text Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/change_case |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/change_case |
|
|
|
|
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
1 |
1 |
0 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
2386 |
2846 |
11597 |
13931 |
1975 |
2661 |
9987 |
18262 |
255 |
262 |
982 |
1001 |
90 |
91 |
632 |
652 |
33846 |
23198 |
5860 |
4706 |
https://dev.workflowhub.eu/workflows/1326?version=3, https://dev.workflowhub.eu/workflows/1345?version=1, https://dev.workflowhub.eu/workflows/606?version=1, https://dev.workflowhub.eu/workflows/759?version=1, https://usegalaxy.eu/published/workflow?id=9c7a218993788493, https://usegalaxy.org.au/published/workflow?id=2cef9a1633e0a067, https://usegalaxy.org.au/published/workflow?id=5490661d0153962b, https://usegalaxy.org.au/published/workflow?id=71bad95f72c9f30d, https://usegalaxy.org.au/published/workflow?id=75113a1b41904d2a, https://usegalaxy.org.au/published/workflow?id=e1fd89e7248b6661, https://usegalaxy.org/published/workflow?id=e75a7802d2941f31, https://workflowhub.eu/workflows/1713?version=1 |
transcriptomics/ref-based |
|
chatgpt_openai_api |
chatgpt_openai_api |
Using the OpenAI GPT models to generate text based on user input. |
2024-08-12 |
https://github.com/bgruening/galaxytools/tree/master/tools/chatgpt |
2024 |
python |
|
To update |
Machine Learning |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/chatgpt |
https://github.com/bgruening/galaxytools/tree/master/tools/chatgpt |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
35 |
35 |
546 |
546 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
546 |
546 |
35 |
35 |
https://usegalaxy.eu/published/workflow?id=a2284469005518e1 |
|
|
chipseeker |
chipseeker |
A tool for ChIP peak annotation and visualization |
2018-05-24 |
https://bioconductor.org/packages/release/bioc/html/ChIPseeker.html |
1.32.0 |
bioconductor-chipseeker |
1.42.0 |
To update |
ChIP-seq, Genome annotation |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/chipseeker |
https://github.com/bgruening/galaxytools/tree/master/tools/chipseeker |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
1049 |
1136 |
19348 |
22173 |
2630 |
2954 |
34564 |
37281 |
111 |
114 |
3489 |
3571 |
0 |
0 |
0 |
0 |
63025 |
57401 |
4204 |
3790 |
https://usegalaxy.eu/published/workflow?id=6bce1d419a179c50, https://usegalaxy.eu/published/workflow?id=7d44ea091d437edf, https://usegalaxy.org/published/workflow?id=7643e66a9b4e9c11 |
|
|
chromosome_diagram |
chromosome_diagram |
Chromosome Diagrams using Biopython |
2013-09-26 |
|
0.0.3 |
biopython |
1.70 |
To update |
Graphics, Sequence Analysis, Visualization |
|
|
|
|
peterjc |
|
https://github.com/peterjc/pico_galaxy/tree/master/tools/chromosome_diagram |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
circexplorer |
circexplorer |
A combined strategy to identify circular RNAs (circRNAs and ciRNAs) |
2016-06-06 |
https://github.com/YangLab/CIRCexplorer |
1.1.9.0 |
circexplorer |
1.1.10 |
To update |
Sequence Analysis, RNA |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/circexplorer |
https://github.com/bgruening/galaxytools/tree/master/tools/circexplorer |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
31 |
42 |
162 |
279 |
0 |
0 |
0 |
0 |
6 |
6 |
247 |
247 |
0 |
0 |
0 |
0 |
526 |
409 |
48 |
37 |
https://usegalaxy.org.au/published/workflow?id=5aff01d0b5fabd84 |
|
|
clc_assembly_cell |
clc_assembler, clc_mapper |
Galaxy wrapper for the CLC Assembly Cell suite from CLCBio |
2013-10-28 |
https://github.com/peterjc/pico_galaxy/tree/master/tools/clc_assembly_cell |
0.0.7 |
samtools |
1.22.1 |
To update |
Assembly, Next Gen Mappers, SAM |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/clc_assembly_cell |
https://github.com/peterjc/pico_galaxy/tree/master/tools/clc_assembly_cell |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
cleanlab |
cleanlab_issue_handler |
CleanLab is a package to find various types of issues in a dataset. |
2025-05-05 |
https://cleanlab.ai |
2.7.1 |
cleanlab |
|
To update |
Machine Learning |
|
|
|
|
bgruening |
https://github.com/cleanlab/cleanlab |
https://github.com/bgruening/galaxytools/tree/master/tools/cleanlab |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
clinod |
clinod |
NoD: a Nucleolar localization sequence detector for eukaryotic and viral proteins |
2013-05-02 |
http://www.compbio.dundee.ac.uk/www-nod/ |
0.1.0 |
clinod |
1.3 |
To update |
Sequence Analysis |
Nucleic acid sequence analysis |
Nucleic acid sequence analysis |
Sequence analysis |
Sequence analysis |
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/clinod |
https://github.com/peterjc/pico_galaxy/tree/master/tools/clinod |
clinod |
clinod |
The command line NoD predictor (clinod) can be run from the command line to predict Nucleolar localization sequences (NoLSs) that are short targeting sequences responsible for the localization of proteins to the nucleolus.The predictor accepts a list of FASTA formatted sequences as an input and outputs the NOLS predictions as a result.Please note that currently, JPred secondary structure predictions are not supported by clinod. However, we are working on it. |
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
23 |
23 |
559 |
559 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
559 |
559 |
23 |
23 |
|
|
|
cluster |
gops_cluster_1 |
Cluster the intervals of a dataset |
2014-04-01 |
https://github.com/galaxyproject/gops |
1.0.0 |
bx-python |
0.14.0 |
To update |
Genomic Interval Operations |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/cluster |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/gops/cluster |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
16 |
37 |
497 |
864 |
145 |
1552 |
1957 |
30668 |
17 |
20 |
1358 |
1449 |
1 |
2 |
1 |
11 |
32992 |
3813 |
1611 |
179 |
https://usegalaxy.eu/published/workflow?id=7d44ea091d437edf, https://usegalaxy.org/published/workflow?id=6f836f4b71d399e7, https://usegalaxy.org/published/workflow?id=7cff5c4dadffaad5 |
|
|
cmsearch_deoverlap |
cmsearch_deoverlap |
removes lower scoring overlaps from cmsearch results. |
2023-08-19 |
https://github.com/EBI-Metagenomics/pipeline-v5/blob/master/tools/RNA_prediction/cmsearch-deoverlap/cmsearch-deoverlap.pl |
0.08+galaxy2 |
perl |
|
To update |
RNA |
Comparison, Alignment |
Comparison, Alignment |
Biology, Medicine |
Biology, Medicine |
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap |
cmsearch-deoverlap |
cmsearch-deoverlap |
Removes lower scoring overlaps from cmsearch results.This tool removes lower-scoring overlaps from cmsearch results. Given information about the clans and the cmsearch tbl output this tool returns a filtered cmsearch tbl output. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
3 |
3 |
2982 |
2982 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2982 |
2982 |
3 |
3 |
https://usegalaxy.eu/published/workflow?id=437704898229dfb6, https://workflowhub.eu/workflows/1270?version=2 |
|
|
cmv |
cmcv, cmv, hmmcv, hmmv |
cmv is a collection of tools for the visualisation of Hidden Markov Models and RNA-family models. |
2017-09-22 |
https://github.com/eggzilla/cmv |
1.0.8 |
cmv |
1.0.8 |
Up-to-date |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmv |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmv |
|
|
|
|
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
0 |
10 |
14 |
70 |
114 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
114 |
70 |
14 |
10 |
https://usegalaxy.eu/published/workflow?id=5cd167ed9e159e73, https://usegalaxy.eu/published/workflow?id=8f2d958cee428ca1 |
|
|
cofold |
cofold |
Cofold predicts RNA secondary structures that takes co-transcriptional folding into account. |
2015-02-28 |
http://www.e-rna.org/cofold/ |
2.0.4.0 |
cofold |
2.0.4 |
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cofold |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cofold |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
25 |
31 |
257 |
361 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
361 |
257 |
31 |
25 |
|
|
|
column_arrange_by_header |
bg_column_arrange_by_header |
Column arrange by header name |
2015-03-02 |
|
0.2 |
|
|
To update |
Text Manipulation |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/column_arrange_by_header |
https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/column_arrange_by_header |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
452 |
506 |
7117 |
7491 |
444 |
444 |
2235 |
2235 |
111 |
142 |
1582 |
1820 |
27 |
27 |
193 |
193 |
11739 |
11127 |
1119 |
1034 |
https://dev.workflowhub.eu/workflows/1081?version=1, https://usegalaxy.eu/published/workflow?id=0f7acf235096b708, https://usegalaxy.eu/published/workflow?id=152223c8aed27357, https://usegalaxy.eu/published/workflow?id=1da86d74f8535f4e, https://usegalaxy.eu/published/workflow?id=220961d803697f54, https://usegalaxy.eu/published/workflow?id=2424282f793f0f1b, https://usegalaxy.eu/published/workflow?id=466bdd8ba7b67264, https://usegalaxy.eu/published/workflow?id=4f62794453f65cba, https://usegalaxy.eu/published/workflow?id=5ed38d8114bcd6f7, https://usegalaxy.eu/published/workflow?id=6ed1016dfdf9f928, https://usegalaxy.eu/published/workflow?id=83049910e2cd5128, https://usegalaxy.eu/published/workflow?id=8f677efac7100097, https://usegalaxy.eu/published/workflow?id=930a9757252d3ca6, https://usegalaxy.eu/published/workflow?id=9a0275211e74698a, https://usegalaxy.eu/published/workflow?id=ce1712139b4a4273, https://usegalaxy.eu/published/workflow?id=ff2fd4a4bb27d859, https://usegalaxy.org.au/published/workflow?id=20d472fc5563a640, https://usegalaxy.org.au/published/workflow?id=4f837b7f90d5ebac, https://workflowhub.eu/workflows/1678?version=1, https://workflowhub.eu/workflows/607?version=1, https://workflowhub.eu/workflows/629?version=1 |
single-cell/bulk-deconvolution-evaluate, variant-analysis/somatic-variants |
|
combine_metaphlan2_humann2 |
combine_metaphlan_humann |
Combine MetaPhlAn2 and HUMAnN2 outputs to relate genus/species abundances and gene families/pathways abundances |
2023-07-20 |
|
0.3.0 |
python |
|
To update |
Metagenomics |
Aggregation |
Aggregation |
Metagenomics, Molecular interactions, pathways and networks |
Metagenomics, Molecular interactions, pathways and networks |
bebatut |
https://github.com/bgruening/galaxytools/tree/master/tools/combine_metaphlan2_humann2 |
https://github.com/bgruening/galaxytools/tree/master/tools/combine_metaphlan_humann |
combine_metaphlan_and_humann |
Combine Metaphlan and HUMAnN |
This tool combine MetaPhlAn outputs and HUMANnN outputs |
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
80 |
80 |
614 |
614 |
18 |
18 |
29 |
29 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
643 |
643 |
98 |
98 |
https://usegalaxy.eu/published/workflow?id=9472be79da012999, https://usegalaxy.fr/published/workflow?id=c4f6062e51d0f45e, https://workflowhub.eu/workflows/1466?version=2 |
microbiome/metatranscriptomics |
|
compalignp |
compalignp |
Compute fractional identity between trusted alignment and test alignment |
2015-06-03 |
|
1.0 |
compalignp |
1.0 |
Up-to-date |
RNA, Sequence Analysis |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/compalignp/ |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/compalignp |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
5 |
29 |
29 |
222 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
222 |
29 |
29 |
5 |
|
|
|
compare_humann2_output |
compare_humann2_output |
Compare outputs of HUMAnN2 for several samples and extract similar and specific information |
2022-10-19 |
|
0.2.0 |
|
|
To update |
Metagenomics |
Comparison |
Comparison |
Metagenomics, Gene and protein families |
Metagenomics, Gene and protein families |
bebatut |
https://github.com/bgruening/galaxytools/tree/master/tools/compare_humann2_output |
https://github.com/bgruening/galaxytools/tree/master/tools/compare_humann2_output |
compare_humann2_outputs |
Compare HUMAnN2 outputs |
This tool compare HUMANnN2 outputs with gene families or pathways and their relative abundances between several samples |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
27 |
32 |
285 |
332 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
332 |
285 |
32 |
27 |
|
|
|
complement |
gops_complement_1 |
Complement intervals of a dataset |
2014-04-01 |
https://github.com/galaxyproject/gops |
1.0.0 |
bx-python |
0.14.0 |
To update |
Genomic Interval Operations |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/complement |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/gops/complement |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
11 |
20 |
133 |
233 |
160 |
838 |
438 |
4818 |
8 |
8 |
381 |
485 |
0 |
0 |
0 |
0 |
5536 |
952 |
866 |
179 |
|
|
|
compute_motif_frequencies_for_all_motifs |
compute_motif_frequencies_for_all_motifs |
Compute Motif Frequencies For All Motifs, motif by motif. |
2013-09-25 |
|
1.0.0 |
|
|
To update |
Sequence Analysis, Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/compute_motif_frequencies_for_all_motifs |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/compute_motif_frequencies_for_all_motifs |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
10 |
12 |
70 |
98 |
0 |
0 |
0 |
0 |
8 |
8 |
328 |
376 |
0 |
0 |
0 |
0 |
474 |
398 |
20 |
18 |
|
|
|
compute_motifs_frequency |
compute_motifs_frequency |
Compute Motif Frequencies in indel flanking regions. |
2013-09-25 |
|
1.0.0 |
|
|
To update |
Sequence Analysis, Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/compute_motifs_frequency |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/compute_motifs_frequency |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1 |
2 |
40 |
65 |
0 |
0 |
0 |
0 |
5 |
5 |
327 |
377 |
0 |
0 |
0 |
0 |
442 |
367 |
7 |
6 |
|
|
|
compute_q_values |
compute_q_values |
Compute q-values based on multiple simultaneous tests p-values |
2014-04-01 |
|
1.0.1 |
R |
|
To update |
Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/compute_q_values |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/compute_q_values |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
35 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
35 |
0 |
3 |
0 |
|
|
|
concat |
gops_concat_1 |
Concatenate two bed files |
2014-04-01 |
https://github.com/galaxyproject/gops |
1.0.1 |
bx-python |
0.14.0 |
To update |
Genomic Interval Operations |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/concat |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/gops/concat |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
688 |
815 |
576916 |
577315 |
652 |
3572 |
43601 |
85947 |
106 |
120 |
19341 |
19463 |
28 |
29 |
1224 |
1234 |
683959 |
641082 |
4536 |
1474 |
https://dev.workflowhub.eu/workflows/1440?version=1, https://dev.workflowhub.eu/workflows/1441?version=1, https://dev.workflowhub.eu/workflows/194?version=2, https://usegalaxy.eu/published/workflow?id=06544e74f583fd05, https://usegalaxy.eu/published/workflow?id=3aaea772745ca295, https://usegalaxy.eu/published/workflow?id=437704898229dfb6, https://usegalaxy.eu/published/workflow?id=522500fac247be6f, https://usegalaxy.eu/published/workflow?id=5ded4002e684a02c, https://usegalaxy.eu/published/workflow?id=6c91fe92ef069d64, https://usegalaxy.eu/published/workflow?id=7b7d6a5c6c65d74b, https://usegalaxy.eu/published/workflow?id=7d44ea091d437edf, https://usegalaxy.eu/published/workflow?id=b8fc492025ad6ff0, https://usegalaxy.eu/published/workflow?id=c832ecfa83bcda14, https://usegalaxy.eu/published/workflow?id=d52ff93f4ffdd981, https://usegalaxy.fr/published/workflow?id=0df61a88d64de252, https://usegalaxy.fr/published/workflow?id=a3e9062133fdf7c2, https://usegalaxy.fr/published/workflow?id=bf8ffe72b7ce4570, https://usegalaxy.org.au/published/workflow?id=2955ea7be1cdda29, https://usegalaxy.org.au/published/workflow?id=2b71eb1dc2aa28a1, https://usegalaxy.org.au/published/workflow?id=4b681937a01df465, https://usegalaxy.org.au/published/workflow?id=5cd7f1824db7a960, https://usegalaxy.org.au/published/workflow?id=61a21c9928182ae4, https://usegalaxy.org.au/published/workflow?id=6795e545b0cafded, https://usegalaxy.org.au/published/workflow?id=851552cc3e830253, https://usegalaxy.org.au/published/workflow?id=a77ce877e786d44a, https://usegalaxy.org.au/published/workflow?id=daff6854b5dfc6f1, https://usegalaxy.org.au/published/workflow?id=e154a9b605ea0886, https://usegalaxy.org.au/published/workflow?id=ebd1ee73906fdea0, https://usegalaxy.org.au/published/workflow?id=f65b54fcffaa11e5, https://usegalaxy.org/published/workflow?id=0392de36b6f55a8f, https://usegalaxy.org/published/workflow?id=27e1a8c651d9a298, https://usegalaxy.org/published/workflow?id=31cc891be77cbc6f, https://usegalaxy.org/published/workflow?id=4ffdb2cf21759d26, https://usegalaxy.org/published/workflow?id=507c817755b2410d, https://usegalaxy.org/published/workflow?id=5834e562fa403732, https://usegalaxy.org/published/workflow?id=65f3a5772ae05a7a, https://usegalaxy.org/published/workflow?id=6ba03802169c0063, https://usegalaxy.org/published/workflow?id=7b20a62d69d53efc, https://usegalaxy.org/published/workflow?id=d136d24e4c96962a, https://usegalaxy.org/published/workflow?id=f25a3da4b00eddbb, https://workflowhub.eu/workflows/1270?version=2, https://workflowhub.eu/workflows/138?version=9, https://workflowhub.eu/workflows/356?version=1 |
|
|
condense_characters |
Condense characters1 |
Condense consecutive characters. |
2012-12-04 |
|
1.0.0 |
|
|
To update |
Text Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/condense_characters |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/condense_characters |
|
|
|
|
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
24 |
371 |
39 |
2177 |
8 |
9 |
199 |
226 |
0 |
1 |
0 |
10 |
2413 |
238 |
381 |
32 |
|
|
|
convert_characters |
Convert characters1 |
Convert delimiters to tab. |
2012-12-04 |
|
1.0.1 |
python |
|
To update |
Text Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/convert_characters |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/convert_characters |
|
|
|
|
1 |
1 |
1 |
1 |
1 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
1 |
1 |
0 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
1117 |
1307 |
28630 |
34674 |
2285 |
8875 |
21394 |
162126 |
256 |
344 |
5315 |
6614 |
131 |
132 |
1374 |
1462 |
204876 |
56713 |
10658 |
3789 |
https://dev.workflowhub.eu/workflows/1002?version=1, https://dev.workflowhub.eu/workflows/1187?version=2, https://dev.workflowhub.eu/workflows/1250?version=2, https://usegalaxy.eu/published/workflow?id=002a51bdef00e14d, https://usegalaxy.eu/published/workflow?id=01fe4c590e608103, https://usegalaxy.eu/published/workflow?id=023a0ee62dd1f593, https://usegalaxy.eu/published/workflow?id=03be9d62e8e4a129, https://usegalaxy.eu/published/workflow?id=085c3a4c89d137b5, https://usegalaxy.eu/published/workflow?id=089e5e83b1de0511, https://usegalaxy.eu/published/workflow?id=0aee7ffa5f6384bd, https://usegalaxy.eu/published/workflow?id=1151052f4393852a, https://usegalaxy.eu/published/workflow?id=1483534f49b826bf, https://usegalaxy.eu/published/workflow?id=194a05d42687b524, https://usegalaxy.eu/published/workflow?id=19bb57f8cfa48bb9, https://usegalaxy.eu/published/workflow?id=1ac0a15758277730, https://usegalaxy.eu/published/workflow?id=1bb084f1bc102734, https://usegalaxy.eu/published/workflow?id=1da7ac8eaf891f39, https://usegalaxy.eu/published/workflow?id=1e02a7292e9974b1, https://usegalaxy.eu/published/workflow?id=1f2a1438e41188f2, https://usegalaxy.eu/published/workflow?id=20ada53472782c9b, https://usegalaxy.eu/published/workflow?id=21a3f72851f29925, https://usegalaxy.eu/published/workflow?id=220961d803697f54, https://usegalaxy.eu/published/workflow?id=2671a5f85b2cccfe, https://usegalaxy.eu/published/workflow?id=270b6f82efab28b2, https://usegalaxy.eu/published/workflow?id=2c3d05023c02113e, https://usegalaxy.eu/published/workflow?id=2e418c5810012e5a, https://usegalaxy.eu/published/workflow?id=342a5df69951e3d7, https://usegalaxy.eu/published/workflow?id=379642036b6f5a66, https://usegalaxy.eu/published/workflow?id=3a3e2d50fe7a9ee3, https://usegalaxy.eu/published/workflow?id=3e255a5b7026d26e, https://usegalaxy.eu/published/workflow?id=3eb6663a66f8e69a, https://usegalaxy.eu/published/workflow?id=3f5414bb38b47fcf, https://usegalaxy.eu/published/workflow?id=416141b245073406, https://usegalaxy.eu/published/workflow?id=471eb8b4c54f897d, https://usegalaxy.eu/published/workflow?id=475ea16f943cc013, https://usegalaxy.eu/published/workflow?id=4856e3522b2ee059, https://usegalaxy.eu/published/workflow?id=497b82d3b92dc076, https://usegalaxy.eu/published/workflow?id=4bd0827030df02a3, https://usegalaxy.eu/published/workflow?id=4c3a9b574f37eebb, https://usegalaxy.eu/published/workflow?id=4d41ee83fc0040d4, https://usegalaxy.eu/published/workflow?id=5115299e77df8104, https://usegalaxy.eu/published/workflow?id=54590ccd11ffbf65, https://usegalaxy.eu/published/workflow?id=57cc33ed64d71982, https://usegalaxy.eu/published/workflow?id=5ad406442ec21345, https://usegalaxy.eu/published/workflow?id=5e1906290f5b4d8a, https://usegalaxy.eu/published/workflow?id=5ed38d8114bcd6f7, https://usegalaxy.eu/published/workflow?id=6573f3b1606b7f09, https://usegalaxy.eu/published/workflow?id=69cdd404592535ec, https://usegalaxy.eu/published/workflow?id=6ed1016dfdf9f928, https://usegalaxy.eu/published/workflow?id=71a6d128a09210f0, https://usegalaxy.eu/published/workflow?id=7337d15d121596da, https://usegalaxy.eu/published/workflow?id=79b5afb125e3c3da, https://usegalaxy.eu/published/workflow?id=847403b72dd346ff, https://usegalaxy.eu/published/workflow?id=8be366ad6a42408b, https://usegalaxy.eu/published/workflow?id=9155ed0e7a6a7b60, https://usegalaxy.eu/published/workflow?id=92760fc19ef120ce, https://usegalaxy.eu/published/workflow?id=92dafb3d1c06e074, https://usegalaxy.eu/published/workflow?id=95f420d8856bf725, https://usegalaxy.eu/published/workflow?id=9c0b67496dfe52b2, https://usegalaxy.eu/published/workflow?id=9f2d18f0d0896e8b, https://usegalaxy.eu/published/workflow?id=a6dd62ab4b9a0725, https://usegalaxy.eu/published/workflow?id=aa6dc57f5c67fb4b, https://usegalaxy.eu/published/workflow?id=ac6eb99f70d35999, https://usegalaxy.eu/published/workflow?id=ae74f60cd20d56bc, https://usegalaxy.eu/published/workflow?id=af30010868c97316, https://usegalaxy.eu/published/workflow?id=b211fceaecf41c9e, https://usegalaxy.eu/published/workflow?id=b4948afacccfefdb, https://usegalaxy.eu/published/workflow?id=b89cf3cb6a25c999, https://usegalaxy.eu/published/workflow?id=b8baade87e733fce, https://usegalaxy.eu/published/workflow?id=bc87309a8763d0b4, https://usegalaxy.eu/published/workflow?id=bcf99cc0469db276, https://usegalaxy.eu/published/workflow?id=bef0a7d604f2ebef, https://usegalaxy.eu/published/workflow?id=c4c2e669b86cffbc, https://usegalaxy.eu/published/workflow?id=c508c00e81018dd8, https://usegalaxy.eu/published/workflow?id=caba6d3d7db648e9, https://usegalaxy.eu/published/workflow?id=cde27d06b74ad2fd, https://usegalaxy.eu/published/workflow?id=d375fb9af8d46793, https://usegalaxy.eu/published/workflow?id=d67299c34e63f3d9, https://usegalaxy.eu/published/workflow?id=dc27453c438577f6, https://usegalaxy.eu/published/workflow?id=de9cf573314f416c, https://usegalaxy.eu/published/workflow?id=e138640778b7414c, https://usegalaxy.eu/published/workflow?id=e7aebe58411d97ed, https://usegalaxy.eu/published/workflow?id=e8f9e1d911683b22, https://usegalaxy.eu/published/workflow?id=e935d2c8ffb52588, https://usegalaxy.eu/published/workflow?id=ec79f14ab91cd933, https://usegalaxy.eu/published/workflow?id=edea08c943ff9c5e, https://usegalaxy.eu/published/workflow?id=f1ca4289ee4f67bb, https://usegalaxy.eu/published/workflow?id=f38745208494d4ab, https://usegalaxy.eu/published/workflow?id=f578a097b4339025, https://usegalaxy.eu/published/workflow?id=f6a625946dea60fa, https://usegalaxy.eu/published/workflow?id=f7a7c72489d6b3d4, https://usegalaxy.eu/published/workflow?id=fb015e398373ea8a, https://usegalaxy.eu/published/workflow?id=fba1671d835b6dd3, https://usegalaxy.eu/published/workflow?id=fc0b9efa7d2e61e6, https://usegalaxy.eu/published/workflow?id=fc25c1f8c6667c87, https://usegalaxy.eu/published/workflow?id=fd649ac4d4872c81, https://usegalaxy.fr/published/workflow?id=c7be6e229a045fad, https://usegalaxy.org.au/published/workflow?id=02eebe3d909206ab, https://usegalaxy.org.au/published/workflow?id=08fac3b4c128e597, https://usegalaxy.org.au/published/workflow?id=0af0ea50f1237952, https://usegalaxy.org.au/published/workflow?id=0cc8c8875df6bccb, https://usegalaxy.org.au/published/workflow?id=10355b2680374a03, https://usegalaxy.org.au/published/workflow?id=1eb3e1452c672480, https://usegalaxy.org.au/published/workflow?id=2470cb61ba51288c, https://usegalaxy.org.au/published/workflow?id=2d45d7138d8715b4, https://usegalaxy.org.au/published/workflow?id=2df1d32f78974528, https://usegalaxy.org.au/published/workflow?id=319e9d693fac8dce, https://usegalaxy.org.au/published/workflow?id=3604307ec2835628, https://usegalaxy.org.au/published/workflow?id=36f54eda8568355d, https://usegalaxy.org.au/published/workflow?id=371c9892d261cee2, https://usegalaxy.org.au/published/workflow?id=3df7f45b7b388f8c, https://usegalaxy.org.au/published/workflow?id=40666ceb68d101ac, https://usegalaxy.org.au/published/workflow?id=41795303a88d9e94, https://usegalaxy.org.au/published/workflow?id=4267bd1e4cfd1901, https://usegalaxy.org.au/published/workflow?id=434127690544d0e9, https://usegalaxy.org.au/published/workflow?id=51bad198f1fd1215, https://usegalaxy.org.au/published/workflow?id=5550585ffc3d8d0e, https://usegalaxy.org.au/published/workflow?id=5b0c0e34394afed1, https://usegalaxy.org.au/published/workflow?id=5cd804644a34c8fd, https://usegalaxy.org.au/published/workflow?id=5f4f874e49515555, https://usegalaxy.org.au/published/workflow?id=60c0dec52cdca708, https://usegalaxy.org.au/published/workflow?id=63789b6f82172679, https://usegalaxy.org.au/published/workflow?id=68b2961117e62890, https://usegalaxy.org.au/published/workflow?id=6c27019d03dd49d8, https://usegalaxy.org.au/published/workflow?id=6c9129acb9d98afe, https://usegalaxy.org.au/published/workflow?id=8926e592f2e60863, https://usegalaxy.org.au/published/workflow?id=8a6233015db6dd24, https://usegalaxy.org.au/published/workflow?id=8bf8c9929249f37d, https://usegalaxy.org.au/published/workflow?id=8dd86497bc15d981, https://usegalaxy.org.au/published/workflow?id=8e8a5cce9f3f2f67, https://usegalaxy.org.au/published/workflow?id=91ee716be8bfd508, https://usegalaxy.org.au/published/workflow?id=9642aadb83c4f752, https://usegalaxy.org.au/published/workflow?id=970dc0d8bd74707f, https://usegalaxy.org.au/published/workflow?id=9804030358c3f844, https://usegalaxy.org.au/published/workflow?id=98d3def7da131b4c, https://usegalaxy.org.au/published/workflow?id=98f660971010d11d, https://usegalaxy.org.au/published/workflow?id=9e0bae0505ee7c07, https://usegalaxy.org.au/published/workflow?id=a02c102e179596cb, https://usegalaxy.org.au/published/workflow?id=a345bf84eb9bf6b2, https://usegalaxy.org.au/published/workflow?id=a525966251895f8a, https://usegalaxy.org.au/published/workflow?id=ad10cd704268dcf0, https://usegalaxy.org.au/published/workflow?id=afab89bc468da8b3, https://usegalaxy.org.au/published/workflow?id=b19fa49405117317, https://usegalaxy.org.au/published/workflow?id=b1f45d2f8d8343e9, https://usegalaxy.org.au/published/workflow?id=b5131e3a0ef2676e, https://usegalaxy.org.au/published/workflow?id=b9faf6a3f48fc11b, https://usegalaxy.org.au/published/workflow?id=be96bb47b6d6435a, https://usegalaxy.org.au/published/workflow?id=c622bd03677314aa, https://usegalaxy.org.au/published/workflow?id=c6a71573a299eb3a, https://usegalaxy.org.au/published/workflow?id=c7e1f666a3366823, https://usegalaxy.org.au/published/workflow?id=c7f2d6490128dc3c, https://usegalaxy.org.au/published/workflow?id=cf5ab8fe4e2c0859, https://usegalaxy.org.au/published/workflow?id=d298edda13b382e7, https://usegalaxy.org.au/published/workflow?id=d42d7b1aa47e870f, https://usegalaxy.org.au/published/workflow?id=d62b6717202f42c9, https://usegalaxy.org.au/published/workflow?id=d7f3fc810261e419, https://usegalaxy.org.au/published/workflow?id=d9c181fd954b629a, https://usegalaxy.org.au/published/workflow?id=df4e186069552649, https://usegalaxy.org.au/published/workflow?id=e031af90daa2cadf, https://usegalaxy.org.au/published/workflow?id=e28ca83f14f4ede5, https://usegalaxy.org.au/published/workflow?id=ea687c5613fcce27, https://usegalaxy.org.au/published/workflow?id=f7a866159f1eaecf, https://usegalaxy.org.au/published/workflow?id=fa37223950a91f34, https://usegalaxy.org.au/published/workflow?id=fe1e7fa0bc437ed8, https://usegalaxy.org.au/published/workflow?id=fff2e49bc90e38ca, https://usegalaxy.org/published/workflow?id=07e873a6d75dfe9f, https://usegalaxy.org/published/workflow?id=0993daadf2db5f51, https://usegalaxy.org/published/workflow?id=0ac68ec25f3534da, https://usegalaxy.org/published/workflow?id=1245e9435cbc3985, https://usegalaxy.org/published/workflow?id=137d0f05a71d7acb, https://usegalaxy.org/published/workflow?id=138311394c077827, https://usegalaxy.org/published/workflow?id=1a6f552cfe798883, https://usegalaxy.org/published/workflow?id=1d24cc949c52e475, https://usegalaxy.org/published/workflow?id=1eec2586d1ff908b, https://usegalaxy.org/published/workflow?id=23bca854e549ad48, https://usegalaxy.org/published/workflow?id=25a9f0693ff6d327, https://usegalaxy.org/published/workflow?id=2823322fa85c7ae1, https://usegalaxy.org/published/workflow?id=283bc048cc7a80f5, https://usegalaxy.org/published/workflow?id=284150bb1f296378, https://usegalaxy.org/published/workflow?id=2b41752b8518a87b, https://usegalaxy.org/published/workflow?id=2c5c627c08563398, https://usegalaxy.org/published/workflow?id=2d1d69aac67a387a, https://usegalaxy.org/published/workflow?id=2d64e09025ae8ed4, https://usegalaxy.org/published/workflow?id=2d994cc02ec05ede, https://usegalaxy.org/published/workflow?id=2e92cca68b7979f6, https://usegalaxy.org/published/workflow?id=305fb9f84b053713, https://usegalaxy.org/published/workflow?id=31a6145b0832fa48, https://usegalaxy.org/published/workflow?id=336d74481d2f721a, https://usegalaxy.org/published/workflow?id=3ba73f679558017c, https://usegalaxy.org/published/workflow?id=3db4eb1ecb588d44, https://usegalaxy.org/published/workflow?id=3f7550d5d2bf0b96, https://usegalaxy.org/published/workflow?id=4061e061f659449b, https://usegalaxy.org/published/workflow?id=408c799822cbf6ea, https://usegalaxy.org/published/workflow?id=435f0340bf00c940, https://usegalaxy.org/published/workflow?id=4445c84aa4795a05, https://usegalaxy.org/published/workflow?id=44781c8b0bd667ed, https://usegalaxy.org/published/workflow?id=483a98be358ce21c, https://usegalaxy.org/published/workflow?id=484f8fcf21d67376, https://usegalaxy.org/published/workflow?id=498a8c6329ca5728, https://usegalaxy.org/published/workflow?id=49ca77212cc56ef9, https://usegalaxy.org/published/workflow?id=4a0ad87aa5aa558a, https://usegalaxy.org/published/workflow?id=4bf73376661baafd, https://usegalaxy.org/published/workflow?id=52cc435f50a6ff29, https://usegalaxy.org/published/workflow?id=52e099f693639115, https://usegalaxy.org/published/workflow?id=5719765b1136cb05, https://usegalaxy.org/published/workflow?id=57e6345fda3e2682, https://usegalaxy.org/published/workflow?id=597c4d54f8a8ebe7, https://usegalaxy.org/published/workflow?id=5dfec2a3ae5fa765, https://usegalaxy.org/published/workflow?id=5e079a9ac49a5b8c, https://usegalaxy.org/published/workflow?id=653d553ac2fa51c8, https://usegalaxy.org/published/workflow?id=66bc5f6d71466b7f, https://usegalaxy.org/published/workflow?id=683e725f672b7d9b, https://usegalaxy.org/published/workflow?id=6b511b47176893e3, https://usegalaxy.org/published/workflow?id=6e75ac640853d0dd, https://usegalaxy.org/published/workflow?id=6f836f4b71d399e7, https://usegalaxy.org/published/workflow?id=7072731b51e16923, https://usegalaxy.org/published/workflow?id=74fe080f24f7da84, https://usegalaxy.org/published/workflow?id=7ca9c5203520ca7e, https://usegalaxy.org/published/workflow?id=7dba74c915f63dc1, https://usegalaxy.org/published/workflow?id=7f6900852a81d121, https://usegalaxy.org/published/workflow?id=80afe572b6693ca1, https://usegalaxy.org/published/workflow?id=81183f40d2f3e395, https://usegalaxy.org/published/workflow?id=81f1f0fd6d9235fd, https://usegalaxy.org/published/workflow?id=85dc651884b93cf5, https://usegalaxy.org/published/workflow?id=864da6858d34df08, https://usegalaxy.org/published/workflow?id=8cfbaa14cff5a633, https://usegalaxy.org/published/workflow?id=8d605fbd33003d26, https://usegalaxy.org/published/workflow?id=90f5b512997c70f8, https://usegalaxy.org/published/workflow?id=932b3bc10186f73e, https://usegalaxy.org/published/workflow?id=936ed7447c8e0a2d, https://usegalaxy.org/published/workflow?id=93c1fef4472aa7a8, https://usegalaxy.org/published/workflow?id=95b9fa616345adc6, https://usegalaxy.org/published/workflow?id=961dac8100c6c70c, https://usegalaxy.org/published/workflow?id=9864961cc6132562, https://usegalaxy.org/published/workflow?id=9938a81fb6911412, https://usegalaxy.org/published/workflow?id=9ddfdc9d6cacea88, https://usegalaxy.org/published/workflow?id=a666aaaa32f62487, https://usegalaxy.org/published/workflow?id=a8e0f77cd6ef49f9, https://usegalaxy.org/published/workflow?id=ab0be4897d5355ac, https://usegalaxy.org/published/workflow?id=acada5044d64a30a, https://usegalaxy.org/published/workflow?id=b661fb850c4b4b01, https://usegalaxy.org/published/workflow?id=b6d535f210efa18e, https://usegalaxy.org/published/workflow?id=bb1cb6abfe84a646, https://usegalaxy.org/published/workflow?id=bb8609e8d2d4bd89, https://usegalaxy.org/published/workflow?id=bbc894a79eb0e769, https://usegalaxy.org/published/workflow?id=bd6bfd338ffb9637, https://usegalaxy.org/published/workflow?id=be54e57345ce7ca5, https://usegalaxy.org/published/workflow?id=bfd2e7e63d3e6856, https://usegalaxy.org/published/workflow?id=bfef75672b9c3ea4, https://usegalaxy.org/published/workflow?id=c0a9a2d53b8660de, https://usegalaxy.org/published/workflow?id=c17fa637bcdec86e, https://usegalaxy.org/published/workflow?id=c64719e91e7346a2, https://usegalaxy.org/published/workflow?id=c74a01ba2f2a80d3, https://usegalaxy.org/published/workflow?id=c983ea8a32662cd6, https://usegalaxy.org/published/workflow?id=cd1badac800122c2, https://usegalaxy.org/published/workflow?id=d08135fa13d1745e, https://usegalaxy.org/published/workflow?id=d3a69b0b826331ef, https://usegalaxy.org/published/workflow?id=d3eae9943ce2a62b, https://usegalaxy.org/published/workflow?id=d3f35215e6f45d79, https://usegalaxy.org/published/workflow?id=daaded719dcfd53b, https://usegalaxy.org/published/workflow?id=dae5d5e5df5c4dd7, https://usegalaxy.org/published/workflow?id=dec0cf06fa059e65, https://usegalaxy.org/published/workflow?id=e10859cc568da07c, https://usegalaxy.org/published/workflow?id=e3c1736cca484dda, https://usegalaxy.org/published/workflow?id=e3e646407e3f921d, https://usegalaxy.org/published/workflow?id=e4dd39237df58884, https://usegalaxy.org/published/workflow?id=e4f1cce653812a22, https://usegalaxy.org/published/workflow?id=ebdea787cec2fd72, https://usegalaxy.org/published/workflow?id=f1a54b10d4afce8f, https://usegalaxy.org/published/workflow?id=fa26fd51caea53c7, https://usegalaxy.org/published/workflow?id=fc7b14aafa0b421e, https://usegalaxy.org/published/workflow?id=fd40e50c9f1545ce, https://workflowhub.eu/workflows/1258?version=1, https://workflowhub.eu/workflows/1259?version=1, https://workflowhub.eu/workflows/1607?version=1, https://workflowhub.eu/workflows/1665?version=1, https://workflowhub.eu/workflows/403?version=9, https://workflowhub.eu/workflows/603?version=2, https://workflowhub.eu/workflows/612?version=23, https://workflowhub.eu/workflows/628?version=1, https://workflowhub.eu/workflows/641?version=25, https://workflowhub.eu/workflows/642?version=23, https://workflowhub.eu/workflows/698?version=1, https://workflowhub.eu/workflows/794?version=2 |
assembly/vgp_genome_assembly, ecology/ref-based-rad-seq, proteomics/neoantigen-variant-annotation, proteomics/secretome-prediction |
|
convert_solid_color2nuc |
color2nuc |
Convert Color Space to Nucleotides |
2014-05-19 |
|
1.0.0 |
|
|
To update |
Fasta Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/convert_solid_color2nuc |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/convert_solid_color2nuc |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
coprarna |
coprarna |
Target prediction for prokaryotic trans-acting small RNAs |
2017-11-01 |
https://github.com/PatrickRWright/CopraRNA |
2.1.1 |
coprarna |
2.1.4 |
To update |
RNA, Sequence Analysis |
|
|
|
|
rnateam |
https://github.com/PatrickRWright/CopraRNA |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/coprarna |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
correlation |
cor2 |
Correlation for numeric columns |
2014-07-28 |
|
1.0.0 |
rpy |
|
To update |
Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/correlation |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/correlation |
|
|
|
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
110 |
143 |
395 |
896 |
93 |
756 |
327 |
5569 |
21 |
28 |
199 |
263 |
8 |
8 |
19 |
19 |
6747 |
940 |
935 |
232 |
|
|
|
count_gff_features |
count_gff_features |
Count GFF Features |
2014-07-28 |
|
0.2 |
galaxy-ops |
1.1.0 |
To update |
Sequence Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/count_gff_features |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/count_gff_features |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
123 |
139 |
283 |
332 |
335 |
653 |
773 |
1411 |
55 |
81 |
488 |
589 |
10 |
10 |
19 |
19 |
2351 |
1563 |
883 |
523 |
https://dev.workflowhub.eu/workflows/1380?version=1, https://workflowhub.eu/workflows/1469?version=1 |
microbiome/metaplasmidome_query |
|
count_roi_variants |
count_roi_variants |
Count sequence variants in region of interest in BAM file |
2016-02-05 |
https://github.com/peterjc/pico_galaxy/tree/master/tools/count_roi_variants |
0.0.6 |
samtools |
1.22.1 |
To update |
Assembly, SAM |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/count_roi_variants |
https://github.com/peterjc/pico_galaxy/tree/master/tools/count_roi_variants |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
coverage |
gops_coverage_1 |
Coverage of a set of intervals on second set of intervals |
2014-04-01 |
https://github.com/galaxyproject/gops |
1.0.0 |
bx-python |
0.14.0 |
To update |
Genomic Interval Operations |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/coverage |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/gops/coverage |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
43 |
60 |
1663 |
1858 |
183 |
2116 |
3611 |
44240 |
14 |
18 |
291 |
369 |
1 |
2 |
4 |
14 |
46481 |
5569 |
2196 |
241 |
https://usegalaxy.eu/published/workflow?id=668a9f5da768fa30, https://usegalaxy.eu/published/workflow?id=99c4dce722c023d1, https://usegalaxy.org/published/workflow?id=08ca80ae36c8c576, https://usegalaxy.org/published/workflow?id=468c5a8fe7a40778, https://usegalaxy.org/published/workflow?id=9cc814d43379c2a6, https://usegalaxy.org/published/workflow?id=e6550f5289099efc |
|
|
coverage_stats |
coverage_stats |
BAM coverage statistics using samtools idxstats and depth |
2014-11-20 |
https://github.com/peterjc/pico_galaxy/tree/master/tools/coverage_stats |
0.1.0 |
samtools |
1.22.1 |
To update |
Assembly, SAM |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/coverage_stats |
https://github.com/peterjc/pico_galaxy/tree/master/tools/coverage_stats |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
cpat |
cpat |
Coding-potential assessment tool using an alignment-free logistic regression model. |
2023-02-01 |
https://github.com/liguowang/cpat |
3.0.5 |
cpat |
3.0.5 |
Up-to-date |
Transcriptomics |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/cpat |
https://github.com/bgruening/galaxytools/tree/master/tools/cpat |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
56 |
56 |
228 |
228 |
70 |
70 |
298 |
298 |
11 |
11 |
173 |
173 |
0 |
0 |
0 |
0 |
699 |
699 |
137 |
137 |
https://dev.workflowhub.eu/workflows/1324?version=3, https://usegalaxy.eu/published/workflow?id=11eba1b28ec87963, https://usegalaxy.eu/published/workflow?id=1f9a9a7998ef5ab3, https://usegalaxy.eu/published/workflow?id=47a0407867a90f95, https://usegalaxy.eu/published/workflow?id=9b025479fade745d, https://usegalaxy.eu/published/workflow?id=b7a3cbcd32734e8b, https://usegalaxy.org.au/published/workflow?id=6e1e24f9e0326930, https://usegalaxy.org.au/published/workflow?id=a1b97364f84022cf, https://workflowhub.eu/workflows/1688?version=1, https://workflowhub.eu/workflows/878?version=1 |
transcriptomics/differential-isoform-expression |
|
create_tool_recommendation_model |
create_tool_recommendation_model |
Create model to recommend tools |
2019-08-20 |
https://github.com/bgruening/galaxytools |
0.0.5 |
python |
|
To update |
Machine Learning |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/recommendation_training/tools/tool_recommendation_model |
https://github.com/bgruening/galaxytools/tree/master/tools/tool_recommendation_model |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
26 |
26 |
331 |
448 |
33 |
33 |
74 |
74 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
522 |
405 |
59 |
59 |
|
|
|
crispr_recognition_tool |
crispr_recognition_tool |
CRISPR Recognition Tool |
2015-02-28 |
|
1.2.0 |
crisper_recognition_tool |
1.2 |
To update |
Sequence Analysis |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/crt |
https://github.com/bgruening/galaxytools/tree/master/tools/crt |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
200 |
218 |
4369 |
4491 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4491 |
4369 |
218 |
200 |
https://usegalaxy.eu/published/workflow?id=87231a6a7938cb95 |
|
|
ctd_batch |
ctdBatch_1 |
CTD analysis of chemicals, diseases, or genes |
2013-09-25 |
|
1.0.0 |
|
|
To update |
Sequence Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/ctd_batch |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/ctd_batch |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
39 |
50 |
182 |
219 |
1 |
161 |
1 |
447 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
666 |
183 |
211 |
40 |
https://usegalaxy.org/published/workflow?id=44b27a1296633366 |
|
|
cummerbund |
cummeRbund |
Wrapper for the Bioconductor cummeRbund library |
2015-04-24 |
https://bioconductor.org/packages/release/bioc/html/cummeRbund.html |
2.16.0 |
fonts-conda-ecosystem |
|
To update |
RNA, Visualization |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/cummerbund |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/cummerbund |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
88 |
168 |
1077 |
1812 |
451 |
2050 |
2948 |
15186 |
55 |
159 |
2429 |
3574 |
0 |
0 |
0 |
0 |
20572 |
6454 |
2377 |
594 |
https://usegalaxy.eu/published/workflow?id=17e720bee3b9104f, https://usegalaxy.org.au/published/workflow?id=189c584ea4bde59a, https://usegalaxy.org.au/published/workflow?id=1ac197bae296b2bf, https://usegalaxy.org.au/published/workflow?id=427e27f87b8048a3, https://usegalaxy.org.au/published/workflow?id=581c455f74aa55a4, https://usegalaxy.org.au/published/workflow?id=80a1493fb9593bb3, https://usegalaxy.org.au/published/workflow?id=cc6de673126c56cb, https://usegalaxy.org.au/published/workflow?id=d3989c6c2c663cd3, https://usegalaxy.org/published/workflow?id=82681bd5f059e39a |
|
|
cummerbund_to_tabular |
cummerbund_to_cuffdiff |
Regenerate the tabular files generated by cuffdiff from a cummeRbund SQLite database. |
2014-12-22 |
|
1.0.1 |
|
|
To update |
Convert Formats, Next Gen Mappers |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/cummerbund_to_tabular |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/cummerbund_to_tabular |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
31 |
97 |
641 |
1208 |
91 |
484 |
877 |
2691 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3899 |
1518 |
581 |
122 |
https://usegalaxy.eu/published/workflow?id=17e720bee3b9104f, https://usegalaxy.org/published/workflow?id=82681bd5f059e39a |
|
|
cut_columns |
Cut1 |
Select columns from a dataset. |
2012-12-04 |
|
1.0.2 |
|
|
To update |
Text Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/cut_columns |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/cut_columns |
|
|
|
|
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
1 |
1 |
0 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
13097 |
14367 |
2008771 |
2076808 |
13402 |
31725 |
362755 |
824052 |
2473 |
2780 |
130240 |
135486 |
649 |
651 |
10998 |
11197 |
3047543 |
2512764 |
49523 |
29621 |
https://dev.workflowhub.eu/workflows/1016?version=1, https://dev.workflowhub.eu/workflows/1017?version=1, https://dev.workflowhub.eu/workflows/1021?version=1, https://dev.workflowhub.eu/workflows/1023?version=1, https://dev.workflowhub.eu/workflows/1024?version=1, https://dev.workflowhub.eu/workflows/1025?version=1, https://dev.workflowhub.eu/workflows/1026?version=1, https://dev.workflowhub.eu/workflows/1077?version=2, https://dev.workflowhub.eu/workflows/1078?version=1, https://dev.workflowhub.eu/workflows/1080?version=1, https://dev.workflowhub.eu/workflows/1083?version=1, https://dev.workflowhub.eu/workflows/1084?version=1, https://dev.workflowhub.eu/workflows/1085?version=2, https://dev.workflowhub.eu/workflows/1087?version=2, https://dev.workflowhub.eu/workflows/1088?version=1, https://dev.workflowhub.eu/workflows/1090?version=2, https://dev.workflowhub.eu/workflows/1098?version=1, https://dev.workflowhub.eu/workflows/1100?version=2, https://dev.workflowhub.eu/workflows/1113?version=2, https://dev.workflowhub.eu/workflows/1140?version=2, https://dev.workflowhub.eu/workflows/1149?version=2, https://dev.workflowhub.eu/workflows/1165?version=2, https://dev.workflowhub.eu/workflows/1173?version=2, https://dev.workflowhub.eu/workflows/1177?version=2, https://dev.workflowhub.eu/workflows/1206?version=1, https://dev.workflowhub.eu/workflows/1212?version=1, https://dev.workflowhub.eu/workflows/1219?version=2, https://dev.workflowhub.eu/workflows/1225?version=1, https://dev.workflowhub.eu/workflows/1228?version=1, https://dev.workflowhub.eu/workflows/1233?version=1, https://dev.workflowhub.eu/workflows/1240?version=1, https://dev.workflowhub.eu/workflows/1248?version=2, https://dev.workflowhub.eu/workflows/1250?version=2, https://dev.workflowhub.eu/workflows/1253?version=1, https://dev.workflowhub.eu/workflows/1257?version=1, https://dev.workflowhub.eu/workflows/1263?version=1, https://dev.workflowhub.eu/workflows/1272?version=2, https://dev.workflowhub.eu/workflows/1274?version=2, https://dev.workflowhub.eu/workflows/1297?version=1, https://dev.workflowhub.eu/workflows/1301?version=2, https://dev.workflowhub.eu/workflows/1303?version=1, https://dev.workflowhub.eu/workflows/1307?version=1, https://dev.workflowhub.eu/workflows/1311?version=2, https://dev.workflowhub.eu/workflows/1316?version=1, https://dev.workflowhub.eu/workflows/1318?version=2, https://dev.workflowhub.eu/workflows/1324?version=3, https://dev.workflowhub.eu/workflows/1325?version=1, https://dev.workflowhub.eu/workflows/1326?version=3, https://dev.workflowhub.eu/workflows/1329?version=5, https://dev.workflowhub.eu/workflows/1330?version=1, https://dev.workflowhub.eu/workflows/1332?version=1, https://dev.workflowhub.eu/workflows/1338?version=1, https://dev.workflowhub.eu/workflows/1343?version=2, https://dev.workflowhub.eu/workflows/1351?version=1, https://dev.workflowhub.eu/workflows/1353?version=1, https://dev.workflowhub.eu/workflows/1354?version=1, https://dev.workflowhub.eu/workflows/1359?version=1, https://dev.workflowhub.eu/workflows/1365?version=1, https://dev.workflowhub.eu/workflows/1368?version=1, https://dev.workflowhub.eu/workflows/1369?version=1, https://dev.workflowhub.eu/workflows/1372?version=1, https://dev.workflowhub.eu/workflows/1377?version=1, https://dev.workflowhub.eu/workflows/1380?version=1, https://dev.workflowhub.eu/workflows/1388?version=1, https://dev.workflowhub.eu/workflows/1389?version=1, https://dev.workflowhub.eu/workflows/1390?version=1, https://dev.workflowhub.eu/workflows/1391?version=1, https://dev.workflowhub.eu/workflows/1392?version=1, https://dev.workflowhub.eu/workflows/1440?version=1, https://dev.workflowhub.eu/workflows/1441?version=1, https://dev.workflowhub.eu/workflows/583?version=1, https://usegalaxy.cz/published/workflow?id=a5241f01bb65bd38, https://usegalaxy.eu/published/workflow?id=002a51bdef00e14d, https://usegalaxy.eu/published/workflow?id=00e246ea459b0991, https://usegalaxy.eu/published/workflow?id=0135ee4b3fa0cbce, https://usegalaxy.eu/published/workflow?id=013cc98f55b01d5d, https://usegalaxy.eu/published/workflow?id=01fe4c590e608103, https://usegalaxy.eu/published/workflow?id=020f877513f2d0d1, https://usegalaxy.eu/published/workflow?id=023a0ee62dd1f593, https://usegalaxy.eu/published/workflow?id=02700454f57eb556, https://usegalaxy.eu/published/workflow?id=02a212cc9f134570, https://usegalaxy.eu/published/workflow?id=032a7281a86eba0d, https://usegalaxy.eu/published/workflow?id=032ad839dab7ae70, https://usegalaxy.eu/published/workflow?id=036990ecf300a99f, https://usegalaxy.eu/published/workflow?id=03bb4c20a1f4b4de, https://usegalaxy.eu/published/workflow?id=03be9d62e8e4a129, https://usegalaxy.eu/published/workflow?id=03e52c8c71710cae, https://usegalaxy.eu/published/workflow?id=03e8b0d3dcedc092, https://usegalaxy.eu/published/workflow?id=0444c98a3ca2a3ca, https://usegalaxy.eu/published/workflow?id=05bd1d9c61df5d16, https://usegalaxy.eu/published/workflow?id=05f5f040337786bf, https://usegalaxy.eu/published/workflow?id=06544e74f583fd05, https://usegalaxy.eu/published/workflow?id=069d99391a69baf4, https://usegalaxy.eu/published/workflow?id=075c4126e66def01, https://usegalaxy.eu/published/workflow?id=079e2a968d8e6176, https://usegalaxy.eu/published/workflow?id=07e1478df88a17cc, https://usegalaxy.eu/published/workflow?id=085c3a4c89d137b5, https://usegalaxy.eu/published/workflow?id=089e5e83b1de0511, https://usegalaxy.eu/published/workflow?id=098f43ded1b5fa7f, https://usegalaxy.eu/published/workflow?id=09c7069ae409c362, https://usegalaxy.eu/published/workflow?id=0a3ebee985c26060, https://usegalaxy.eu/published/workflow?id=0ae360bfbb3b2494, https://usegalaxy.eu/published/workflow?id=0aee7ffa5f6384bd, https://usegalaxy.eu/published/workflow?id=0bc971d84327da50, https://usegalaxy.eu/published/workflow?id=0c3ce9feb83f7920, https://usegalaxy.eu/published/workflow?id=0c94260298199d8b, https://usegalaxy.eu/published/workflow?id=0cf3c2114ab65858, https://usegalaxy.eu/published/workflow?id=0de5fcc38ef1501d, https://usegalaxy.eu/published/workflow?id=0e492839192d26e0, https://usegalaxy.eu/published/workflow?id=0e6e181234b48121, https://usegalaxy.eu/published/workflow?id=0f207a15b6f7fa10, https://usegalaxy.eu/published/workflow?id=0fb12e3a127fc4be, https://usegalaxy.eu/published/workflow?id=1031e4c4f18e020e, https://usegalaxy.eu/published/workflow?id=1151052f4393852a, https://usegalaxy.eu/published/workflow?id=117177b0c231dc55, https://usegalaxy.eu/published/workflow?id=12b0bd336c76a874, https://usegalaxy.eu/published/workflow?id=12bf85cdc8102bb5, https://usegalaxy.eu/published/workflow?id=12c80c5b5e2305d8, https://usegalaxy.eu/published/workflow?id=133b299125ff9905, https://usegalaxy.eu/published/workflow?id=14714876dda7186d, https://usegalaxy.eu/published/workflow?id=1483534f49b826bf, https://usegalaxy.eu/published/workflow?id=152223c8aed27357, https://usegalaxy.eu/published/workflow?id=1590085d315aa80e, https://usegalaxy.eu/published/workflow?id=16080c3c1488a8b5, https://usegalaxy.eu/published/workflow?id=16418e8b023ff226, https://usegalaxy.eu/published/workflow?id=1749616cec69fb00, https://usegalaxy.eu/published/workflow?id=17a1433d0b681d4a, https://usegalaxy.eu/published/workflow?id=17ad465d9515cd25, https://usegalaxy.eu/published/workflow?id=1809fcaec264eac9, https://usegalaxy.eu/published/workflow?id=18af9bbae833f8fe, https://usegalaxy.eu/published/workflow?id=194a05d42687b524, https://usegalaxy.eu/published/workflow?id=19bb57f8cfa48bb9, https://usegalaxy.eu/published/workflow?id=19de5cbae7f48103, https://usegalaxy.eu/published/workflow?id=1ac0a15758277730, https://usegalaxy.eu/published/workflow?id=1af73dc855d0a5ed, https://usegalaxy.eu/published/workflow?id=1b72af1870c540d6, https://usegalaxy.eu/published/workflow?id=1bb084f1bc102734, https://usegalaxy.eu/published/workflow?id=1c267e93aa8015e6, https://usegalaxy.eu/published/workflow?id=1d1ae39386b5c318, https://usegalaxy.eu/published/workflow?id=1d2e17a4f71f2455, https://usegalaxy.eu/published/workflow?id=1da7ac8eaf891f39, https://usegalaxy.eu/published/workflow?id=1da86d74f8535f4e, https://usegalaxy.eu/published/workflow?id=1e02a7292e9974b1, https://usegalaxy.eu/published/workflow?id=1e7f4ba6261f979c, https://usegalaxy.eu/published/workflow?id=1f2a1438e41188f2, https://usegalaxy.eu/published/workflow?id=1f3f6757de60d3cf, https://usegalaxy.eu/published/workflow?id=1f88311a8e365c17, https://usegalaxy.eu/published/workflow?id=204854b8ec94da85, https://usegalaxy.eu/published/workflow?id=20592f292c205954, https://usegalaxy.eu/published/workflow?id=20ada53472782c9b, https://usegalaxy.eu/published/workflow?id=21a17d6c473a88c0, https://usegalaxy.eu/published/workflow?id=21a3f72851f29925, https://usegalaxy.eu/published/workflow?id=21dd4bd16579fc12, https://usegalaxy.eu/published/workflow?id=21fc597d983f1194, https://usegalaxy.eu/published/workflow?id=220961d803697f54, https://usegalaxy.eu/published/workflow?id=2294ef9515bcf972, https://usegalaxy.eu/published/workflow?id=229a955d29bd4064, https://usegalaxy.eu/published/workflow?id=2424282f793f0f1b, https://usegalaxy.eu/published/workflow?id=2497292e98937a5f, https://usegalaxy.eu/published/workflow?id=2671a5f85b2cccfe, https://usegalaxy.eu/published/workflow?id=270b6f82efab28b2, https://usegalaxy.eu/published/workflow?id=27fca972f1d1a312, https://usegalaxy.eu/published/workflow?id=28af61ead68e0976, https://usegalaxy.eu/published/workflow?id=291c36e1b18e9deb, https://usegalaxy.eu/published/workflow?id=29c97d43eeb8ed63, https://usegalaxy.eu/published/workflow?id=2a33d4fcb806e942, https://usegalaxy.eu/published/workflow?id=2a39dbc8fc6dd5d3, https://usegalaxy.eu/published/workflow?id=2a73d658446747de, https://usegalaxy.eu/published/workflow?id=2b888e200dfd91bc, https://usegalaxy.eu/published/workflow?id=2c2f0b4312bae4f4, https://usegalaxy.eu/published/workflow?id=2c3d05023c02113e, https://usegalaxy.eu/published/workflow?id=2d0400b5d05c6c10, https://usegalaxy.eu/published/workflow?id=2d2d0c2231babc50, https://usegalaxy.eu/published/workflow?id=2d509fad86eb97fb, https://usegalaxy.eu/published/workflow?id=2e418c5810012e5a, https://usegalaxy.eu/published/workflow?id=2e6561d8dadc9e17, https://usegalaxy.eu/published/workflow?id=2e6ed783bdf05d16, https://usegalaxy.eu/published/workflow?id=2f094f5e1f391529, https://usegalaxy.eu/published/workflow?id=2f37c35ade97aa8d, https://usegalaxy.eu/published/workflow?id=3010ecad1a342331, https://usegalaxy.eu/published/workflow?id=3118d383c81cf805, https://usegalaxy.eu/published/workflow?id=3192f92ac4d389b8, https://usegalaxy.eu/published/workflow?id=319bc351f7a8e358, https://usegalaxy.eu/published/workflow?id=31c6dcd3a25620df, https://usegalaxy.eu/published/workflow?id=31f8c7c46207432f, https://usegalaxy.eu/published/workflow?id=321ea55011f1248f, https://usegalaxy.eu/published/workflow?id=342a5df69951e3d7, https://usegalaxy.eu/published/workflow?id=344cd3a3c2ce5302, https://usegalaxy.eu/published/workflow?id=373d861ef4b0081a, https://usegalaxy.eu/published/workflow?id=376119528377a3ae, https://usegalaxy.eu/published/workflow?id=379642036b6f5a66, https://usegalaxy.eu/published/workflow?id=37b04b02ec08e84f, https://usegalaxy.eu/published/workflow?id=37e51e215684bdcc, https://usegalaxy.eu/published/workflow?id=389d992ff7268247, https://usegalaxy.eu/published/workflow?id=399048afb4acef3d, https://usegalaxy.eu/published/workflow?id=39dd6365ff076dc4, https://usegalaxy.eu/published/workflow?id=3a3e2d50fe7a9ee3, https://usegalaxy.eu/published/workflow?id=3b57fc81001667b5, https://usegalaxy.eu/published/workflow?id=3c6ff60d1d3ceb3d, https://usegalaxy.eu/published/workflow?id=3e01a2c6d954ae6e, https://usegalaxy.eu/published/workflow?id=3e255a5b7026d26e, https://usegalaxy.eu/published/workflow?id=3eb6663a66f8e69a, https://usegalaxy.eu/published/workflow?id=3f5414bb38b47fcf, https://usegalaxy.eu/published/workflow?id=416141b245073406, https://usegalaxy.eu/published/workflow?id=41df8c7821b5f2fc, https://usegalaxy.eu/published/workflow?id=41e9882300fa2386, https://usegalaxy.eu/published/workflow?id=44c92c04f1d14631, https://usegalaxy.eu/published/workflow?id=4516fe237a7112cc, https://usegalaxy.eu/published/workflow?id=45c5e0a1e10edc54, https://usegalaxy.eu/published/workflow?id=4643edf74f3eaec3, https://usegalaxy.eu/published/workflow?id=471eb8b4c54f897d, https://usegalaxy.eu/published/workflow?id=475ea16f943cc013, https://usegalaxy.eu/published/workflow?id=47a0407867a90f95, https://usegalaxy.eu/published/workflow?id=4856e3522b2ee059, https://usegalaxy.eu/published/workflow?id=48fe9c4de045d414, https://usegalaxy.eu/published/workflow?id=4949751217c0e211, https://usegalaxy.eu/published/workflow?id=497b82d3b92dc076, https://usegalaxy.eu/published/workflow?id=4c0000eb4995a310, https://usegalaxy.eu/published/workflow?id=4c04ac4d83943437, https://usegalaxy.eu/published/workflow?id=4c3a9b574f37eebb, https://usegalaxy.eu/published/workflow?id=4c81726bde25c36a, https://usegalaxy.eu/published/workflow?id=4ca06bc64bf896a3, https://usegalaxy.eu/published/workflow?id=4cb25c0bb103f54f, https://usegalaxy.eu/published/workflow?id=4d32b1b3ac0a7161, https://usegalaxy.eu/published/workflow?id=4d41ee83fc0040d4, https://usegalaxy.eu/published/workflow?id=4e57c5cf750afadd, https://usegalaxy.eu/published/workflow?id=4f21205e71cabd37, https://usegalaxy.eu/published/workflow?id=4f9f050e34747d51, https://usegalaxy.eu/published/workflow?id=5115299e77df8104, https://usegalaxy.eu/published/workflow?id=511b023121b7c488, https://usegalaxy.eu/published/workflow?id=516b4d4146e4af66, https://usegalaxy.eu/published/workflow?id=51cce3b98da3e822, https://usegalaxy.eu/published/workflow?id=522500fac247be6f, https://usegalaxy.eu/published/workflow?id=5374daf356516a40, https://usegalaxy.eu/published/workflow?id=5385abe9c2589b69, https://usegalaxy.eu/published/workflow?id=5395e76fa828c343, https://usegalaxy.eu/published/workflow?id=54590ccd11ffbf65, https://usegalaxy.eu/published/workflow?id=55a9fc5d30392777, https://usegalaxy.eu/published/workflow?id=57cc33ed64d71982, https://usegalaxy.eu/published/workflow?id=57cfe5062c8e01bf, https://usegalaxy.eu/published/workflow?id=5826e573b6f93762, https://usegalaxy.eu/published/workflow?id=587e4d5ce25f48da, https://usegalaxy.eu/published/workflow?id=58db3e1996a8f093, https://usegalaxy.eu/published/workflow?id=5a16af00bf8bf57b, https://usegalaxy.eu/published/workflow?id=5ad406442ec21345, https://usegalaxy.eu/published/workflow?id=5bb7691b176d1010, https://usegalaxy.eu/published/workflow?id=5bf6718e7d6158d2, https://usegalaxy.eu/published/workflow?id=5cc732a6b4338bf5, https://usegalaxy.eu/published/workflow?id=5d793801998146bc, https://usegalaxy.eu/published/workflow?id=5e09d5e991009cda, https://usegalaxy.eu/published/workflow?id=5e1906290f5b4d8a, https://usegalaxy.eu/published/workflow?id=5e4774036aa20b80, https://usegalaxy.eu/published/workflow?id=5ec0d6d108e02e1a, https://usegalaxy.eu/published/workflow?id=5ed38d8114bcd6f7, https://usegalaxy.eu/published/workflow?id=5f053303601cc630, https://usegalaxy.eu/published/workflow?id=5f0faac42b0a5062, https://usegalaxy.eu/published/workflow?id=5fb6cb6c80a5c62f, https://usegalaxy.eu/published/workflow?id=607ca3a9d45bd080, https://usegalaxy.eu/published/workflow?id=60e0b2a28a900178, https://usegalaxy.eu/published/workflow?id=612dc5bdf388585f, https://usegalaxy.eu/published/workflow?id=6201ec86d380aef1, https://usegalaxy.eu/published/workflow?id=6306656ec10bd18f, https://usegalaxy.eu/published/workflow?id=63964ba7d9edce74, https://usegalaxy.eu/published/workflow?id=63c91ea322cd2819, https://usegalaxy.eu/published/workflow?id=64abcddeb516a712, https://usegalaxy.eu/published/workflow?id=652433160b04b232, https://usegalaxy.eu/published/workflow?id=6573f3b1606b7f09, https://usegalaxy.eu/published/workflow?id=668a9f5da768fa30, https://usegalaxy.eu/published/workflow?id=66f2a58637054c16, https://usegalaxy.eu/published/workflow?id=67e20e3082d24fbd, https://usegalaxy.eu/published/workflow?id=6865f33cffca4922, https://usegalaxy.eu/published/workflow?id=69cdd404592535ec, https://usegalaxy.eu/published/workflow?id=6aa2891bd2b41f32, https://usegalaxy.eu/published/workflow?id=6aaf2b342d57f78d, https://usegalaxy.eu/published/workflow?id=6c14b08a7ef7e79a, https://usegalaxy.eu/published/workflow?id=6c91fe92ef069d64, https://usegalaxy.eu/published/workflow?id=6cb85fe1ad0c9f3b, https://usegalaxy.eu/published/workflow?id=6da171871d4f3fd5, https://usegalaxy.eu/published/workflow?id=6e0330de5d80e619, https://usegalaxy.eu/published/workflow?id=6e1fe7372e93fae0, https://usegalaxy.eu/published/workflow?id=6e5f0d05c91876c2, https://usegalaxy.eu/published/workflow?id=6ed1016dfdf9f928, https://usegalaxy.eu/published/workflow?id=6f4bbed7a320dc2f, https://usegalaxy.eu/published/workflow?id=6fc2b9bea5b75a49, https://usegalaxy.eu/published/workflow?id=700fa3ab11a8f3e2, https://usegalaxy.eu/published/workflow?id=70ec8b1719e25982, https://usegalaxy.eu/published/workflow?id=713a5485e2007f90, https://usegalaxy.eu/published/workflow?id=715ca378c1d68de3, https://usegalaxy.eu/published/workflow?id=71816adecac46e74, https://usegalaxy.eu/published/workflow?id=71a6d128a09210f0, https://usegalaxy.eu/published/workflow?id=71c4ec4805f83cd5, https://usegalaxy.eu/published/workflow?id=732fa536cdc70c96, https://usegalaxy.eu/published/workflow?id=7337d15d121596da, https://usegalaxy.eu/published/workflow?id=739214a6dfa194e1, https://usegalaxy.eu/published/workflow?id=73a9ab4f0f0b9907, https://usegalaxy.eu/published/workflow?id=73aa794916b91bb2, https://usegalaxy.eu/published/workflow?id=73dc2384535bf6af, https://usegalaxy.eu/published/workflow?id=7582a48054c44d6e, https://usegalaxy.eu/published/workflow?id=76d3408d0d22ad05, https://usegalaxy.eu/published/workflow?id=7705b1e25110baf4, https://usegalaxy.eu/published/workflow?id=77e85bde57477194, https://usegalaxy.eu/published/workflow?id=77fa6e5a8fa3f911, https://usegalaxy.eu/published/workflow?id=78dc6fca5b58ec05, https://usegalaxy.eu/published/workflow?id=79b4ae4403772098, https://usegalaxy.eu/published/workflow?id=79b5afb125e3c3da, https://usegalaxy.eu/published/workflow?id=79eb28066236e836, https://usegalaxy.eu/published/workflow?id=7b4a9aebb09b51ca, https://usegalaxy.eu/published/workflow?id=7bda7ae31c427347, https://usegalaxy.eu/published/workflow?id=7caa58e36df6ad03, https://usegalaxy.eu/published/workflow?id=7cbda24fd0767899, https://usegalaxy.eu/published/workflow?id=7dd7908f4c8d722a, https://usegalaxy.eu/published/workflow?id=7e383fe34031a9d0, https://usegalaxy.eu/published/workflow?id=7e68cf8a67efa8e9, https://usegalaxy.eu/published/workflow?id=7ea91d562a02eb2f, https://usegalaxy.eu/published/workflow?id=7f76e43f19b27b22, https://usegalaxy.eu/published/workflow?id=8156471dd0223d67, https://usegalaxy.eu/published/workflow?id=8172bf190ce30036, https://usegalaxy.eu/published/workflow?id=81f1927bfe3ffea1, https://usegalaxy.eu/published/workflow?id=82879b0eb4a71ad0, https://usegalaxy.eu/published/workflow?id=82a60d94d699efbf, https://usegalaxy.eu/published/workflow?id=82b6871682f1659a, https://usegalaxy.eu/published/workflow?id=82ef590b5821805d, https://usegalaxy.eu/published/workflow?id=836cc09d17eaecb0, https://usegalaxy.eu/published/workflow?id=841367f185aaade4, https://usegalaxy.eu/published/workflow?id=84236d781f7dd2ad, https://usegalaxy.eu/published/workflow?id=843c10c447496280, https://usegalaxy.eu/published/workflow?id=847403b72dd346ff, https://usegalaxy.eu/published/workflow?id=84c95f31896213fd, https://usegalaxy.eu/published/workflow?id=86900be4282d4b1d, https://usegalaxy.eu/published/workflow?id=87cc0cd143a12c41, https://usegalaxy.eu/published/workflow?id=88f5cef7e4146520, https://usegalaxy.eu/published/workflow?id=895b8f5736bb92bb, https://usegalaxy.eu/published/workflow?id=8a14cda6140acab7, https://usegalaxy.eu/published/workflow?id=8a85663218676b59, https://usegalaxy.eu/published/workflow?id=8af41219411062ad, https://usegalaxy.eu/published/workflow?id=8bb3bc745ea62bed, https://usegalaxy.eu/published/workflow?id=8bc1c3b9e665ea37, https://usegalaxy.eu/published/workflow?id=8be366ad6a42408b, https://usegalaxy.eu/published/workflow?id=8c4331f1bac67aba, https://usegalaxy.eu/published/workflow?id=8c6371b360217f72, https://usegalaxy.eu/published/workflow?id=8c7e972020799d57, https://usegalaxy.eu/published/workflow?id=8d00a8b70b0c019c, https://usegalaxy.eu/published/workflow?id=8e997deae5a382c4, https://usegalaxy.eu/published/workflow?id=8f105de48f7f1d9d, https://usegalaxy.eu/published/workflow?id=8f677efac7100097, https://usegalaxy.eu/published/workflow?id=8f9dc5ba61a02815, https://usegalaxy.eu/published/workflow?id=8ff9d3ad20e87819, https://usegalaxy.eu/published/workflow?id=912b81c444e35045, https://usegalaxy.eu/published/workflow?id=9155ed0e7a6a7b60, https://usegalaxy.eu/published/workflow?id=915ffef5b14c871e, https://usegalaxy.eu/published/workflow?id=921cab3e6faf30be, https://usegalaxy.eu/published/workflow?id=92760fc19ef120ce, https://usegalaxy.eu/published/workflow?id=92dafb3d1c06e074, https://usegalaxy.eu/published/workflow?id=930a9757252d3ca6, https://usegalaxy.eu/published/workflow?id=9472be79da012999, https://usegalaxy.eu/published/workflow?id=9588311136ac8794, https://usegalaxy.eu/published/workflow?id=95c4d5549e820d88, https://usegalaxy.eu/published/workflow?id=95f420d8856bf725, https://usegalaxy.eu/published/workflow?id=9667bf36217083b7, https://usegalaxy.eu/published/workflow?id=972db4abc51bb3ab, https://usegalaxy.eu/published/workflow?id=97bff2c5f4556a3c, https://usegalaxy.eu/published/workflow?id=985044b4b2c51425, https://usegalaxy.eu/published/workflow?id=987a2abb5cd56e57, https://usegalaxy.eu/published/workflow?id=99c4dce722c023d1, https://usegalaxy.eu/published/workflow?id=9a0275211e74698a, https://usegalaxy.eu/published/workflow?id=9a657909d6191203, https://usegalaxy.eu/published/workflow?id=9a83043d5e847318, https://usegalaxy.eu/published/workflow?id=9a8b5e99ca9500e3, https://usegalaxy.eu/published/workflow?id=9a9bbd8046da7b19, https://usegalaxy.eu/published/workflow?id=9aa290ce1927d700, https://usegalaxy.eu/published/workflow?id=9ac51f1eeaff5e9c, https://usegalaxy.eu/published/workflow?id=9ac74bd7d1000093, https://usegalaxy.eu/published/workflow?id=9b025479fade745d, https://usegalaxy.eu/published/workflow?id=9b4e6c5f2c1babce, https://usegalaxy.eu/published/workflow?id=9bafb4701a4c0426, https://usegalaxy.eu/published/workflow?id=9c0b67496dfe52b2, https://usegalaxy.eu/published/workflow?id=9c5a0596956064a6, https://usegalaxy.eu/published/workflow?id=9c7a218993788493, https://usegalaxy.eu/published/workflow?id=9d209bcdae1a475e, https://usegalaxy.eu/published/workflow?id=9e0d784860d6cc91, https://usegalaxy.eu/published/workflow?id=9e4df2893767591a, https://usegalaxy.eu/published/workflow?id=9eb29cc96d8d75c2, https://usegalaxy.eu/published/workflow?id=9ef76d764d9961b2, https://usegalaxy.eu/published/workflow?id=9f2d18f0d0896e8b, https://usegalaxy.eu/published/workflow?id=a018307be3563f28, https://usegalaxy.eu/published/workflow?id=a28c207730e7e13d, https://usegalaxy.eu/published/workflow?id=a2b386eef5645acd, https://usegalaxy.eu/published/workflow?id=a2c46deea34d9d80, https://usegalaxy.eu/published/workflow?id=a2daeb488bee0152, https://usegalaxy.eu/published/workflow?id=a31100610fba17a1, https://usegalaxy.eu/published/workflow?id=a337bfb2eb1e583f, https://usegalaxy.eu/published/workflow?id=a372f693471beb56, https://usegalaxy.eu/published/workflow?id=a37d1e0db16cfb67, https://usegalaxy.eu/published/workflow?id=a3f082ff30357040, https://usegalaxy.eu/published/workflow?id=a49275eb8b2b2ecb, https://usegalaxy.eu/published/workflow?id=a53f78aa6866b811, https://usegalaxy.eu/published/workflow?id=a639ea0419de1078, https://usegalaxy.eu/published/workflow?id=a65a17122d2234a8, https://usegalaxy.eu/published/workflow?id=a6ade348ef143292, https://usegalaxy.eu/published/workflow?id=a6dd62ab4b9a0725, https://usegalaxy.eu/published/workflow?id=a705370bc2c13d5c, https://usegalaxy.eu/published/workflow?id=a7a6d8ecc2795f58, https://usegalaxy.eu/published/workflow?id=a7dc6e0c43cb6d6d, https://usegalaxy.eu/published/workflow?id=a824cfdee241177f, https://usegalaxy.eu/published/workflow?id=a84bac86ec183d46, https://usegalaxy.eu/published/workflow?id=a8f829deb69b30ab, https://usegalaxy.eu/published/workflow?id=a9469155eee12ff1, https://usegalaxy.eu/published/workflow?id=aa6dc57f5c67fb4b, https://usegalaxy.eu/published/workflow?id=abd1cb3457338eb5, https://usegalaxy.eu/published/workflow?id=ac6eb99f70d35999, https://usegalaxy.eu/published/workflow?id=ada52ba09b462567, https://usegalaxy.eu/published/workflow?id=ade6f36f6a035a73, https://usegalaxy.eu/published/workflow?id=adf5e8bead686341, https://usegalaxy.eu/published/workflow?id=ae16643c04ad1216, https://usegalaxy.eu/published/workflow?id=ae74f60cd20d56bc, https://usegalaxy.eu/published/workflow?id=ae79275d3568ad31, https://usegalaxy.eu/published/workflow?id=aef62f4d0bba003b, https://usegalaxy.eu/published/workflow?id=af472984b3f3d65f, https://usegalaxy.eu/published/workflow?id=afad9a17a80bb26d, https://usegalaxy.eu/published/workflow?id=b06f5729d6d68794, https://usegalaxy.eu/published/workflow?id=b211fceaecf41c9e, https://usegalaxy.eu/published/workflow?id=b287bb779cf686ef, https://usegalaxy.eu/published/workflow?id=b4948afacccfefdb, https://usegalaxy.eu/published/workflow?id=b51559006f86db9e, https://usegalaxy.eu/published/workflow?id=b57c3522bdd7c2d5, https://usegalaxy.eu/published/workflow?id=b5de94e9cde071ab, https://usegalaxy.eu/published/workflow?id=b5f848dc8e96663c, https://usegalaxy.eu/published/workflow?id=b6457cb04bf31613, https://usegalaxy.eu/published/workflow?id=b6bb29169160a713, https://usegalaxy.eu/published/workflow?id=b73fa5f8c0403454, https://usegalaxy.eu/published/workflow?id=b77e3b08092fa73e, https://usegalaxy.eu/published/workflow?id=b7a3cbcd32734e8b, https://usegalaxy.eu/published/workflow?id=b86f3775aa1f13bc, https://usegalaxy.eu/published/workflow?id=b89cf3cb6a25c999, https://usegalaxy.eu/published/workflow?id=b8baade87e733fce, https://usegalaxy.eu/published/workflow?id=b8fc492025ad6ff0, https://usegalaxy.eu/published/workflow?id=ba3a5d59b3879764, https://usegalaxy.eu/published/workflow?id=bac84a7033c3423f, https://usegalaxy.eu/published/workflow?id=bc87309a8763d0b4, https://usegalaxy.eu/published/workflow?id=bc8ccd13a07bd9ec, https://usegalaxy.eu/published/workflow?id=bcf99cc0469db276, https://usegalaxy.eu/published/workflow?id=bef0a7d604f2ebef, https://usegalaxy.eu/published/workflow?id=bfe26679d670bb5e, https://usegalaxy.eu/published/workflow?id=c02ff9e97ce796c6, https://usegalaxy.eu/published/workflow?id=c4119ea7ffd29094, https://usegalaxy.eu/published/workflow?id=c4c2e669b86cffbc, https://usegalaxy.eu/published/workflow?id=c508c00e81018dd8, https://usegalaxy.eu/published/workflow?id=c52e8b5ab3e8e958, https://usegalaxy.eu/published/workflow?id=c5e6047b3b256b06, https://usegalaxy.eu/published/workflow?id=c6adc3b665828a6f, https://usegalaxy.eu/published/workflow?id=c76dccb40059001b, https://usegalaxy.eu/published/workflow?id=c789ab71876c6ead, https://usegalaxy.eu/published/workflow?id=c832ecfa83bcda14, https://usegalaxy.eu/published/workflow?id=c8bc4af6dd3b5d02, https://usegalaxy.eu/published/workflow?id=c8f94a2e838fc0f1, https://usegalaxy.eu/published/workflow?id=c917db7d7ba7ea6f, https://usegalaxy.eu/published/workflow?id=c94a1d028357c81e, https://usegalaxy.eu/published/workflow?id=c9f83ce86d407902, https://usegalaxy.eu/published/workflow?id=ca286c2fdc71e960, https://usegalaxy.eu/published/workflow?id=ca342c5018c210e7, https://usegalaxy.eu/published/workflow?id=ca39822372847670, https://usegalaxy.eu/published/workflow?id=cab2aa791a814d55, https://usegalaxy.eu/published/workflow?id=caba6d3d7db648e9, https://usegalaxy.eu/published/workflow?id=cb978151b1686b71, https://usegalaxy.eu/published/workflow?id=cc385bd4376a907c, https://usegalaxy.eu/published/workflow?id=cc483bb070e57474, https://usegalaxy.eu/published/workflow?id=ccef778cfd9024d1, https://usegalaxy.eu/published/workflow?id=cd25f70f71683ab6, https://usegalaxy.eu/published/workflow?id=cd675ab32d3e7833, https://usegalaxy.eu/published/workflow?id=cdf2f02428f5f83f, https://usegalaxy.eu/published/workflow?id=ce1712139b4a4273, https://usegalaxy.eu/published/workflow?id=cf0159c14418525e, https://usegalaxy.eu/published/workflow?id=d02458f1d7d9c3f4, https://usegalaxy.eu/published/workflow?id=d0ae255151450dad, https://usegalaxy.eu/published/workflow?id=d0e062aee910086a, https://usegalaxy.eu/published/workflow?id=d172f927a489e9f8, https://usegalaxy.eu/published/workflow?id=d17d6029914d666b, https://usegalaxy.eu/published/workflow?id=d1a1e6070c0a36ca, https://usegalaxy.eu/published/workflow?id=d1bd5d8597c1d31d, https://usegalaxy.eu/published/workflow?id=d1d5a6bd6571d47f, https://usegalaxy.eu/published/workflow?id=d215a2e554fd83bc, https://usegalaxy.eu/published/workflow?id=d22dac11eba8c5a3, https://usegalaxy.eu/published/workflow?id=d261bbd05889ce75, https://usegalaxy.eu/published/workflow?id=d2a9d4eb5b3c72a2, https://usegalaxy.eu/published/workflow?id=d3a8741131485af2, https://usegalaxy.eu/published/workflow?id=d5756e3ebfa285ef, https://usegalaxy.eu/published/workflow?id=d649ec485c4b3994, https://usegalaxy.eu/published/workflow?id=d773cbc76253afbf, https://usegalaxy.eu/published/workflow?id=d789165f4e0c50eb, https://usegalaxy.eu/published/workflow?id=d87fc6685e47d27d, https://usegalaxy.eu/published/workflow?id=d924fafd8e042952, https://usegalaxy.eu/published/workflow?id=d95a3349f38792fc, https://usegalaxy.eu/published/workflow?id=db03a18167f26399, https://usegalaxy.eu/published/workflow?id=dc27453c438577f6, https://usegalaxy.eu/published/workflow?id=dd73bdcbac8649a3, https://usegalaxy.eu/published/workflow?id=dd8b55e7768843b1, https://usegalaxy.eu/published/workflow?id=de9cf573314f416c, https://usegalaxy.eu/published/workflow?id=df08e520ec3dbcb7, https://usegalaxy.eu/published/workflow?id=df455b86fff16116, https://usegalaxy.eu/published/workflow?id=dfee2bd4e4600ad9, https://usegalaxy.eu/published/workflow?id=e06934a35fc18f2c, https://usegalaxy.eu/published/workflow?id=e0dddc2579c3614e, https://usegalaxy.eu/published/workflow?id=e138640778b7414c, https://usegalaxy.eu/published/workflow?id=e271d95a671182ec, https://usegalaxy.eu/published/workflow?id=e4dabaf57668dbd1, https://usegalaxy.eu/published/workflow?id=e4e969e9943cdaa5, https://usegalaxy.eu/published/workflow?id=e7aebe58411d97ed, https://usegalaxy.eu/published/workflow?id=e7e26967cf6cb8d8, https://usegalaxy.eu/published/workflow?id=e8a8c0b59ba9d593, https://usegalaxy.eu/published/workflow?id=e8f9e1d911683b22, https://usegalaxy.eu/published/workflow?id=e935d2c8ffb52588, https://usegalaxy.eu/published/workflow?id=ea3b120f105434ec, https://usegalaxy.eu/published/workflow?id=ea485dbabc76488d, https://usegalaxy.eu/published/workflow?id=ea8bb8eefdb4ba7a, https://usegalaxy.eu/published/workflow?id=eb03839cc36048f5, https://usegalaxy.eu/published/workflow?id=eb54512829d8509c, https://usegalaxy.eu/published/workflow?id=ec6b2c926fffab5f, https://usegalaxy.eu/published/workflow?id=ec79f14ab91cd933, https://usegalaxy.eu/published/workflow?id=ecf48fa50af560a0, https://usegalaxy.eu/published/workflow?id=edea08c943ff9c5e, https://usegalaxy.eu/published/workflow?id=f08b29e4cef76cd5, https://usegalaxy.eu/published/workflow?id=f0bec337f9998289, https://usegalaxy.eu/published/workflow?id=f1ca4289ee4f67bb, https://usegalaxy.eu/published/workflow?id=f28459c5b16549b7, https://usegalaxy.eu/published/workflow?id=f38745208494d4ab, https://usegalaxy.eu/published/workflow?id=f3e17c8dd80def27, https://usegalaxy.eu/published/workflow?id=f4a55ef0d4c2cd97, https://usegalaxy.eu/published/workflow?id=f578a097b4339025, https://usegalaxy.eu/published/workflow?id=f58526da1fd68108, https://usegalaxy.eu/published/workflow?id=f63127675a07e00a, https://usegalaxy.eu/published/workflow?id=f689faf267fbe504, https://usegalaxy.eu/published/workflow?id=f6a625946dea60fa, https://usegalaxy.eu/published/workflow?id=f6a763951d815944, https://usegalaxy.eu/published/workflow?id=f6bd10486a0ba17d, https://usegalaxy.eu/published/workflow?id=f78e16c669481efd, https://usegalaxy.eu/published/workflow?id=f7a7c72489d6b3d4, https://usegalaxy.eu/published/workflow?id=f7cdaf862e6599c0, https://usegalaxy.eu/published/workflow?id=f882d14fc5dabbb9, https://usegalaxy.eu/published/workflow?id=f91245e580319e65, https://usegalaxy.eu/published/workflow?id=f9b705e53b6d6539, https://usegalaxy.eu/published/workflow?id=fa83e26e05418370, https://usegalaxy.eu/published/workflow?id=fb015e398373ea8a, https://usegalaxy.eu/published/workflow?id=fba1671d835b6dd3, https://usegalaxy.eu/published/workflow?id=fc0b9efa7d2e61e6, https://usegalaxy.eu/published/workflow?id=fc25c1f8c6667c87, https://usegalaxy.eu/published/workflow?id=fc42cc9467c6ee8d, https://usegalaxy.eu/published/workflow?id=fd649ac4d4872c81, https://usegalaxy.eu/published/workflow?id=fdca6c9d394986bf, https://usegalaxy.eu/published/workflow?id=fde21b5f5c169114, https://usegalaxy.eu/published/workflow?id=fe64d430d50faf0b, https://usegalaxy.eu/published/workflow?id=fed55dc53c5325ff, https://usegalaxy.eu/published/workflow?id=feeb1fa358ccf328, https://usegalaxy.eu/published/workflow?id=ff2fd4a4bb27d859, https://usegalaxy.fr/published/workflow?id=09e8293456ee6d99, https://usegalaxy.fr/published/workflow?id=0df61a88d64de252, https://usegalaxy.fr/published/workflow?id=1ad87b99f0cb828c, https://usegalaxy.fr/published/workflow?id=5083dccc00274ac1, https://usegalaxy.fr/published/workflow?id=798c8ff19825ab2c, https://usegalaxy.fr/published/workflow?id=7c0a90d4e53bca51, https://usegalaxy.fr/published/workflow?id=a3e9062133fdf7c2, https://usegalaxy.fr/published/workflow?id=b168a179d1b456cb, https://usegalaxy.fr/published/workflow?id=bf8ffe72b7ce4570, https://usegalaxy.fr/published/workflow?id=c4f6062e51d0f45e, https://usegalaxy.fr/published/workflow?id=c7be6e229a045fad, https://usegalaxy.org.au/published/workflow?id=000c2f1884bc4687, https://usegalaxy.org.au/published/workflow?id=02eebe3d909206ab, https://usegalaxy.org.au/published/workflow?id=02f2a556e77eed14, https://usegalaxy.org.au/published/workflow?id=04ab43fb3e7840ef, https://usegalaxy.org.au/published/workflow?id=04c9266c6a863fab, https://usegalaxy.org.au/published/workflow?id=053c054592b08dce, https://usegalaxy.org.au/published/workflow?id=06564b19b0655c19, https://usegalaxy.org.au/published/workflow?id=0810be3d7d2b0322, https://usegalaxy.org.au/published/workflow?id=08fac3b4c128e597, https://usegalaxy.org.au/published/workflow?id=0aa316f8c6cff444, https://usegalaxy.org.au/published/workflow?id=0af0ea50f1237952, https://usegalaxy.org.au/published/workflow?id=0b0957d7cbab16c0, https://usegalaxy.org.au/published/workflow?id=0c11e1ba5e8fa21b, https://usegalaxy.org.au/published/workflow?id=0cc8c8875df6bccb, https://usegalaxy.org.au/published/workflow?id=0dbb85f727302a72, https://usegalaxy.org.au/published/workflow?id=0df25e2dbd5e8ed5, https://usegalaxy.org.au/published/workflow?id=0e11619979c2830c, https://usegalaxy.org.au/published/workflow?id=0edb9c8b767fa74b, https://usegalaxy.org.au/published/workflow?id=0f9a29e8eac2075c, https://usegalaxy.org.au/published/workflow?id=10355b2680374a03, https://usegalaxy.org.au/published/workflow?id=11f1564f2bd815d8, https://usegalaxy.org.au/published/workflow?id=14e80b7f9f68ec2a, https://usegalaxy.org.au/published/workflow?id=16c6c253e009cc0d, https://usegalaxy.org.au/published/workflow?id=1727d16fa4dec19c, https://usegalaxy.org.au/published/workflow?id=1764bb1f506212e8, https://usegalaxy.org.au/published/workflow?id=1782d699b0166725, https://usegalaxy.org.au/published/workflow?id=1905ec04d5841f09, https://usegalaxy.org.au/published/workflow?id=1ce2a725df3adb74, https://usegalaxy.org.au/published/workflow?id=1d1c2589f94fc4df, https://usegalaxy.org.au/published/workflow?id=1dcc1b25c9091fbf, https://usegalaxy.org.au/published/workflow?id=1eb3e1452c672480, https://usegalaxy.org.au/published/workflow?id=1f49c65625b9d2de, https://usegalaxy.org.au/published/workflow?id=20d472fc5563a640, https://usegalaxy.org.au/published/workflow?id=218ffb4438833bdd, https://usegalaxy.org.au/published/workflow?id=2356584eac7fa234, https://usegalaxy.org.au/published/workflow?id=2362ff8880213586, https://usegalaxy.org.au/published/workflow?id=244ea5e94237ebad, https://usegalaxy.org.au/published/workflow?id=2470cb61ba51288c, https://usegalaxy.org.au/published/workflow?id=25d52afddaa3451b, https://usegalaxy.org.au/published/workflow?id=28705b86e0595ded, https://usegalaxy.org.au/published/workflow?id=2955ea7be1cdda29, https://usegalaxy.org.au/published/workflow?id=2cef9a1633e0a067, https://usegalaxy.org.au/published/workflow?id=2d45d7138d8715b4, https://usegalaxy.org.au/published/workflow?id=2df1d32f78974528, https://usegalaxy.org.au/published/workflow?id=2fee25e188531691, https://usegalaxy.org.au/published/workflow?id=319e9d693fac8dce, https://usegalaxy.org.au/published/workflow?id=328adfa7d90b1d54, https://usegalaxy.org.au/published/workflow?id=3604307ec2835628, https://usegalaxy.org.au/published/workflow?id=36f54eda8568355d, https://usegalaxy.org.au/published/workflow?id=371c9892d261cee2, https://usegalaxy.org.au/published/workflow?id=3b6e9f03b088bf01, https://usegalaxy.org.au/published/workflow?id=3df7f45b7b388f8c, https://usegalaxy.org.au/published/workflow?id=3e6f755ee62f7301, https://usegalaxy.org.au/published/workflow?id=4047f9f242542716, https://usegalaxy.org.au/published/workflow?id=40666ceb68d101ac, https://usegalaxy.org.au/published/workflow?id=40740c32b9a550c9, https://usegalaxy.org.au/published/workflow?id=41282d51f9112552, https://usegalaxy.org.au/published/workflow?id=41795303a88d9e94, https://usegalaxy.org.au/published/workflow?id=42305ed876d19d08, https://usegalaxy.org.au/published/workflow?id=4267bd1e4cfd1901, https://usegalaxy.org.au/published/workflow?id=43a951ec514498f6, https://usegalaxy.org.au/published/workflow?id=446ba22c3d2f3367, https://usegalaxy.org.au/published/workflow?id=455e68f185fec41b, https://usegalaxy.org.au/published/workflow?id=462beb964c99619d, https://usegalaxy.org.au/published/workflow?id=466809eb3392f7fb, https://usegalaxy.org.au/published/workflow?id=470eb26144325590, https://usegalaxy.org.au/published/workflow?id=499245b3a113e06d, https://usegalaxy.org.au/published/workflow?id=4b681937a01df465, https://usegalaxy.org.au/published/workflow?id=4cb69c84b73ea9dd, https://usegalaxy.org.au/published/workflow?id=4e7930c7286c6e9e, https://usegalaxy.org.au/published/workflow?id=4ea1049371de111c, https://usegalaxy.org.au/published/workflow?id=4ebf1297793870e7, https://usegalaxy.org.au/published/workflow?id=4f837b7f90d5ebac, https://usegalaxy.org.au/published/workflow?id=518d27f68e05a356, https://usegalaxy.org.au/published/workflow?id=51bad198f1fd1215, https://usegalaxy.org.au/published/workflow?id=543fb2d9431a7e13, https://usegalaxy.org.au/published/workflow?id=5490661d0153962b, https://usegalaxy.org.au/published/workflow?id=5550585ffc3d8d0e, https://usegalaxy.org.au/published/workflow?id=59e8d2bbbae020b1, https://usegalaxy.org.au/published/workflow?id=5a975438c8752269, https://usegalaxy.org.au/published/workflow?id=5b0c0e34394afed1, https://usegalaxy.org.au/published/workflow?id=5cd7f1824db7a960, https://usegalaxy.org.au/published/workflow?id=5cd804644a34c8fd, https://usegalaxy.org.au/published/workflow?id=5cfea39918e8632d, https://usegalaxy.org.au/published/workflow?id=5f4f874e49515555, https://usegalaxy.org.au/published/workflow?id=60c0dec52cdca708, https://usegalaxy.org.au/published/workflow?id=63789b6f82172679, https://usegalaxy.org.au/published/workflow?id=66e530368fd40abd, https://usegalaxy.org.au/published/workflow?id=68b2961117e62890, https://usegalaxy.org.au/published/workflow?id=69d91340fc7effa2, https://usegalaxy.org.au/published/workflow?id=6a161c87d19a543c, https://usegalaxy.org.au/published/workflow?id=6b1b0a945d367b4c, https://usegalaxy.org.au/published/workflow?id=6b7e565258a9da2a, https://usegalaxy.org.au/published/workflow?id=6c1c11a81a2ab1b8, https://usegalaxy.org.au/published/workflow?id=6c27019d03dd49d8, https://usegalaxy.org.au/published/workflow?id=6c9129acb9d98afe, https://usegalaxy.org.au/published/workflow?id=6de8899c40a90b98, https://usegalaxy.org.au/published/workflow?id=6e1e24f9e0326930, https://usegalaxy.org.au/published/workflow?id=6ec5728eec9c26d7, https://usegalaxy.org.au/published/workflow?id=6f76c43e6d2d7f74, https://usegalaxy.org.au/published/workflow?id=7028436ef03171cc, https://usegalaxy.org.au/published/workflow?id=7168c01be9997823, https://usegalaxy.org.au/published/workflow?id=71bad95f72c9f30d, https://usegalaxy.org.au/published/workflow?id=73565f6cb4136370, https://usegalaxy.org.au/published/workflow?id=75113a1b41904d2a, https://usegalaxy.org.au/published/workflow?id=76a0a3af8de11622, https://usegalaxy.org.au/published/workflow?id=76bb6bde19975e05, https://usegalaxy.org.au/published/workflow?id=77b2fcf8c805ad5d, https://usegalaxy.org.au/published/workflow?id=781457327e644c7e, https://usegalaxy.org.au/published/workflow?id=7909da83448d8bf4, https://usegalaxy.org.au/published/workflow?id=79bf7b0f5e9052d7, https://usegalaxy.org.au/published/workflow?id=79ca45e45d76871f, https://usegalaxy.org.au/published/workflow?id=7a0b3968968c5994, https://usegalaxy.org.au/published/workflow?id=7a97e8ccc332c1e8, https://usegalaxy.org.au/published/workflow?id=7cc2b5010c56f117, https://usegalaxy.org.au/published/workflow?id=7ef245f5ae3b916d, https://usegalaxy.org.au/published/workflow?id=800d28ec61b15244, https://usegalaxy.org.au/published/workflow?id=8034bd0690b4cbe8, https://usegalaxy.org.au/published/workflow?id=8055596d732590d6, https://usegalaxy.org.au/published/workflow?id=81a5b96452c71a52, https://usegalaxy.org.au/published/workflow?id=82d0876385b5ac60, https://usegalaxy.org.au/published/workflow?id=832a30759469d3fe, https://usegalaxy.org.au/published/workflow?id=83441e3de699d157, https://usegalaxy.org.au/published/workflow?id=84a8eb379440656e, https://usegalaxy.org.au/published/workflow?id=857e482acfcb2dba, https://usegalaxy.org.au/published/workflow?id=85aede91db0122e4, https://usegalaxy.org.au/published/workflow?id=868775ef66d174a5, https://usegalaxy.org.au/published/workflow?id=869440d35a618836, https://usegalaxy.org.au/published/workflow?id=86eb0ea9dc230f04, https://usegalaxy.org.au/published/workflow?id=87bbf9408b3f2a32, https://usegalaxy.org.au/published/workflow?id=8926e592f2e60863, https://usegalaxy.org.au/published/workflow?id=897a1255cef5c310, https://usegalaxy.org.au/published/workflow?id=8a6233015db6dd24, https://usegalaxy.org.au/published/workflow?id=8b5897305dcaf076, https://usegalaxy.org.au/published/workflow?id=8bf8c9929249f37d, https://usegalaxy.org.au/published/workflow?id=8dd86497bc15d981, https://usegalaxy.org.au/published/workflow?id=8e2b94c6fbf44368, https://usegalaxy.org.au/published/workflow?id=8e8a5cce9f3f2f67, https://usegalaxy.org.au/published/workflow?id=8eab5e2b2c683076, https://usegalaxy.org.au/published/workflow?id=8fb691706f47527a, https://usegalaxy.org.au/published/workflow?id=9016b2be61f89053, https://usegalaxy.org.au/published/workflow?id=91ee716be8bfd508, https://usegalaxy.org.au/published/workflow?id=9281258aefd17c0c, https://usegalaxy.org.au/published/workflow?id=92fcdd490831c6c5, https://usegalaxy.org.au/published/workflow?id=9642aadb83c4f752, https://usegalaxy.org.au/published/workflow?id=970dc0d8bd74707f, https://usegalaxy.org.au/published/workflow?id=9804030358c3f844, https://usegalaxy.org.au/published/workflow?id=989eb73372135796, https://usegalaxy.org.au/published/workflow?id=98d3def7da131b4c, https://usegalaxy.org.au/published/workflow?id=98f660971010d11d, https://usegalaxy.org.au/published/workflow?id=9e0bae0505ee7c07, https://usegalaxy.org.au/published/workflow?id=9f112e39bd3bd746, https://usegalaxy.org.au/published/workflow?id=9f6e62f465589ca3, https://usegalaxy.org.au/published/workflow?id=a02c102e179596cb, https://usegalaxy.org.au/published/workflow?id=a1015b83baa0eb6d, https://usegalaxy.org.au/published/workflow?id=a209f43d8a3cc853, https://usegalaxy.org.au/published/workflow?id=a335b9c9103b57ad, https://usegalaxy.org.au/published/workflow?id=a345bf84eb9bf6b2, https://usegalaxy.org.au/published/workflow?id=a40dadc943a0db1e, https://usegalaxy.org.au/published/workflow?id=a525966251895f8a, https://usegalaxy.org.au/published/workflow?id=a740543c4e9808f1, https://usegalaxy.org.au/published/workflow?id=a77ce877e786d44a, https://usegalaxy.org.au/published/workflow?id=a9e59d38c6c710bc, https://usegalaxy.org.au/published/workflow?id=ac8bdc5a0b2d70cd, https://usegalaxy.org.au/published/workflow?id=ad10cd704268dcf0, https://usegalaxy.org.au/published/workflow?id=ae2a397837b232b1, https://usegalaxy.org.au/published/workflow?id=ae6a03240680712a, https://usegalaxy.org.au/published/workflow?id=ae773dfaa074cb72, https://usegalaxy.org.au/published/workflow?id=afab89bc468da8b3, https://usegalaxy.org.au/published/workflow?id=b0a79310e0dc3fb4, https://usegalaxy.org.au/published/workflow?id=b19fa49405117317, https://usegalaxy.org.au/published/workflow?id=b1f45d2f8d8343e9, https://usegalaxy.org.au/published/workflow?id=b310af289ada88bc, https://usegalaxy.org.au/published/workflow?id=b432a1312859edd2, https://usegalaxy.org.au/published/workflow?id=b5131e3a0ef2676e, https://usegalaxy.org.au/published/workflow?id=b53f82aaf32fbaa9, https://usegalaxy.org.au/published/workflow?id=b601f48ecec15bf4, https://usegalaxy.org.au/published/workflow?id=b60922a253df6654, https://usegalaxy.org.au/published/workflow?id=b808cd1c0090b068, https://usegalaxy.org.au/published/workflow?id=b920b02a23f94d11, https://usegalaxy.org.au/published/workflow?id=b9e82e3fae56d8b4, https://usegalaxy.org.au/published/workflow?id=b9e89401313a0cca, https://usegalaxy.org.au/published/workflow?id=b9faf6a3f48fc11b, https://usegalaxy.org.au/published/workflow?id=ba217a34d7e1b5ee, https://usegalaxy.org.au/published/workflow?id=bcb0be4f4a0e369f, https://usegalaxy.org.au/published/workflow?id=be35847680078c90, https://usegalaxy.org.au/published/workflow?id=be96bb47b6d6435a, https://usegalaxy.org.au/published/workflow?id=c556c2270200801d, https://usegalaxy.org.au/published/workflow?id=c622bd03677314aa, https://usegalaxy.org.au/published/workflow?id=c6a71573a299eb3a, https://usegalaxy.org.au/published/workflow?id=c7e1f666a3366823, https://usegalaxy.org.au/published/workflow?id=c7f2d6490128dc3c, https://usegalaxy.org.au/published/workflow?id=c853aa707fcddf4e, https://usegalaxy.org.au/published/workflow?id=c92fead7c30c7497, https://usegalaxy.org.au/published/workflow?id=cac0b8a09d59044b, https://usegalaxy.org.au/published/workflow?id=cbf022e349d726d9, https://usegalaxy.org.au/published/workflow?id=cf775b8ff0745456, https://usegalaxy.org.au/published/workflow?id=d0d6743450e5060d, https://usegalaxy.org.au/published/workflow?id=d298edda13b382e7, https://usegalaxy.org.au/published/workflow?id=d42d7b1aa47e870f, https://usegalaxy.org.au/published/workflow?id=d62b6717202f42c9, https://usegalaxy.org.au/published/workflow?id=d7f3fc810261e419, https://usegalaxy.org.au/published/workflow?id=d83d5ecf31c20490, https://usegalaxy.org.au/published/workflow?id=d9c181fd954b629a, https://usegalaxy.org.au/published/workflow?id=df4e186069552649, https://usegalaxy.org.au/published/workflow?id=e031af90daa2cadf, https://usegalaxy.org.au/published/workflow?id=e154a9b605ea0886, https://usegalaxy.org.au/published/workflow?id=e1fd89e7248b6661, https://usegalaxy.org.au/published/workflow?id=e28ca83f14f4ede5, https://usegalaxy.org.au/published/workflow?id=e4ddf33ee5b5e259, https://usegalaxy.org.au/published/workflow?id=e6552643a3713b50, https://usegalaxy.org.au/published/workflow?id=ea687c5613fcce27, https://usegalaxy.org.au/published/workflow?id=ea98be0f99aaceb9, https://usegalaxy.org.au/published/workflow?id=ebd1ee73906fdea0, https://usegalaxy.org.au/published/workflow?id=ebf88e79c4f094ba, https://usegalaxy.org.au/published/workflow?id=ecfb8a08e5a40e15, https://usegalaxy.org.au/published/workflow?id=eda40b58616a0fe4, https://usegalaxy.org.au/published/workflow?id=f06370394b061e08, https://usegalaxy.org.au/published/workflow?id=f53d8ade897b3f46, https://usegalaxy.org.au/published/workflow?id=f7a866159f1eaecf, https://usegalaxy.org.au/published/workflow?id=f7fd24318c4bf949, https://usegalaxy.org.au/published/workflow?id=f895914e322c8b77, https://usegalaxy.org.au/published/workflow?id=fa37223950a91f34, https://usegalaxy.org.au/published/workflow?id=fbc732db2a2821b0, https://usegalaxy.org.au/published/workflow?id=fdec6e2fcd5e2cf5, https://usegalaxy.org.au/published/workflow?id=fe1e7fa0bc437ed8, https://usegalaxy.org.au/published/workflow?id=fea0e6c02c2f6274, https://usegalaxy.org.au/published/workflow?id=fff2e49bc90e38ca, https://usegalaxy.org/published/workflow?id=00a4dbc9329c638b, https://usegalaxy.org/published/workflow?id=019be65613876562, https://usegalaxy.org/published/workflow?id=0360984110693d9f, https://usegalaxy.org/published/workflow?id=03744158aa2c4149, https://usegalaxy.org/published/workflow?id=0392de36b6f55a8f, https://usegalaxy.org/published/workflow?id=05ef809e2b11154c, https://usegalaxy.org/published/workflow?id=07739fbbd53755f6, https://usegalaxy.org/published/workflow?id=0775d8efad0dac10, https://usegalaxy.org/published/workflow?id=07e761b2501971c6, https://usegalaxy.org/published/workflow?id=07e873a6d75dfe9f, https://usegalaxy.org/published/workflow?id=07fdeadce7a6d5cb, https://usegalaxy.org/published/workflow?id=0843c6f15eae2f15, https://usegalaxy.org/published/workflow?id=08ca80ae36c8c576, https://usegalaxy.org/published/workflow?id=098375608a1223aa, https://usegalaxy.org/published/workflow?id=0993daadf2db5f51, https://usegalaxy.org/published/workflow?id=0b85fb10ed25d34e, https://usegalaxy.org/published/workflow?id=0dec1b9dbbb2f425, https://usegalaxy.org/published/workflow?id=10d5e195501603bc, https://usegalaxy.org/published/workflow?id=11dac9cba49be089, https://usegalaxy.org/published/workflow?id=1245e9435cbc3985, https://usegalaxy.org/published/workflow?id=137d0f05a71d7acb, https://usegalaxy.org/published/workflow?id=138311394c077827, https://usegalaxy.org/published/workflow?id=1388fe5d8b50bc7c, https://usegalaxy.org/published/workflow?id=13d9db3715f32b37, https://usegalaxy.org/published/workflow?id=1473cdcbd664d147, https://usegalaxy.org/published/workflow?id=14f62361a15f8a24, https://usegalaxy.org/published/workflow?id=1518c8c50747a1c1, https://usegalaxy.org/published/workflow?id=155839aeb6340f54, https://usegalaxy.org/published/workflow?id=16910402667eec78, https://usegalaxy.org/published/workflow?id=170287dcfb9de475, https://usegalaxy.org/published/workflow?id=183254b3565bcb04, https://usegalaxy.org/published/workflow?id=19ce6cf93298e268, https://usegalaxy.org/published/workflow?id=19fcce20ecaf2ef6, https://usegalaxy.org/published/workflow?id=1a6f552cfe798883, https://usegalaxy.org/published/workflow?id=1b434bfc3aac0022, https://usegalaxy.org/published/workflow?id=1b80302437db5937, https://usegalaxy.org/published/workflow?id=1c5a7196a442dd02, https://usegalaxy.org/published/workflow?id=1d24cc949c52e475, https://usegalaxy.org/published/workflow?id=1d923ce15c17b1fe, https://usegalaxy.org/published/workflow?id=1e264fc06d87899f, https://usegalaxy.org/published/workflow?id=1ea88ca80a7f0038, https://usegalaxy.org/published/workflow?id=1eec2586d1ff908b, https://usegalaxy.org/published/workflow?id=1f98df1adba71b98, https://usegalaxy.org/published/workflow?id=1fe6b25825d9b736, https://usegalaxy.org/published/workflow?id=204d0da8a023d7da, https://usegalaxy.org/published/workflow?id=226b506d1fc30e96, https://usegalaxy.org/published/workflow?id=228ae7f537a60226, https://usegalaxy.org/published/workflow?id=23212ae74fc2d2b5, https://usegalaxy.org/published/workflow?id=23468eea382e6bb4, https://usegalaxy.org/published/workflow?id=237ca9f36ca266e7, https://usegalaxy.org/published/workflow?id=23bca854e549ad48, https://usegalaxy.org/published/workflow?id=23eeee48217654d4, https://usegalaxy.org/published/workflow?id=2404d5e5b1817825, https://usegalaxy.org/published/workflow?id=242ef2e9dee35702, https://usegalaxy.org/published/workflow?id=25a9f0693ff6d327, https://usegalaxy.org/published/workflow?id=25b8b5af30042d76, https://usegalaxy.org/published/workflow?id=25cdc47baba556c5, https://usegalaxy.org/published/workflow?id=26d2c2d51d6a7158, https://usegalaxy.org/published/workflow?id=2823322fa85c7ae1, https://usegalaxy.org/published/workflow?id=283bc048cc7a80f5, https://usegalaxy.org/published/workflow?id=284150bb1f296378, https://usegalaxy.org/published/workflow?id=28b2550248a54d74, https://usegalaxy.org/published/workflow?id=28dbbfb3d480f4b1, https://usegalaxy.org/published/workflow?id=28ddea356ae57da1, https://usegalaxy.org/published/workflow?id=28e86ab943c67417, https://usegalaxy.org/published/workflow?id=2967ef82911f2cca, https://usegalaxy.org/published/workflow?id=29ba77708cdafe0f, https://usegalaxy.org/published/workflow?id=2a4823c060dd216e, https://usegalaxy.org/published/workflow?id=2b09f3c9465ee054, https://usegalaxy.org/published/workflow?id=2b41752b8518a87b, https://usegalaxy.org/published/workflow?id=2b6245843e632c05, https://usegalaxy.org/published/workflow?id=2b820beaeb49dd64, https://usegalaxy.org/published/workflow?id=2c5c627c08563398, https://usegalaxy.org/published/workflow?id=2d1d69aac67a387a, https://usegalaxy.org/published/workflow?id=2d3063882d8239ff, https://usegalaxy.org/published/workflow?id=2d64e09025ae8ed4, https://usegalaxy.org/published/workflow?id=2d994cc02ec05ede, https://usegalaxy.org/published/workflow?id=2dceaa255cc8cf83, https://usegalaxy.org/published/workflow?id=2de32c02c22b6d98, https://usegalaxy.org/published/workflow?id=2e92cca68b7979f6, https://usegalaxy.org/published/workflow?id=2f1469dab87a3649, https://usegalaxy.org/published/workflow?id=30507545aa971637, https://usegalaxy.org/published/workflow?id=305eafecadfa8815, https://usegalaxy.org/published/workflow?id=305fb9f84b053713, https://usegalaxy.org/published/workflow?id=31186e478383465b, https://usegalaxy.org/published/workflow?id=3179c157fa5a2fdd, https://usegalaxy.org/published/workflow?id=31a6145b0832fa48, https://usegalaxy.org/published/workflow?id=31dea5361ec9421c, https://usegalaxy.org/published/workflow?id=31e73cdaa0fb70c3, https://usegalaxy.org/published/workflow?id=31ed5a2bcc8da51a, https://usegalaxy.org/published/workflow?id=325783f21bc5fef6, https://usegalaxy.org/published/workflow?id=349f1bcdbc84045f, https://usegalaxy.org/published/workflow?id=3511da8b41b1fb5d, https://usegalaxy.org/published/workflow?id=357225c624e796b5, https://usegalaxy.org/published/workflow?id=36a92f1f6d2212a4, https://usegalaxy.org/published/workflow?id=36c885b0bc829da3, https://usegalaxy.org/published/workflow?id=371273ba52f1f5dc, https://usegalaxy.org/published/workflow?id=3753dcca4100e976, https://usegalaxy.org/published/workflow?id=375f5142c207a768, https://usegalaxy.org/published/workflow?id=386d3b300cf05305, https://usegalaxy.org/published/workflow?id=38911ba6f66d80f6, https://usegalaxy.org/published/workflow?id=3a172bd71ea15178, https://usegalaxy.org/published/workflow?id=3ba73f679558017c, https://usegalaxy.org/published/workflow?id=3c1e2bbb1a77cc30, https://usegalaxy.org/published/workflow?id=3d7a9694bcee6db5, https://usegalaxy.org/published/workflow?id=3d805d7e0f34c727, https://usegalaxy.org/published/workflow?id=3db4eb1ecb588d44, https://usegalaxy.org/published/workflow?id=3db51822f04f4ff7, https://usegalaxy.org/published/workflow?id=3e703abaeb870f6f, https://usegalaxy.org/published/workflow?id=3edea70fbdb9dbd9, https://usegalaxy.org/published/workflow?id=3ef08553982f6ffc, https://usegalaxy.org/published/workflow?id=3f7550d5d2bf0b96, https://usegalaxy.org/published/workflow?id=3fdd7a7907233d58, https://usegalaxy.org/published/workflow?id=405dc14eb02ff234, https://usegalaxy.org/published/workflow?id=4061e061f659449b, https://usegalaxy.org/published/workflow?id=408c799822cbf6ea, https://usegalaxy.org/published/workflow?id=40a65b5bc1dcc0b4, https://usegalaxy.org/published/workflow?id=412da1489d6aed45, https://usegalaxy.org/published/workflow?id=420a332da24fb9e9, https://usegalaxy.org/published/workflow?id=42331381df05b956, https://usegalaxy.org/published/workflow?id=426358bd988cb39d, https://usegalaxy.org/published/workflow?id=4266aa248d5b1ea4, https://usegalaxy.org/published/workflow?id=427fce51fd9508eb, https://usegalaxy.org/published/workflow?id=4339d5625c15ae78, https://usegalaxy.org/published/workflow?id=435f0340bf00c940, https://usegalaxy.org/published/workflow?id=438761debd08a9be, https://usegalaxy.org/published/workflow?id=442a2868873e7f77, https://usegalaxy.org/published/workflow?id=44781c8b0bd667ed, https://usegalaxy.org/published/workflow?id=44bcae0e352563f9, https://usegalaxy.org/published/workflow?id=450c2181f89e6b23, https://usegalaxy.org/published/workflow?id=45c0b677c4920d03, https://usegalaxy.org/published/workflow?id=46207bf9ce5ee26a, https://usegalaxy.org/published/workflow?id=462a1176b48eef4a, https://usegalaxy.org/published/workflow?id=4680511d4daad5d7, https://usegalaxy.org/published/workflow?id=46894456a9bec601, https://usegalaxy.org/published/workflow?id=468c5a8fe7a40778, https://usegalaxy.org/published/workflow?id=4769befb88f653d6, https://usegalaxy.org/published/workflow?id=478c263e8334bb31, https://usegalaxy.org/published/workflow?id=47e190ec408a71b1, https://usegalaxy.org/published/workflow?id=484f8fcf21d67376, https://usegalaxy.org/published/workflow?id=498a8c6329ca5728, https://usegalaxy.org/published/workflow?id=49a07807fcea8158, https://usegalaxy.org/published/workflow?id=49c9e8161a46667f, https://usegalaxy.org/published/workflow?id=49ca77212cc56ef9, https://usegalaxy.org/published/workflow?id=4a0ad87aa5aa558a, https://usegalaxy.org/published/workflow?id=4b92dfd20d48d479, https://usegalaxy.org/published/workflow?id=4ba61941f31f0215, https://usegalaxy.org/published/workflow?id=4bc7ca7ad5efaff4, https://usegalaxy.org/published/workflow?id=4bf38f5b45faa8a1, https://usegalaxy.org/published/workflow?id=4bf73376661baafd, https://usegalaxy.org/published/workflow?id=4c840284d2984fa0, https://usegalaxy.org/published/workflow?id=4c996921fb6a2334, https://usegalaxy.org/published/workflow?id=4dbac8374419d29e, https://usegalaxy.org/published/workflow?id=4ed9f54caa932479, https://usegalaxy.org/published/workflow?id=4f6e8ff94ca4f164, https://usegalaxy.org/published/workflow?id=5004f1087f5e87db, https://usegalaxy.org/published/workflow?id=505c826e8c99d7bf, https://usegalaxy.org/published/workflow?id=507c817755b2410d, https://usegalaxy.org/published/workflow?id=52cc435f50a6ff29, https://usegalaxy.org/published/workflow?id=52e099f693639115, https://usegalaxy.org/published/workflow?id=5361db01e3b6cc0c, https://usegalaxy.org/published/workflow?id=55911cad792d4f59, https://usegalaxy.org/published/workflow?id=56427a9b9c3848bf, https://usegalaxy.org/published/workflow?id=56530f4d41413832, https://usegalaxy.org/published/workflow?id=574e42683dc3961b, https://usegalaxy.org/published/workflow?id=578f46106f72c971, https://usegalaxy.org/published/workflow?id=57e6345fda3e2682, https://usegalaxy.org/published/workflow?id=5944c5effd56b0d6, https://usegalaxy.org/published/workflow?id=59554bfcad77e307, https://usegalaxy.org/published/workflow?id=597c4d54f8a8ebe7, https://usegalaxy.org/published/workflow?id=5aa4b9131c31cb79, https://usegalaxy.org/published/workflow?id=5b540de61a70df64, https://usegalaxy.org/published/workflow?id=5b72ffcea967494f, https://usegalaxy.org/published/workflow?id=5bd6d7af64192b86, https://usegalaxy.org/published/workflow?id=5c259623a010fe77, https://usegalaxy.org/published/workflow?id=5c85cd8c56b9f6ab, https://usegalaxy.org/published/workflow?id=5dfec2a3ae5fa765, https://usegalaxy.org/published/workflow?id=5e079a9ac49a5b8c, https://usegalaxy.org/published/workflow?id=5e38c7b36e4918ad, https://usegalaxy.org/published/workflow?id=5edabfc62f58d8cf, https://usegalaxy.org/published/workflow?id=605f03449ebef37e, https://usegalaxy.org/published/workflow?id=626260e3c3ee5c08, https://usegalaxy.org/published/workflow?id=6341c384ceaf47ed, https://usegalaxy.org/published/workflow?id=63b0ce2faec558d5, https://usegalaxy.org/published/workflow?id=6471aa8abbb3fa40, https://usegalaxy.org/published/workflow?id=653d553ac2fa51c8, https://usegalaxy.org/published/workflow?id=65ccf48b7872e36c, https://usegalaxy.org/published/workflow?id=65f3a5772ae05a7a, https://usegalaxy.org/published/workflow?id=66748e20a243eafe, https://usegalaxy.org/published/workflow?id=667493d318b86b7d, https://usegalaxy.org/published/workflow?id=66bc5f6d71466b7f, https://usegalaxy.org/published/workflow?id=66e90021db5c6b31, https://usegalaxy.org/published/workflow?id=672ca09dce4b0dc3, https://usegalaxy.org/published/workflow?id=6783f54acee9df33, https://usegalaxy.org/published/workflow?id=683e725f672b7d9b, https://usegalaxy.org/published/workflow?id=68832752b883c226, https://usegalaxy.org/published/workflow?id=68a9f03d99676bdc, https://usegalaxy.org/published/workflow?id=68b995393b3142ec, https://usegalaxy.org/published/workflow?id=68be9cfc0c58cb44, https://usegalaxy.org/published/workflow?id=68d41ffbf92b2a8e, https://usegalaxy.org/published/workflow?id=6960b8f6c98a9b9e, https://usegalaxy.org/published/workflow?id=696b2efc589afd6f, https://usegalaxy.org/published/workflow?id=6a2dace98986992a, https://usegalaxy.org/published/workflow?id=6b511b47176893e3, https://usegalaxy.org/published/workflow?id=6ba03802169c0063, https://usegalaxy.org/published/workflow?id=6c2bb2209aad5e44, https://usegalaxy.org/published/workflow?id=6d0a3f36d2736087, https://usegalaxy.org/published/workflow?id=6d778eeb176d563c, https://usegalaxy.org/published/workflow?id=6dcb43f86b9cd7dc, https://usegalaxy.org/published/workflow?id=6e75ac640853d0dd, https://usegalaxy.org/published/workflow?id=6f2e4b4860413153, https://usegalaxy.org/published/workflow?id=6f836f4b71d399e7, https://usegalaxy.org/published/workflow?id=6fc7497c86ebd8ee, https://usegalaxy.org/published/workflow?id=7072731b51e16923, https://usegalaxy.org/published/workflow?id=7090bb14a7af15bd, https://usegalaxy.org/published/workflow?id=7185085cbe953cd9, https://usegalaxy.org/published/workflow?id=734e08331f8f34b7, https://usegalaxy.org/published/workflow?id=73c20d784b7ef81a, https://usegalaxy.org/published/workflow?id=74049914e4a6c791, https://usegalaxy.org/published/workflow?id=7454015793c4adc9, https://usegalaxy.org/published/workflow?id=746f4eef47648b26, https://usegalaxy.org/published/workflow?id=74fe080f24f7da84, https://usegalaxy.org/published/workflow?id=75c2cf36253194c2, https://usegalaxy.org/published/workflow?id=768cee70d9aa8cc6, https://usegalaxy.org/published/workflow?id=769ec5a187095b38, https://usegalaxy.org/published/workflow?id=771345c66d5b9700, https://usegalaxy.org/published/workflow?id=78249d353038002b, https://usegalaxy.org/published/workflow?id=79527e2b83fd5c64, https://usegalaxy.org/published/workflow?id=79a282b2bf89c6ac, https://usegalaxy.org/published/workflow?id=7a23e64dfa6957ce, https://usegalaxy.org/published/workflow?id=7a4d834e794407d9, https://usegalaxy.org/published/workflow?id=7adf904dea83e699, https://usegalaxy.org/published/workflow?id=7af656b8ea5e7e2e, https://usegalaxy.org/published/workflow?id=7b8ee08ba291d231, https://usegalaxy.org/published/workflow?id=7bc71a005c6f18d0, https://usegalaxy.org/published/workflow?id=7ca9c5203520ca7e, https://usegalaxy.org/published/workflow?id=7da0b02000e3b9e8, https://usegalaxy.org/published/workflow?id=7dba74c915f63dc1, https://usegalaxy.org/published/workflow?id=7e56bee496344ddc, https://usegalaxy.org/published/workflow?id=7f6900852a81d121, https://usegalaxy.org/published/workflow?id=80afe572b6693ca1, https://usegalaxy.org/published/workflow?id=81183f40d2f3e395, https://usegalaxy.org/published/workflow?id=8182055f5ef561f3, https://usegalaxy.org/published/workflow?id=81f1f0fd6d9235fd, https://usegalaxy.org/published/workflow?id=85dc651884b93cf5, https://usegalaxy.org/published/workflow?id=85e2a1d6b1d4e3d7, https://usegalaxy.org/published/workflow?id=85f521f5c7351406, https://usegalaxy.org/published/workflow?id=864da6858d34df08, https://usegalaxy.org/published/workflow?id=86c67855acbf6124, https://usegalaxy.org/published/workflow?id=870f4988a5cc815e, https://usegalaxy.org/published/workflow?id=87ebf1b5956a61b5, https://usegalaxy.org/published/workflow?id=88327cb2e0fe3c25, https://usegalaxy.org/published/workflow?id=889b394b38b259eb, https://usegalaxy.org/published/workflow?id=88f8feaad0f615de, https://usegalaxy.org/published/workflow?id=89d3c800d3be6050, https://usegalaxy.org/published/workflow?id=8a01c78688beae1d, https://usegalaxy.org/published/workflow?id=8a15bda6ce7a63ec, https://usegalaxy.org/published/workflow?id=8ae311282a0d27a1, https://usegalaxy.org/published/workflow?id=8b4945a0fb49e03e, https://usegalaxy.org/published/workflow?id=8ccb42012dcb5db2, https://usegalaxy.org/published/workflow?id=8cf06b14037a8d5a, https://usegalaxy.org/published/workflow?id=8cfbaa14cff5a633, https://usegalaxy.org/published/workflow?id=8d605fbd33003d26, https://usegalaxy.org/published/workflow?id=8db9ccf14567d9ba, https://usegalaxy.org/published/workflow?id=8e1c6ad6ff623015, https://usegalaxy.org/published/workflow?id=903e35b62946ed76, https://usegalaxy.org/published/workflow?id=90f5b512997c70f8, https://usegalaxy.org/published/workflow?id=918863756ce93725, https://usegalaxy.org/published/workflow?id=9192807702bc3de2, https://usegalaxy.org/published/workflow?id=91a4daecbb97d03e, https://usegalaxy.org/published/workflow?id=91ed290805f590de, https://usegalaxy.org/published/workflow?id=931dd3e6b1fae4f5, https://usegalaxy.org/published/workflow?id=932b3bc10186f73e, https://usegalaxy.org/published/workflow?id=936ed7447c8e0a2d, https://usegalaxy.org/published/workflow?id=93c1fef4472aa7a8, https://usegalaxy.org/published/workflow?id=941ced9f12eecd3c, https://usegalaxy.org/published/workflow?id=950c7245a6c3f6e9, https://usegalaxy.org/published/workflow?id=958b64b05011d8c0, https://usegalaxy.org/published/workflow?id=961dac8100c6c70c, https://usegalaxy.org/published/workflow?id=962f784745c1b740, https://usegalaxy.org/published/workflow?id=96bd0007dceec123, https://usegalaxy.org/published/workflow?id=97dcd7285ebd5817, https://usegalaxy.org/published/workflow?id=987d5caea37794c8, https://usegalaxy.org/published/workflow?id=9938a81fb6911412, https://usegalaxy.org/published/workflow?id=9aa6320de30e2675, https://usegalaxy.org/published/workflow?id=9ab68c65337b893b, https://usegalaxy.org/published/workflow?id=9b384b774485b2f2, https://usegalaxy.org/published/workflow?id=9da91815a6588268, https://usegalaxy.org/published/workflow?id=9ddfdc9d6cacea88, https://usegalaxy.org/published/workflow?id=9e1762e46ddf9a85, https://usegalaxy.org/published/workflow?id=9ecfaa613a112d78, https://usegalaxy.org/published/workflow?id=9f4c4038d1c519e2, https://usegalaxy.org/published/workflow?id=a124d41da896779c, https://usegalaxy.org/published/workflow?id=a253589432a44e5a, https://usegalaxy.org/published/workflow?id=a2a924b871b1c96d, https://usegalaxy.org/published/workflow?id=a2b4a868fa9795d1, https://usegalaxy.org/published/workflow?id=a3de4b3f7b910059, https://usegalaxy.org/published/workflow?id=a3ff7dbfadbd96e2, https://usegalaxy.org/published/workflow?id=a46ad0b9240d1a13, https://usegalaxy.org/published/workflow?id=a4a6d6846c1692f9, https://usegalaxy.org/published/workflow?id=a5bdab0b219b3797, https://usegalaxy.org/published/workflow?id=a638e12411586555, https://usegalaxy.org/published/workflow?id=a666aaaa32f62487, https://usegalaxy.org/published/workflow?id=a8b9252fad5fe06a, https://usegalaxy.org/published/workflow?id=a8e0f77cd6ef49f9, https://usegalaxy.org/published/workflow?id=a97c694b3298ae44, https://usegalaxy.org/published/workflow?id=a97f55f0d098b07e, https://usegalaxy.org/published/workflow?id=aaec757e04605d3a, https://usegalaxy.org/published/workflow?id=ab0be4897d5355ac, https://usegalaxy.org/published/workflow?id=ab490af27c9ccc80, https://usegalaxy.org/published/workflow?id=abf1aec0f3d48d03, https://usegalaxy.org/published/workflow?id=ac3755c1ae5f7f16, https://usegalaxy.org/published/workflow?id=acada5044d64a30a, https://usegalaxy.org/published/workflow?id=ad19db6504b6dc33, https://usegalaxy.org/published/workflow?id=adca3f2ca63730fe, https://usegalaxy.org/published/workflow?id=af85a2ae187409f4, https://usegalaxy.org/published/workflow?id=afa89bb0e8966753, https://usegalaxy.org/published/workflow?id=affdc1bf42475cc9, https://usegalaxy.org/published/workflow?id=b094b6e1e7d48416, https://usegalaxy.org/published/workflow?id=b0c7f02cb766c819, https://usegalaxy.org/published/workflow?id=b0f85c802c1ea7f8, https://usegalaxy.org/published/workflow?id=b12f99e2233fcca6, https://usegalaxy.org/published/workflow?id=b1b4fc510099d592, https://usegalaxy.org/published/workflow?id=b1cfa3c239ef2523, https://usegalaxy.org/published/workflow?id=b661fb850c4b4b01, https://usegalaxy.org/published/workflow?id=b6d535f210efa18e, https://usegalaxy.org/published/workflow?id=b7b69aaee5202144, https://usegalaxy.org/published/workflow?id=b7c67632a6eabda5, https://usegalaxy.org/published/workflow?id=b7ec8d79dc563a93, https://usegalaxy.org/published/workflow?id=b8742810ac30429d, https://usegalaxy.org/published/workflow?id=b8ed069eea7879e7, https://usegalaxy.org/published/workflow?id=b8fdf05ec7540510, https://usegalaxy.org/published/workflow?id=b93a475af82a3d36, https://usegalaxy.org/published/workflow?id=bb1cb6abfe84a646, https://usegalaxy.org/published/workflow?id=bb8609e8d2d4bd89, https://usegalaxy.org/published/workflow?id=bb9ee8e05f7042a9, https://usegalaxy.org/published/workflow?id=bbc894a79eb0e769, https://usegalaxy.org/published/workflow?id=bd587951f475533a, https://usegalaxy.org/published/workflow?id=bd6bfd338ffb9637, https://usegalaxy.org/published/workflow?id=be46c5bb8c06a470, https://usegalaxy.org/published/workflow?id=be54e57345ce7ca5, https://usegalaxy.org/published/workflow?id=be6abf6b2c45d15e, https://usegalaxy.org/published/workflow?id=bf79271a438ffa54, https://usegalaxy.org/published/workflow?id=bfd2e7e63d3e6856, https://usegalaxy.org/published/workflow?id=bfef75672b9c3ea4, https://usegalaxy.org/published/workflow?id=bff8bc8d0059274f, https://usegalaxy.org/published/workflow?id=c07476a937b4e52e, https://usegalaxy.org/published/workflow?id=c09b8a0c96123cbb, https://usegalaxy.org/published/workflow?id=c0a9a2d53b8660de, https://usegalaxy.org/published/workflow?id=c17fa637bcdec86e, https://usegalaxy.org/published/workflow?id=c3ea8fa3bb202dc6, https://usegalaxy.org/published/workflow?id=c46d9db2531a44b0, https://usegalaxy.org/published/workflow?id=c478d8de43a3f30f, https://usegalaxy.org/published/workflow?id=c50f10ecd1ac2ff9, https://usegalaxy.org/published/workflow?id=c5f4b7b2463f338b, https://usegalaxy.org/published/workflow?id=c64719e91e7346a2, https://usegalaxy.org/published/workflow?id=c66e2738f37a8c16, https://usegalaxy.org/published/workflow?id=c74a01ba2f2a80d3, https://usegalaxy.org/published/workflow?id=c75acc1ab44c121f, https://usegalaxy.org/published/workflow?id=c7693951c6215e19, https://usegalaxy.org/published/workflow?id=c7aca0f5bb660907, https://usegalaxy.org/published/workflow?id=c88708cd216dbc17, https://usegalaxy.org/published/workflow?id=c8e9cb724c60144c, https://usegalaxy.org/published/workflow?id=c8f9e048ddae7d03, https://usegalaxy.org/published/workflow?id=c9474fcce2a21188, https://usegalaxy.org/published/workflow?id=c983ea8a32662cd6, https://usegalaxy.org/published/workflow?id=ca1f478276b38c4d, https://usegalaxy.org/published/workflow?id=ca3f2d9554e9e1c8, https://usegalaxy.org/published/workflow?id=cad24fc12b2451c6, https://usegalaxy.org/published/workflow?id=cb4ccd3068819418, https://usegalaxy.org/published/workflow?id=cb810cdaa4915f4b, https://usegalaxy.org/published/workflow?id=cc50da71cdf6f244, https://usegalaxy.org/published/workflow?id=ccb66f80518daba3, https://usegalaxy.org/published/workflow?id=cd1badac800122c2, https://usegalaxy.org/published/workflow?id=cdf5dffbed938d49, https://usegalaxy.org/published/workflow?id=cfa7c3d7e69e91d7, https://usegalaxy.org/published/workflow?id=cfd5dc3c7bc1e832, https://usegalaxy.org/published/workflow?id=d02b4d7483936b73, https://usegalaxy.org/published/workflow?id=d08135fa13d1745e, https://usegalaxy.org/published/workflow?id=d0847ce8261eb922, https://usegalaxy.org/published/workflow?id=d136d24e4c96962a, https://usegalaxy.org/published/workflow?id=d1ca40dd7e591025, https://usegalaxy.org/published/workflow?id=d2c408df40dc311b, https://usegalaxy.org/published/workflow?id=d2dec03b33af1b2f, https://usegalaxy.org/published/workflow?id=d2e8a6b39fe88f4c, https://usegalaxy.org/published/workflow?id=d341660f3d1ce8bf, https://usegalaxy.org/published/workflow?id=d3811603bbd4a940, https://usegalaxy.org/published/workflow?id=d3f35215e6f45d79, https://usegalaxy.org/published/workflow?id=d485bf21a5069fe4, https://usegalaxy.org/published/workflow?id=d4b2b85db47c405e, https://usegalaxy.org/published/workflow?id=d5183b025d0e78dd, https://usegalaxy.org/published/workflow?id=d5cba8a5ba6880fd, https://usegalaxy.org/published/workflow?id=d6cf3be79a4b7db4, https://usegalaxy.org/published/workflow?id=d6d49e6c823e7d54, https://usegalaxy.org/published/workflow?id=d7ea4bdc208ae5e8, https://usegalaxy.org/published/workflow?id=d8afd017905d6702, https://usegalaxy.org/published/workflow?id=daaded719dcfd53b, https://usegalaxy.org/published/workflow?id=dae5d5e5df5c4dd7, https://usegalaxy.org/published/workflow?id=dcbc71347300822d, https://usegalaxy.org/published/workflow?id=dcc7c5fdef8780fd, https://usegalaxy.org/published/workflow?id=dd43ae9a5b303086, https://usegalaxy.org/published/workflow?id=ddb737f2ad0589e8, https://usegalaxy.org/published/workflow?id=deea71ccac30c7ea, https://usegalaxy.org/published/workflow?id=e0da87cadb1e6d5f, https://usegalaxy.org/published/workflow?id=e107d8036c064616, https://usegalaxy.org/published/workflow?id=e10859cc568da07c, https://usegalaxy.org/published/workflow?id=e12324f5e3b930fd, https://usegalaxy.org/published/workflow?id=e12e642b88a0fe08, https://usegalaxy.org/published/workflow?id=e1cc0886cd27b92e, https://usegalaxy.org/published/workflow?id=e31abcc04c5c69bc, https://usegalaxy.org/published/workflow?id=e325b97b81b10edb, https://usegalaxy.org/published/workflow?id=e3c1736cca484dda, https://usegalaxy.org/published/workflow?id=e3e646407e3f921d, https://usegalaxy.org/published/workflow?id=e4dd39237df58884, https://usegalaxy.org/published/workflow?id=e4f1cce653812a22, https://usegalaxy.org/published/workflow?id=e4f6b68301aafd38, https://usegalaxy.org/published/workflow?id=e500078649dd026c, https://usegalaxy.org/published/workflow?id=e50e36a25bae863c, https://usegalaxy.org/published/workflow?id=e53b695ff681b675, https://usegalaxy.org/published/workflow?id=e586940a7c93ef73, https://usegalaxy.org/published/workflow?id=e5c066644cc7cc07, https://usegalaxy.org/published/workflow?id=e6a6223ef5ef85a7, https://usegalaxy.org/published/workflow?id=e75a7802d2941f31, https://usegalaxy.org/published/workflow?id=e817b5b275b4952f, https://usegalaxy.org/published/workflow?id=e8b1d1e5e889c986, https://usegalaxy.org/published/workflow?id=e97da2da9e0290a7, https://usegalaxy.org/published/workflow?id=e9aaa56af9d230d6, https://usegalaxy.org/published/workflow?id=ea3257e0ef9f505a, https://usegalaxy.org/published/workflow?id=ea97d3a23e6d38e6, https://usegalaxy.org/published/workflow?id=eab7347464872b4c, https://usegalaxy.org/published/workflow?id=eae5ae951abe6761, https://usegalaxy.org/published/workflow?id=eaf96fa3c39c210b, https://usegalaxy.org/published/workflow?id=ebbcdc389aad0eb8, https://usegalaxy.org/published/workflow?id=ebe7f93204402a5a, https://usegalaxy.org/published/workflow?id=ef6036efe8a03a12, https://usegalaxy.org/published/workflow?id=f09033420c6267ab, https://usegalaxy.org/published/workflow?id=f18e6fa5270fcd37, https://usegalaxy.org/published/workflow?id=f1a54b10d4afce8f, https://usegalaxy.org/published/workflow?id=f1dd64a7464054a4, https://usegalaxy.org/published/workflow?id=f365c53b5024d7f1, https://usegalaxy.org/published/workflow?id=f5200b7bcceed5d6, https://usegalaxy.org/published/workflow?id=f58aa85ceaa19534, https://usegalaxy.org/published/workflow?id=f58c90061c31bd48, https://usegalaxy.org/published/workflow?id=f5d3d6fe05271c4b, https://usegalaxy.org/published/workflow?id=f6ee07c7edf170fb, https://usegalaxy.org/published/workflow?id=f794b4b9bb990c80, https://usegalaxy.org/published/workflow?id=f7a3567ba6b57c9c, https://usegalaxy.org/published/workflow?id=f7d1c6be4e4c3357, https://usegalaxy.org/published/workflow?id=f8d85cda81baa77d, https://usegalaxy.org/published/workflow?id=f8ed1ae9d501bb87, https://usegalaxy.org/published/workflow?id=f93a4f6b5f3aaaed, https://usegalaxy.org/published/workflow?id=fa26fd51caea53c7, https://usegalaxy.org/published/workflow?id=fa36d9b50e956917, https://usegalaxy.org/published/workflow?id=fb98ef955b3dbd4b, https://usegalaxy.org/published/workflow?id=fbf75fbb72b488bd, https://usegalaxy.org/published/workflow?id=fc7b14aafa0b421e, https://usegalaxy.org/published/workflow?id=fd155fcba9bed7ff, https://usegalaxy.org/published/workflow?id=fd40e50c9f1545ce, https://usegalaxy.org/published/workflow?id=fda29ba2b6c98f8b, https://usegalaxy.org/published/workflow?id=fdfe38dc92e51611, https://usegalaxy.org/published/workflow?id=ff3ade25b35f4893, https://usegalaxy.org/published/workflow?id=fff1a5c7475b3eeb, https://workflowhub.eu/workflows/1054?version=1, https://workflowhub.eu/workflows/1057?version=8, https://workflowhub.eu/workflows/1060?version=1, https://workflowhub.eu/workflows/1061?version=1, https://workflowhub.eu/workflows/1063?version=5, https://workflowhub.eu/workflows/1077?version=1, https://workflowhub.eu/workflows/109?version=9, https://workflowhub.eu/workflows/1103?version=3, https://workflowhub.eu/workflows/1104?version=2, https://workflowhub.eu/workflows/1164?version=2, https://workflowhub.eu/workflows/1189?version=2, https://workflowhub.eu/workflows/1201?version=4, https://workflowhub.eu/workflows/1218?version=1, https://workflowhub.eu/workflows/1225?version=1, https://workflowhub.eu/workflows/1327?version=6, https://workflowhub.eu/workflows/1396?version=1, https://workflowhub.eu/workflows/1402?version=1, https://workflowhub.eu/workflows/1405?version=1, https://workflowhub.eu/workflows/1413?version=1, https://workflowhub.eu/workflows/1419?version=1, https://workflowhub.eu/workflows/1420?version=1, https://workflowhub.eu/workflows/1425?version=1, https://workflowhub.eu/workflows/1426?version=1, https://workflowhub.eu/workflows/1435?version=1, https://workflowhub.eu/workflows/1447?version=2, https://workflowhub.eu/workflows/1448?version=1, https://workflowhub.eu/workflows/1450?version=1, https://workflowhub.eu/workflows/1451?version=2, https://workflowhub.eu/workflows/1464?version=1, https://workflowhub.eu/workflows/1466?version=2, https://workflowhub.eu/workflows/1468?version=1, https://workflowhub.eu/workflows/1469?version=1, https://workflowhub.eu/workflows/1479?version=1, https://workflowhub.eu/workflows/1486?version=1, https://workflowhub.eu/workflows/1487?version=2, https://workflowhub.eu/workflows/1489?version=1, https://workflowhub.eu/workflows/1490?version=1, https://workflowhub.eu/workflows/1492?version=2, https://workflowhub.eu/workflows/1496?version=1, https://workflowhub.eu/workflows/1515?version=1, https://workflowhub.eu/workflows/1518?version=1, https://workflowhub.eu/workflows/1520?version=1, https://workflowhub.eu/workflows/1524?version=1, https://workflowhub.eu/workflows/1530?version=1, https://workflowhub.eu/workflows/1533?version=1, https://workflowhub.eu/workflows/1536?version=1, https://workflowhub.eu/workflows/1537?version=1, https://workflowhub.eu/workflows/1539?version=1, https://workflowhub.eu/workflows/1543?version=1, https://workflowhub.eu/workflows/1551?version=1, https://workflowhub.eu/workflows/1552?version=1, https://workflowhub.eu/workflows/1555?version=1, https://workflowhub.eu/workflows/1560?version=1, https://workflowhub.eu/workflows/1565?version=1, https://workflowhub.eu/workflows/1567?version=1, https://workflowhub.eu/workflows/1571?version=1, https://workflowhub.eu/workflows/1575?version=1, https://workflowhub.eu/workflows/1579?version=1, https://workflowhub.eu/workflows/1594?version=1, https://workflowhub.eu/workflows/1601?version=1, https://workflowhub.eu/workflows/1624?version=1, https://workflowhub.eu/workflows/1629?version=1, https://workflowhub.eu/workflows/1632?version=1, https://workflowhub.eu/workflows/1638?version=1, https://workflowhub.eu/workflows/1650?version=1, https://workflowhub.eu/workflows/1659?version=1, https://workflowhub.eu/workflows/1665?version=1, https://workflowhub.eu/workflows/1677?version=1, https://workflowhub.eu/workflows/1679?version=1, https://workflowhub.eu/workflows/1684?version=1, https://workflowhub.eu/workflows/1688?version=1, https://workflowhub.eu/workflows/1699?version=1, https://workflowhub.eu/workflows/1702?version=1, https://workflowhub.eu/workflows/1708?version=1, https://workflowhub.eu/workflows/1713?version=1, https://workflowhub.eu/workflows/1715?version=1, https://workflowhub.eu/workflows/1717?version=1, https://workflowhub.eu/workflows/1718?version=1, https://workflowhub.eu/workflows/248?version=4, https://workflowhub.eu/workflows/403?version=9, https://workflowhub.eu/workflows/561?version=11, https://workflowhub.eu/workflows/603?version=2, https://workflowhub.eu/workflows/607?version=1, https://workflowhub.eu/workflows/612?version=23, https://workflowhub.eu/workflows/622?version=11, https://workflowhub.eu/workflows/624?version=1, https://workflowhub.eu/workflows/625?version=23, https://workflowhub.eu/workflows/629?version=1, https://workflowhub.eu/workflows/633?version=21, https://workflowhub.eu/workflows/641?version=25, https://workflowhub.eu/workflows/642?version=23, https://workflowhub.eu/workflows/643?version=5, https://workflowhub.eu/workflows/645?version=12, https://workflowhub.eu/workflows/655?version=1, https://workflowhub.eu/workflows/689?version=1, https://workflowhub.eu/workflows/698?version=1, https://workflowhub.eu/workflows/751?version=16, https://workflowhub.eu/workflows/794?version=2, https://workflowhub.eu/workflows/876?version=1, https://workflowhub.eu/workflows/880?version=1 |
assembly/assembly-decontamination, assembly/ecoli_comparison, contributing/create-new-tutorial, data-science/data-manipulation-olympics, digital-humanities/text_mining_chinese, ecology/Obitools-metabarcoding, ecology/ref-based-rad-seq, epigenetics/atac-seq, epigenetics/ewas-suite, galaxy-interface/workflow-reports, genome-annotation/bacterial-comparative-genomics-dataset-construction, genome-annotation/gene-centric, genome-annotation/tnseq, introduction/data-manipulation-olympics, introduction/galaxy-intro-101-everyone, introduction/galaxy-intro-peaks2genes, introduction/galaxy-reproduce, microbiome/clinical-mp-2-discovery, microbiome/clinical-mp-3-verification, microbiome/clinical-mp-4-quantitation, microbiome/metaplasmidome_query, microbiome/metatranscriptomics, microbiome/metatranscriptomics-short, microbiome/pathogen-detection-from-nanopore-foodborne-data, proteomics/clinical-mp-2-discovery, proteomics/clinical-mp-3-verification, proteomics/clinical-mp-4-quantitation, proteomics/maxquant-label-free, proteomics/maxquant-msstats-dda-lfq, proteomics/metaquantome-data-creation, proteomics/neoantigen-hla-binding-novel-peptides, sequence-analysis/tapscan-streptophyte-algae, single-cell/GO-enrichment, single-cell/bulk-deconvolution-evaluate, single-cell/bulk-music-2-preparescref, single-cell/scatac-standard-processing-snapatac2, single-cell/scrna-case_alevin, single-cell/scrna-case_alevin-combine-datasets, single-cell/scrna-case_basic-pipeline, single-cell/scrna-case_monocle3-trajectories, single-cell/scrna-data-ingest, single-cell/scrna-ncbi-anndata, single-cell/scrna-seurat-pbmc3k, statistics/gpu_jupyter_lab, transcriptomics/differential-isoform-expression, transcriptomics/minerva-pathways, transcriptomics/mirna-target-finder, transcriptomics/network-analysis-with-heinz, transcriptomics/ref-based, transcriptomics/rna-seq-analysis-clustering-viz, transcriptomics/rna-seq-genes-to-pathways, transcriptomics/rna-seq-viz-with-heatmap2, variant-analysis/non-dip, variant-analysis/pox-tiled-amplicon, visualisation/circos, visualisation/circos-microbial |
|
delete_overlapping_indels |
delete_overlapping_indels |
Delete Overlapping Indels from a chromosome indels file |
2013-09-25 |
|
1.0.0 |
|
|
To update |
Sequence Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/delete_overlapping_indels |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/delete_overlapping_indels |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
6 |
7 |
26 |
40 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
40 |
26 |
7 |
6 |
|
|
|
dewseq |
dewseq |
DEWSeq is a sliding window based peak caller for eCLIP/iCLIP data |
2022-10-20 |
https://github.com/EMBL-Hentze-group/DEWSeq_analysis_helpers |
0.1.0+galaxy0 |
python |
|
To update |
Sequence Analysis, RNA, CLIP-seq |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/dewseq |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/dewseq |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
20 |
20 |
96 |
96 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
96 |
96 |
20 |
20 |
|
|
|
dgidb_annotator |
dgidb_annotate |
Annotates a tabular file with information from the Drug-Gene Interaction Database (http://dgidb.genome.wustl.edu/) |
2013-11-28 |
|
0.1 |
|
|
To update |
Systems Biology, Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/dgidb_annotator |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/dgidb_annotator |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
26 |
30 |
52 |
69 |
0 |
133 |
0 |
304 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
373 |
52 |
163 |
26 |
|
|
|
diff |
diff |
GNU diff tool that calculates the differences between two files. |
2020-03-29 |
http://www.gnu.org/software/diffutils/ |
3.10 |
diffutils |
|
To update |
Text Manipulation |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/diff |
https://github.com/bgruening/galaxytools/tree/master/tools/diff |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
105 |
105 |
397 |
397 |
26 |
26 |
44 |
44 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
441 |
441 |
131 |
131 |
https://usegalaxy.eu/published/workflow?id=c917db7d7ba7ea6f, https://workflowhub.eu/workflows/1623?version=1 |
digital-humanities/text_mining_chinese |
|
diffbind |
|
Diffbind provides functions for processing ChIP-Seq data. |
2015-02-28 |
http://bioconductor.org/packages/release/bioc/html/DiffBind.html |
|
|
|
To update |
ChIP-seq |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/diffbind |
https://github.com/bgruening/galaxytools/tree/master/tools/diffbind |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
divide_pg_snp |
dividePgSnp |
Separate pgSnp alleles into columns |
2013-09-25 |
|
1.0.0 |
|
|
To update |
Sequence Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/divide_pg_snp |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/divide_pg_snp |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
9 |
10 |
25 |
38 |
21 |
55 |
67 |
174 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
212 |
92 |
65 |
30 |
|
|
|
dorina |
dorina_search |
data source for RNA interactions in post-transcriptional regulation |
2015-05-20 |
|
1.0 |
|
|
To update |
RNA, Data Source |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/dorina/ |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/dorina |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
31 |
767 |
1639 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1639 |
767 |
31 |
4 |
|
|
|
dot2ct |
rnastructure_dot2ct |
Dot-Bracket to Connect Table (CT) |
2015-06-10 |
|
5.7.a |
rnastructure |
6.4 |
To update |
Sequence Analysis, RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/dot2ct |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/dot2ct |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
dotknot |
dotknot |
DotKnot is a heuristic method for pseudoknot prediction in a given RNA sequence |
2015-09-17 |
http://dotknot.csse.uwa.edu.au/ |
1.3.1 |
vienna_rna |
|
To update |
RNA, Proteomics |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/rna/dotknot |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/dotknot |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
12 |
15 |
60 |
88 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
88 |
60 |
15 |
12 |
|
|
|
draw_stacked_barplots |
draw_stacked_barplots |
Draw Stacked Bar Plots for different categories and different criteria |
2013-09-25 |
|
1.0.0 |
R |
|
To update |
Graphics, Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/draw_stacked_barplots |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/draw_stacked_barplots |
|
|
|
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
51 |
57 |
187 |
224 |
0 |
0 |
0 |
0 |
21 |
33 |
185 |
236 |
7 |
7 |
9 |
9 |
469 |
381 |
97 |
79 |
|
|
|
dwt_cor_ava_perclass |
compute_p-values_correlation_coefficients_feature_occurrences_between_two_datasets_using_discrete_wavelet_transfom |
Compute P-values and Correlation Coefficients for Feature Occurrences |
2014-01-27 |
|
1.0.1 |
r-waveslim |
1.7.5 |
To update |
Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/dwt_cor_ava_perclass |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/dwt_cor_ava_perclass |
|
|
|
|
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8 |
11 |
157 |
162 |
0 |
0 |
0 |
0 |
162 |
157 |
11 |
8 |
|
|
|
dwt_cor_avb_all |
compute_p-values_correlation_coefficients_featureA_featureB_occurrences_between_two_datasets_using_discrete_wavelet_transfom |
Compute P-values and Correlation Coefficients for Occurrences of Two Set of Features |
2014-01-27 |
|
1.0.1 |
r-waveslim |
1.7.5 |
To update |
Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/dwt_cor_avb_all |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/dwt_cor_avb_all |
|
|
|
|
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 |
7 |
145 |
145 |
0 |
0 |
0 |
0 |
145 |
145 |
7 |
7 |
|
|
|
dwt_ivc_all |
compute_p-values_second_moments_feature_occurrences_between_two_datasets_using_discrete_wavelet_transfom |
Compute P-values and Second Moments for Feature Occurrences |
2014-01-27 |
|
1.0.1 |
r-waveslim |
1.7.5 |
To update |
Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/dwt_ivc_all |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/dwt_ivc_all |
|
|
|
|
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
7 |
142 |
144 |
0 |
0 |
0 |
0 |
144 |
142 |
7 |
5 |
|
|
|
dwt_var_perclass |
compute_p-values_max_variances_feature_occurrences_in_one_dataset_using_discrete_wavelet_transfom |
Compute P-values and Max Variances for Feature Occurrences |
2014-01-27 |
|
1.0.1 |
r-waveslim |
1.7.5 |
To update |
Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/dwt_var_perclass |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/dwt_var_perclass |
|
|
|
|
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 |
8 |
152 |
153 |
0 |
0 |
0 |
0 |
153 |
152 |
8 |
7 |
|
|
|
dwt_var_perfeature |
dwt_var1 |
Wavelet variance using Discrete Wavelet Transfoms |
2014-01-27 |
|
1.0.2 |
r-bitops |
|
To update |
Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/dwt_var_perfeature |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/dwt_var_perfeature |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
2 |
4 |
23 |
36 |
4 |
4 |
11 |
11 |
5 |
7 |
210 |
241 |
2 |
2 |
2 |
2 |
290 |
246 |
17 |
13 |
|
|
|
edta |
edta |
The EDTA package was designed to filter out false discoveries in raw TE candidates and generate a high-quality non-redundant TE library for whole-genome TE annotations. |
2022-10-16 |
https://github.com/oushujun/EDTA |
|
edta |
2.2.2 |
To update |
Variant Analysis |
De-novo assembly, Deisotoping, Genome annotation |
De-novo assembly, Deisotoping, Genome annotation |
Workflows, Mobile genetic elements, Plant biology, Transcription factors and regulatory sites, Model organisms |
Workflows, Mobile genetic elements, Plant biology, Transcription factors and regulatory sites, Model organisms |
bgruening |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/edta |
https://github.com/bgruening/galaxytools/tree/master/tools/edta |
edta |
The Extensive de novo TE Annotator (EDTA) |
The EDTA package was designed to filter out false discoveries in raw TE candidates and generate a high-quality non-redundant TE library for whole-genome TE annotations. Selection of initial search programs were based on benckmarkings on the annotation performance using a manually curated TE library in the rice genome. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
129 |
129 |
4601 |
4601 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4601 |
4601 |
129 |
129 |
|
|
|
effectivet3 |
effectiveT3 |
Find bacterial type III effectors in protein sequences |
2013-04-30 |
http://effectors.org |
0.0.21 |
effectiveT3 |
1.0.1 |
To update |
Sequence Analysis |
Sequence classification |
Sequence classification |
Sequence analysis |
Sequence analysis |
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/effectiveT3 |
https://github.com/peterjc/pico_galaxy/tree/master/tools/effectiveT3 |
effectivet3 |
EffectiveT3 |
Prediction of putative Type-III secreted proteins. |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
epicseg |
epicseg_segment |
EpiCSeg is a tool for conducting chromatin segmentation. |
2018-03-02 |
https://github.com/lamortenera/epicseg |
@VERSION_STRING@ |
epicseg |
1.0 |
To update |
Epigenetics |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/epicseg |
https://github.com/bgruening/galaxytools/tree/master/tools/epicseg |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
18 |
22 |
135 |
255 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
255 |
135 |
22 |
18 |
|
|
|
erga_ear |
make_ear |
A tool to compile assembly reports and stastics from assembly pipeline |
2024-06-07 |
https://github.com/ERGA-consortium/EARs/tree/main |
24.10.15 |
reportlab |
|
To update |
Sequence Analysis, Assembly |
|
|
|
|
bgruening |
https://github.com/ERGA-consortium/EARs/tree/main |
https://github.com/bgruening/galaxytools/tree/master/tools/ear |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
83 |
83 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
83 |
83 |
3 |
3 |
|
|
|
exparna |
exparna |
ExpaRNA is a fast, motif-based comparison and alignment tool for RNA molecules. |
2015-02-28 |
http://rna.informatik.uni-freiburg.de/ExpaRNA/Input.jsp |
1.0.1 |
exparna |
1.0.1 |
Up-to-date |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/exparna |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/exparna |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
express |
express |
Quantify the abundances of a set of target sequences from sampled subsequences |
2014-01-27 |
|
1.1.1 |
eXpress |
1.5.1 |
To update |
RNA |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/express |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/express |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
32 |
46 |
258 |
338 |
0 |
117 |
0 |
1184 |
22 |
60 |
2426 |
2903 |
0 |
0 |
0 |
0 |
4425 |
2684 |
223 |
54 |
|
|
|
fasta_compute_length |
fasta_compute_length |
Compute sequence length |
2014-05-19 |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/fasta_compute_length |
1.0.4 |
python |
|
To update |
Fasta Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/fasta_compute_length |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/fasta_compute_length |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1106 |
1318 |
9829 |
10754 |
1432 |
5802 |
18807 |
52942 |
177 |
211 |
5259 |
5507 |
14 |
15 |
320 |
330 |
69533 |
34215 |
7346 |
2729 |
https://dev.workflowhub.eu/workflows/1078?version=1, https://dev.workflowhub.eu/workflows/1113?version=2, https://usegalaxy.eu/published/workflow?id=08f41680101a1a45, https://usegalaxy.eu/published/workflow?id=0de5fcc38ef1501d, https://usegalaxy.eu/published/workflow?id=0e492839192d26e0, https://usegalaxy.eu/published/workflow?id=152223c8aed27357, https://usegalaxy.eu/published/workflow?id=1ce406de61de8492, https://usegalaxy.eu/published/workflow?id=2880a32a52d27743, https://usegalaxy.eu/published/workflow?id=2d0400b5d05c6c10, https://usegalaxy.eu/published/workflow?id=2e93613c688ea52e, https://usegalaxy.eu/published/workflow?id=2f053b615d9788bf, https://usegalaxy.eu/published/workflow?id=309969a261189b5f, https://usegalaxy.eu/published/workflow?id=33312e5643279e8a, https://usegalaxy.eu/published/workflow?id=38f12705279b5dfa, https://usegalaxy.eu/published/workflow?id=3cf3dd9727b7ac92, https://usegalaxy.eu/published/workflow?id=5f29105e842716db, https://usegalaxy.eu/published/workflow?id=6e1fe7372e93fae0, https://usegalaxy.eu/published/workflow?id=972db4abc51bb3ab, https://usegalaxy.eu/published/workflow?id=a018307be3563f28, https://usegalaxy.eu/published/workflow?id=a31100610fba17a1, https://usegalaxy.eu/published/workflow?id=aada0111f835ce49, https://usegalaxy.eu/published/workflow?id=ada52ba09b462567, https://usegalaxy.eu/published/workflow?id=b77e3b08092fa73e, https://usegalaxy.eu/published/workflow?id=c696b37d1bf68e9b, https://usegalaxy.eu/published/workflow?id=cc2bc81352d2e2cd, https://usegalaxy.eu/published/workflow?id=df08e520ec3dbcb7, https://usegalaxy.eu/published/workflow?id=e522be58f0bac656, https://usegalaxy.eu/published/workflow?id=efb58bba65393347, https://usegalaxy.org.au/published/workflow?id=5cfea39918e8632d, https://usegalaxy.org.au/published/workflow?id=6b1b0a945d367b4c, https://usegalaxy.org.au/published/workflow?id=b432a1312859edd2, https://usegalaxy.org.au/published/workflow?id=b808cd1c0090b068, https://usegalaxy.org/published/workflow?id=18e7a954c0b6e4bc, https://usegalaxy.org/published/workflow?id=19c9c8cc3c813bda, https://usegalaxy.org/published/workflow?id=1d923ce15c17b1fe, https://usegalaxy.org/published/workflow?id=2f7638035fb889ac, https://usegalaxy.org/published/workflow?id=386d3b300cf05305, https://usegalaxy.org/published/workflow?id=400c1d170f073279, https://usegalaxy.org/published/workflow?id=505c826e8c99d7bf, https://usegalaxy.org/published/workflow?id=55aa743125c2465d, https://usegalaxy.org/published/workflow?id=59347cc210c4cdbc, https://usegalaxy.org/published/workflow?id=7b67ffcf1b7c2232, https://usegalaxy.org/published/workflow?id=85d825931edf4a64, https://usegalaxy.org/published/workflow?id=896d29573ea3e574, https://usegalaxy.org/published/workflow?id=89d3c800d3be6050, https://usegalaxy.org/published/workflow?id=8b7e03f09b0183d9, https://usegalaxy.org/published/workflow?id=8e1c6ad6ff623015, https://usegalaxy.org/published/workflow?id=c88fe3dc11bc4905, https://usegalaxy.org/published/workflow?id=cdf5dffbed938d49, https://usegalaxy.org/published/workflow?id=cfa9e6e722b086c8, https://usegalaxy.org/published/workflow?id=d851f8436497dd1c, https://workflowhub.eu/workflows/1632?version=1, https://workflowhub.eu/workflows/1638?version=1, https://workflowhub.eu/workflows/439?version=3, https://workflowhub.eu/workflows/880?version=1 |
assembly/ecoli_comparison, sequence-analysis/viral_primer_design, single-cell/scatac-batch-correction-snapatac2, single-cell/scatac-standard-processing-snapatac2, variant-analysis/pox-tiled-amplicon |
|
fasta_concatenate_by_species |
fasta_concatenate0 |
Concatenate FASTA alignment by species |
2014-05-19 |
|
0.0.1 |
bx-python |
0.14.0 |
To update |
Fasta Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/fasta_concatenate_by_species |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/fasta_concatenate_by_species |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
254 |
288 |
41122 |
41245 |
608 |
1453 |
14273 |
19773 |
97 |
119 |
2169 |
2271 |
5 |
6 |
270 |
280 |
63569 |
57834 |
1866 |
964 |
https://usegalaxy.org/published/workflow?id=1d923ce15c17b1fe |
|
|
fasta_filter_by_id |
fasta_filter_by_id |
Filter FASTA sequences by ID (DEPRECATED) |
2017-02-02 |
https://github.com/peterjc/pico_galaxy/tree/master/tools/fasta_filter_by_id |
0.0.7 |
galaxy_sequence_utils |
1.2.0 |
To update |
Fasta Manipulation, Sequence Analysis, Text Manipulation |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/fasta_filter_by_id |
https://github.com/peterjc/pico_galaxy/tree/master/tools/fasta_filter_by_id |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
fasta_filter_by_length |
fasta_filter_by_length |
Filter sequences by length |
2014-05-19 |
|
1.2 |
python |
|
To update |
Fasta Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/fasta_filter_by_length |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/fasta_filter_by_length |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
956 |
1100 |
51262 |
62177 |
1464 |
3864 |
49515 |
103992 |
263 |
309 |
4018 |
5788 |
23 |
24 |
336 |
346 |
172303 |
105131 |
5297 |
2706 |
https://dev.workflowhub.eu/workflows/1113?version=2, https://dev.workflowhub.eu/workflows/1132?version=2, https://dev.workflowhub.eu/workflows/1197?version=2, https://usegalaxy.eu/published/workflow?id=08f41680101a1a45, https://usegalaxy.eu/published/workflow?id=0e492839192d26e0, https://usegalaxy.eu/published/workflow?id=1860e02bcb894a64, https://usegalaxy.eu/published/workflow?id=8b2f53745e720d0f, https://usegalaxy.eu/published/workflow?id=98bfad0c684011e9, https://usegalaxy.eu/published/workflow?id=a018307be3563f28, https://usegalaxy.eu/published/workflow?id=bebcbd6f0ffa55c5, https://usegalaxy.eu/published/workflow?id=d2f75f70c33394ee, https://usegalaxy.org.au/published/workflow?id=9c60b83feaa22415, https://usegalaxy.org.au/published/workflow?id=b59fada651043735, https://usegalaxy.org.au/published/workflow?id=b808cd1c0090b068, https://usegalaxy.org.au/published/workflow?id=fc3c83b11f527977, https://usegalaxy.org/published/workflow?id=1708fdfd1d485434, https://usegalaxy.org/published/workflow?id=81183f40d2f3e395, https://usegalaxy.org/published/workflow?id=b097fce5358c01e5, https://usegalaxy.org/published/workflow?id=de9c2db125a5ea27, https://workflowhub.eu/workflows/1612?version=1, https://workflowhub.eu/workflows/1616?version=1, https://workflowhub.eu/workflows/1638?version=1 |
assembly/assembly-with-preprocessing, assembly/ecoli_comparison |
|
fasta_to_tabular |
fasta2tab |
FASTA-to-Tabular converter |
2014-05-19 |
|
1.1.1 |
python |
|
To update |
Fasta Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/fasta_to_tabular |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/fasta_to_tabular |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1713 |
1998 |
117694 |
125685 |
2161 |
8740 |
68214 |
195704 |
282 |
354 |
5750 |
7961 |
35 |
37 |
884 |
903 |
330253 |
192542 |
11129 |
4191 |
https://dev.workflowhub.eu/workflows/1026?version=1, https://dev.workflowhub.eu/workflows/1042?version=1, https://dev.workflowhub.eu/workflows/1077?version=2, https://dev.workflowhub.eu/workflows/1091?version=1, https://dev.workflowhub.eu/workflows/1199?version=2, https://dev.workflowhub.eu/workflows/1201?version=2, https://dev.workflowhub.eu/workflows/1204?version=2, https://dev.workflowhub.eu/workflows/1240?version=1, https://dev.workflowhub.eu/workflows/1354?version=1, https://dev.workflowhub.eu/workflows/1369?version=1, https://dev.workflowhub.eu/workflows/1386?version=1, https://dev.workflowhub.eu/workflows/1398?version=1, https://usegalaxy.eu/published/workflow?id=03e52c8c71710cae, https://usegalaxy.eu/published/workflow?id=0aee7ffa5f6384bd, https://usegalaxy.eu/published/workflow?id=0ed8817a90caa2b1, https://usegalaxy.eu/published/workflow?id=1031e4c4f18e020e, https://usegalaxy.eu/published/workflow?id=152223c8aed27357, https://usegalaxy.eu/published/workflow?id=17916f0229e3c868, https://usegalaxy.eu/published/workflow?id=1f88311a8e365c17, https://usegalaxy.eu/published/workflow?id=2b888e200dfd91bc, https://usegalaxy.eu/published/workflow?id=376119528377a3ae, https://usegalaxy.eu/published/workflow?id=3a8150c81b90a3a7, https://usegalaxy.eu/published/workflow?id=41e9882300fa2386, https://usegalaxy.eu/published/workflow?id=47a0407867a90f95, https://usegalaxy.eu/published/workflow?id=585c21b7b1d864fc, https://usegalaxy.eu/published/workflow?id=5e1b048040ea7535, https://usegalaxy.eu/published/workflow?id=607ca3a9d45bd080, https://usegalaxy.eu/published/workflow?id=6e5f0d05c91876c2, https://usegalaxy.eu/published/workflow?id=77e5bbd317750915, https://usegalaxy.eu/published/workflow?id=7c80cd57b2de54d4, https://usegalaxy.eu/published/workflow?id=7dd7908f4c8d722a, https://usegalaxy.eu/published/workflow?id=8af41219411062ad, https://usegalaxy.eu/published/workflow?id=8c7958cb05fba814, https://usegalaxy.eu/published/workflow?id=912b81c444e35045, https://usegalaxy.eu/published/workflow?id=933ab5e7fe13a8e0, https://usegalaxy.eu/published/workflow?id=9382f9bbbdddb5ad, https://usegalaxy.eu/published/workflow?id=9a8b5e99ca9500e3, https://usegalaxy.eu/published/workflow?id=a7638e7f908fd90d, https://usegalaxy.eu/published/workflow?id=ab89c61db3d7abbb, https://usegalaxy.eu/published/workflow?id=b51559006f86db9e, https://usegalaxy.eu/published/workflow?id=b89cf3cb6a25c999, https://usegalaxy.eu/published/workflow?id=bebcbd6f0ffa55c5, https://usegalaxy.eu/published/workflow?id=c4119ea7ffd29094, https://usegalaxy.eu/published/workflow?id=c696b37d1bf68e9b, https://usegalaxy.eu/published/workflow?id=c8bc4af6dd3b5d02, https://usegalaxy.eu/published/workflow?id=d2a9d4eb5b3c72a2, https://usegalaxy.eu/published/workflow?id=eb54512829d8509c, https://usegalaxy.eu/published/workflow?id=edea08c943ff9c5e, https://usegalaxy.eu/published/workflow?id=f6a763951d815944, https://usegalaxy.org.au/published/workflow?id=084bb76cf47d7060, https://usegalaxy.org.au/published/workflow?id=0ebaaecf61dfc921, https://usegalaxy.org.au/published/workflow?id=157e7614ae18849b, https://usegalaxy.org.au/published/workflow?id=1727d16fa4dec19c, https://usegalaxy.org.au/published/workflow?id=5cfea39918e8632d, https://usegalaxy.org.au/published/workflow?id=65a659982f955743, https://usegalaxy.org.au/published/workflow?id=7cd4fcc8e06ce4fd, https://usegalaxy.org.au/published/workflow?id=7cddb345877f08bf, https://usegalaxy.org.au/published/workflow?id=b60922a253df6654, https://usegalaxy.org.au/published/workflow?id=ba217a34d7e1b5ee, https://usegalaxy.org.au/published/workflow?id=eda40b58616a0fe4, https://usegalaxy.org.au/published/workflow?id=ef8c22c2525063a2, https://usegalaxy.org/published/workflow?id=1708fdfd1d485434, https://usegalaxy.org/published/workflow?id=19c9c8cc3c813bda, https://usegalaxy.org/published/workflow?id=1a6f552cfe798883, https://usegalaxy.org/published/workflow?id=1d923ce15c17b1fe, https://usegalaxy.org/published/workflow?id=1efb485f123233eb, https://usegalaxy.org/published/workflow?id=23bca854e549ad48, https://usegalaxy.org/published/workflow?id=2823322fa85c7ae1, https://usegalaxy.org/published/workflow?id=2d1d69aac67a387a, https://usegalaxy.org/published/workflow?id=2d3063882d8239ff, https://usegalaxy.org/published/workflow?id=2e92cca68b7979f6, https://usegalaxy.org/published/workflow?id=2f7638035fb889ac, https://usegalaxy.org/published/workflow?id=3c7349268d74c576, https://usegalaxy.org/published/workflow?id=3ef08553982f6ffc, https://usegalaxy.org/published/workflow?id=3f252e077e0bcce5, https://usegalaxy.org/published/workflow?id=49ca77212cc56ef9, https://usegalaxy.org/published/workflow?id=52cc435f50a6ff29, https://usegalaxy.org/published/workflow?id=52e099f693639115, https://usegalaxy.org/published/workflow?id=55aa743125c2465d, https://usegalaxy.org/published/workflow?id=59347cc210c4cdbc, https://usegalaxy.org/published/workflow?id=5c7f3d73543da895, https://usegalaxy.org/published/workflow?id=5e079a9ac49a5b8c, https://usegalaxy.org/published/workflow?id=63db7f52a280bd2d, https://usegalaxy.org/published/workflow?id=66bc5f6d71466b7f, https://usegalaxy.org/published/workflow?id=6a3e47124e32e260, https://usegalaxy.org/published/workflow?id=6b5e56d23387e953, https://usegalaxy.org/published/workflow?id=6c7d320ad951f445, https://usegalaxy.org/published/workflow?id=7294f75ad01ca7ed, https://usegalaxy.org/published/workflow?id=74fe080f24f7da84, https://usegalaxy.org/published/workflow?id=80afe572b6693ca1, https://usegalaxy.org/published/workflow?id=81183f40d2f3e395, https://usegalaxy.org/published/workflow?id=85d825931edf4a64, https://usegalaxy.org/published/workflow?id=85dc651884b93cf5, https://usegalaxy.org/published/workflow?id=896d29573ea3e574, https://usegalaxy.org/published/workflow?id=8d8e8927d63803ef, https://usegalaxy.org/published/workflow?id=9304cc9410a96323, https://usegalaxy.org/published/workflow?id=a808c139402d7b87, https://usegalaxy.org/published/workflow?id=b4f04171e8de02ce, https://usegalaxy.org/published/workflow?id=bb8609e8d2d4bd89, https://usegalaxy.org/published/workflow?id=c74a01ba2f2a80d3, https://usegalaxy.org/published/workflow?id=c88fe3dc11bc4905, https://usegalaxy.org/published/workflow?id=cce88bc57b180d09, https://usegalaxy.org/published/workflow?id=d851f8436497dd1c, https://usegalaxy.org/published/workflow?id=e336bca259abd474, https://usegalaxy.org/published/workflow?id=e4f1cce653812a22, https://usegalaxy.org/published/workflow?id=e75bd7d392e65209, https://usegalaxy.org/published/workflow?id=e97da2da9e0290a7, https://usegalaxy.org/published/workflow?id=eeffba361f12a22d, https://workflowhub.eu/workflows/1060?version=1, https://workflowhub.eu/workflows/1062?version=1, https://workflowhub.eu/workflows/1225?version=1, https://workflowhub.eu/workflows/1396?version=1, https://workflowhub.eu/workflows/1407?version=1, https://workflowhub.eu/workflows/1426?version=1, https://workflowhub.eu/workflows/1434?version=1, https://workflowhub.eu/workflows/1435?version=1, https://workflowhub.eu/workflows/1437?version=1, https://workflowhub.eu/workflows/1438?version=1, https://workflowhub.eu/workflows/1487?version=2, https://workflowhub.eu/workflows/1495?version=1, https://workflowhub.eu/workflows/1767?version=1, https://workflowhub.eu/workflows/1788?version=1, https://workflowhub.eu/workflows/880?version=1 |
microbiome/clinical-mp-2-discovery, microbiome/pathogen-detection-from-nanopore-foodborne-data, proteomics/clinical-mp-2-discovery, proteomics/database-handling, proteomics/maxquant-msstats-dda-lfq, proteomics/neoantigen-non-reference-database-generation, proteomics/proteogenomics-dbcreation |
|
fastq_filter_by_id |
fastq_filter_by_id |
Filter FASTQ sequences by ID (DEPRECATED) |
2017-02-02 |
https://github.com/peterjc/pico_galaxy/tree/master/tools/fastq_filter_by_id |
0.0.7 |
galaxy_sequence_utils |
1.2.0 |
To update |
Fastq Manipulation, Sequence Analysis, Text Manipulation |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/fastq_filter_by_id |
https://github.com/peterjc/pico_galaxy/tree/master/tools/fastq_filter_by_id |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
fastq_info |
fastq_info |
FASTQ info allows to validate single or paired fastq files |
2021-09-12 |
https://github.com/nunofonseca/fastq_utils |
0.25.1 |
fastq_utils |
0.25.3 |
To update |
Fastq Manipulation |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/fastq_info |
https://github.com/bgruening/galaxytools/tree/master/tools/fastq_info |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
1502 |
1502 |
15141 |
15141 |
1952 |
1952 |
8408 |
8408 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
23549 |
23549 |
3454 |
3454 |
https://usegalaxy.org/published/workflow?id=eb4b32fcf4a9f64a |
|
|
fastq_pair_names |
fastq_pair_names |
Extract FASTQ paired read names |
2014-05-05 |
https://github.com/peterjc/pico_galaxy/tree/master/tools/fastq_pair_names |
0.0.5 |
galaxy_sequence_utils |
1.2.0 |
To update |
Sequence Analysis |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/fastq_pair_names |
https://github.com/peterjc/pico_galaxy/tree/master/tools/fastq_pair_names |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
fastq_paired_unpaired |
fastq_paired_unpaired |
Divide FASTQ file into paired and unpaired reads |
2013-09-26 |
https://github.com/peterjc/pico_galaxy/tree/master/tools/fastq_paired_unpaired |
0.1.5 |
galaxy_sequence_utils |
1.2.0 |
To update |
Sequence Analysis, Text Manipulation |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/fastq_paired_unpaired |
https://github.com/peterjc/pico_galaxy/tree/master/tools/fastq_paired_unpaired |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
fastq_trimmer_by_quality |
fastq_quality_trimmer |
FASTQ Quality Trimmer by sliding window |
2014-01-27 |
|
1.1.5 |
galaxy_sequence_utils |
1.2.0 |
To update |
Fastq Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastq_trimmer_by_quality |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/fastq_trimmer_by_quality |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
984 |
1146 |
5468 |
7027 |
3351 |
11668 |
28522 |
100961 |
259 |
360 |
2229 |
2900 |
104 |
104 |
281 |
281 |
111169 |
36500 |
13278 |
4698 |
https://usegalaxy.eu/published/workflow?id=b6eb5fe7e37f680a, https://usegalaxy.org.au/published/workflow?id=0fc7c14c4d1ac8f5, https://usegalaxy.org.au/published/workflow?id=427e27f87b8048a3, https://usegalaxy.org.au/published/workflow?id=8d47811c6154d347, https://usegalaxy.org.au/published/workflow?id=9176f8ebac92d10c, https://usegalaxy.org.au/published/workflow?id=d3989c6c2c663cd3, https://usegalaxy.org/published/workflow?id=1cd08f3549cf5589, https://usegalaxy.org/published/workflow?id=1d1ee1fad4e20eeb, https://usegalaxy.org/published/workflow?id=3767c9c07462b777, https://usegalaxy.org/published/workflow?id=3fbaa9ae67362495, https://usegalaxy.org/published/workflow?id=4b7e73bb7ac93c95, https://usegalaxy.org/published/workflow?id=61d324b1eca6300e, https://usegalaxy.org/published/workflow?id=712d9ae42b45c4b9, https://usegalaxy.org/published/workflow?id=7253824f78a90431, https://usegalaxy.org/published/workflow?id=73d98e5f821a78b3, https://usegalaxy.org/published/workflow?id=81183f40d2f3e395, https://usegalaxy.org/published/workflow?id=c64719e91e7346a2, https://usegalaxy.org/published/workflow?id=d69ea491b99016f4, https://usegalaxy.org/published/workflow?id=d89e626fa4f9434f, https://usegalaxy.org/published/workflow?id=e2fa6584853a0dee, https://usegalaxy.org/published/workflow?id=ea69f4fbdbb88c71 |
|
|
fastqsolexa_to_fasta_qual |
fastqsolexa_to_fasta_qual |
FASTQSOLEXA-to-FASTA-QUAL extracts sequences and quality scores from FASTQSOLEXA data |
2014-05-19 |
|
1.0.0 |
|
|
To update |
Convert Formats, Fastq Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqsolexa_to_fasta_qual |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/fastqsolexa_to_fasta_qual |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
8 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8 |
0 |
3 |
0 |
|
|
|
featurecounter |
featureCoverage1 |
Feature coverage |
2014-04-01 |
|
2.0.0 |
bx-python |
0.14.0 |
To update |
Sequence Analysis, Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/featurecounter |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/featurecounter |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
16 |
20 |
22289 |
22389 |
53 |
349 |
311 |
13711 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
36100 |
22600 |
369 |
69 |
https://usegalaxy.org/published/workflow?id=4b52f6a8dcfc8045, https://usegalaxy.org/published/workflow?id=66748e20a243eafe |
|
|
ffmpeg |
ffmpeg_converter |
A complete, cross-platform solution to record, convert and stream audio and video. |
2025-04-21 |
https://ffmpeg.org |
0.1.0 |
ffmpeg |
|
To update |
Convert Formats |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/ffmpeg |
https://github.com/bgruening/galaxytools/tree/master/tools/ffmpeg |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
filter_transcripts_via_tracking |
filter_combined_via_tracking |
Filter Combined Transcripts |
2014-01-27 |
|
0.1 |
|
|
To update |
RNA |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/filter_transcripts_via_tracking |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/filter_transcripts_via_tracking |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
8 |
10 |
21 |
24 |
20 |
242 |
51 |
638 |
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
664 |
74 |
254 |
30 |
|
|
|
find_diag_hits |
find_diag_hits |
Find diagnostic hits |
2014-01-27 |
https://bitbucket.org/natefoo/taxonomy |
1.0.0 |
taxonomy |
0.10.1 |
To update |
Metagenomics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/taxonomy/find_diag_hits |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/taxonomy/find_diag_hits |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
9 |
12 |
51 |
70 |
1 |
204 |
3 |
1787 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1857 |
54 |
216 |
10 |
|
|
|
find_subsequences |
bg_find_subsequences |
|
2015-03-19 |
|
0.3 |
biopython |
1.70 |
To update |
|
|
|
|
|
bgruening |
|
https://github.com/bgruening/galaxytools/tree/master/tools/find_subsequences |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
63 |
80 |
518 |
817 |
271 |
383 |
2854 |
3449 |
3 |
3 |
134 |
134 |
0 |
0 |
0 |
0 |
4400 |
3506 |
466 |
337 |
https://dev.workflowhub.eu/workflows/1149?version=2, https://usegalaxy.eu/published/workflow?id=b86f3775aa1f13bc, https://workflowhub.eu/workflows/1530?version=1 |
genome-annotation/tnseq |
|
flanking_features |
flanking_features_1 |
Fetch closest non-overlapping feature for every interval |
2014-04-01 |
https://github.com/galaxyproject/gops |
4.0.1 |
bx-python |
0.14.0 |
To update |
Genomic Interval Operations |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/flanking_features |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/gops/flanking_features |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
50 |
64 |
542 |
761 |
279 |
2565 |
2173 |
32930 |
16 |
23 |
1256 |
1448 |
2 |
3 |
14 |
24 |
35163 |
3985 |
2655 |
347 |
https://usegalaxy.org/published/workflow?id=6471aa8abbb3fa40, https://usegalaxy.org/published/workflow?id=7bc71a005c6f18d0 |
|
|
flexynesis |
flexynesis, flexynesis_cbioportal_import, flexynesis_plot, flexynesis_utils |
This is a deep-learning based multi-omics bulk sequencing data integration suite with a focus on (pre-)clinical endpoint prediction. |
2024-08-12 |
https://github.com/BIMSBbioinfo/flexynesis/tree/main |
0.2.20 |
flexynesis |
0.2.20 |
Up-to-date |
Machine Learning, Statistics, Systems Biology |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/flexynesis |
https://github.com/bgruening/galaxytools/tree/master/tools/flexynesis |
|
|
|
|
0 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
13 |
13 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
13 |
2 |
2 |
|
|
|
flye |
flye |
Assembly of long and error-prone reads. |
2018-09-22 |
https://github.com/fenderglass/Flye/ |
2.9.6 |
flye |
2.9.6 |
Up-to-date |
Assembly |
Genome assembly, De-novo assembly, Mapping assembly, Cross-assembly |
Genome assembly, De-novo assembly, Mapping assembly, Cross-assembly |
Sequence assembly, Metagenomics, Whole genome sequencing, Genomics |
Sequence assembly, Metagenomics, Whole genome sequencing |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/flye |
https://github.com/bgruening/galaxytools/tree/master/tools/flye |
Flye |
Flye |
Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline: it takes raw PB / ONT reads as input and outputs polished contigs. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
3861 |
3923 |
38698 |
39063 |
3259 |
3259 |
24739 |
24739 |
1844 |
1848 |
11434 |
11596 |
165 |
165 |
902 |
902 |
76300 |
75773 |
9195 |
9129 |
https://dev.workflowhub.eu/workflows/1005?version=1, https://dev.workflowhub.eu/workflows/1006?version=1, https://dev.workflowhub.eu/workflows/1091?version=1, https://dev.workflowhub.eu/workflows/1131?version=2, https://dev.workflowhub.eu/workflows/1139?version=1, https://dev.workflowhub.eu/workflows/1170?version=2, https://dev.workflowhub.eu/workflows/1178?version=1, https://usegalaxy.eu/published/workflow?id=0ebfab0e957b7267, https://usegalaxy.eu/published/workflow?id=152223c8aed27357, https://usegalaxy.eu/published/workflow?id=2b888e200dfd91bc, https://usegalaxy.eu/published/workflow?id=30b514cfb9cce524, https://usegalaxy.eu/published/workflow?id=34a07bf6407510ef, https://usegalaxy.eu/published/workflow?id=4ddbffe4b3fef275, https://usegalaxy.eu/published/workflow?id=5500de2961f7470c, https://usegalaxy.eu/published/workflow?id=585c21b7b1d864fc, https://usegalaxy.eu/published/workflow?id=77e5bbd317750915, https://usegalaxy.eu/published/workflow?id=83a1b8949d87e3da, https://usegalaxy.eu/published/workflow?id=86cf02cc0868d238, https://usegalaxy.eu/published/workflow?id=8b2f53745e720d0f, https://usegalaxy.eu/published/workflow?id=968f0ac2617aa524, https://usegalaxy.eu/published/workflow?id=9ddb703e1db13504, https://usegalaxy.eu/published/workflow?id=a337bfb2eb1e583f, https://usegalaxy.eu/published/workflow?id=a84bac86ec183d46, https://usegalaxy.eu/published/workflow?id=b2dfa74f55a73409, https://usegalaxy.eu/published/workflow?id=bf48b0eb15e8ff75, https://usegalaxy.eu/published/workflow?id=c9ef2d2ce92e2dfb, https://usegalaxy.eu/published/workflow?id=cf8591391a17a914, https://usegalaxy.eu/published/workflow?id=d2f75f70c33394ee, https://usegalaxy.eu/published/workflow?id=eb5ab8bc82569eee, https://usegalaxy.org.au/published/workflow?id=02c74095a7128c9d, https://usegalaxy.org.au/published/workflow?id=084bb76cf47d7060, https://usegalaxy.org.au/published/workflow?id=1ad4c47cee851dda, https://usegalaxy.org.au/published/workflow?id=22bd45f60c60a338, https://usegalaxy.org.au/published/workflow?id=2cb16d321a804b1a, https://usegalaxy.org.au/published/workflow?id=2e29b21cdec7d0cc, https://usegalaxy.org.au/published/workflow?id=35f39173f0ac9179, https://usegalaxy.org.au/published/workflow?id=479c6b0a96ea1610, https://usegalaxy.org.au/published/workflow?id=59618ed15510f531, https://usegalaxy.org.au/published/workflow?id=5b32e2f0d390a4ba, https://usegalaxy.org.au/published/workflow?id=7c343e5b55474d19, https://usegalaxy.org.au/published/workflow?id=803ef29108e36e58, https://usegalaxy.org.au/published/workflow?id=8a40059343cf4b87, https://usegalaxy.org.au/published/workflow?id=b5403e4fff2961f9, https://usegalaxy.org.au/published/workflow?id=b6bad1f167257248, https://usegalaxy.org.au/published/workflow?id=c4d23297f6fbf5f3, https://usegalaxy.org.au/published/workflow?id=c997a34b55425155, https://usegalaxy.org.au/published/workflow?id=d832905fbaf2ca31, https://usegalaxy.org.au/published/workflow?id=ef8c22c2525063a2, https://usegalaxy.org.au/published/workflow?id=fc664a96d8099652, https://usegalaxy.org/published/workflow?id=0602c14704dbe1ff, https://usegalaxy.org/published/workflow?id=2ded909e7e3a9962, https://usegalaxy.org/published/workflow?id=3f252e077e0bcce5, https://usegalaxy.org/published/workflow?id=48dafc35989f13b1, https://usegalaxy.org/published/workflow?id=547f86db467bf620, https://usegalaxy.org/published/workflow?id=5626a440a5798458, https://usegalaxy.org/published/workflow?id=7fc8b2398b6f093f, https://usegalaxy.org/published/workflow?id=bff206b4625375bc, https://usegalaxy.org/published/workflow?id=c451e4dca9981ed0, https://usegalaxy.org/published/workflow?id=c8d74054c1820087, https://usegalaxy.org/published/workflow?id=cce88bc57b180d09, https://usegalaxy.org/published/workflow?id=e12324f5e3b930fd, https://workflowhub.eu/workflows/1062?version=1, https://workflowhub.eu/workflows/1114?version=1, https://workflowhub.eu/workflows/1495?version=1, https://workflowhub.eu/workflows/1595?version=1, https://workflowhub.eu/workflows/1613?version=1, https://workflowhub.eu/workflows/1617?version=1, https://workflowhub.eu/workflows/1621?version=1, https://workflowhub.eu/workflows/225?version=1, https://workflowhub.eu/workflows/51?version=1, https://workflowhub.eu/workflows/750?version=2, https://workflowhub.eu/workflows/788?version=1 |
assembly/chloroplast-assembly, assembly/hifi-assembly, assembly/largegenome, assembly/mrsa-nanopore, microbiome/pathogen-detection-from-nanopore-foodborne-data |
|
footprint |
footprint |
Find transcription factor footprints |
2017-04-18 |
https://ohlerlab.mdc-berlin.de/software/Reproducible_footprinting_139/ |
1.0.0 |
footprint |
1.0.1 |
To update |
Epigenetics |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/footprint |
https://github.com/bgruening/galaxytools/tree/master/tools/footprint |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
5 |
5 |
57 |
57 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
57 |
57 |
5 |
5 |
|
|
|
format_cd_hit_output |
format_cd_hit_output |
Format CD-hit output to rename representative sequences with cluster name and/or extract distribution inside clusters given a mapping file |
2022-10-19 |
|
1.0.0+galaxy1 |
|
|
To update |
Fasta Manipulation |
|
|
|
|
bebatut |
https://github.com/bgruening/galaxytools/tree/master/tools/format_cd_hit_output/ |
https://github.com/bgruening/galaxytools/tree/master/tools/format_cd_hit_output |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
62 |
66 |
219 |
244 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
244 |
219 |
66 |
62 |
|
|
|
format_metaphlan2_output |
format_metaphlan2_output |
Format MetaPhlAn2 output to extract abundance at different taxonomic levels |
2022-10-19 |
|
0.2.0 |
|
|
To update |
Metagenomics |
Formatting |
Formatting |
Taxonomy, Metagenomics |
Taxonomy, Metagenomics |
bebatut |
https://github.com/bgruening/galaxytools/tree/master/tools/format_metaphlan2_output/ |
https://github.com/bgruening/galaxytools/tree/master/tools/format_metaphlan2_output |
format_metaphlan2_output |
Format metaphlan2 output |
This tool format output file of MetaPhlan2 containing community content (abundance) at all taxonomic levels (from kingdom to strains). |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
590 |
661 |
6183 |
6878 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6878 |
6183 |
661 |
590 |
https://usegalaxy.eu/published/workflow?id=096b75501c8e0888, https://usegalaxy.eu/published/workflow?id=2cf09adb1ed6c3ec, https://usegalaxy.eu/published/workflow?id=7ab70660e6235cf0, https://usegalaxy.eu/published/workflow?id=994e5ff1df7d6c9e, https://usegalaxy.eu/published/workflow?id=9cbba5de2cbeeb0f, https://usegalaxy.eu/published/workflow?id=a8f829deb69b30ab, https://usegalaxy.eu/published/workflow?id=c3aa516e78ca4191, https://usegalaxy.eu/published/workflow?id=d05c6f0f3205fbd2, https://usegalaxy.eu/published/workflow?id=dfc2c53ac3103eff, https://usegalaxy.eu/published/workflow?id=ed0ad728cf21702b |
|
|
generate_pc_lda_matrix |
generate_matrix_for_pca_and_lda1 |
Generate a Matrix for using PC and LDA |
2014-07-28 |
|
1.0.0 |
|
|
To update |
Sequence Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/generate_pc_lda_matrix |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/generate_pc_lda_matrix |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
30 |
32 |
120 |
140 |
104 |
270 |
482 |
1057 |
14 |
17 |
190 |
220 |
2 |
2 |
2 |
2 |
1419 |
794 |
321 |
150 |
|
|
|
get_flanks |
get_flanks1 |
Get flanks returns flanking region/s for every gene |
2014-04-01 |
https://github.com/galaxyproject/gops |
1.0.0 |
bx-python |
0.14.0 |
To update |
Genomic Interval Operations |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/get_flanks |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/gops/get_flanks |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1571 |
2250 |
3815 |
325334 |
2179 |
6691 |
8758 |
242476 |
114 |
149 |
794 |
1126 |
8 |
9 |
11 |
21 |
568957 |
13378 |
9099 |
3872 |
https://dev.workflowhub.eu/workflows/1102?version=1, https://dev.workflowhub.eu/workflows/120?version=1, https://usegalaxy.eu/published/workflow?id=d2ef6d4a2189c0a6, https://usegalaxy.eu/published/workflow?id=f30c8054f064ac9f, https://usegalaxy.org.au/published/workflow?id=19e3488987d58d73, https://usegalaxy.org/published/workflow?id=013bf76cb3a8bd66, https://usegalaxy.org/published/workflow?id=4f02edb5c9bb84ab, https://usegalaxy.org/published/workflow?id=888bfce1c214ab64, https://usegalaxy.org/published/workflow?id=8a3e457a9453c313, https://usegalaxy.org/published/workflow?id=94de815260acc3a8, https://usegalaxy.org/published/workflow?id=c2b299627d2baf48, https://usegalaxy.org/published/workflow?id=f25a3da4b00eddbb, https://workflowhub.eu/workflows/1478?version=1 |
introduction/galaxy-intro-peaks2genes |
|
get_orfs_or_cdss |
get_orfs_or_cdss |
Search nucleotide sequences for open reading frames (ORFs), or coding sequences (CDSs) |
2013-09-26 |
https://github.com/peterjc/pico_galaxy/tree/master/tools/get_orfs_or_cdss |
0.2.3 |
biopython |
1.70 |
To update |
Sequence Analysis |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/get_orfs_or_cdss |
https://github.com/peterjc/pico_galaxy/tree/master/tools/get_orfs_or_cdss |
|
|
|
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
185 |
185 |
1009 |
1009 |
0 |
0 |
0 |
0 |
250 |
250 |
1605 |
1605 |
7 |
9 |
63 |
70 |
2684 |
2677 |
444 |
442 |
https://usegalaxy.eu/published/workflow?id=0b9071d5dfa38559, https://usegalaxy.eu/published/workflow?id=3dcf09e75d707573, https://usegalaxy.eu/published/workflow?id=7f6950394a8c9c4a, https://usegalaxy.eu/published/workflow?id=a1518a029132ee3d, https://usegalaxy.eu/published/workflow?id=c0f225536e78a178, https://usegalaxy.eu/published/workflow?id=df7d9943423549df, https://usegalaxy.eu/published/workflow?id=f62d7c0c7cc57eb6, https://usegalaxy.org.au/published/workflow?id=0f71c97671bb401f, https://usegalaxy.org.au/published/workflow?id=cb6f49d4ebfa0891 |
|
|
getindelrates_3way |
indelRates_3way |
Estimate Indel Rates for 3-way alignments |
2014-04-01 |
|
1.0.0 |
bx-python |
0.14.0 |
To update |
Sequence Analysis, Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/getindelrates_3way |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/getindelrates_3way |
|
|
|
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
18 |
87 |
48 |
291 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
291 |
48 |
87 |
18 |
|
|
|
getindels_2way |
getIndels_2way |
Fetch Indels from pairwise alignments |
2014-04-01 |
|
1.0.0 |
numpy |
|
To update |
Sequence Analysis, Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/getindels_2way |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/getindels_2way |
|
|
|
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
24 |
61 |
55 |
237 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
237 |
55 |
61 |
24 |
|
|
|
gfastats |
gfastats |
Tool for generating sequence statistics and simultaneous genome assembly file manipulation. |
2022-03-08 |
https://github.com/vgl-hub/gfastats |
1.3.11 |
gfastats |
1.3.11 |
Up-to-date |
Sequence Analysis |
Data handling |
Data handling |
Computational biology |
Computational biology |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/gfastats |
https://github.com/bgruening/galaxytools/tree/master/tools/gfastats |
gfastats |
gfastats |
gfastats is a single fast and exhaustive tool for summary statistics and simultaneous genome assembly file manipulation. gfastats also allows seamless fasta/fastq/gfa conversion. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
865 |
865 |
13937 |
13937 |
501 |
501 |
9026 |
9026 |
128 |
128 |
3152 |
3152 |
0 |
0 |
0 |
0 |
26115 |
26115 |
1494 |
1494 |
https://dev.workflowhub.eu/workflows/1127?version=3, https://dev.workflowhub.eu/workflows/1359?version=1, https://usegalaxy.eu/published/workflow?id=002a51bdef00e14d, https://usegalaxy.eu/published/workflow?id=012762cb4acb068b, https://usegalaxy.eu/published/workflow?id=01fe4c590e608103, https://usegalaxy.eu/published/workflow?id=023a0ee62dd1f593, https://usegalaxy.eu/published/workflow?id=032a7281a86eba0d, https://usegalaxy.eu/published/workflow?id=03bb4c20a1f4b4de, https://usegalaxy.eu/published/workflow?id=03be9d62e8e4a129, https://usegalaxy.eu/published/workflow?id=0444c98a3ca2a3ca, https://usegalaxy.eu/published/workflow?id=069d99391a69baf4, https://usegalaxy.eu/published/workflow?id=075c4126e66def01, https://usegalaxy.eu/published/workflow?id=085c3a4c89d137b5, https://usegalaxy.eu/published/workflow?id=089e5e83b1de0511, https://usegalaxy.eu/published/workflow?id=098f43ded1b5fa7f, https://usegalaxy.eu/published/workflow?id=0a3ebee985c26060, https://usegalaxy.eu/published/workflow?id=0c3ce9feb83f7920, https://usegalaxy.eu/published/workflow?id=0cf3c2114ab65858, https://usegalaxy.eu/published/workflow?id=0f044c9f62773a88, https://usegalaxy.eu/published/workflow?id=0f207a15b6f7fa10, https://usegalaxy.eu/published/workflow?id=1151052f4393852a, https://usegalaxy.eu/published/workflow?id=12a018217ee146ca, https://usegalaxy.eu/published/workflow?id=12b0bd336c76a874, https://usegalaxy.eu/published/workflow?id=1483534f49b826bf, https://usegalaxy.eu/published/workflow?id=16418e8b023ff226, https://usegalaxy.eu/published/workflow?id=194a05d42687b524, https://usegalaxy.eu/published/workflow?id=19bb57f8cfa48bb9, https://usegalaxy.eu/published/workflow?id=1ac0a15758277730, https://usegalaxy.eu/published/workflow?id=1af73dc855d0a5ed, https://usegalaxy.eu/published/workflow?id=1bb084f1bc102734, https://usegalaxy.eu/published/workflow?id=1ce406de61de8492, https://usegalaxy.eu/published/workflow?id=1d1ae39386b5c318, https://usegalaxy.eu/published/workflow?id=1da7ac8eaf891f39, https://usegalaxy.eu/published/workflow?id=1e02a7292e9974b1, https://usegalaxy.eu/published/workflow?id=1e7f4ba6261f979c, https://usegalaxy.eu/published/workflow?id=1f2a1438e41188f2, https://usegalaxy.eu/published/workflow?id=21a3f72851f29925, https://usegalaxy.eu/published/workflow?id=2294ef9515bcf972, https://usegalaxy.eu/published/workflow?id=2497292e98937a5f, https://usegalaxy.eu/published/workflow?id=2671a5f85b2cccfe, https://usegalaxy.eu/published/workflow?id=270b6f82efab28b2, https://usegalaxy.eu/published/workflow?id=2880a32a52d27743, https://usegalaxy.eu/published/workflow?id=29c97d43eeb8ed63, https://usegalaxy.eu/published/workflow?id=2c2f0b4312bae4f4, https://usegalaxy.eu/published/workflow?id=2e418c5810012e5a, https://usegalaxy.eu/published/workflow?id=2e6ed783bdf05d16, https://usegalaxy.eu/published/workflow?id=2e93613c688ea52e, https://usegalaxy.eu/published/workflow?id=3010ecad1a342331, https://usegalaxy.eu/published/workflow?id=3069c17b52decab4, https://usegalaxy.eu/published/workflow?id=309969a261189b5f, https://usegalaxy.eu/published/workflow?id=3192f92ac4d389b8, https://usegalaxy.eu/published/workflow?id=319bc351f7a8e358, https://usegalaxy.eu/published/workflow?id=31c6dcd3a25620df, https://usegalaxy.eu/published/workflow?id=31f8c7c46207432f, https://usegalaxy.eu/published/workflow?id=33a052f9a3d5551d, https://usegalaxy.eu/published/workflow?id=342a5df69951e3d7, https://usegalaxy.eu/published/workflow?id=379642036b6f5a66, https://usegalaxy.eu/published/workflow?id=389d992ff7268247, https://usegalaxy.eu/published/workflow?id=38f12705279b5dfa, https://usegalaxy.eu/published/workflow?id=399048afb4acef3d, https://usegalaxy.eu/published/workflow?id=3a3e2d50fe7a9ee3, https://usegalaxy.eu/published/workflow?id=3b57fc81001667b5, https://usegalaxy.eu/published/workflow?id=3cf3dd9727b7ac92, https://usegalaxy.eu/published/workflow?id=3d047ed984762ce8, https://usegalaxy.eu/published/workflow?id=3dec7c9b02c3d1ee, https://usegalaxy.eu/published/workflow?id=3e255a5b7026d26e, https://usegalaxy.eu/published/workflow?id=3eb6663a66f8e69a, https://usegalaxy.eu/published/workflow?id=3f5414bb38b47fcf, https://usegalaxy.eu/published/workflow?id=416141b245073406, https://usegalaxy.eu/published/workflow?id=44c92c04f1d14631, https://usegalaxy.eu/published/workflow?id=471eb8b4c54f897d, https://usegalaxy.eu/published/workflow?id=475ea16f943cc013, https://usegalaxy.eu/published/workflow?id=4856e3522b2ee059, https://usegalaxy.eu/published/workflow?id=4949751217c0e211, https://usegalaxy.eu/published/workflow?id=497b82d3b92dc076, https://usegalaxy.eu/published/workflow?id=4c3a9b574f37eebb, https://usegalaxy.eu/published/workflow?id=4d41ee83fc0040d4, https://usegalaxy.eu/published/workflow?id=5115299e77df8104, https://usegalaxy.eu/published/workflow?id=5395e76fa828c343, https://usegalaxy.eu/published/workflow?id=54590ccd11ffbf65, https://usegalaxy.eu/published/workflow?id=57cc33ed64d71982, https://usegalaxy.eu/published/workflow?id=5ad406442ec21345, https://usegalaxy.eu/published/workflow?id=5bb7691b176d1010, https://usegalaxy.eu/published/workflow?id=5bf6718e7d6158d2, https://usegalaxy.eu/published/workflow?id=5e1906290f5b4d8a, https://usegalaxy.eu/published/workflow?id=5f29105e842716db, https://usegalaxy.eu/published/workflow?id=652433160b04b232, https://usegalaxy.eu/published/workflow?id=6573f3b1606b7f09, https://usegalaxy.eu/published/workflow?id=6865f33cffca4922, https://usegalaxy.eu/published/workflow?id=69cdd404592535ec, https://usegalaxy.eu/published/workflow?id=6c14b08a7ef7e79a, https://usegalaxy.eu/published/workflow?id=700fa3ab11a8f3e2, https://usegalaxy.eu/published/workflow?id=71a6d128a09210f0, https://usegalaxy.eu/published/workflow?id=7337d15d121596da, https://usegalaxy.eu/published/workflow?id=792b24fc23bd3071, https://usegalaxy.eu/published/workflow?id=79b5afb125e3c3da, https://usegalaxy.eu/published/workflow?id=7b4a9aebb09b51ca, https://usegalaxy.eu/published/workflow?id=7e383fe34031a9d0, https://usegalaxy.eu/published/workflow?id=7e68cf8a67efa8e9, https://usegalaxy.eu/published/workflow?id=83a1b8949d87e3da, https://usegalaxy.eu/published/workflow?id=84236d781f7dd2ad, https://usegalaxy.eu/published/workflow?id=847403b72dd346ff, https://usegalaxy.eu/published/workflow?id=8a14cda6140acab7, https://usegalaxy.eu/published/workflow?id=8be366ad6a42408b, https://usegalaxy.eu/published/workflow?id=8c7e972020799d57, https://usegalaxy.eu/published/workflow?id=8d00a8b70b0c019c, https://usegalaxy.eu/published/workflow?id=8d64614d1971065a, https://usegalaxy.eu/published/workflow?id=8f105de48f7f1d9d, https://usegalaxy.eu/published/workflow?id=915ffef5b14c871e, https://usegalaxy.eu/published/workflow?id=92760fc19ef120ce, https://usegalaxy.eu/published/workflow?id=92dafb3d1c06e074, https://usegalaxy.eu/published/workflow?id=9588311136ac8794, https://usegalaxy.eu/published/workflow?id=95f420d8856bf725, https://usegalaxy.eu/published/workflow?id=9667bf36217083b7, https://usegalaxy.eu/published/workflow?id=9aa290ce1927d700, https://usegalaxy.eu/published/workflow?id=9c0b67496dfe52b2, https://usegalaxy.eu/published/workflow?id=9c5a0596956064a6, https://usegalaxy.eu/published/workflow?id=9d209bcdae1a475e, https://usegalaxy.eu/published/workflow?id=9f2d18f0d0896e8b, https://usegalaxy.eu/published/workflow?id=a2daeb488bee0152, https://usegalaxy.eu/published/workflow?id=a37d1e0db16cfb67, https://usegalaxy.eu/published/workflow?id=a3f082ff30357040, https://usegalaxy.eu/published/workflow?id=a53f78aa6866b811, https://usegalaxy.eu/published/workflow?id=a6dd62ab4b9a0725, https://usegalaxy.eu/published/workflow?id=aa6dc57f5c67fb4b, https://usegalaxy.eu/published/workflow?id=aada0111f835ce49, https://usegalaxy.eu/published/workflow?id=ac6eb99f70d35999, https://usegalaxy.eu/published/workflow?id=ade6f36f6a035a73, https://usegalaxy.eu/published/workflow?id=ae74f60cd20d56bc, https://usegalaxy.eu/published/workflow?id=aef62f4d0bba003b, https://usegalaxy.eu/published/workflow?id=b211fceaecf41c9e, https://usegalaxy.eu/published/workflow?id=b287bb779cf686ef, https://usegalaxy.eu/published/workflow?id=b4948afacccfefdb, https://usegalaxy.eu/published/workflow?id=b5de94e9cde071ab, https://usegalaxy.eu/published/workflow?id=b8baade87e733fce, https://usegalaxy.eu/published/workflow?id=bac84a7033c3423f, https://usegalaxy.eu/published/workflow?id=bb13f30a5562d30d, https://usegalaxy.eu/published/workflow?id=bc32937d505135ab, https://usegalaxy.eu/published/workflow?id=bc87309a8763d0b4, https://usegalaxy.eu/published/workflow?id=bc8ccd13a07bd9ec, https://usegalaxy.eu/published/workflow?id=bcf99cc0469db276, https://usegalaxy.eu/published/workflow?id=bef0a7d604f2ebef, https://usegalaxy.eu/published/workflow?id=c4c2e669b86cffbc, https://usegalaxy.eu/published/workflow?id=c4fc3adf8f7ff2bc, https://usegalaxy.eu/published/workflow?id=c508c00e81018dd8, https://usegalaxy.eu/published/workflow?id=c8f94a2e838fc0f1, https://usegalaxy.eu/published/workflow?id=ca39822372847670, https://usegalaxy.eu/published/workflow?id=cab2aa791a814d55, https://usegalaxy.eu/published/workflow?id=caba6d3d7db648e9, https://usegalaxy.eu/published/workflow?id=cc2bc81352d2e2cd, https://usegalaxy.eu/published/workflow?id=cc385bd4376a907c, https://usegalaxy.eu/published/workflow?id=d02458f1d7d9c3f4, https://usegalaxy.eu/published/workflow?id=d172f927a489e9f8, https://usegalaxy.eu/published/workflow?id=d17d6029914d666b, https://usegalaxy.eu/published/workflow?id=d1bd5d8597c1d31d, https://usegalaxy.eu/published/workflow?id=d261bbd05889ce75, https://usegalaxy.eu/published/workflow?id=d649ec485c4b3994, https://usegalaxy.eu/published/workflow?id=d924fafd8e042952, https://usegalaxy.eu/published/workflow?id=dc27453c438577f6, https://usegalaxy.eu/published/workflow?id=de9cf573314f416c, https://usegalaxy.eu/published/workflow?id=e138640778b7414c, https://usegalaxy.eu/published/workflow?id=e7aebe58411d97ed, https://usegalaxy.eu/published/workflow?id=e8f9e1d911683b22, https://usegalaxy.eu/published/workflow?id=e935d2c8ffb52588, https://usegalaxy.eu/published/workflow?id=ec6b2c926fffab5f, https://usegalaxy.eu/published/workflow?id=ec79f14ab91cd933, https://usegalaxy.eu/published/workflow?id=efb58bba65393347, https://usegalaxy.eu/published/workflow?id=f08b29e4cef76cd5, https://usegalaxy.eu/published/workflow?id=f1ca4289ee4f67bb, https://usegalaxy.eu/published/workflow?id=f38745208494d4ab, https://usegalaxy.eu/published/workflow?id=f3e17c8dd80def27, https://usegalaxy.eu/published/workflow?id=f578a097b4339025, https://usegalaxy.eu/published/workflow?id=f63127675a07e00a, https://usegalaxy.eu/published/workflow?id=f6a625946dea60fa, https://usegalaxy.eu/published/workflow?id=f6bd10486a0ba17d, https://usegalaxy.eu/published/workflow?id=f7cdaf862e6599c0, https://usegalaxy.eu/published/workflow?id=f882d14fc5dabbb9, https://usegalaxy.eu/published/workflow?id=f91245e580319e65, https://usegalaxy.eu/published/workflow?id=fb015e398373ea8a, https://usegalaxy.eu/published/workflow?id=fc25c1f8c6667c87, https://usegalaxy.eu/published/workflow?id=fd649ac4d4872c81, https://usegalaxy.eu/published/workflow?id=feeb1fa358ccf328, https://usegalaxy.org.au/published/workflow?id=000c2f1884bc4687, https://usegalaxy.org.au/published/workflow?id=02eebe3d909206ab, https://usegalaxy.org.au/published/workflow?id=02f2a556e77eed14, https://usegalaxy.org.au/published/workflow?id=06564b19b0655c19, https://usegalaxy.org.au/published/workflow?id=0810be3d7d2b0322, https://usegalaxy.org.au/published/workflow?id=08fac3b4c128e597, https://usegalaxy.org.au/published/workflow?id=094655df3ccd0b00, https://usegalaxy.org.au/published/workflow?id=0aa316f8c6cff444, https://usegalaxy.org.au/published/workflow?id=0af0ea50f1237952, https://usegalaxy.org.au/published/workflow?id=0c11e1ba5e8fa21b, https://usegalaxy.org.au/published/workflow?id=0cc8c8875df6bccb, https://usegalaxy.org.au/published/workflow?id=0dbb85f727302a72, https://usegalaxy.org.au/published/workflow?id=0df25e2dbd5e8ed5, https://usegalaxy.org.au/published/workflow?id=0edb9c8b767fa74b, https://usegalaxy.org.au/published/workflow?id=10355b2680374a03, https://usegalaxy.org.au/published/workflow?id=11f1564f2bd815d8, https://usegalaxy.org.au/published/workflow?id=1905ec04d5841f09, https://usegalaxy.org.au/published/workflow?id=1ce2a725df3adb74, https://usegalaxy.org.au/published/workflow?id=1dcc1b25c9091fbf, https://usegalaxy.org.au/published/workflow?id=1eb3e1452c672480, https://usegalaxy.org.au/published/workflow?id=1f49c65625b9d2de, https://usegalaxy.org.au/published/workflow?id=2356584eac7fa234, https://usegalaxy.org.au/published/workflow?id=2470cb61ba51288c, https://usegalaxy.org.au/published/workflow?id=29f0c07c8a24b542, https://usegalaxy.org.au/published/workflow?id=2d45d7138d8715b4, https://usegalaxy.org.au/published/workflow?id=2fee25e188531691, https://usegalaxy.org.au/published/workflow?id=319e9d693fac8dce, https://usegalaxy.org.au/published/workflow?id=328adfa7d90b1d54, https://usegalaxy.org.au/published/workflow?id=3604307ec2835628, https://usegalaxy.org.au/published/workflow?id=36f54eda8568355d, https://usegalaxy.org.au/published/workflow?id=371c9892d261cee2, https://usegalaxy.org.au/published/workflow?id=3b6e9f03b088bf01, https://usegalaxy.org.au/published/workflow?id=3d47e0de658b3304, https://usegalaxy.org.au/published/workflow?id=3df7f45b7b388f8c, https://usegalaxy.org.au/published/workflow?id=4047f9f242542716, https://usegalaxy.org.au/published/workflow?id=40666ceb68d101ac, https://usegalaxy.org.au/published/workflow?id=40740c32b9a550c9, https://usegalaxy.org.au/published/workflow?id=41282d51f9112552, https://usegalaxy.org.au/published/workflow?id=41795303a88d9e94, https://usegalaxy.org.au/published/workflow?id=4267bd1e4cfd1901, https://usegalaxy.org.au/published/workflow?id=446ba22c3d2f3367, https://usegalaxy.org.au/published/workflow?id=455e68f185fec41b, https://usegalaxy.org.au/published/workflow?id=466809eb3392f7fb, https://usegalaxy.org.au/published/workflow?id=499245b3a113e06d, https://usegalaxy.org.au/published/workflow?id=4cb69c84b73ea9dd, https://usegalaxy.org.au/published/workflow?id=4e7930c7286c6e9e, https://usegalaxy.org.au/published/workflow?id=4ea1049371de111c, https://usegalaxy.org.au/published/workflow?id=4ebf1297793870e7, https://usegalaxy.org.au/published/workflow?id=518d27f68e05a356, https://usegalaxy.org.au/published/workflow?id=51bad198f1fd1215, https://usegalaxy.org.au/published/workflow?id=53cbacc71790c41b, https://usegalaxy.org.au/published/workflow?id=543fb2d9431a7e13, https://usegalaxy.org.au/published/workflow?id=5550585ffc3d8d0e, https://usegalaxy.org.au/published/workflow?id=5b0c0e34394afed1, https://usegalaxy.org.au/published/workflow?id=5f4f874e49515555, https://usegalaxy.org.au/published/workflow?id=5fb44f257e445f56, https://usegalaxy.org.au/published/workflow?id=60c0dec52cdca708, https://usegalaxy.org.au/published/workflow?id=63789b6f82172679, https://usegalaxy.org.au/published/workflow?id=66e530368fd40abd, https://usegalaxy.org.au/published/workflow?id=68b2961117e62890, https://usegalaxy.org.au/published/workflow?id=6c1c11a81a2ab1b8, https://usegalaxy.org.au/published/workflow?id=6c27019d03dd49d8, https://usegalaxy.org.au/published/workflow?id=6c9129acb9d98afe, https://usegalaxy.org.au/published/workflow?id=6de8899c40a90b98, https://usegalaxy.org.au/published/workflow?id=6ec5728eec9c26d7, https://usegalaxy.org.au/published/workflow?id=6f76c43e6d2d7f74, https://usegalaxy.org.au/published/workflow?id=7028436ef03171cc, https://usegalaxy.org.au/published/workflow?id=7168c01be9997823, https://usegalaxy.org.au/published/workflow?id=73565f6cb4136370, https://usegalaxy.org.au/published/workflow?id=77b2fcf8c805ad5d, https://usegalaxy.org.au/published/workflow?id=7909da83448d8bf4, https://usegalaxy.org.au/published/workflow?id=79bf7b0f5e9052d7, https://usegalaxy.org.au/published/workflow?id=7a97e8ccc332c1e8, https://usegalaxy.org.au/published/workflow?id=8034bd0690b4cbe8, https://usegalaxy.org.au/published/workflow?id=81a5b96452c71a52, https://usegalaxy.org.au/published/workflow?id=82d0876385b5ac60, https://usegalaxy.org.au/published/workflow?id=83441e3de699d157, https://usegalaxy.org.au/published/workflow?id=868775ef66d174a5, https://usegalaxy.org.au/published/workflow?id=86eb0ea9dc230f04, https://usegalaxy.org.au/published/workflow?id=87bbf9408b3f2a32, https://usegalaxy.org.au/published/workflow?id=8926e592f2e60863, https://usegalaxy.org.au/published/workflow?id=897a1255cef5c310, https://usegalaxy.org.au/published/workflow?id=8a6233015db6dd24, https://usegalaxy.org.au/published/workflow?id=8bf8c9929249f37d, https://usegalaxy.org.au/published/workflow?id=8dd86497bc15d981, https://usegalaxy.org.au/published/workflow?id=8e8a5cce9f3f2f67, https://usegalaxy.org.au/published/workflow?id=9016b2be61f89053, https://usegalaxy.org.au/published/workflow?id=91ee716be8bfd508, https://usegalaxy.org.au/published/workflow?id=9642aadb83c4f752, https://usegalaxy.org.au/published/workflow?id=970dc0d8bd74707f, https://usegalaxy.org.au/published/workflow?id=97e55a900db3863b, https://usegalaxy.org.au/published/workflow?id=9804030358c3f844, https://usegalaxy.org.au/published/workflow?id=98d3def7da131b4c, https://usegalaxy.org.au/published/workflow?id=98f660971010d11d, https://usegalaxy.org.au/published/workflow?id=9e0bae0505ee7c07, https://usegalaxy.org.au/published/workflow?id=a02c102e179596cb, https://usegalaxy.org.au/published/workflow?id=a1015b83baa0eb6d, https://usegalaxy.org.au/published/workflow?id=a209f43d8a3cc853, https://usegalaxy.org.au/published/workflow?id=a345bf84eb9bf6b2, https://usegalaxy.org.au/published/workflow?id=a40dadc943a0db1e, https://usegalaxy.org.au/published/workflow?id=a525966251895f8a, https://usegalaxy.org.au/published/workflow?id=a740543c4e9808f1, https://usegalaxy.org.au/published/workflow?id=ac8bdc5a0b2d70cd, https://usegalaxy.org.au/published/workflow?id=ad10cd704268dcf0, https://usegalaxy.org.au/published/workflow?id=ae2a397837b232b1, https://usegalaxy.org.au/published/workflow?id=ae6a03240680712a, https://usegalaxy.org.au/published/workflow?id=afab89bc468da8b3, https://usegalaxy.org.au/published/workflow?id=b19fa49405117317, https://usegalaxy.org.au/published/workflow?id=b1f45d2f8d8343e9, https://usegalaxy.org.au/published/workflow?id=b310af289ada88bc, https://usegalaxy.org.au/published/workflow?id=b5131e3a0ef2676e, https://usegalaxy.org.au/published/workflow?id=b53f82aaf32fbaa9, https://usegalaxy.org.au/published/workflow?id=b9e89401313a0cca, https://usegalaxy.org.au/published/workflow?id=b9faf6a3f48fc11b, https://usegalaxy.org.au/published/workflow?id=bcb0be4f4a0e369f, https://usegalaxy.org.au/published/workflow?id=be35847680078c90, https://usegalaxy.org.au/published/workflow?id=be96bb47b6d6435a, https://usegalaxy.org.au/published/workflow?id=c556c2270200801d, https://usegalaxy.org.au/published/workflow?id=c6a71573a299eb3a, https://usegalaxy.org.au/published/workflow?id=c7e1f666a3366823, https://usegalaxy.org.au/published/workflow?id=c7f2d6490128dc3c, https://usegalaxy.org.au/published/workflow?id=c853aa707fcddf4e, https://usegalaxy.org.au/published/workflow?id=c92fead7c30c7497, https://usegalaxy.org.au/published/workflow?id=cac0b8a09d59044b, https://usegalaxy.org.au/published/workflow?id=cbf022e349d726d9, https://usegalaxy.org.au/published/workflow?id=cf775b8ff0745456, https://usegalaxy.org.au/published/workflow?id=d298edda13b382e7, https://usegalaxy.org.au/published/workflow?id=d2dcd3b54e5082a6, https://usegalaxy.org.au/published/workflow?id=d417e920ff97e4c1, https://usegalaxy.org.au/published/workflow?id=d42d7b1aa47e870f, https://usegalaxy.org.au/published/workflow?id=d720c98f7227b6d5, https://usegalaxy.org.au/published/workflow?id=d7f3fc810261e419, https://usegalaxy.org.au/published/workflow?id=d83d5ecf31c20490, https://usegalaxy.org.au/published/workflow?id=d9c181fd954b629a, https://usegalaxy.org.au/published/workflow?id=df4e186069552649, https://usegalaxy.org.au/published/workflow?id=e031af90daa2cadf, https://usegalaxy.org.au/published/workflow?id=e07866576cc2f467, https://usegalaxy.org.au/published/workflow?id=e28ca83f14f4ede5, https://usegalaxy.org.au/published/workflow?id=e6552643a3713b50, https://usegalaxy.org.au/published/workflow?id=ea687c5613fcce27, https://usegalaxy.org.au/published/workflow?id=ea98be0f99aaceb9, https://usegalaxy.org.au/published/workflow?id=ecfb8a08e5a40e15, https://usegalaxy.org.au/published/workflow?id=f06370394b061e08, https://usegalaxy.org.au/published/workflow?id=f53d8ade897b3f46, https://usegalaxy.org.au/published/workflow?id=f7a866159f1eaecf, https://usegalaxy.org.au/published/workflow?id=f895914e322c8b77, https://usegalaxy.org.au/published/workflow?id=fa37223950a91f34, https://usegalaxy.org.au/published/workflow?id=fdec6e2fcd5e2cf5, https://usegalaxy.org.au/published/workflow?id=fe1e7fa0bc437ed8, https://usegalaxy.org.au/published/workflow?id=fea0e6c02c2f6274, https://usegalaxy.org.au/published/workflow?id=fff2e49bc90e38ca, https://usegalaxy.org/published/workflow?id=07e873a6d75dfe9f, https://usegalaxy.org/published/workflow?id=0993daadf2db5f51, https://usegalaxy.org/published/workflow?id=10d5e195501603bc, https://usegalaxy.org/published/workflow?id=1245e9435cbc3985, https://usegalaxy.org/published/workflow?id=137d0f05a71d7acb, https://usegalaxy.org/published/workflow?id=1473cdcbd664d147, https://usegalaxy.org/published/workflow?id=155839aeb6340f54, https://usegalaxy.org/published/workflow?id=1b434bfc3aac0022, https://usegalaxy.org/published/workflow?id=1b80302437db5937, https://usegalaxy.org/published/workflow?id=1d24cc949c52e475, https://usegalaxy.org/published/workflow?id=1e264fc06d87899f, https://usegalaxy.org/published/workflow?id=1ea88ca80a7f0038, https://usegalaxy.org/published/workflow?id=1eec2586d1ff908b, https://usegalaxy.org/published/workflow?id=237ca9f36ca266e7, https://usegalaxy.org/published/workflow?id=23eeee48217654d4, https://usegalaxy.org/published/workflow?id=242ef2e9dee35702, https://usegalaxy.org/published/workflow?id=25a9f0693ff6d327, https://usegalaxy.org/published/workflow?id=283bc048cc7a80f5, https://usegalaxy.org/published/workflow?id=284150bb1f296378, https://usegalaxy.org/published/workflow?id=28dbbfb3d480f4b1, https://usegalaxy.org/published/workflow?id=28ddea356ae57da1, https://usegalaxy.org/published/workflow?id=2b41752b8518a87b, https://usegalaxy.org/published/workflow?id=2c5c627c08563398, https://usegalaxy.org/published/workflow?id=2d994cc02ec05ede, https://usegalaxy.org/published/workflow?id=2f1469dab87a3649, https://usegalaxy.org/published/workflow?id=305fb9f84b053713, https://usegalaxy.org/published/workflow?id=3179c157fa5a2fdd, https://usegalaxy.org/published/workflow?id=31a6145b0832fa48, https://usegalaxy.org/published/workflow?id=325783f21bc5fef6, https://usegalaxy.org/published/workflow?id=349f1bcdbc84045f, https://usegalaxy.org/published/workflow?id=3753dcca4100e976, https://usegalaxy.org/published/workflow?id=3ba73f679558017c, https://usegalaxy.org/published/workflow?id=3d805d7e0f34c727, https://usegalaxy.org/published/workflow?id=3db4eb1ecb588d44, https://usegalaxy.org/published/workflow?id=3db51822f04f4ff7, https://usegalaxy.org/published/workflow?id=3f7550d5d2bf0b96, https://usegalaxy.org/published/workflow?id=408c799822cbf6ea, https://usegalaxy.org/published/workflow?id=426358bd988cb39d, https://usegalaxy.org/published/workflow?id=435f0340bf00c940, https://usegalaxy.org/published/workflow?id=44781c8b0bd667ed, https://usegalaxy.org/published/workflow?id=44bcae0e352563f9, https://usegalaxy.org/published/workflow?id=450c2181f89e6b23, https://usegalaxy.org/published/workflow?id=45c0b677c4920d03, https://usegalaxy.org/published/workflow?id=484f8fcf21d67376, https://usegalaxy.org/published/workflow?id=498a8c6329ca5728, https://usegalaxy.org/published/workflow?id=49a07807fcea8158, https://usegalaxy.org/published/workflow?id=49c9e8161a46667f, https://usegalaxy.org/published/workflow?id=4a0ad87aa5aa558a, https://usegalaxy.org/published/workflow?id=4bf38f5b45faa8a1, https://usegalaxy.org/published/workflow?id=4bf73376661baafd, https://usegalaxy.org/published/workflow?id=57e6345fda3e2682, https://usegalaxy.org/published/workflow?id=597c4d54f8a8ebe7, https://usegalaxy.org/published/workflow?id=5c259623a010fe77, https://usegalaxy.org/published/workflow?id=5dfec2a3ae5fa765, https://usegalaxy.org/published/workflow?id=5e38c7b36e4918ad, https://usegalaxy.org/published/workflow?id=5edabfc62f58d8cf, https://usegalaxy.org/published/workflow?id=605160c81d098703, https://usegalaxy.org/published/workflow?id=6341c384ceaf47ed, https://usegalaxy.org/published/workflow?id=653d553ac2fa51c8, https://usegalaxy.org/published/workflow?id=65ccf48b7872e36c, https://usegalaxy.org/published/workflow?id=683e725f672b7d9b, https://usegalaxy.org/published/workflow?id=6b511b47176893e3, https://usegalaxy.org/published/workflow?id=6fc7497c86ebd8ee, https://usegalaxy.org/published/workflow?id=7072731b51e16923, https://usegalaxy.org/published/workflow?id=73c20d784b7ef81a, https://usegalaxy.org/published/workflow?id=74049914e4a6c791, https://usegalaxy.org/published/workflow?id=768cee70d9aa8cc6, https://usegalaxy.org/published/workflow?id=771345c66d5b9700, https://usegalaxy.org/published/workflow?id=7adf904dea83e699, https://usegalaxy.org/published/workflow?id=7b8ee08ba291d231, https://usegalaxy.org/published/workflow?id=7c9a55db0b0eb178, https://usegalaxy.org/published/workflow?id=7dba74c915f63dc1, https://usegalaxy.org/published/workflow?id=7f6900852a81d121, https://usegalaxy.org/published/workflow?id=81f1f0fd6d9235fd, https://usegalaxy.org/published/workflow?id=85f521f5c7351406, https://usegalaxy.org/published/workflow?id=864da6858d34df08, https://usegalaxy.org/published/workflow?id=86c67855acbf6124, https://usegalaxy.org/published/workflow?id=88327cb2e0fe3c25, https://usegalaxy.org/published/workflow?id=8ccb42012dcb5db2, https://usegalaxy.org/published/workflow?id=8cfbaa14cff5a633, https://usegalaxy.org/published/workflow?id=8d605fbd33003d26, https://usegalaxy.org/published/workflow?id=903e35b62946ed76, https://usegalaxy.org/published/workflow?id=90f5b512997c70f8, https://usegalaxy.org/published/workflow?id=91a4daecbb97d03e, https://usegalaxy.org/published/workflow?id=932b3bc10186f73e, https://usegalaxy.org/published/workflow?id=936ed7447c8e0a2d, https://usegalaxy.org/published/workflow?id=93c1fef4472aa7a8, https://usegalaxy.org/published/workflow?id=950c7245a6c3f6e9, https://usegalaxy.org/published/workflow?id=961dac8100c6c70c, https://usegalaxy.org/published/workflow?id=96bd0007dceec123, https://usegalaxy.org/published/workflow?id=9938a81fb6911412, https://usegalaxy.org/published/workflow?id=9ab68c65337b893b, https://usegalaxy.org/published/workflow?id=9ddfdc9d6cacea88, https://usegalaxy.org/published/workflow?id=9f4c4038d1c519e2, https://usegalaxy.org/published/workflow?id=a4a6d6846c1692f9, https://usegalaxy.org/published/workflow?id=a8e0f77cd6ef49f9, https://usegalaxy.org/published/workflow?id=ab0be4897d5355ac, https://usegalaxy.org/published/workflow?id=acada5044d64a30a, https://usegalaxy.org/published/workflow?id=afa89bb0e8966753, https://usegalaxy.org/published/workflow?id=b12f99e2233fcca6, https://usegalaxy.org/published/workflow?id=b1b4fc510099d592, https://usegalaxy.org/published/workflow?id=b1cfa3c239ef2523, https://usegalaxy.org/published/workflow?id=b661fb850c4b4b01, https://usegalaxy.org/published/workflow?id=b6d535f210efa18e, https://usegalaxy.org/published/workflow?id=b7fe3873ee5e3a02, https://usegalaxy.org/published/workflow?id=bb1cb6abfe84a646, https://usegalaxy.org/published/workflow?id=bbc894a79eb0e769, https://usegalaxy.org/published/workflow?id=bd6bfd338ffb9637, https://usegalaxy.org/published/workflow?id=bf79271a438ffa54, https://usegalaxy.org/published/workflow?id=bfd2e7e63d3e6856, https://usegalaxy.org/published/workflow?id=bfef75672b9c3ea4, https://usegalaxy.org/published/workflow?id=bff8bc8d0059274f, https://usegalaxy.org/published/workflow?id=c09b8a0c96123cbb, https://usegalaxy.org/published/workflow?id=c0a9a2d53b8660de, https://usegalaxy.org/published/workflow?id=c8f9e048ddae7d03, https://usegalaxy.org/published/workflow?id=c983ea8a32662cd6, https://usegalaxy.org/published/workflow?id=ca3f2d9554e9e1c8, https://usegalaxy.org/published/workflow?id=cace9f1359874352, https://usegalaxy.org/published/workflow?id=cb4ccd3068819418, https://usegalaxy.org/published/workflow?id=cc50da71cdf6f244, https://usegalaxy.org/published/workflow?id=cfa9e6e722b086c8, https://usegalaxy.org/published/workflow?id=cfd5dc3c7bc1e832, https://usegalaxy.org/published/workflow?id=d08135fa13d1745e, https://usegalaxy.org/published/workflow?id=d2c408df40dc311b, https://usegalaxy.org/published/workflow?id=d2e8a6b39fe88f4c, https://usegalaxy.org/published/workflow?id=d3f35215e6f45d79, https://usegalaxy.org/published/workflow?id=d4b2b85db47c405e, https://usegalaxy.org/published/workflow?id=d5183b025d0e78dd, https://usegalaxy.org/published/workflow?id=daaded719dcfd53b, https://usegalaxy.org/published/workflow?id=dae5d5e5df5c4dd7, https://usegalaxy.org/published/workflow?id=e12e642b88a0fe08, https://usegalaxy.org/published/workflow?id=e4dd39237df58884, https://usegalaxy.org/published/workflow?id=e50e36a25bae863c, https://usegalaxy.org/published/workflow?id=e887adf3afc3253d, https://usegalaxy.org/published/workflow?id=ea206593698adbfd, https://usegalaxy.org/published/workflow?id=eaf96fa3c39c210b, https://usegalaxy.org/published/workflow?id=f09033420c6267ab, https://usegalaxy.org/published/workflow?id=f18e6fa5270fcd37, https://usegalaxy.org/published/workflow?id=f1a54b10d4afce8f, https://usegalaxy.org/published/workflow?id=f93a4f6b5f3aaaed, https://usegalaxy.org/published/workflow?id=fa26fd51caea53c7, https://usegalaxy.org/published/workflow?id=fa36d9b50e956917, https://usegalaxy.org/published/workflow?id=fb98ef955b3dbd4b, https://usegalaxy.org/published/workflow?id=fc2b48600853f3ea, https://usegalaxy.org/published/workflow?id=fc7b14aafa0b421e, https://usegalaxy.org/published/workflow?id=fd155fcba9bed7ff, https://usegalaxy.org/published/workflow?id=fd40e50c9f1545ce, https://workflowhub.eu/workflows/1054?version=1, https://workflowhub.eu/workflows/1057?version=8, https://workflowhub.eu/workflows/1103?version=3, https://workflowhub.eu/workflows/1104?version=2, https://workflowhub.eu/workflows/1162?version=2, https://workflowhub.eu/workflows/1163?version=2, https://workflowhub.eu/workflows/1164?version=2, https://workflowhub.eu/workflows/1327?version=6, https://workflowhub.eu/workflows/1594?version=1, https://workflowhub.eu/workflows/1641?version=1, https://workflowhub.eu/workflows/605?version=1, https://workflowhub.eu/workflows/606?version=2, https://workflowhub.eu/workflows/608?version=1, https://workflowhub.eu/workflows/612?version=23, https://workflowhub.eu/workflows/625?version=23, https://workflowhub.eu/workflows/633?version=21, https://workflowhub.eu/workflows/641?version=25, https://workflowhub.eu/workflows/642?version=23, https://workflowhub.eu/workflows/643?version=5, https://workflowhub.eu/workflows/645?version=12, https://workflowhub.eu/workflows/701?version=1, https://workflowhub.eu/workflows/702?version=1, https://workflowhub.eu/workflows/751?version=16, https://workflowhub.eu/workflows/788?version=1, https://workflowhub.eu/workflows/789?version=1 |
assembly/ERGA-post-assembly-QC, assembly/assembly-decontamination, assembly/vgp_genome_assembly |
|
gi2taxonomy |
Fetch Taxonomic Ranks |
Fetch taxonomic representation |
2014-01-27 |
https://bitbucket.org/natefoo/taxonomy |
1.1.1 |
taxonomy |
0.10.1 |
To update |
Metagenomics |
Database search, ID mapping |
Database search, ID mapping |
Taxonomy |
Taxonomy |
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/taxonomy/gi2taxonomy |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/taxonomy/gi2taxonomy |
gi2taxonomy |
gi2taxonomy |
The tool fetches taxonomic information for a list of sequence identifiers (i.e. GI numbers, as used by the National Center for Biotechnology Information (NCBI). |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
74 |
110 |
483 |
683 |
18 |
1798 |
122 |
14058 |
0 |
0 |
0 |
0 |
1 |
1 |
2 |
6 |
14747 |
607 |
1909 |
93 |
https://usegalaxy.org/published/workflow?id=19c9c8cc3c813bda, https://usegalaxy.org/published/workflow?id=2f7638035fb889ac, https://usegalaxy.org/published/workflow?id=55aa743125c2465d, https://usegalaxy.org/published/workflow?id=59347cc210c4cdbc, https://usegalaxy.org/published/workflow?id=7294f75ad01ca7ed, https://usegalaxy.org/published/workflow?id=7b67ffcf1b7c2232, https://usegalaxy.org/published/workflow?id=85d825931edf4a64, https://usegalaxy.org/published/workflow?id=896d29573ea3e574, https://usegalaxy.org/published/workflow?id=d851f8436497dd1c |
|
|
glimmer_hmm |
|
GlimmerHMM is a new gene finder based on a Generalized Hidden Markov Model (GHMM) |
2015-02-28 |
https://ccb.jhu.edu/software/glimmerhmm/ |
|
|
|
To update |
Sequence Analysis |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm |
https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
gmaj |
gmaj_1 |
GMAJ Multiple Alignment Viewer |
2014-01-27 |
|
2.0.1 |
|
|
To update |
Visualization |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/gmaj |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/gmaj |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
7 |
7 |
12 |
12 |
25 |
230 |
78 |
984 |
7 |
8 |
10 |
11 |
1 |
1 |
1 |
1 |
1008 |
101 |
246 |
40 |
|
|
|
gotohscan |
rbc_gotohscan |
Find subsequences in db |
2015-07-02 |
|
1.3.0 |
gotohscan |
2.0 |
To update |
Sequence Analysis |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/gotohscan |
https://github.com/bgruening/galaxytools/tree/master/tools/gotohscan |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
5 |
7 |
26 |
72 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
72 |
26 |
7 |
5 |
|
|
|
graph_converter |
graph_converter |
Convert between different graph formats |
2015-02-28 |
|
0.1.0 |
|
|
To update |
Convert Formats |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/graph_converter |
https://github.com/bgruening/galaxytools/tree/master/tools/graph_converter |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
graphclust |
graphclust |
GraphClust can be used for structural clustering of RNA sequences. |
2015-02-28 |
http://www.bioinf.uni-freiburg.de/Software/GraphClust/ |
0.1 |
GraphClust |
|
To update |
RNA |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/graphclust |
https://github.com/bgruening/galaxytools/tree/master/tools/graphclust |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
0 |
1 |
0 |
|
|
|
graphclust_aggregate_alignments |
graphclust_aggregate_alignments |
Aggregate and filter alignment metrics of individual clusters, like the output of graphclust_align_cluster. |
2018-10-24 |
|
0.6.0 |
graphclust-wrappers |
0.6.0 |
Up-to-date |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tools/GraphClust/AggregateAlignments |
https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/AggregateAlignments |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
14 |
17 |
38 |
120 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
120 |
38 |
17 |
14 |
|
|
|
graphclust_align_cluster |
graphclust_align_cluster |
Align predicted clusters of glob_report_no_align step with locarna and conservation analysis and visualizations. |
2018-10-22 |
|
0.1 |
graphclust-wrappers |
0.6.0 |
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster |
https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/AlignCluster |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
23 |
25 |
164 |
3101 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3101 |
164 |
25 |
23 |
|
|
|
graphclust_cmfinder |
cmFinder |
Determines consensus motives for sequences. |
2016-12-15 |
|
0.4 |
graphclust-wrappers |
0.6.0 |
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CMFinder |
https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CMFinder |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
41 |
58 |
23273 |
50693 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
50693 |
23273 |
58 |
41 |
https://usegalaxy.eu/published/workflow?id=9b1b135109072e71, https://usegalaxy.eu/published/workflow?id=bc4155d947ea0808, https://usegalaxy.eu/published/workflow?id=e51f857dd851e7d7 |
|
|
graphclust_fasta_to_gspan |
gspan |
Second step of GraphClust |
2016-12-15 |
|
0.4 |
graphclust-wrappers |
0.6.0 |
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/GSPAN |
https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/GSPAN |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
20 |
26 |
82 |
161 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
161 |
82 |
26 |
20 |
|
|
|
graphclust_mlocarna |
locarna_best_subtree |
MLocARNA computes a multiple sequence-structure alignment of RNA sequences. |
2016-12-15 |
|
0.4 |
graphclust-wrappers |
0.6.0 |
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/LocARNAGraphClust |
https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/LocARNAGraphClust |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
41 |
58 |
23307 |
50825 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
50825 |
23307 |
58 |
41 |
https://usegalaxy.eu/published/workflow?id=9b1b135109072e71, https://usegalaxy.eu/published/workflow?id=bc4155d947ea0808, https://usegalaxy.eu/published/workflow?id=e51f857dd851e7d7 |
|
|
graphclust_motif_finder_plot |
motifFinderPlot |
Plotting results for GraphClust |
2017-02-22 |
|
0.4 |
seaborn |
|
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/eteriSokhoyan/galaxytools/tree/master/tools/GraphClust/Plotting |
https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/Plotting |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
8 |
10 |
36 |
71 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
71 |
36 |
10 |
8 |
|
|
|
graphclust_nspdk |
NSPDK_candidateClust, nspdk_sparse |
Produces an explicit sparse feature encoding and copmutes global feature index and returns top dense sets. |
2016-12-15 |
|
9.2.3.1 |
graphclust-wrappers |
0.6.0 |
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/NSPDK |
https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/NSPDK |
|
|
|
|
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
0 |
46 |
64 |
2586 |
62905 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
62905 |
2586 |
64 |
46 |
https://usegalaxy.eu/published/workflow?id=9b1b135109072e71, https://usegalaxy.eu/published/workflow?id=bc4155d947ea0808, https://usegalaxy.eu/published/workflow?id=e51f857dd851e7d7 |
|
|
graphclust_postprocessing |
glob_report |
Post-processing. Redundant clusters are merged and instances that belong to multiple clusters are assigned unambiguously. For every pair of clusters, the relative overlap (i.e. the fraction of instances that occur in both clusters) is computed and clusters are merged if the overlap exceeds 50%. instances that occur in both clusters) is computed and clusters are merged if the overlap exceeds 50%. |
2016-12-15 |
|
0.5 |
graphclust-wrappers |
0.6.0 |
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResults |
https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResults |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
46 |
63 |
881 |
2131 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2131 |
881 |
63 |
46 |
https://usegalaxy.eu/published/workflow?id=9b1b135109072e71, https://usegalaxy.eu/published/workflow?id=bc4155d947ea0808, https://usegalaxy.eu/published/workflow?id=e51f857dd851e7d7 |
|
|
graphclust_postprocessing_no_align |
graphclust_glob_report_no_align |
Redundant GraphClust clusters are merged and instances that belong to multiple clusters are assigned unambiguously. |
2018-10-25 |
|
0.5 |
graphclust-wrappers |
0.6.0 |
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResultsNoAlign |
https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResultsNoAlign |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
1 |
3 |
27 |
108 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
108 |
27 |
3 |
1 |
|
|
|
graphclust_prepocessing_for_mlocarna |
preMloc |
This tool prepares files for locarna step. |
2016-12-15 |
|
0.4 |
graphclust-wrappers |
0.6.0 |
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/PrepareForMlocarna |
https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/PrepareForMlocarna |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
46 |
64 |
962 |
2140 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2140 |
962 |
64 |
46 |
https://usegalaxy.eu/published/workflow?id=9b1b135109072e71, https://usegalaxy.eu/published/workflow?id=bc4155d947ea0808, https://usegalaxy.eu/published/workflow?id=e51f857dd851e7d7 |
|
|
graphclust_preprocessing |
preproc |
Preprocessing input for GraphClust |
2016-12-15 |
|
0.5 |
graphclust-wrappers |
0.6.0 |
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust |
https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/Preprocessing |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
53 |
73 |
952 |
1921 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1921 |
952 |
73 |
53 |
https://usegalaxy.eu/published/workflow?id=9b1b135109072e71, https://usegalaxy.eu/published/workflow?id=bc4155d947ea0808, https://usegalaxy.eu/published/workflow?id=e51f857dd851e7d7 |
|
|
graphicsmagick |
graphicsmagick_image_compare, graphicsmagick_image_convert, graphicsmagick_image_montage |
Contains tools based on GraphicsMagick |
2016-12-26 |
http://www.graphicsmagick.org |
1.3.45 |
graphicsmagick |
1.3.26 |
To update |
Imaging |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/graphicsmagick |
https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/graphicsmagick |
|
|
|
|
1 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
56 |
64 |
1640 |
2803 |
3 |
3 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2806 |
1643 |
67 |
59 |
https://dev.workflowhub.eu/workflows/1195?version=2, https://usegalaxy.eu/published/workflow?id=03e8b0d3dcedc092, https://usegalaxy.eu/published/workflow?id=0b2304aa2083bd1a, https://usegalaxy.eu/published/workflow?id=0c6dd9e75d9a2130, https://usegalaxy.eu/published/workflow?id=4f0f3b911b4e4921, https://usegalaxy.eu/published/workflow?id=64bb7a64877034dc, https://usegalaxy.eu/published/workflow?id=6afc245029ce5008, https://usegalaxy.eu/published/workflow?id=b4bfcbf8acee9cc3, https://workflowhub.eu/workflows/1432?version=1, https://workflowhub.eu/workflows/1745?version=2, https://workflowhub.eu/workflows/807?version=1 |
climate/pangeo, ecology/x-array-map-plot, galaxy-interface/workflow-posters |
|
graphmap |
graphmap_align, graphmap_overlap |
Mapper for long, error-prone reads. |
2018-09-27 |
https://github.com/isovic/graphmap/ |
0.5.2 |
graphmap |
0.6.4 |
To update |
Assembly |
Sequence trimming, EST assembly, Read mapping |
Sequence trimming, EST assembly, Read mapping |
Gene transcripts, RNA-Seq, RNA splicing |
Gene transcripts, RNA-Seq, RNA splicing |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/graphmap |
https://github.com/bgruening/galaxytools/tree/master/tools/graphmap |
graphmap |
graphmap |
Splice-aware RNA-seq mapper for long reads | GraphMap - A highly sensitive and accurate mapper for long, error-prone reads |
|
0 |
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
306 |
335 |
6719 |
7528 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7528 |
6719 |
335 |
306 |
|
|
|
graphprot |
graphprot_predict_profile |
GraphProt models binding preferences of RNA-binding proteins. |
2018-05-24 |
https://github.com/dmaticzka/GraphProt |
1.1.7+galaxy2 |
graphprot |
1.1.7 |
To update |
Sequence Analysis, RNA, CLIP-seq |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/graphprot |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/graphprot |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
20 |
21 |
425 |
496 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
496 |
425 |
21 |
20 |
https://usegalaxy.eu/published/workflow?id=0c619b25c1394a09, https://usegalaxy.eu/published/workflow?id=153ba1581743d31f, https://usegalaxy.eu/published/workflow?id=24ddd188da35b061, https://usegalaxy.eu/published/workflow?id=6514e610c79df72c, https://usegalaxy.eu/published/workflow?id=8fb156020285e049, https://usegalaxy.eu/published/workflow?id=b619339f4e1c6fdf |
|
|
hclust2 |
hclust2 |
Plots heatmaps |
2018-07-22 |
https://bitbucket.org/nsegata/hclust2/ |
0.99 |
hclust2 |
1.0.0 |
To update |
Data Visualization |
|
|
|
|
rnateam |
https://github.com/yuanbit/galaxytools/tree/hclust2/tools/hclust2 |
https://github.com/bgruening/galaxytools/tree/master/tools/hclust2 |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
hgv_fundo |
hgv_funDo |
FunDO human genes associated with disease terms |
2013-09-25 |
|
1.0.0 |
|
|
To update |
Sequence Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/hgv/hgv_fundo |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/hgv/hgv_fundo |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
27 |
397 |
104 |
1794 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1794 |
104 |
397 |
27 |
|
|
|
hgv_hilbertvis |
hgv_hilbertvis |
HVIS visualization of genomic data with the Hilbert curve |
2013-09-25 |
https://www.ebi.ac.uk/huber-srv/hilbert/ |
1.0.0 |
R |
|
To update |
Graphics, Visualization |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/hgv/hgv_hilbertvis |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/hgv/hgv_hilbertvis |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
14 |
60 |
117 |
265 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
265 |
117 |
60 |
14 |
|
|
|
hictk |
hictk |
Convert cooler to juicebox_hic |
2024-02-03 |
https://github.com/paulsengroup/hictk |
2.0.2 |
hictk |
2.1.4 |
To update |
Convert Formats, Epigenetics |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/hictk |
https://github.com/bgruening/galaxytools/tree/master/tools/hictk |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
14 |
14 |
51 |
51 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
51 |
51 |
14 |
14 |
|
|
|
hicup |
hicup2juicer, hicup_deduplicator, hicup_digester, hicup_filter, hicup_hicup, hicup_mapper, hicup_truncater |
The HiCUP-Pipeline from the Bioinformatics Babraham Institute. |
2017-03-09 |
https://www.bioinformatics.babraham.ac.uk/projects/hicup/read_the_docs/html/index.html |
0.9.2 |
|
|
To update |
Epigenetics |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/hicup |
https://github.com/bgruening/galaxytools/tree/master/tools/hicup |
|
|
|
|
7 |
0 |
7 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 |
6 |
0 |
39 |
44 |
851 |
1095 |
31 |
31 |
691 |
691 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1786 |
1542 |
75 |
70 |
https://usegalaxy.eu/published/workflow?id=57b96a59cca0e8df, https://usegalaxy.eu/published/workflow?id=7d49f41cd294e15b, https://usegalaxy.eu/published/workflow?id=83fea2e4508bc3ed, https://usegalaxy.eu/published/workflow?id=cbe9e09ed3e91e2e, https://usegalaxy.org/published/workflow?id=2ffae50d0916b641, https://usegalaxy.org/published/workflow?id=43cea919ebf9d978, https://usegalaxy.org/published/workflow?id=748c1a9d85eb61e2, https://usegalaxy.org/published/workflow?id=ba4815ec62edab04 |
|
|
hisat |
hisat |
HISAT is a fast and sensitive spliced alignment program. |
2015-05-13 |
http://ccb.jhu.edu/software/hisat/index.shtml |
1.0.3 |
hisat |
|
To update |
Assembly |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/hisat |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
0 |
228 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
228 |
0 |
12 |
0 |
|
|
|
histogram |
histogram_rpy |
Histogram of a numeric column |
2014-07-28 |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/histogram |
1.0.5 |
rpy2 |
2.7.8 |
To update |
Graphics, Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/histogram |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/histogram |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
894 |
1088 |
3757 |
4808 |
1558 |
7347 |
6227 |
49220 |
138 |
267 |
503 |
794 |
170 |
172 |
449 |
557 |
55379 |
10936 |
8874 |
2760 |
https://dev.workflowhub.eu/workflows/1037?version=1, https://dev.workflowhub.eu/workflows/1140?version=2, https://dev.workflowhub.eu/workflows/1163?version=2, https://dev.workflowhub.eu/workflows/1167?version=2, https://dev.workflowhub.eu/workflows/1215?version=2, https://dev.workflowhub.eu/workflows/1380?version=1, https://usegalaxy.eu/published/workflow?id=9e0d784860d6cc91, https://usegalaxy.eu/published/workflow?id=a2b386eef5645acd, https://usegalaxy.org.au/published/workflow?id=43a951ec514498f6, https://usegalaxy.org.au/published/workflow?id=781457327e644c7e, https://usegalaxy.org.au/published/workflow?id=da79aa2dfd6b34bc, https://usegalaxy.org/published/workflow?id=07739fbbd53755f6, https://usegalaxy.org/published/workflow?id=13a550ed56b56502, https://usegalaxy.org/published/workflow?id=18e7a954c0b6e4bc, https://usegalaxy.org/published/workflow?id=25adc55d2a26e34b, https://usegalaxy.org/published/workflow?id=9cc814d43379c2a6, https://usegalaxy.org/published/workflow?id=d2864aa3631b3bf6, https://usegalaxy.org/published/workflow?id=f823b87dd06ba4ac, https://workflowhub.eu/workflows/1448?version=1, https://workflowhub.eu/workflows/1449?version=1, https://workflowhub.eu/workflows/1458?version=1, https://workflowhub.eu/workflows/1462?version=1, https://workflowhub.eu/workflows/1469?version=1 |
microbiome/metaplasmidome_query, proteomics/DIA_Analysis_MSstats, proteomics/maxquant-label-free, proteomics/protein-quant-sil |
|
homer |
|
Software for motif discovery and next generation sequencing analysis. |
2015-02-28 |
http://homer.salk.edu/homer/ |
|
|
|
To update |
Sequence Analysis |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/homer |
https://github.com/bgruening/galaxytools/tree/master/tools/homer |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
htseq_clip |
htseq_clip |
htseq-clip is a toolset for the analysis of eCLIP/iCLIP datasets |
2022-10-11 |
https://github.com/EMBL-Hentze-group/htseq-clip |
0.1.0+galaxy0 |
htseq-clip |
2.19.0b0 |
To update |
Sequence Analysis, RNA, CLIP-seq |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/htseq-clip |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/htseq-clip |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
21 |
21 |
106 |
106 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
106 |
106 |
21 |
21 |
|
|
|
illumina_methylation_analyser |
illumina_methylation_analyser |
Methylation analyzer for Illumina 450k DNA emthylation microarrays |
2015-02-28 |
https://github.com/bgruening/galaxytools/tree/master/tools/illumina_methylation_analyser |
0.1 |
Rscript |
|
To update |
Sequence Analysis |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/illumina_methylation_analyser |
https://github.com/bgruening/galaxytools/tree/master/tools/illumina_methylation_analyser |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
imagej2 |
imagej2_adjust_threshold_binary, imagej2_analyze_particles_binary, imagej2_analyze_skeleton, imagej2_binary_to_edm, imagej2_bunwarpj_adapt_transform, imagej2_bunwarpj_align, imagej2_bunwarpj_compare_elastic, imagej2_bunwarpj_compare_elastic_raw, imagej2_bunwarpj_compare_raw, imagej2_bunwarpj_compose_elastic, imagej2_bunwarpj_compose_raw, imagej2_bunwarpj_compose_raw_elastic, imagej2_bunwarpj_convert_to_raw, imagej2_bunwarpj_elastic_transform, imagej2_bunwarpj_raw_transform, imagej2_create_image, imagej2_crop, imagej2_enhance_contrast, imagej2_filter, imagej2_find_edges, imagej2_find_maxima, imagej2_make_binary, imagej2_math, imagej2_noise, imagej2_shadows, imagej2_sharpen, imagej2_skeletonize3d, imagej2_smooth, imagej2_watershed_binary |
ImageJ2 is a new version of ImageJ for the next generation of multidimensionalimage data, with a focus on scientific imaging. |
2015-05-05 |
http://fiji.sc |
20240614 |
|
|
To update |
Imaging |
Image analysis, Image annotation, Visualisation |
Image analysis, Image annotation, Visualisation |
Imaging |
Imaging |
imgteam |
https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 |
https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 |
imagej |
ImageJ2 |
It is a public domain Java image processing program, which was designed with an open architecture. Custom acquisition, analysis and processing plugins can be developed using ImageJ’s built-in editor and a Java compiler. User-written plugins make it possible to solve many image processing and analysis problems, from three-dimensional live-cell imaging, to radiological image processing, multiple imaging system data comparisons to automated hematology systems. |
imagej2 |
0 |
0 |
27 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
27 |
27 |
0 |
10 |
10 |
1337 |
1768 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1768 |
1337 |
10 |
10 |
https://workflowhub.eu/workflows/1259?version=1 |
|
|
indels_3way |
indels_3way |
Fetch Indels from 3-way alignments |
2013-09-25 |
|
1.0.3 |
|
|
To update |
Sequence Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/indels_3way |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/indels_3way |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1 |
1 |
11 |
22 |
3 |
21 |
25 |
292 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
314 |
36 |
22 |
4 |
|
|
|
infernal |
infernal_cmalign, infernal_cmbuild, infernal_cmpress, infernal_cmscan, infernal_cmsearch, infernal_cmstat |
Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence similarities. |
2015-02-28 |
http://infernal.janelia.org/ |
1.1.5 |
infernal |
1.1.5 |
Up-to-date |
RNA |
Nucleic acid feature detection |
Nucleic acid feature detection |
Sequence sites, features and motifs, Structural genomics |
Sequence sites, features and motifs, Structural genomics |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/infernal |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/infernal |
infernal |
Infernal |
Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence similarities. It is an implementation of a special case of profile stochastic context-free grammars called covariance models (CMs). A CM is like a sequence profile, but it scores a combination of sequence consensus and RNA secondary structure consensus, so in many cases, it is more capable of identifying RNA homologs that conserve their secondary structure more than their primary sequence. |
|
6 |
6 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
6 |
0 |
97 |
135 |
55882 |
114704 |
1 |
1 |
4 |
4 |
9 |
9 |
1207 |
1361 |
0 |
0 |
0 |
0 |
116069 |
57093 |
145 |
107 |
https://usegalaxy.eu/published/workflow?id=2e1feecca56bb0b8, https://usegalaxy.eu/published/workflow?id=437704898229dfb6, https://usegalaxy.eu/published/workflow?id=5cd167ed9e159e73, https://usegalaxy.eu/published/workflow?id=5ec0d6d108e02e1a, https://usegalaxy.eu/published/workflow?id=7d343d982f1105bf, https://usegalaxy.eu/published/workflow?id=8f2d958cee428ca1, https://usegalaxy.eu/published/workflow?id=9b1b135109072e71, https://usegalaxy.eu/published/workflow?id=bc4155d947ea0808, https://usegalaxy.eu/published/workflow?id=e51f857dd851e7d7, https://workflowhub.eu/workflows/1270?version=2 |
|
|
inforna |
|
INFO-RNA is a service for the design of RNA sequences that fold into a given pseudo-knot free RNA secondary structure. |
2015-02-28 |
http://rna.informatik.uni-freiburg.de/INFORNA/Input.jsp |
|
|
|
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/inforna |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/inforna |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
instagraal |
instagraal |
Large genome reassembly based on Hi-C data |
2022-11-10 |
https://github.com/koszullab/instaGRAAL |
0.1.6 |
|
|
To update |
Assembly |
Genome assembly, Mapping assembly, Genetic mapping, Scaffolding |
Genome assembly, Mapping assembly, Genetic mapping, Scaffolding |
Sequence assembly, Mapping, Metagenomics, Statistics and probability, DNA binding sites |
Sequence assembly, Mapping, Metagenomics, Statistics and probability, DNA binding sites |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/instagraal |
https://github.com/bgruening/galaxytools/tree/master/tools/instagraal |
instagraal |
instaGRAAL |
Chromosome-level quality scaffolding of brown algal genomes using InstaGRAAL.Large genome reassembly based on Hi-C data, continuation of GRAAL.Large genome reassembly based on Hi-C data (continuation and partial rewrite of GRAAL) and post-scaffolding polishing libraries.This work is under continuous development/improvement - see GRAAL for information about the basic principles.sudo pip3 install -e git+https://github.com/koszullab/instagraal.git@master#egg=instagraal.Note to OS X users: There is currently no CUDA support on Mojave (10.14) and it is unclear when it is going to be added, if it is to be added at all. This means instaGRAAL (or indeed any CUDA-based application) will not work on Mojave. If you wish to run it on OS X, the only solution for now is to downgrade to High Sierra (10.13) |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
15 |
15 |
159 |
159 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
159 |
159 |
15 |
15 |
|
|
|
intarna |
intarna |
Efficient RNA-RNA interaction prediction incorporating accessibility and seeding of interaction sites. |
2017-02-09 |
https://github.com/BackofenLab/IntaRNA |
3.4.1 |
intarna |
3.4.1 |
Up-to-date |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/intarna |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/intarna |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
41 |
48 |
3116 |
7713 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7713 |
3116 |
48 |
41 |
|
|
|
intersect |
gops_intersect_1 |
Intersect the intervals of two datasets |
2014-04-01 |
https://github.com/galaxyproject/gops |
1.0.0 |
bx-python |
0.14.0 |
To update |
Genomic Interval Operations |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/intersect |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/gops/intersect |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
2402 |
3168 |
20481 |
350925 |
4538 |
14563 |
46292 |
782991 |
471 |
580 |
6122 |
7689 |
71 |
73 |
539 |
559 |
1142164 |
73434 |
18384 |
7482 |
https://dev.workflowhub.eu/workflows/1102?version=1, https://dev.workflowhub.eu/workflows/1110?version=1, https://dev.workflowhub.eu/workflows/1111?version=1, https://dev.workflowhub.eu/workflows/1173?version=2, https://usegalaxy.eu/published/workflow?id=013cc98f55b01d5d, https://usegalaxy.eu/published/workflow?id=0edf0e9a778cb732, https://usegalaxy.eu/published/workflow?id=124f884ee53685e8, https://usegalaxy.eu/published/workflow?id=13a7b30df801ea47, https://usegalaxy.eu/published/workflow?id=24ef0d03f58d4fc5, https://usegalaxy.eu/published/workflow?id=4309cbf427fa1f78, https://usegalaxy.eu/published/workflow?id=4516fe237a7112cc, https://usegalaxy.eu/published/workflow?id=68f7300f922f548d, https://usegalaxy.eu/published/workflow?id=69eed719f9b5b99d, https://usegalaxy.eu/published/workflow?id=6a48604ef9ceb8b8, https://usegalaxy.eu/published/workflow?id=86900be4282d4b1d, https://usegalaxy.eu/published/workflow?id=937fa7f2f83bb735, https://usegalaxy.eu/published/workflow?id=941bc727b61c09ab, https://usegalaxy.eu/published/workflow?id=a2c46deea34d9d80, https://usegalaxy.eu/published/workflow?id=ad636a8e1763580a, https://usegalaxy.eu/published/workflow?id=af7926dfd0f3501c, https://usegalaxy.eu/published/workflow?id=c4cefff5b812aae9, https://usegalaxy.eu/published/workflow?id=d2ef6d4a2189c0a6, https://usegalaxy.eu/published/workflow?id=f30c8054f064ac9f, https://usegalaxy.org.au/published/workflow?id=19e3488987d58d73, https://usegalaxy.org.au/published/workflow?id=5668c42a05ca6be4, https://usegalaxy.org.au/published/workflow?id=a9e52a40b63d26fc, https://usegalaxy.org.au/published/workflow?id=b0b8b8f79b467cf6, https://usegalaxy.org.au/published/workflow?id=f27f6ed478d7a258, https://usegalaxy.org/published/workflow?id=013bf76cb3a8bd66, https://usegalaxy.org/published/workflow?id=165af757a6b84be9, https://usegalaxy.org/published/workflow?id=27e1a8c651d9a298, https://usegalaxy.org/published/workflow?id=30507545aa971637, https://usegalaxy.org/published/workflow?id=37383240151a472a, https://usegalaxy.org/published/workflow?id=4375f00f8a285088, https://usegalaxy.org/published/workflow?id=44b27a1296633366, https://usegalaxy.org/published/workflow?id=4f02edb5c9bb84ab, https://usegalaxy.org/published/workflow?id=56530f4d41413832, https://usegalaxy.org/published/workflow?id=60b080dc16141121, https://usegalaxy.org/published/workflow?id=7942748c29d718f8, https://usegalaxy.org/published/workflow?id=888bfce1c214ab64, https://usegalaxy.org/published/workflow?id=8e5efd04399c6838, https://usegalaxy.org/published/workflow?id=8e9882d890ee5ec7, https://usegalaxy.org/published/workflow?id=9005ecd577bd9bfa, https://usegalaxy.org/published/workflow?id=9238f7208033d0d6, https://usegalaxy.org/published/workflow?id=b0f85c802c1ea7f8, https://usegalaxy.org/published/workflow?id=b1cd3f793187d667, https://usegalaxy.org/published/workflow?id=baf01109a1bf8d0d, https://usegalaxy.org/published/workflow?id=c2b299627d2baf48, https://usegalaxy.org/published/workflow?id=dd949127e22f9f1f, https://usegalaxy.org/published/workflow?id=e3c1736cca484dda, https://usegalaxy.org/published/workflow?id=e4f6b68301aafd38, https://usegalaxy.org/published/workflow?id=e81a10ac8b20c801, https://usegalaxy.org/published/workflow?id=ebac500f62f4a469, https://usegalaxy.org/published/workflow?id=f365c53b5024d7f1, https://usegalaxy.org/published/workflow?id=f637ea9a753cfbe8, https://workflowhub.eu/workflows/1475?version=1, https://workflowhub.eu/workflows/1478?version=1, https://workflowhub.eu/workflows/1518?version=1, https://workflowhub.eu/workflows/1544?version=1 |
genome-annotation/gene-centric, introduction/galaxy-intro-peaks2genes, introduction/galaxy-intro-strands |
|
iprscan5 |
|
Interproscan queries the interpro database and provides annotations. |
2015-02-28 |
http://www.ebi.ac.uk/Tools/pfa/iprscan5/ |
|
|
|
To update |
Sequence Analysis |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/iprscan5 |
https://github.com/bgruening/galaxytools/tree/master/tools/iprscan5 |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
itsx |
itsx |
ITSx is an open source software utility to extract the highly variable ITS1 and ITS2 subregions from ITS sequences. |
2022-05-02 |
https://microbiology.se/software/itsx/ |
1.1.3 |
itsx |
1.1.3 |
Up-to-date |
Metagenomics |
Sequence feature detection |
Sequence feature detection |
Functional, regulatory and non-coding RNA, Microbiology |
Functional, regulatory and non-coding RNA, Microbiology |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/itsx |
https://github.com/bgruening/galaxytools/tree/master/tools/itsx |
ITSx |
ITSx |
TSx is an open source software utility to extract the highly variable ITS1 and ITS2 subregions from ITS sequences, which is commonly used as a molecular barcode for e.g. fungi. As the inclusion of parts of the neighbouring, very conserved, ribosomal genes (SSU, 5S and LSU rRNA sequences) in the sequence identification process can lead to severely misleading results, ITSx identifies and extracts only the ITS regions themselves. |
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
95 |
95 |
2207 |
2207 |
0 |
0 |
0 |
0 |
5 |
5 |
28 |
28 |
0 |
0 |
0 |
0 |
2235 |
2235 |
100 |
100 |
|
|
|
jbrowse2 |
jbrowse2 |
JBrowse2 Genome Browser integrated as a Galaxy Tool |
2024-06-04 |
https://jbrowse.org |
2.17.0 |
jbrowse2 |
3.6.4 |
To update |
Sequence Analysis |
Genome visualisation, Structure visualisation, Pathway visualisation |
Genome visualisation, Structure visualisation, Pathway visualisation |
Mapping, Structural variation, Genomics, Gene structure, Sequence assembly |
Mapping, Structural variation, Genomics, Gene structure, Sequence assembly |
fubar |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 |
https://github.com/bgruening/galaxytools/tree/master/tools/jbrowse2 |
jbrowse_2 |
JBrowse 2 |
Modular genome browser with views of synteny and structural variation. |
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
360 |
360 |
2065 |
2065 |
156 |
156 |
551 |
551 |
48 |
48 |
308 |
308 |
0 |
0 |
0 |
0 |
2924 |
2924 |
564 |
564 |
https://usegalaxy.eu/published/workflow?id=1ce406de61de8492, https://usegalaxy.eu/published/workflow?id=2cd5670f075704ab, https://usegalaxy.eu/published/workflow?id=2e93613c688ea52e, https://usegalaxy.eu/published/workflow?id=309969a261189b5f, https://usegalaxy.eu/published/workflow?id=36de05d50c703164, https://usegalaxy.eu/published/workflow?id=38f12705279b5dfa, https://usegalaxy.eu/published/workflow?id=3cf3dd9727b7ac92, https://usegalaxy.eu/published/workflow?id=5f29105e842716db, https://usegalaxy.eu/published/workflow?id=84414f3441946702, https://usegalaxy.eu/published/workflow?id=972db4abc51bb3ab, https://usegalaxy.eu/published/workflow?id=aada0111f835ce49, https://usegalaxy.eu/published/workflow?id=cc2bc81352d2e2cd, https://usegalaxy.eu/published/workflow?id=df08e520ec3dbcb7, https://usegalaxy.eu/published/workflow?id=efb58bba65393347, https://usegalaxy.org.au/published/workflow?id=a9068ea858222e2b, https://usegalaxy.org/published/workflow?id=386d3b300cf05305, https://usegalaxy.org/published/workflow?id=505c826e8c99d7bf, https://usegalaxy.org/published/workflow?id=89d3c800d3be6050 |
epigenetics/formation_of_super-structures_on_xi |
|
join |
gops_join_1 |
Join the intervals of two datasets side-by-side |
2014-04-01 |
https://github.com/galaxyproject/gops |
1.0.0 |
bx-python |
0.14.0 |
To update |
Genomic Interval Operations |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/join |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/gops/join |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1565 |
2481 |
14974 |
331127 |
8818 |
39713 |
47410 |
515332 |
188 |
292 |
1253 |
1701 |
32 |
33 |
170 |
180 |
848340 |
63807 |
42519 |
10603 |
https://usegalaxy.eu/published/workflow?id=04b838103aed1929, https://usegalaxy.eu/published/workflow?id=29346872085adf1f, https://usegalaxy.eu/published/workflow?id=2f7149d02db43b7b, https://usegalaxy.eu/published/workflow?id=3e91f8417a66d02c, https://usegalaxy.eu/published/workflow?id=4a33a8348ac03f00, https://usegalaxy.eu/published/workflow?id=51cce3b98da3e822, https://usegalaxy.eu/published/workflow?id=579a56c129883cf3, https://usegalaxy.eu/published/workflow?id=61dcc0998fa4d309, https://usegalaxy.eu/published/workflow?id=6ea9c7e45df94bf8, https://usegalaxy.eu/published/workflow?id=7878623b7e959284, https://usegalaxy.eu/published/workflow?id=7bcac5c6594e866c, https://usegalaxy.eu/published/workflow?id=7fbde7faec75c781, https://usegalaxy.eu/published/workflow?id=81abf01f79f358fe, https://usegalaxy.eu/published/workflow?id=8c44228d11782e61, https://usegalaxy.eu/published/workflow?id=9d888cef61f5072f, https://usegalaxy.eu/published/workflow?id=a6a36943accc9b7d, https://usegalaxy.eu/published/workflow?id=a7f2835a74bdf10c, https://usegalaxy.eu/published/workflow?id=b711696909ee2b59, https://usegalaxy.eu/published/workflow?id=b89ce83b1121c95a, https://usegalaxy.eu/published/workflow?id=cdf677a621166238, https://usegalaxy.eu/published/workflow?id=fd97c08fdaa6a5eb, https://usegalaxy.org.au/published/workflow?id=1b3c4c9b1ab8032d, https://usegalaxy.org.au/published/workflow?id=252baad4e5ade6bc, https://usegalaxy.org/published/workflow?id=0135ec6af1f3be93, https://usegalaxy.org/published/workflow?id=0360984110693d9f, https://usegalaxy.org/published/workflow?id=0a57740c68e85e21, https://usegalaxy.org/published/workflow?id=0ab1922bc4ea12b2, https://usegalaxy.org/published/workflow?id=1207eb597775b8a0, https://usegalaxy.org/published/workflow?id=1e350f8ab5978571, https://usegalaxy.org/published/workflow?id=25897c7a15f29c32, https://usegalaxy.org/published/workflow?id=26d2c2d51d6a7158, https://usegalaxy.org/published/workflow?id=292b9d1975c349f3, https://usegalaxy.org/published/workflow?id=31e73cdaa0fb70c3, https://usegalaxy.org/published/workflow?id=3403b88bc18cbe62, https://usegalaxy.org/published/workflow?id=35ec8aeeaa59f6ae, https://usegalaxy.org/published/workflow?id=3b49ba6b36b863f7, https://usegalaxy.org/published/workflow?id=4339d5625c15ae78, https://usegalaxy.org/published/workflow?id=433a71f7f2d17834, https://usegalaxy.org/published/workflow?id=47e190ec408a71b1, https://usegalaxy.org/published/workflow?id=4ca3b9bb720e9233, https://usegalaxy.org/published/workflow?id=4e0ce0ab562f3912, https://usegalaxy.org/published/workflow?id=55911cad792d4f59, https://usegalaxy.org/published/workflow?id=5ad1bcc7e3edd504, https://usegalaxy.org/published/workflow?id=5d87df0cce36f772, https://usegalaxy.org/published/workflow?id=6d971192efa75c8a, https://usegalaxy.org/published/workflow?id=6e3ca91737d56374, https://usegalaxy.org/published/workflow?id=6e6651ae846d8f83, https://usegalaxy.org/published/workflow?id=7003470003f4a57b, https://usegalaxy.org/published/workflow?id=75c2cf36253194c2, https://usegalaxy.org/published/workflow?id=7bc71a005c6f18d0, https://usegalaxy.org/published/workflow?id=7cae620eea6326af, https://usegalaxy.org/published/workflow?id=81183f40d2f3e395, https://usegalaxy.org/published/workflow?id=81c357e76c08ec02, https://usegalaxy.org/published/workflow?id=857db984ff571191, https://usegalaxy.org/published/workflow?id=85dc651884b93cf5, https://usegalaxy.org/published/workflow?id=889aa91c6d3f5654, https://usegalaxy.org/published/workflow?id=88ac2698fa170993, https://usegalaxy.org/published/workflow?id=899db1fa0c09130a, https://usegalaxy.org/published/workflow?id=8a3e457a9453c313, https://usegalaxy.org/published/workflow?id=8bfd40faf59c9857, https://usegalaxy.org/published/workflow?id=92d0308b5190c4be, https://usegalaxy.org/published/workflow?id=942db650f4ed97e1, https://usegalaxy.org/published/workflow?id=96b3cad73980c9d0, https://usegalaxy.org/published/workflow?id=a1a1c29486d7dd05, https://usegalaxy.org/published/workflow?id=a4a2fa50bb0f095c, https://usegalaxy.org/published/workflow?id=a97f55f0d098b07e, https://usegalaxy.org/published/workflow?id=ab50fc9309706fbc, https://usegalaxy.org/published/workflow?id=b0c7f02cb766c819, https://usegalaxy.org/published/workflow?id=b11171cc4ccd84c7, https://usegalaxy.org/published/workflow?id=b62535ba597d3323, https://usegalaxy.org/published/workflow?id=bc461addefad698a, https://usegalaxy.org/published/workflow?id=bd587951f475533a, https://usegalaxy.org/published/workflow?id=be4e3c22eef28b7c, https://usegalaxy.org/published/workflow?id=c060cfc7463ab118, https://usegalaxy.org/published/workflow?id=c46d9db2531a44b0, https://usegalaxy.org/published/workflow?id=c60eca6b739a2f11, https://usegalaxy.org/published/workflow?id=c978366ac25fed40, https://usegalaxy.org/published/workflow?id=ca1f478276b38c4d, https://usegalaxy.org/published/workflow?id=cf21a13f09fcc070, https://usegalaxy.org/published/workflow?id=d3811603bbd4a940, https://usegalaxy.org/published/workflow?id=d5cba8a5ba6880fd, https://usegalaxy.org/published/workflow?id=d7c03007ef8a618e, https://usegalaxy.org/published/workflow?id=d7ea4bdc208ae5e8, https://usegalaxy.org/published/workflow?id=d87b4e14e8e1d39e, https://usegalaxy.org/published/workflow?id=db7989d9479c80aa, https://usegalaxy.org/published/workflow?id=e004b6e4717296cb, https://usegalaxy.org/published/workflow?id=e586940a7c93ef73, https://usegalaxy.org/published/workflow?id=e67ce2ce587a6f39, https://usegalaxy.org/published/workflow?id=e9e8ac517480c291, https://usegalaxy.org/published/workflow?id=eb77b976984afa9c, https://usegalaxy.org/published/workflow?id=ebe6ac57f3c17dc4, https://usegalaxy.org/published/workflow?id=eca0449a7460480c, https://usegalaxy.org/published/workflow?id=f03bf569d526e51a, https://usegalaxy.org/published/workflow?id=f966a8498497ee13, https://usegalaxy.org/published/workflow?id=fcc39f74d5cddf12 |
|
|
join_files_on_column_fuzzy |
join_files_on_column_fuzzy |
Join two files on a common column, allowing a certain difference. |
2017-11-26 |
|
1.0.1 |
python |
|
To update |
Text Manipulation |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy |
https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy |
|
|
|
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
311 |
419 |
1814 |
2719 |
0 |
0 |
0 |
0 |
45 |
45 |
1204 |
1204 |
6 |
6 |
16 |
16 |
3939 |
3034 |
470 |
362 |
https://dev.workflowhub.eu/workflows/1123?version=1, https://usegalaxy.eu/published/workflow?id=a5ca8b9807ed3f73, https://usegalaxy.eu/published/workflow?id=e573c6b697524e3a, https://usegalaxy.org.au/published/workflow?id=3678781bf7619a89, https://workflowhub.eu/workflows/1587?version=1 |
metabolomics/msi-finding-nglycans |
|
kernel_canonical_correlation_analysis |
kcca1 |
Kernel Canonical Correlation Analysis |
2014-05-19 |
|
1.0.0 |
rpy |
|
To update |
Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/kernel_canonical_correlation_analysis |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/kernel_canonical_correlation_analysis |
|
|
|
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
4 |
4 |
46 |
70 |
33 |
78 |
186 |
352 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
422 |
232 |
82 |
37 |
|
|
|
kernel_principal_component_analysis |
kpca1 |
Kernel Principal Component Analysis |
2014-05-19 |
|
1.0.0 |
rpy |
|
To update |
Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/kernel_principal_component_analysis |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/kernel_principal_component_analysis |
|
|
|
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
25 |
32 |
111 |
159 |
82 |
251 |
249 |
717 |
0 |
0 |
0 |
0 |
4 |
4 |
7 |
7 |
883 |
367 |
287 |
111 |
|
|
|
kinwalker |
|
Kinwalker splits the folding process into a series of events where each event can either be a folding event or a transcription event. |
2015-02-28 |
http://www.bioinf.uni-leipzig.de/Software/Kinwalker/ |
|
|
|
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/kinwalker |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/kinwalker |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
kraken2tax |
Kraken2Tax |
Convert Kraken output to Galaxy taxonomy data. |
2015-08-05 |
https://bitbucket.org/natefoo/taxonomy |
1.2+galaxy0 |
gawk |
|
To update |
Metagenomics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/taxonomy/kraken2tax/ |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/taxonomy/kraken2tax |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1179 |
1182 |
24986 |
24999 |
1734 |
2302 |
16477 |
25867 |
472 |
472 |
17180 |
17180 |
0 |
0 |
0 |
0 |
68046 |
58643 |
3956 |
3385 |
https://usegalaxy.eu/published/workflow?id=0bafeb17c21ebc9c, https://usegalaxy.eu/published/workflow?id=2e0075791f7fa384, https://usegalaxy.eu/published/workflow?id=4a764275d4bf9f31, https://usegalaxy.eu/published/workflow?id=628062a8cf93261f, https://usegalaxy.eu/published/workflow?id=b2b46e71046b1999, https://usegalaxy.eu/published/workflow?id=bd4e3cdc7f29049b, https://usegalaxy.eu/published/workflow?id=ca80039c4933aa0a, https://usegalaxy.eu/published/workflow?id=d88145e7475e0b7b, https://usegalaxy.eu/published/workflow?id=ee0005a5487653ba, https://usegalaxy.org/published/workflow?id=a63927dd19759714, https://usegalaxy.org/published/workflow?id=b68ec42db8953569, https://usegalaxy.org/published/workflow?id=d4f0a7ccb09f1e55, https://usegalaxy.org/published/workflow?id=e12324f5e3b930fd, https://workflowhub.eu/workflows/100?version=1, https://workflowhub.eu/workflows/101?version=1, https://workflowhub.eu/workflows/124?version=1 |
|
|
labels |
bg_labels |
remaps and annotates alignments |
2015-02-28 |
https://github.com/bgruening/galaxytools/tree/master/tools/labels |
1.0.5.0 |
labels |
|
To update |
Sequence Analysis |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/labels |
https://github.com/bgruening/galaxytools/tree/master/tools/labels |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
lastz_paired_reads |
lastz_paired_reads_wrapper |
Galaxy wrapper for the Lastz alignment tool on paired reads |
2012-11-26 |
|
1.1.1 |
lastz |
1.04.52 |
To update |
Next Gen Mappers |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/lastz_paired_reads |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/lastz_paired_reads |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
2 |
4 |
2 |
9 |
0 |
0 |
0 |
0 |
5 |
5 |
8 |
10 |
0 |
0 |
0 |
0 |
19 |
10 |
9 |
7 |
|
|
|
lca_wrapper |
lca1 |
Find lowest diagnostic rank |
2014-01-27 |
https://bitbucket.org/natefoo/taxonomy |
1.0.1 |
taxonomy |
0.10.1 |
To update |
Metagenomics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/taxonomy/lca_wrapper |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/taxonomy/lca_wrapper |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
4 |
20 |
68 |
137 |
14 |
1112 |
112 |
6136 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6273 |
180 |
1132 |
18 |
https://usegalaxy.org/published/workflow?id=19c9c8cc3c813bda, https://usegalaxy.org/published/workflow?id=2f7638035fb889ac, https://usegalaxy.org/published/workflow?id=55aa743125c2465d, https://usegalaxy.org/published/workflow?id=59347cc210c4cdbc, https://usegalaxy.org/published/workflow?id=7294f75ad01ca7ed, https://usegalaxy.org/published/workflow?id=7b67ffcf1b7c2232, https://usegalaxy.org/published/workflow?id=85d825931edf4a64, https://usegalaxy.org/published/workflow?id=896d29573ea3e574, https://usegalaxy.org/published/workflow?id=d851f8436497dd1c |
|
|
lda_analysis |
lda_analy1 |
Perform Linear Discriminant Analysis |
2014-07-28 |
|
1.0.1 |
R |
|
To update |
Graphics, Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/lda_analysis |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/lda_analysis |
|
|
|
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
47 |
51 |
140 |
164 |
99 |
323 |
777 |
1570 |
0 |
3 |
0 |
4 |
4 |
4 |
17 |
17 |
1755 |
934 |
381 |
150 |
|
|
|
lighter |
lighter |
Lighter is a kmer-based error correction method for whole genome sequencing data |
2016-06-04 |
https://github.com/mourisl/Lighter |
1.0 |
lighter |
1.1.3 |
To update |
Sequence Analysis, Fasta Manipulation |
k-mer counting, Sequence read processing, Sequencing quality control, Sequencing error detection |
k-mer counting, Sequence read processing, Sequencing quality control, Sequencing error detection |
Sequencing, Whole genome sequencing, DNA, Genomics |
Whole genome sequencing, DNA, Genomics |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/lighter |
https://github.com/bgruening/galaxytools/tree/master/tools/lighter |
lighter |
Lighter |
Kmer-based error correction method for whole genome sequencing data. Lighter uses sampling (rather than counting) to obtain a set of kmers that are likely from the genome. Using this information, Lighter can correct the reads containing sequence errors. |
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
29 |
32 |
144 |
180 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
180 |
144 |
32 |
29 |
|
|
|
linear_regression |
LinearRegression1 |
Perform Linear Regression |
2014-04-01 |
|
1.0.1 |
R |
|
To update |
Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/linear_regression |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/linear_regression |
|
|
|
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
33 |
279 |
141 |
1131 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1131 |
141 |
279 |
33 |
https://usegalaxy.org/published/workflow?id=857db984ff571191 |
|
|
llm_hub |
llm_hub |
LiteLLM - Call all LLM APIs using the OpenAI format. |
2025-08-20 |
https://github.com/bgruening/galaxytools/tree/master/tools/llm_hub |
1.101.0 |
python |
|
To update |
Machine Learning |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/llm_hub |
https://github.com/bgruening/galaxytools/tree/master/tools/llm_hub |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
locarna |
locarna_exparnap, locarna_multiple, locarna_pairwise, locarna_pairwise_p, locarna_reliability_profile |
LocARNA - A suite for multiple alignment and folding of RNAs |
2015-02-28 |
http://www.bioinf.uni-freiburg.de/Software/LocARNA/ |
2.0.1 |
locarna |
2.0.1 |
Up-to-date |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
36 |
47 |
317 |
358 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
358 |
317 |
47 |
36 |
https://usegalaxy.eu/published/workflow?id=5cd167ed9e159e73 |
|
|
logistic_regression_vif |
LogisticRegression |
Perform Logistic Regression with vif |
2014-04-01 |
|
1.0.1 |
numpy |
|
To update |
Sequence Analysis, Variant Analysis, Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/logistic_regression_vif |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/logistic_regression_vif |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
48 |
45 |
173 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
173 |
45 |
48 |
12 |
|
|
|
maf_cpg_filter |
cpgFilter |
Mask CpG/non-CpG sites from MAF file |
2014-04-01 |
|
1.0.0 |
bx-python |
0.14.0 |
To update |
Sequence Analysis, Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/maf_cpg_filter |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/maf_cpg_filter |
|
|
|
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
28 |
47 |
356 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
356 |
47 |
28 |
6 |
|
|
|
mafft |
rbc_mafft_add, rbc_mafft |
Multiple alignment program for amino acid or nucleotide sequences |
2015-06-16 |
https://mafft.cbrc.jp/alignment/software/ |
7.526 |
mafft |
7.525 |
To update |
RNA |
Multiple sequence alignment |
Multiple sequence alignment |
Sequence analysis |
Sequence analysis |
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/mafft |
https://github.com/bgruening/galaxytools/tree/master/tools/mafft |
MAFFT |
MAFFT |
MAFFT (Multiple Alignment using Fast Fourier Transform) is a high speed multiple sequence alignment program. |
|
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
2067 |
2178 |
188287 |
190662 |
4362 |
5803 |
114726 |
130987 |
1051 |
1182 |
21429 |
22090 |
147 |
147 |
1783 |
1783 |
345522 |
326225 |
9310 |
7627 |
https://dev.workflowhub.eu/workflows/1173?version=2, https://dev.workflowhub.eu/workflows/1296?version=2, https://dev.workflowhub.eu/workflows/40?version=1, https://dev.workflowhub.eu/workflows/42?version=1, https://dev.workflowhub.eu/workflows/43?version=1, https://usegalaxy.eu/published/workflow?id=402b14906a03b2ef, https://usegalaxy.eu/published/workflow?id=5cd167ed9e159e73, https://usegalaxy.eu/published/workflow?id=86900be4282d4b1d, https://usegalaxy.eu/published/workflow?id=9155ed0e7a6a7b60, https://usegalaxy.eu/published/workflow?id=941400d10c346b2c, https://usegalaxy.eu/published/workflow?id=a06b1ed5cd25922f, https://usegalaxy.eu/published/workflow?id=a15dabcadb63b46d, https://usegalaxy.eu/published/workflow?id=a2c46deea34d9d80, https://usegalaxy.eu/published/workflow?id=c789ab71876c6ead, https://usegalaxy.eu/published/workflow?id=cd25f70f71683ab6, https://usegalaxy.eu/published/workflow?id=d102a20c31d4673c, https://usegalaxy.eu/published/workflow?id=e7f03b4bd9b3d6fd, https://usegalaxy.eu/published/workflow?id=e97b938ca4723827, https://usegalaxy.eu/published/workflow?id=ec50dd6d56f50db1, https://usegalaxy.fr/published/workflow?id=297b71156b297a73, https://usegalaxy.fr/published/workflow?id=5ec6d378e60f7ccc, https://usegalaxy.fr/published/workflow?id=63b49f322ec366b5, https://usegalaxy.fr/published/workflow?id=7ebb54181b404733, https://usegalaxy.fr/published/workflow?id=894143d81af8dff0, https://usegalaxy.fr/published/workflow?id=b131218bec7eacb4, https://usegalaxy.fr/published/workflow?id=b3974acb70608e38, https://usegalaxy.fr/published/workflow?id=c7be6e229a045fad, https://usegalaxy.fr/published/workflow?id=d425a77157cae2ee, https://usegalaxy.fr/published/workflow?id=e134e9637adfc5b6, https://usegalaxy.org.au/published/workflow?id=3242ec69dec6e13f, https://usegalaxy.org.au/published/workflow?id=42137e36791652bc, https://usegalaxy.org.au/published/workflow?id=a01c3004bcef9dd3, https://usegalaxy.org.au/published/workflow?id=d62b6717202f42c9, https://usegalaxy.org.au/published/workflow?id=f21446cc44da50ce, https://usegalaxy.org/published/workflow?id=1518c8c50747a1c1, https://usegalaxy.org/published/workflow?id=23212ae74fc2d2b5, https://usegalaxy.org/published/workflow?id=2d1ca299c1b058f6, https://usegalaxy.org/published/workflow?id=603e5c61c57bcf3f, https://usegalaxy.org/published/workflow?id=6a1eb7e7bececba1, https://usegalaxy.org/published/workflow?id=7251c6e0dad8f927, https://usegalaxy.org/published/workflow?id=75c2cf36253194c2, https://usegalaxy.org/published/workflow?id=8d8e8927d63803ef, https://usegalaxy.org/published/workflow?id=956987e628530c79, https://usegalaxy.org/published/workflow?id=97263f3308077ff0, https://usegalaxy.org/published/workflow?id=9c4038fa15af6995, https://usegalaxy.org/published/workflow?id=b0f85c802c1ea7f8, https://usegalaxy.org/published/workflow?id=be54e57345ce7ca5, https://usegalaxy.org/published/workflow?id=f737593a1db217c8, https://workflowhub.eu/workflows/1260?version=2, https://workflowhub.eu/workflows/1374?version=1, https://workflowhub.eu/workflows/1518?version=1, https://workflowhub.eu/workflows/1559?version=1, https://workflowhub.eu/workflows/1627?version=1, https://workflowhub.eu/workflows/1650?version=1 |
evolution/abc_intro_phylo, genome-annotation/gene-centric, sequence-analysis/tapscan-streptophyte-algae, sequence-analysis/viral_primer_design, variant-analysis/aiv-analysis, variant-analysis/pox-tiled-amplicon |
|
mapping_to_ucsc |
mapToUCSC |
Format mapping data as UCSC custom track |
2014-05-19 |
|
1.0.0 |
|
|
To update |
Visualization, Convert Formats, Next Gen Mappers |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/mapping_to_ucsc |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/mapping_to_ucsc |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
markitdown |
markitdown |
Convert documents to Markdown using markitdown |
2025-04-21 |
https://github.com/microsoft/markitdown |
0.1.1 |
|
|
To update |
Convert Formats |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/markitdown |
https://github.com/bgruening/galaxytools/tree/master/tools/markitdown |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
mavedb_importer |
mavedb_importer |
data source for MaveDB |
2023-12-13 |
|
0.9 |
|
|
To update |
Data Source |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/mave_tools/mavedb/ |
https://github.com/bgruening/galaxytools/tree/master/tools/mave_tools/mavedb |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
10 |
10 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
10 |
2 |
2 |
|
|
|
mea |
mea |
Maximum expected accuracy prediction |
2015-07-29 |
http://www.bioinf.uni-leipzig.de/Software/mea |
0.6.4.1 |
mea |
0.6.4 |
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mea |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mea |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
4 |
5 |
51 |
86 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
86 |
51 |
5 |
4 |
|
|
|
megablast_xml_parser |
megablast_xml_parser |
Parse blast XML output |
2014-05-19 |
|
1.0.1 |
python |
|
To update |
Next Gen Mappers, Convert Formats |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/megablast_xml_parser |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/megablast_xml_parser |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
107 |
149 |
1397 |
1493 |
82 |
465 |
277 |
2884 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4377 |
1674 |
614 |
189 |
https://usegalaxy.eu/published/workflow?id=33312e5643279e8a |
|
|
merge |
gops_merge_1 |
Merge the overlapping intervals of a dataset |
2014-04-01 |
https://github.com/galaxyproject/gops |
1.0.0 |
bx-python |
0.14.0 |
To update |
Genomic Interval Operations |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/merge |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/gops/merge |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
424 |
458 |
566469 |
567263 |
650 |
4398 |
46387 |
108629 |
96 |
137 |
19795 |
20050 |
9 |
10 |
1141 |
1151 |
697093 |
633792 |
5003 |
1179 |
https://dev.workflowhub.eu/workflows/1440?version=1, https://dev.workflowhub.eu/workflows/1441?version=1, https://dev.workflowhub.eu/workflows/194?version=2, https://usegalaxy.eu/published/workflow?id=06544e74f583fd05, https://usegalaxy.eu/published/workflow?id=3aaea772745ca295, https://usegalaxy.eu/published/workflow?id=522500fac247be6f, https://usegalaxy.eu/published/workflow?id=5ded4002e684a02c, https://usegalaxy.eu/published/workflow?id=6c91fe92ef069d64, https://usegalaxy.eu/published/workflow?id=7b7d6a5c6c65d74b, https://usegalaxy.eu/published/workflow?id=b8fc492025ad6ff0, https://usegalaxy.eu/published/workflow?id=c832ecfa83bcda14, https://usegalaxy.eu/published/workflow?id=d52ff93f4ffdd981, https://usegalaxy.fr/published/workflow?id=0df61a88d64de252, https://usegalaxy.fr/published/workflow?id=a3e9062133fdf7c2, https://usegalaxy.fr/published/workflow?id=bf8ffe72b7ce4570, https://usegalaxy.org.au/published/workflow?id=2955ea7be1cdda29, https://usegalaxy.org.au/published/workflow?id=2b71eb1dc2aa28a1, https://usegalaxy.org.au/published/workflow?id=4b681937a01df465, https://usegalaxy.org.au/published/workflow?id=5cd7f1824db7a960, https://usegalaxy.org.au/published/workflow?id=61a21c9928182ae4, https://usegalaxy.org.au/published/workflow?id=6795e545b0cafded, https://usegalaxy.org.au/published/workflow?id=851552cc3e830253, https://usegalaxy.org.au/published/workflow?id=a77ce877e786d44a, https://usegalaxy.org.au/published/workflow?id=e154a9b605ea0886, https://usegalaxy.org.au/published/workflow?id=ebd1ee73906fdea0, https://usegalaxy.org.au/published/workflow?id=f65b54fcffaa11e5, https://usegalaxy.org/published/workflow?id=0392de36b6f55a8f, https://usegalaxy.org/published/workflow?id=31cc891be77cbc6f, https://usegalaxy.org/published/workflow?id=44b27a1296633366, https://usegalaxy.org/published/workflow?id=4ffdb2cf21759d26, https://usegalaxy.org/published/workflow?id=507c817755b2410d, https://usegalaxy.org/published/workflow?id=5834e562fa403732, https://usegalaxy.org/published/workflow?id=65f3a5772ae05a7a, https://usegalaxy.org/published/workflow?id=6ba03802169c0063, https://usegalaxy.org/published/workflow?id=7b20a62d69d53efc, https://usegalaxy.org/published/workflow?id=d136d24e4c96962a, https://usegalaxy.org/published/workflow?id=f25a3da4b00eddbb, https://usegalaxy.org/published/workflow?id=f365c53b5024d7f1, https://workflowhub.eu/workflows/138?version=9, https://workflowhub.eu/workflows/356?version=1 |
|
|
merge_cols |
mergeCols1 |
Merge columns together. |
2012-12-04 |
|
1.0.3 |
python |
|
To update |
Text Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/merge_cols |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/merge_cols |
|
|
|
|
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
1 |
1 |
0 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
1953 |
2236 |
23714 |
34471 |
865 |
3245 |
21137 |
134129 |
123 |
162 |
1605 |
2020 |
90 |
91 |
474 |
484 |
171104 |
46930 |
5734 |
3031 |
https://dev.workflowhub.eu/workflows/1113?version=2, https://dev.workflowhub.eu/workflows/1229?version=1, https://dev.workflowhub.eu/workflows/1283?version=2, https://dev.workflowhub.eu/workflows/1321?version=1, https://dev.workflowhub.eu/workflows/1363?version=1, https://usegalaxy.eu/published/workflow?id=0e492839192d26e0, https://usegalaxy.eu/published/workflow?id=14714876dda7186d, https://usegalaxy.eu/published/workflow?id=57cfe5062c8e01bf, https://usegalaxy.eu/published/workflow?id=5e09d5e991009cda, https://usegalaxy.eu/published/workflow?id=c5de0b794849e1b1, https://usegalaxy.eu/published/workflow?id=c94a1d028357c81e, https://usegalaxy.eu/published/workflow?id=d0ae255151450dad, https://usegalaxy.eu/published/workflow?id=d33ab07e4cf44f8c, https://usegalaxy.eu/published/workflow?id=f7a7c72489d6b3d4, https://usegalaxy.org.au/published/workflow?id=b808cd1c0090b068, https://usegalaxy.org.au/published/workflow?id=bdb498b1f0e8944f, https://usegalaxy.org/published/workflow?id=138311394c077827, https://usegalaxy.org/published/workflow?id=1d923ce15c17b1fe, https://usegalaxy.org/published/workflow?id=2d64e09025ae8ed4, https://usegalaxy.org/published/workflow?id=44b27a1296633366, https://usegalaxy.org/published/workflow?id=5bc973dd30f22525, https://usegalaxy.org/published/workflow?id=66748e20a243eafe, https://usegalaxy.org/published/workflow?id=68a9f03d99676bdc, https://usegalaxy.org/published/workflow?id=81183f40d2f3e395, https://usegalaxy.org/published/workflow?id=8b1eedebcb94ba93, https://usegalaxy.org/published/workflow?id=941ced9f12eecd3c, https://usegalaxy.org/published/workflow?id=9864961cc6132562, https://usegalaxy.org/published/workflow?id=b8742810ac30429d, https://usegalaxy.org/published/workflow?id=c17fa637bcdec86e, https://usegalaxy.org/published/workflow?id=c3ea8fa3bb202dc6, https://usegalaxy.org/published/workflow?id=cd1badac800122c2, https://usegalaxy.org/published/workflow?id=e3e646407e3f921d, https://usegalaxy.org/published/workflow?id=e75a7802d2941f31, https://workflowhub.eu/workflows/1208?version=1, https://workflowhub.eu/workflows/1638?version=1, https://workflowhub.eu/workflows/1680?version=1, https://workflowhub.eu/workflows/1696?version=1, https://workflowhub.eu/workflows/1703?version=1, https://workflowhub.eu/workflows/1704?version=1 |
assembly/ecoli_comparison, ecology/Ecoregionalization_tutorial, ecology/PAMPA-toolsuite-tutorial, ecology/regionalGAM, transcriptomics/rna-seq-counts-to-genes |
|
methtools |
methtools_calling, r_correlation_matrix, methtools_destrand, methtools_dmr, methtools_filter, methtools_plot, smooth_running_window, methtools_tiling |
tools for methylation analysis |
2015-02-28 |
https://github.com/bgruening/galaxytools/tree/master/tools/methtools |
0.1.1 |
methtools |
|
To update |
Sequence Analysis |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/methtools |
https://github.com/bgruening/galaxytools/tree/master/tools/methtools |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
37 |
124 |
530 |
5461 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5461 |
530 |
124 |
37 |
|
|
|
methylkit |
methylkit |
A method for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. |
2016-12-20 |
http://bioconductor.org/packages/release/bioc/html/methylKit.html |
0.99.2 |
bioconductor-methylkit |
1.32.0 |
To update |
Epigenetics |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/methylkit |
https://github.com/bgruening/galaxytools/tree/master/tools/methylkit |
|
|
|
|
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
7 |
7 |
7 |
7 |
1 |
1 |
|
|
|
metilene |
metilene |
Differential DNA methylation calling |
2015-12-14 |
|
0.2.6.1 |
metilene |
0.2.8 |
To update |
RNA, Statistics |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/metilene |
https://github.com/bgruening/galaxytools/tree/master/tools/metilene |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
283 |
459 |
3235 |
4895 |
118 |
118 |
667 |
667 |
54 |
54 |
418 |
418 |
1 |
1 |
1 |
1 |
5981 |
4321 |
632 |
456 |
https://dev.workflowhub.eu/workflows/1157?version=2, https://usegalaxy.eu/published/workflow?id=489926f9299594fe, https://usegalaxy.eu/published/workflow?id=bffeb3cd0c708441, https://usegalaxy.eu/published/workflow?id=c46345ba876d5bfe, https://usegalaxy.org.au/published/workflow?id=91c8daa5f2bcf7c0, https://usegalaxy.org/published/workflow?id=e20e1371e50bdcee, https://workflowhub.eu/workflows/1566?version=1 |
epigenetics/methylation-seq |
|
mgnify_seqprep |
mgnify_seqprep |
A modifiied vesion of SeqPrep. Made for use with the MGnify pipelines. |
2024-05-14 |
https://github.com/jstjohn/SeqPrep |
1.2 |
|
|
To update |
Fastq Manipulation, Sequence Analysis |
Nucleic acid design |
Nucleic acid design |
Genomics, Sequence assembly, Sequencing, Probes and primers |
Genomics, Sequence assembly, Sequencing, Probes and primers |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/mgnify_seqprep |
https://github.com/bgruening/galaxytools/tree/master/tools/mgnify_seqprep |
seqprep |
SeqPrep |
Strips adapters and optionally merges overlapping paired-end (or paired-end contamination in mate-pair libraries) illumina style reads. |
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
1208 |
1208 |
27 |
27 |
46 |
46 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1254 |
1254 |
31 |
31 |
https://usegalaxy.eu/published/workflow?id=0609a4b1941d1a68, https://usegalaxy.eu/published/workflow?id=9fddc44294236e8f, https://usegalaxy.org/published/workflow?id=20b7ae4b517a80fd, https://usegalaxy.org/published/workflow?id=a71fcbc60caae8b6, https://workflowhub.eu/workflows/1272?version=2 |
|
|
miclip |
mi_clip |
Identification of binding sites in CLIP-Seq data. |
2015-02-28 |
https://cran.r-project.org/src/contrib/Archive/MiClip/ |
1.2.0 |
Rscript |
|
To update |
Sequence Analysis |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/miclip |
https://github.com/bgruening/galaxytools/tree/master/tools/miclip |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
microsatellite_birthdeath |
microsatellite_birthdeath |
Identify microsatellite births and deaths |
2013-09-25 |
|
1.0.0 |
|
|
To update |
Sequence Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/microsatellite_birthdeath |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/microsatellite_birthdeath |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
microsats_alignment_level |
microsats_align1 |
Extract Orthologous Microsatellites from pair-wise alignments |
2014-04-01 |
|
1.0.0 |
sputnik |
|
To update |
Sequence Analysis, Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/microsats_alignment_level |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/microsats_alignment_level |
|
|
|
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
50 |
142 |
118 |
978 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
978 |
118 |
142 |
50 |
|
|
|
microsats_mutability |
microsats_mutability1 |
Estimate microsatellite mutability by specified attributes |
2014-04-01 |
|
1.1.0 |
bx-python |
0.14.0 |
To update |
Sequence Analysis, Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/microsats_mutability |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/microsats_mutability |
|
|
|
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
24 |
89 |
35 |
315 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
315 |
35 |
89 |
24 |
|
|
|
minced |
minced |
MinCED - Mining CRISPRs in Environmental Datasets |
2015-02-28 |
http://bioweb2.pasteur.fr/docs/modules/minced/0.1.5/_README |
0.2.0 |
minced |
0.4.2 |
To update |
Sequence Analysis |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/minced |
https://github.com/bgruening/galaxytools/tree/master/tools/minced |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
131 |
143 |
1864 |
1972 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1972 |
1864 |
143 |
131 |
|
|
|
mine |
maximal_information_based_nonparametric_exploration |
Maximal Information-based Nonparametric Exploration |
2014-07-28 |
|
0.0.1 |
MINE |
|
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/mine |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/mine |
|
|
|
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
7 |
8 |
8 |
11 |
7 |
20 |
18 |
64 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
75 |
26 |
28 |
14 |
|
|
|
minipolish |
minipolish |
Polishing miniasm assemblies |
2022-10-19 |
https://github.com/rrwick/Minipolish |
0.2.0 |
minipolish |
0.2.0 |
Up-to-date |
Sequence Analysis |
Localised reassembly, Read depth analysis |
Localised reassembly, Read depth analysis |
Sequence assembly, Sequencing |
Sequence assembly, Sequencing |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/minipolish |
https://github.com/bgruening/galaxytools/tree/master/tools/minipolish |
minipolish |
minipolish |
A tool that bridges the output of miniasm (long-read assembly) and racon (assembly polishing) together to polish a draft assembly. It also provides read depth information in contigs. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
35 |
35 |
251 |
251 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
251 |
251 |
35 |
35 |
|
|
|
mitohifi |
mitohifi |
Assembly mitogenomes from Pacbio HiFi read. |
2021-05-29 |
https://github.com/marcelauliano/MitoHiFi/tree/mitohifi_v2 |
3.2.3 |
|
|
To update |
Assembly |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/mitohifi |
https://github.com/bgruening/galaxytools/tree/master/tools/mitohifi |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
208 |
208 |
1231 |
1231 |
118 |
118 |
723 |
723 |
30 |
30 |
597 |
597 |
0 |
0 |
0 |
0 |
2551 |
2551 |
356 |
356 |
https://dev.workflowhub.eu/workflows/1360?version=1, https://usegalaxy.eu/published/workflow?id=2062c7e1c50b05f3, https://usegalaxy.eu/published/workflow?id=32a0c4bbe6f9add9, https://usegalaxy.eu/published/workflow?id=e71ae1076d5f0584, https://usegalaxy.org.au/published/workflow?id=2f49a0a03d99c57a, https://usegalaxy.org.au/published/workflow?id=614898119cf0dabf, https://usegalaxy.org.au/published/workflow?id=8004dce1906ec057, https://usegalaxy.org/published/workflow?id=5f621330d6339655, https://usegalaxy.org/published/workflow?id=67b9046dc5dbc009, https://usegalaxy.org/published/workflow?id=982a3eb2b4c4f5ae, https://workflowhub.eu/workflows/1648?version=1, https://workflowhub.eu/workflows/738?version=3 |
assembly/mitochondrion-assembly |
|
molecule_to_gspan |
bg_mol2gspan |
converter |
2015-02-28 |
https://github.com/bgruening/galaxytools/tree/master/tools/molecule2gspan |
0.2 |
openbabel |
2.3.90dev7d621d9 |
To update |
Convert Formats |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/molecule2gspan |
https://github.com/bgruening/galaxytools/tree/master/tools/molecule2gspan |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
motus |
mereg_mOTUs_tables, motus_profiler |
Tool for profiling the abundance of microbial taxa. |
2024-09-06 |
https://github.com/motu-tool/mOTUs |
3.1.0 |
motus |
3.1.0 |
Up-to-date |
Metagenomics |
Taxonomic classification |
Taxonomic classification |
Metagenomics |
Metagenomics |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/mOTUs |
https://github.com/bgruening/galaxytools/tree/master/tools/motus |
mOTUs |
Metagenomic operational taxonomic units (mOTUs) |
Metagenomic operational taxonomic units (mOTUs) enable high-accuracy taxonomic profiling of known (sequenced) and unknown microorganisms at species-level resolution from shotgun metagenomic or metatranscriptomic data. The method clusters single-copy phylogenetic marker gene sequences from metagenomes and reference genomes into mOTUs to quantify their abundances in meta-omics data with very high precision and recall. |
|
0 |
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
9 |
9 |
76 |
76 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
76 |
76 |
9 |
9 |
|
|
|
mqc |
mqc |
Ribosome profiling mapping quality control tool |
2017-08-11 |
https://github.com/Biobix/mQC |
1.9 |
mqc |
1.10 |
To update |
Sequence Analysis |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc/ |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mqc |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
8 |
9 |
58 |
76 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
76 |
58 |
9 |
8 |
|
|
|
multispecies_orthologous_microsats |
multispecies_orthologous_microsats |
Extract orthologous microsatellites |
2013-09-25 |
|
1.0.0 |
bx-sputnik |
|
To update |
Sequence Analysis, Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/multispecies_orthologous_microsats |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/multispecies_orthologous_microsats |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
mummer |
mummerplot_wrapper |
Draw dotplots using mummer, mucmer, or promer with mummerplot |
2014-05-22 |
http://mummer.sourceforge.net/ |
0.0.8 |
ghostscript |
9.18 |
To update |
Graphics, Sequence Analysis, Visualization |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/mummer |
https://github.com/peterjc/pico_galaxy/tree/master/tools/mummer |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
221 |
239 |
970 |
1030 |
229 |
229 |
817 |
817 |
28 |
49 |
117 |
202 |
1 |
1 |
3 |
3 |
2052 |
1907 |
518 |
479 |
|
|
|
music |
music_construct_eset, music_inspect_eset, music_manipulate_eset, music_compare, music_deconvolution |
Multi-subject Single Cell deconvolution (MuSiC) |
2021-09-12 |
https://github.com/xuranw/MuSiC |
0.1.1 |
music-deconvolution |
0.1.1 |
Up-to-date |
Transcriptomics, Single Cell |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/music_deconvolution |
https://github.com/bgruening/galaxytools/tree/master/tools/music_deconvolution |
music_deconvolution |
MuSiC Deconvolution |
MuSiC utilizes cell-type specific gene expression from single-cell RNA sequencing (RNA-seq) data to characterize cell type compositions from bulk RNA-seq data in complex tissues. By appropriate weighting of genes showing cross-subject and cross-cell consistency, MuSiC enables the transfer of cell type-specific gene expression information from one dataset to another. |
|
5 |
5 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
0 |
0 |
111 |
111 |
4035 |
4035 |
37 |
37 |
438 |
438 |
7 |
7 |
1778 |
1778 |
0 |
0 |
0 |
0 |
6251 |
6251 |
155 |
155 |
https://dev.workflowhub.eu/workflows/1223?version=1, https://dev.workflowhub.eu/workflows/1230?version=1, https://dev.workflowhub.eu/workflows/1234?version=2, https://dev.workflowhub.eu/workflows/1261?version=1, https://dev.workflowhub.eu/workflows/1390?version=1, https://dev.workflowhub.eu/workflows/1396?version=1, https://usegalaxy.eu/published/workflow?id=030e978022e19375, https://usegalaxy.eu/published/workflow?id=2ae4a83327615155, https://usegalaxy.eu/published/workflow?id=39dd6365ff076dc4, https://usegalaxy.eu/published/workflow?id=cb978151b1686b71, https://usegalaxy.eu/published/workflow?id=d1ab8eabcbe0a004, https://workflowhub.eu/workflows/1498?version=1, https://workflowhub.eu/workflows/1542?version=1, https://workflowhub.eu/workflows/1548?version=1, https://workflowhub.eu/workflows/1553?version=1, https://workflowhub.eu/workflows/1557?version=1, https://workflowhub.eu/workflows/1575?version=1 |
single-cell/bulk-deconvolution-evaluate, single-cell/bulk-music, single-cell/bulk-music-2-preparescref, single-cell/bulk-music-3-preparebulk, single-cell/bulk-music-4-compare |
|
mutate_snp_codon |
mutate_snp_codon_1 |
Mutate Codons with SNPs |
2013-09-25 |
|
1.0.0 |
|
|
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/mutate_snp_codon |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/mutate_snp_codon |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
5 |
5 |
34 |
49 |
18 |
121 |
52 |
423 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
472 |
86 |
126 |
23 |
|
|
|
nanopolish |
nanopolish_eventalign, nanopolish_methylation, nanopolish_polya, nanopolish_variants |
Nanopolish software package for signal-level analysis of Oxford Nanopore sequencing data. |
2018-05-28 |
https://github.com/jts/nanopolish |
0.14.0 |
nanopolish |
0.14.0 |
Up-to-date |
|
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/nanopolish |
https://github.com/bgruening/galaxytools/tree/master/tools/nanopolish |
|
|
|
|
0 |
4 |
4 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
4 |
0 |
97 |
106 |
9073 |
9719 |
0 |
0 |
0 |
0 |
15 |
16 |
2470 |
2625 |
4 |
4 |
75 |
75 |
12419 |
11618 |
126 |
116 |
https://usegalaxy.eu/published/workflow?id=1cc3b4f1b50ba427, https://usegalaxy.eu/published/workflow?id=5500de2961f7470c, https://usegalaxy.eu/published/workflow?id=77db45ad90b4033d, https://usegalaxy.eu/published/workflow?id=816815a93cc68244, https://usegalaxy.eu/published/workflow?id=b2dfa74f55a73409, https://workflowhub.eu/workflows/50?version=1, https://workflowhub.eu/workflows/51?version=1 |
|
|
nastiseq |
nastiseq |
A method to identify cis-NATs using ssRNA-seq |
2017-02-21 |
https://ohlerlab.mdc-berlin.de/software/NASTIseq_104/ |
1.0 |
r-nastiseq |
1.0 |
Up-to-date |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/nastiseq |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/nastiseq |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
2 |
2 |
28 |
42 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
42 |
28 |
2 |
2 |
|
|
|
netboxr |
netboxr |
netboxr enables automated discovery of biological process modules by network analysis |
2022-08-24 |
|
1.6.0 |
bioconductor-netboxr |
1.9.0 |
To update |
Systems Biology |
|
|
|
|
bgruening |
|
https://github.com/bgruening/galaxytools/tree/master/tools/netboxr |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
6 |
6 |
13 |
13 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
13 |
6 |
6 |
|
|
|
nextdenovo |
nextdenovo |
String graph-based de novo assembler for long reads |
2023-02-09 |
https://github.com/Nextomics/NextDenovo |
2.5.0 |
nextdenovo |
2.5.2 |
To update |
Assembly |
De-novo assembly, Genome assembly |
De-novo assembly, Genome assembly |
Sequencing, Sequence assembly |
Sequencing, Sequence assembly |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/nextdenovo |
https://github.com/bgruening/galaxytools/tree/master/tools/nextdenovo |
nextdenovo |
NextDenovo |
NextDenovo is a string graph-based de novo assembler for long reads (CLR, HiFi and ONT). It uses a "correct-then-assemble" strategy similar to canu (no correction step for PacBio Hifi reads), but requires significantly less computing resources and storages. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
181 |
181 |
470 |
470 |
39 |
39 |
73 |
73 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
543 |
543 |
220 |
220 |
https://workflowhub.eu/workflows/789?version=1 |
|
|
nlstradamus |
nlstradamus |
Find nuclear localization signals (NLSs) in protein sequences |
2013-04-17 |
http://www.moseslab.csb.utoronto.ca/NLStradamus |
0.0.11 |
NLStradamus |
1.8 |
To update |
Fasta Manipulation, Sequence Analysis |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/nlstradamus |
https://github.com/peterjc/pico_galaxy/tree/master/tools/nlstradamus |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
nucleosome_prediction |
Nucleosome |
Prediction of Nucleosomes Positions on the Genome |
2016-09-27 |
https://genie.weizmann.ac.il/software/nucleo_exe.html |
3.0 |
nucleosome_prediction |
3.0 |
Up-to-date |
Sequence Analysis |
Prediction and recognition, Nucleosome position prediction, Sequence analysis |
Prediction and recognition, Nucleosome position prediction, Sequence analysis |
Structural genomics, Nucleic acid sites, features and motifs |
Structural genomics, Nucleic acid sites, features and motifs |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/nucleosome_prediction |
https://github.com/bgruening/galaxytools/tree/master/tools/nucleosome_prediction |
nucleosome_prediction |
nucleosome_prediction |
Prediction of Nucleosomes Positions on the Genome |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
18 |
26 |
77 |
865 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
865 |
77 |
26 |
18 |
|
|
|
numeric_clustering |
numeric_clustering |
Clustering tool for numberic values |
2015-12-19 |
http://scikit-learn.org/stable/index.html |
0.9 |
anaconda |
|
To update |
Statistics |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/numeric_clustering |
https://github.com/bgruening/galaxytools/tree/master/tools/numeric_clustering |
|
|
|
|
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
11 |
258 |
486 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
2 |
488 |
260 |
13 |
5 |
|
|
|
openms |
AccurateMassSearch, AdditiveSeries, BaselineFilter, CVInspector, CompNovo, CompNovoCID, ConsensusID, ConsensusMapNormalizer, ConvertTSVToTraML, ConvertTraMLToTSV, DTAExtractor, DeMeanderize, Decharger, DecoyDatabase, Digestor, DigestorMotif, EICExtractor, ERPairFinder, ExternalCalibration, FFEval, FalseDiscoveryRate, FeatureFinderCentroided, FeatureFinderIdentification, FeatureFinderIsotopeWavelet, FeatureFinderMRM, FeatureFinderMetabo, FeatureFinderMultiplex, FeatureFinderSuperHirn, FeatureLinkerLabeled, FeatureLinkerUnlabeled, FeatureLinkerUnlabeledQT, FidoAdapter, FileConverter, FileFilter, FileInfo, FileMerger, FuzzyDiff, HighResPrecursorMassCorrector, IDConflictResolver, IDDecoyProbability, IDExtractor, IDFileConverter, IDFilter, IDMapper, IDMassAccuracy, IDMerger, IDPosteriorErrorProbability, IDRTCalibration, IDRipper, IDScoreSwitcher, IDSplitter, ITRAQAnalyzer, InclusionExclusionListCreator, InspectAdapter, InternalCalibration, IsobaricAnalyzer, LabeledEval, LowMemPeakPickerHiRes, LowMemPeakPickerHiRes_RandomAccess, LuciphorAdapter, MRMMapper, MRMPairFinder, MRMTransitionGroupPicker, MSGFPlusAdapter, MSSimulator, MapAlignmentEvaluation, MapNormalizer, MapRTTransformer, MapStatistics, MascotAdapter, MascotAdapterOnline, MassCalculator, MassTraceExtractor, MetaProSIP, MetaboliteSpectralMatcher, MultiplexResolver, MzMLSplitter, MzTabExporter, NoiseFilterGaussian, NoiseFilterSGolay, OpenSwathAnalyzer, OpenSwathAssayGenerator, OpenSwathChromatogramExtractor, OpenSwathConfidenceScoring, OpenSwathDIAPreScoring, OpenSwathDecoyGenerator, OpenSwathFeatureXMLToTSV, OpenSwathFileSplitter, OpenSwathMzMLFileCacher, OpenSwathRTNormalizer, OpenSwathRewriteToFeatureXML, OpenSwathWorkflow, PTModel, PTPredict, PeakPickerHiRes, PeakPickerIterative, PeakPickerWavelet, PepNovoAdapter, PeptideIndexer, PhosphoScoring, PrecursorIonSelector, PrecursorMassCorrector, ProteinInference, ProteinQuantifier, ProteinResolver, QCCalculator, QCEmbedder, QCExporter, QCExtractor, QCImporter, QCMerger, QCShrinker, RNPxl, RNPxlXICFilter, RTEvaluation, RTModel, RTPredict, SemanticValidator, SequenceCoverageCalculator, SimpleSearchEngine, SpecLibCreator, SpectraFilterBernNorm, SpectraFilterMarkerMower, SpectraFilterNLargest, SpectraFilterNormalizer, SpectraFilterParentPeakMower, SpectraFilterScaler, SpectraFilterSqrtMower, SpectraFilterThresholdMower, SpectraFilterWindowMower, SpectraMerger, SvmTheoreticalSpectrumGeneratorTrainer, TICCalculator, TMTAnalyzer, TOFCalibration, TextExporter, TopPerc, TransformationEvaluation, XMLValidator, XTandemAdapter |
OpenMS in version 2.1. |
2015-02-28 |
|
2.1.0 |
openms |
3.4.1 |
To update |
Proteomics |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/openms |
https://github.com/bgruening/galaxytools/tree/master/tools/openms |
|
|
|
|
7 |
34 |
135 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
19 |
135 |
134 |
0 |
576 |
665 |
32773 |
112807 |
8 |
8 |
214 |
214 |
34 |
34 |
1298 |
1298 |
0 |
0 |
0 |
0 |
114319 |
34285 |
707 |
618 |
https://dev.workflowhub.eu/workflows/1029?version=1, https://dev.workflowhub.eu/workflows/1030?version=1, https://dev.workflowhub.eu/workflows/1031?version=1, https://dev.workflowhub.eu/workflows/1032?version=1, https://dev.workflowhub.eu/workflows/1033?version=1, https://dev.workflowhub.eu/workflows/1037?version=1, https://dev.workflowhub.eu/workflows/1039?version=1, https://dev.workflowhub.eu/workflows/1040?version=1, https://dev.workflowhub.eu/workflows/1171?version=2, https://dev.workflowhub.eu/workflows/1172?version=2, https://dev.workflowhub.eu/workflows/1180?version=2, https://dev.workflowhub.eu/workflows/1188?version=2, https://dev.workflowhub.eu/workflows/1191?version=1, https://dev.workflowhub.eu/workflows/1199?version=2, https://dev.workflowhub.eu/workflows/1204?version=2, https://dev.workflowhub.eu/workflows/1213?version=2, https://dev.workflowhub.eu/workflows/1215?version=2, https://dev.workflowhub.eu/workflows/1224?version=2, https://usegalaxy.eu/published/workflow?id=41d096891bada138, https://usegalaxy.eu/published/workflow?id=68edbb8eec38ad00, https://usegalaxy.eu/published/workflow?id=7463b26aab6a965d, https://usegalaxy.eu/published/workflow?id=86d50bbaaa3936dc, https://usegalaxy.eu/published/workflow?id=afb138fc03ca61a8, https://usegalaxy.eu/published/workflow?id=d55df785d4c71876, https://usegalaxy.eu/published/workflow?id=da10c475c83c5469, https://usegalaxy.eu/published/workflow?id=e9e41c23261d4ac5, https://usegalaxy.eu/published/workflow?id=eaf4d8f8fb3e683d, https://usegalaxy.org.au/published/workflow?id=03efeb2948494130, https://usegalaxy.org.au/published/workflow?id=236e0f306916149b, https://usegalaxy.org.au/published/workflow?id=33922db405a97cbb, https://usegalaxy.org.au/published/workflow?id=59c9a6efaf57ce35, https://usegalaxy.org.au/published/workflow?id=65a659982f955743, https://usegalaxy.org.au/published/workflow?id=7cddb345877f08bf, https://usegalaxy.org.au/published/workflow?id=88fa3e250db2d70e, https://usegalaxy.org.au/published/workflow?id=c2f449e69d06ccf5, https://usegalaxy.org.au/published/workflow?id=da79aa2dfd6b34bc, https://usegalaxy.org/published/workflow?id=0775ff66d1bc04b5, https://usegalaxy.org/published/workflow?id=9865fee6c68fc201, https://usegalaxy.org/published/workflow?id=f9048d9678e21f36, https://workflowhub.eu/workflows/1394?version=1, https://workflowhub.eu/workflows/1399?version=1, https://workflowhub.eu/workflows/1421?version=1, https://workflowhub.eu/workflows/1424?version=1, https://workflowhub.eu/workflows/1434?version=1, https://workflowhub.eu/workflows/1438?version=1, https://workflowhub.eu/workflows/1446?version=1, https://workflowhub.eu/workflows/1449?version=1, https://workflowhub.eu/workflows/1452?version=1, https://workflowhub.eu/workflows/1463?version=1, https://workflowhub.eu/workflows/613?version=2 |
proteomics/DIA_Analysis_OSW, proteomics/DIA_lib_OSW, proteomics/database-handling, proteomics/ntails, proteomics/protein-id-oms, proteomics/protein-id-sg-ps, proteomics/protein-quant-sil |
|
pandas_rolling_window |
pandas_rolling_window |
Rolling window calculations |
2019-05-20 |
https://pandas.pydata.org/pandas-docs/stable/reference/api/pandas.DataFrame.rolling.html |
0.1 |
numpy |
|
To update |
Statistics |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/pandas_rolling_window |
https://github.com/bgruening/galaxytools/tree/master/tools/pandas_rolling_window |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
13 |
13 |
218 |
282 |
25 |
25 |
68 |
68 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
350 |
286 |
38 |
38 |
|
|
|
paralyzer |
paralyzer |
A method to generate a high resolution map of interaction sites between RNA-binding proteins and their targets. |
2016-12-02 |
https://ohlerlab.mdc-berlin.de/software/PARalyzer_85/ |
1.5 |
paralyzer |
1.5 |
Up-to-date |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
24 |
29 |
311 |
356 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
356 |
311 |
29 |
24 |
https://usegalaxy.eu/published/workflow?id=a108b575b16e6cb9 |
|
|
partialr_square |
partialRsq |
Compute partial R square |
2014-04-01 |
|
1.0.0 |
R |
|
To update |
Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/partialr_square |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/partialr_square |
|
|
|
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8 |
42 |
36 |
142 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
142 |
36 |
42 |
8 |
|
|
|
peakachu |
peakachu |
PEAKachu is a peak-caller for CLIP- and RIP-Seq data |
2018-01-30 |
|
0.2.0+galaxy1 |
peakachu |
0.2.0 |
To update |
Sequence Analysis, RNA |
|
|
|
|
rnateam |
https://github.com/tbischler/PEAKachu |
https://github.com/bgruening/galaxytools/tree/master/tools/peakachu |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
178 |
204 |
2713 |
3490 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3490 |
2713 |
204 |
178 |
https://dev.workflowhub.eu/workflows/1285?version=2, https://usegalaxy.eu/published/workflow?id=0c619b25c1394a09, https://usegalaxy.eu/published/workflow?id=153ba1581743d31f, https://usegalaxy.eu/published/workflow?id=f5be5bcf9b9f171c, https://workflowhub.eu/workflows/1706?version=1 |
transcriptomics/clipseq |
|
pearson_correlation |
Pearson_and_apos_Correlation1 |
Pearson and apos Correlation between any two numeric columns |
2014-07-28 |
|
1.0.0 |
|
|
To update |
Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/pearson_correlation |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/pearson_correlation |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
2 |
0 |
0 |
0 |
0 |
2 |
0 |
2 |
0 |
|
|
|
pfamscan |
pfamscan |
Search a FASTA sequence against a library of Pfam HMM. |
2023-02-02 |
http://ftp.ebi.ac.uk/pub/databases/Pfam/Tools/ |
1.6 |
pfam_scan |
1.6 |
Up-to-date |
Sequence Analysis |
Protein sequence analysis |
Protein sequence analysis |
Sequence analysis |
Sequence analysis |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/pfamscan |
https://github.com/bgruening/galaxytools/tree/master/tools/pfamscan |
pfamscan |
PfamScan |
This tool is used to search a FASTA sequence against a library of Pfam HMM. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
85 |
85 |
970 |
970 |
115 |
115 |
738 |
738 |
22 |
22 |
339 |
339 |
0 |
0 |
0 |
0 |
2047 |
2047 |
222 |
222 |
https://dev.workflowhub.eu/workflows/1324?version=3, https://usegalaxy.eu/published/workflow?id=11eba1b28ec87963, https://usegalaxy.eu/published/workflow?id=1f9a9a7998ef5ab3, https://usegalaxy.eu/published/workflow?id=47a0407867a90f95, https://usegalaxy.eu/published/workflow?id=87231a6a7938cb95, https://usegalaxy.eu/published/workflow?id=9b025479fade745d, https://usegalaxy.eu/published/workflow?id=b7a3cbcd32734e8b, https://usegalaxy.org.au/published/workflow?id=6e1e24f9e0326930, https://workflowhub.eu/workflows/1688?version=1 |
transcriptomics/differential-isoform-expression |
|
pgsnp2gd_snp |
pgSnp2gd_snp |
Convert from pgSnp to gd_snp |
2014-07-28 |
|
1.0.0 |
|
|
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/pgsnp2gd_snp |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/pgsnp2gd_snp |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
pgtools |
pg_dump, pg_import, pg_query |
tool suite for dealing with Postgresql databases from Galaxy's history |
2017-09-28 |
https://www.postgresql.org |
|
postgresql |
|
To update |
Data Export, Data Source |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tools/pgtools |
https://github.com/bgruening/galaxytools/tree/master/tools/pg_tools |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
pharmcat |
pharmcat |
Pharmacogenomics Clinical Annotation Tool |
2022-01-28 |
https://pharmcat.org/ |
|
|
|
To update |
Variant Analysis |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat |
https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
31 |
31 |
143 |
143 |
97 |
97 |
289 |
289 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
432 |
432 |
128 |
128 |
|
|
|
pileometh |
pileometh |
A tool for processing bisulfite sequencing alignments |
2017-02-14 |
https://github.com/dpryan79/MethylDackel |
0.5.2 |
methyldackel |
0.6.1 |
To update |
Sequence Analysis |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/methyldackel |
https://github.com/bgruening/galaxytools/tree/master/tools/methyldackel |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
641 |
974 |
15143 |
20612 |
334 |
334 |
5068 |
5068 |
96 |
96 |
2898 |
2898 |
0 |
0 |
0 |
0 |
28578 |
23109 |
1404 |
1071 |
https://dev.workflowhub.eu/workflows/1157?version=2, https://usegalaxy.eu/published/workflow?id=489926f9299594fe, https://usegalaxy.eu/published/workflow?id=bffeb3cd0c708441, https://usegalaxy.eu/published/workflow?id=c46345ba876d5bfe, https://usegalaxy.org.au/published/workflow?id=91c8daa5f2bcf7c0, https://usegalaxy.org/published/workflow?id=e20e1371e50bdcee, https://usegalaxy.org/published/workflow?id=eb4f7dbca0114270, https://workflowhub.eu/workflows/1566?version=1 |
epigenetics/methylation-seq |
|
pileup_interval |
pileup_interval |
Pileup-to-Interval condenses pileup format into ranges of bases |
2015-03-06 |
|
1.0.3 |
bx-python |
0.14.0 |
To update |
SAM |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/pileup_interval |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/pileup_interval |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
52 |
60 |
517 |
648 |
192 |
1568 |
1328 |
7870 |
21 |
30 |
767 |
875 |
0 |
0 |
0 |
0 |
9393 |
2612 |
1658 |
265 |
https://usegalaxy.org/published/workflow?id=0b3af7e9ac69a6b7 |
|
|
pileup_parser |
pileup_parser |
Filter pileup on coverage and SNPs |
2013-08-26 |
https://github.com/galaxyproject/tools-devteam/ |
1.0.2 |
perl |
|
To update |
SAM |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/pileup_parser |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/pileup_parser |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
443 |
507 |
3650 |
3887 |
1233 |
4610 |
8686 |
52792 |
176 |
322 |
1909 |
2652 |
4 |
4 |
196 |
196 |
59527 |
14441 |
5443 |
1856 |
https://usegalaxy.eu/published/workflow?id=36a4646959829018, https://usegalaxy.eu/published/workflow?id=99022559adf01c4a, https://usegalaxy.org.au/published/workflow?id=83c20d8e5fd97313, https://usegalaxy.org/published/workflow?id=0b3af7e9ac69a6b7, https://usegalaxy.org/published/workflow?id=11dac9cba49be089, https://usegalaxy.org/published/workflow?id=26d2c2d51d6a7158, https://usegalaxy.org/published/workflow?id=31dea5361ec9421c, https://usegalaxy.org/published/workflow?id=34ed5c1ceeed43c1, https://usegalaxy.org/published/workflow?id=4339d5625c15ae78, https://usegalaxy.org/published/workflow?id=558c28293ec2d239, https://usegalaxy.org/published/workflow?id=578f46106f72c971, https://usegalaxy.org/published/workflow?id=6c68099053763993, https://usegalaxy.org/published/workflow?id=7c3faadda8f89749, https://usegalaxy.org/published/workflow?id=80fa8f0fe6330b88, https://usegalaxy.org/published/workflow?id=c7aca0f5bb660907, https://usegalaxy.org/published/workflow?id=e8b1d1e5e889c986 |
|
|
pipmir |
pipmir |
A method to identify novel plant miRNA. |
2016-11-25 |
https://ohlerlab.mdc-berlin.de/software/Pipeline_for_the_Identification_of_Plant_miRNAs_84/ |
0.1.0 |
pipmir |
1.1 |
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/pipmir |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/pipmir |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
44 |
49 |
251 |
312 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
312 |
251 |
49 |
44 |
|
|
|
piranha |
piranha |
Piranha is a peak-caller for CLIP- and RIP-Seq data |
2015-07-02 |
|
1.2.1.0 |
piranha |
1.2.1 |
To update |
Sequence Analysis, RNA |
|
|
|
|
rnateam |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/piranha |
https://github.com/bgruening/galaxytools/tree/master/tools/piranha |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
94 |
122 |
1265 |
2094 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2094 |
1265 |
122 |
94 |
https://usegalaxy.eu/published/workflow?id=6514e610c79df72c, https://usegalaxy.eu/published/workflow?id=b619339f4e1c6fdf |
|
|
platypus |
bg_platypus |
efficient and accurate variant-detection in high-throughput sequencing data |
2015-02-28 |
http://www.well.ox.ac.uk/platypus |
0.0.11 |
platypus |
|
To update |
Sequence Analysis |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/platypus |
https://github.com/bgruening/galaxytools/tree/master/tools/platypus |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
plot_from_lda |
plot_for_lda_output1 |
Draw ROC plot on "Perform LDA" output |
2014-07-28 |
|
1.0.1 |
R |
|
To update |
Graphics, Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/plot_from_lda |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/plot_from_lda |
|
|
|
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
18 |
25 |
53 |
77 |
37 |
348 |
102 |
903 |
7 |
10 |
125 |
155 |
3 |
3 |
3 |
3 |
1138 |
283 |
386 |
65 |
|
|
|
plotly_ml_performance_plots |
plotly_ml_performance_plots |
performance plots for machine learning problems |
2018-10-11 |
http://scikit-learn.org/stable/modules/classes.html#module-sklearn.metrics |
0.4 |
galaxy-ml |
0.10.0 |
To update |
Visualization |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/plotly_ml_performance_plots |
https://github.com/bgruening/galaxytools/tree/master/tools/plotly_ml_performance_plots |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
212 |
232 |
1343 |
1581 |
181 |
184 |
1257 |
1315 |
27 |
27 |
765 |
765 |
0 |
0 |
0 |
0 |
3661 |
3365 |
443 |
420 |
https://dev.workflowhub.eu/workflows/1294?version=1, https://dev.workflowhub.eu/workflows/1331?version=3, https://usegalaxy.eu/published/workflow?id=1d55d5d20c581b16, https://usegalaxy.eu/published/workflow?id=77fa6e5a8fa3f911, https://usegalaxy.eu/published/workflow?id=fdbf1a1a584a429c, https://usegalaxy.org.au/published/workflow?id=517f947adc81a16a, https://usegalaxy.org.au/published/workflow?id=bfd7ed2abc95b53d, https://usegalaxy.org/published/workflow?id=0cf9868ebc9ec1dc, https://usegalaxy.org/published/workflow?id=728ce1ce56c4d3da, https://workflowhub.eu/workflows/1588?version=1, https://workflowhub.eu/workflows/1592?version=1 |
statistics/classification_machinelearning, statistics/classification_regression |
|
plotly_parallel_coordinates_plot |
plotly_parallel_coordinates_plot |
parallel coordinates plot produced with plotly |
2018-09-23 |
https://plot.ly/python/parallel-coordinates-plot/ |
0.2 |
python |
|
To update |
Visualization |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot |
https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
85 |
123 |
198 |
667 |
114 |
124 |
627 |
665 |
28 |
28 |
670 |
670 |
0 |
0 |
0 |
0 |
2002 |
1495 |
275 |
227 |
https://dev.workflowhub.eu/workflows/1280?version=2, https://usegalaxy.eu/published/workflow?id=83fe480cdbb70099, https://usegalaxy.eu/published/workflow?id=c15303fcc0b53df6, https://usegalaxy.org.au/published/workflow?id=92b5a29a956a3afc, https://workflowhub.eu/workflows/1722?version=1 |
statistics/age-prediction-with-ml |
|
plotly_regression_performance_plots |
plotly_regression_performance_plots |
performance plots for regression problems |
2018-10-30 |
http://scikit-learn.org/stable/supervised_learning.html#supervised-learning |
0.1 |
python |
|
To update |
Visualization |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/plotly_regression_performance_plots |
https://github.com/bgruening/galaxytools/tree/master/tools/plotly_regression_performance_plots |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
244 |
272 |
774 |
952 |
121 |
123 |
494 |
508 |
29 |
29 |
238 |
238 |
0 |
0 |
0 |
0 |
1698 |
1506 |
424 |
394 |
https://dev.workflowhub.eu/workflows/1277?version=2, https://dev.workflowhub.eu/workflows/1288?version=1, https://dev.workflowhub.eu/workflows/1308?version=1, https://dev.workflowhub.eu/workflows/1328?version=1, https://usegalaxy.eu/published/workflow?id=138d4893a1d6228e, https://usegalaxy.eu/published/workflow?id=4b383d13ff512687, https://usegalaxy.eu/published/workflow?id=a669986e1a5cee31, https://usegalaxy.eu/published/workflow?id=a824fb7e65a1a939, https://usegalaxy.org.au/published/workflow?id=350433eefb835f19, https://usegalaxy.org.au/published/workflow?id=65a8ac91d6ded9a2, https://usegalaxy.org.au/published/workflow?id=697945d5f9edbf39, https://usegalaxy.org.au/published/workflow?id=cebab4f1a2405a89, https://workflowhub.eu/workflows/1583?version=1, https://workflowhub.eu/workflows/1596?version=1, https://workflowhub.eu/workflows/1633?version=1, https://workflowhub.eu/workflows/1721?version=1 |
statistics/FNN, statistics/age-prediction-with-ml, statistics/classification_regression, statistics/regression_machinelearning |
|
poisson2test |
poisson2test |
Poisson two-sample test |
2014-01-27 |
https://bitbucket.org/natefoo/taxonomy |
1.0.0 |
taxonomy |
0.10.1 |
To update |
Statistics, Metagenomics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/taxonomy/poisson2test |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/taxonomy/poisson2test |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
15 |
17 |
90 |
121 |
1 |
140 |
4 |
562 |
6 |
8 |
330 |
389 |
0 |
0 |
0 |
0 |
1072 |
424 |
165 |
22 |
|
|
|
predictnls |
predictnls |
Python reimplementation of predictNLS for Galaxy |
2013-09-23 |
https://github.com/peterjc/pico_galaxy/tree/master/tools/predictnls |
0.0.10 |
|
|
To update |
Sequence Analysis |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/predictnls |
https://github.com/peterjc/pico_galaxy/tree/master/tools/predictnls |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
principal_component_analysis |
pca1 |
Principal Component Analysis |
2014-05-19 |
|
1.0.2 |
rpy |
|
To update |
Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/principal_component_analysis |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/principal_component_analysis |
|
|
|
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
205 |
254 |
9751 |
10062 |
573 |
1514 |
2844 |
8173 |
0 |
0 |
0 |
0 |
15 |
15 |
43 |
43 |
18278 |
12638 |
1783 |
793 |
https://usegalaxy.org/published/workflow?id=13a550ed56b56502, https://usegalaxy.org/published/workflow?id=7ca9c5203520ca7e, https://usegalaxy.org/published/workflow?id=e10859cc568da07c |
|
|
protease_prediction |
eden_protease_prediction |
This tool can learn the cleavage specificity of a given class of proteases. |
2016-03-13 |
https://github.com/fabriziocosta/eden |
0.9 |
eden |
2.0 |
To update |
Sequence Analysis, Proteomics |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/protease_prediction |
https://github.com/bgruening/galaxytools/tree/master/tools/protease_prediction |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
17 |
23 |
105 |
160 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
160 |
105 |
23 |
17 |
|
|
|
protein_properties |
bg_protein_properties |
Calculation of various properties from given protein sequences |
2015-06-07 |
|
0.2.0 |
biopython |
1.70 |
To update |
Sequence Analysis |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/protein_properties |
https://github.com/bgruening/galaxytools/tree/master/tools/protein_properties |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
92 |
112 |
499 |
684 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
684 |
499 |
112 |
92 |
|
|
|
proteomics_improviser |
proteomics_improviser |
Visualisation of PepXML files |
2015-02-28 |
http://www.improviser.uni-freiburg.de/ |
1.1.0.1 |
|
|
To update |
Proteomics |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/proteomics/improviser |
https://github.com/bgruening/galaxytools/tree/master/tools/proteomics/improviser |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
pubchem_rest_tool |
pubchem_rest_tool |
This tool fetches data from pubchem via the PubChem REST API. |
2015-02-28 |
https://pubchem.ncbi.nlm.nih.gov/pug_rest/PUG_REST.html |
0.1.0 |
|
|
To update |
Data Source |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/rest_tool |
https://github.com/bgruening/galaxytools/tree/master/tools/rest_tool |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
qiime2_dbotu_q2 |
qiime2_dbotu_q2 |
q2-dbotu is a Qiime 2 plugin for performing OTU clustering |
2025-03-20 |
https://github.com/cduvallet/q2-dbotu/tree/master |
2022.11.1+galaxy0 |
|
|
To update |
Metagenomics |
Demultiplexing, Visualisation, Taxonomic classification |
Demultiplexing, Visualisation, Taxonomic classification |
Microbial ecology, Metatranscriptomics, Metagenomics |
Microbial ecology, Metatranscriptomics, Metagenomics |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/qiime2_dbotu_q2/ |
https://github.com/bgruening/galaxytools/tree/master/tools/qiime2_dbotu_q2 |
qiime2 |
QIIME 2 |
QIIME 2 is an AI-ready microbiome multi-omics data science platform that is trusted, free, open source, extensible, and community developed and supported bioinformatics. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
quality_filter |
qualityFilter |
Filter nucleotides based on quality scores |
2014-04-01 |
|
1.0.1 |
bx-python |
0.14.0 |
To update |
Sequence Analysis, Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/quality_filter |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/quality_filter |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
35 |
62 |
78 |
724 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
724 |
78 |
62 |
35 |
|
|
|
racon |
racon |
Consensus module for raw de novo DNA assembly of long uncorrected reads. |
2018-06-11 |
https://github.com/isovic/racon |
1.5.0 |
racon |
1.5.0 |
Up-to-date |
Sequence Analysis |
Genome assembly, Mapping assembly |
Genome assembly, Mapping assembly |
Whole genome sequencing, Sequence assembly |
Whole genome sequencing, Sequence assembly |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/racon |
https://github.com/bgruening/galaxytools/tree/master/tools/racon |
Racon |
Racon |
Consensus module for raw de novo DNA assembly of long uncorrected readsRacon is intended as a standalone consensus module to correct raw contigs generated by rapid assembly methods which do not include a consensus step. The goal of Racon is to generate genomic consensus which is of similar or better quality compared to the output generated by assembly methods which employ both error correction and consensus steps, while providing a speedup of several times compared to those methods. It supports data produced by both Pacific Biosciences and Oxford Nanopore Technologies. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
942 |
975 |
29815 |
30641 |
572 |
572 |
16335 |
16335 |
193 |
193 |
6569 |
6569 |
27 |
27 |
239 |
239 |
53784 |
52958 |
1767 |
1734 |
https://dev.workflowhub.eu/workflows/1107?version=1, https://dev.workflowhub.eu/workflows/1148?version=2, https://dev.workflowhub.eu/workflows/1154?version=2, https://usegalaxy.eu/published/workflow?id=249c115413f17f28, https://usegalaxy.eu/published/workflow?id=32d2f5340098bcbd, https://usegalaxy.eu/published/workflow?id=39837ca09374598b, https://usegalaxy.eu/published/workflow?id=44e53ea319e07daa, https://usegalaxy.eu/published/workflow?id=5500de2961f7470c, https://usegalaxy.eu/published/workflow?id=5826e573b6f93762, https://usegalaxy.eu/published/workflow?id=8b2f53745e720d0f, https://usegalaxy.eu/published/workflow?id=a337bfb2eb1e583f, https://usegalaxy.eu/published/workflow?id=a4f50449afde4a05, https://usegalaxy.eu/published/workflow?id=a84bac86ec183d46, https://usegalaxy.eu/published/workflow?id=b4de76c0a4d0e23a, https://usegalaxy.eu/published/workflow?id=c48807045e258dd8, https://usegalaxy.eu/published/workflow?id=dc7107896a3f2964, https://usegalaxy.org.au/published/workflow?id=0c421197e022f323, https://usegalaxy.org.au/published/workflow?id=1ff6aabb7e3954ac, https://usegalaxy.org.au/published/workflow?id=45e9910f46a210d8, https://usegalaxy.org.au/published/workflow?id=d9571b3dfef34e5e, https://usegalaxy.org/published/workflow?id=bcdc5ce2ea8700fc, https://workflowhub.eu/workflows/1477?version=1, https://workflowhub.eu/workflows/1599?version=1, https://workflowhub.eu/workflows/1604?version=1, https://workflowhub.eu/workflows/227?version=1, https://workflowhub.eu/workflows/228?version=1, https://workflowhub.eu/workflows/406?version=1, https://workflowhub.eu/workflows/51?version=1, https://workflowhub.eu/workflows/563?version=1 |
assembly/largegenome, microbiome/plasmid-metagenomics-nanopore |
|
rbpbench |
rbpbench |
Evaluate CLIP-seq and other genomic region data using a comprehensive collection of RBP binding motifs |
2023-12-03 |
https://github.com/michauhl/RBPBench |
0.8.1 |
rbpbench |
1.0.6 |
To update |
Sequence Analysis, RNA, CLIP-seq |
|
|
RNA, Protein interactions, RNA immunoprecipitation, Bioinformatics, Sequence analysis |
RNA, Protein interactions, RNA immunoprecipitation, Bioinformatics, Sequence analysis |
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rbpbench |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rbpbench |
rbpbench |
RBPBench |
Evaluate CLIP-seq and other genomic region data using a comprehensive collection of RBP binding motifs |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8 |
8 |
109 |
109 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
109 |
109 |
8 |
8 |
|
|
|
rcas |
rcas |
RCAS (RNA Centric Annotation System) for functional analysis of transcriptome-wide regions detected by high-throughput experiments |
2017-04-13 |
https://github.com/BIMSBbioinfo/RCAS |
1.5.4 |
bioconductor-rcas |
1.32.0 |
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
88 |
102 |
800 |
1271 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1271 |
800 |
102 |
88 |
https://dev.workflowhub.eu/workflows/1285?version=2, https://usegalaxy.eu/published/workflow?id=0c619b25c1394a09, https://usegalaxy.eu/published/workflow?id=153ba1581743d31f, https://usegalaxy.eu/published/workflow?id=24ddd188da35b061, https://usegalaxy.eu/published/workflow?id=6514e610c79df72c, https://usegalaxy.eu/published/workflow?id=8fb156020285e049, https://usegalaxy.eu/published/workflow?id=b619339f4e1c6fdf, https://usegalaxy.eu/published/workflow?id=f5be5bcf9b9f171c, https://workflowhub.eu/workflows/1706?version=1 |
transcriptomics/clipseq |
|
rcve |
rcve1 |
Compute RCVE |
2014-04-01 |
|
1.0.0 |
R |
|
To update |
Sequence Analysis, Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/rcve |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/rcve |
|
|
|
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
46 |
32 |
193 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
193 |
32 |
46 |
6 |
|
|
|
reago |
reago |
Reago is tool to assembly 16S ribosomal RNA recovery from metagenomic data. |
2015-12-09 |
https://github.com/chengyuan/reago-1.1 |
1.1 |
reago |
1.1 |
Up-to-date |
Metagenomics, RNA |
Sequence assembly |
Sequence assembly |
Sequence assembly, RNA, Metagenomics, Microbiology |
Sequence assembly, RNA, Metagenomics, Microbiology |
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/reago |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/reago |
reago |
REAGO |
This is an assembly tool for 16S ribosomal RNA recovery from metagenomic data. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
|
|
|
remove_beginning |
Remove beginning1 |
Remove lines from the beginning of a file. |
2012-12-04 |
|
1.0.0 |
|
|
To update |
Text Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/remove_beginning |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/remove_beginning |
|
|
|
|
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
1 |
1 |
0 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
3916 |
4163 |
195233 |
218293 |
4306 |
8745 |
40935 |
119915 |
1492 |
1650 |
12870 |
13927 |
213 |
213 |
1051 |
1119 |
353254 |
250089 |
14771 |
9927 |
https://dev.workflowhub.eu/workflows/1064?version=1, https://dev.workflowhub.eu/workflows/1077?version=2, https://dev.workflowhub.eu/workflows/1083?version=1, https://dev.workflowhub.eu/workflows/1085?version=2, https://dev.workflowhub.eu/workflows/1090?version=2, https://dev.workflowhub.eu/workflows/1098?version=1, https://dev.workflowhub.eu/workflows/1145?version=1, https://dev.workflowhub.eu/workflows/1165?version=2, https://dev.workflowhub.eu/workflows/1177?version=2, https://dev.workflowhub.eu/workflows/1206?version=1, https://dev.workflowhub.eu/workflows/1229?version=1, https://dev.workflowhub.eu/workflows/1248?version=2, https://dev.workflowhub.eu/workflows/1297?version=1, https://dev.workflowhub.eu/workflows/1301?version=2, https://dev.workflowhub.eu/workflows/1324?version=3, https://dev.workflowhub.eu/workflows/1328?version=1, https://dev.workflowhub.eu/workflows/1331?version=3, https://dev.workflowhub.eu/workflows/1338?version=1, https://dev.workflowhub.eu/workflows/1351?version=1, https://dev.workflowhub.eu/workflows/1354?version=1, https://dev.workflowhub.eu/workflows/1369?version=1, https://dev.workflowhub.eu/workflows/1372?version=1, https://dev.workflowhub.eu/workflows/1391?version=1, https://dev.workflowhub.eu/workflows/1392?version=1, https://usegalaxy.cz/published/workflow?id=a5241f01bb65bd38, https://usegalaxy.eu/published/workflow?id=03e8b0d3dcedc092, https://usegalaxy.eu/published/workflow?id=08eb5e55109c4d9c, https://usegalaxy.eu/published/workflow?id=09c7069ae409c362, https://usegalaxy.eu/published/workflow?id=11eba1b28ec87963, https://usegalaxy.eu/published/workflow?id=138d4893a1d6228e, https://usegalaxy.eu/published/workflow?id=1b72af1870c540d6, https://usegalaxy.eu/published/workflow?id=1d55d5d20c581b16, https://usegalaxy.eu/published/workflow?id=1f9a9a7998ef5ab3, https://usegalaxy.eu/published/workflow?id=204854b8ec94da85, https://usegalaxy.eu/published/workflow?id=20ada53472782c9b, https://usegalaxy.eu/published/workflow?id=21aba070546c3c51, https://usegalaxy.eu/published/workflow?id=21fc597d983f1194, https://usegalaxy.eu/published/workflow?id=229a955d29bd4064, https://usegalaxy.eu/published/workflow?id=22c4a7a4d41a3f06, https://usegalaxy.eu/published/workflow?id=321ea55011f1248f, https://usegalaxy.eu/published/workflow?id=376119528377a3ae, https://usegalaxy.eu/published/workflow?id=3e01a2c6d954ae6e, https://usegalaxy.eu/published/workflow?id=41df8c7821b5f2fc, https://usegalaxy.eu/published/workflow?id=466bdd8ba7b67264, https://usegalaxy.eu/published/workflow?id=47a0407867a90f95, https://usegalaxy.eu/published/workflow?id=4c0000eb4995a310, https://usegalaxy.eu/published/workflow?id=4f245ac304ab76d9, https://usegalaxy.eu/published/workflow?id=4f9f050e34747d51, https://usegalaxy.eu/published/workflow?id=516b4d4146e4af66, https://usegalaxy.eu/published/workflow?id=5374daf356516a40, https://usegalaxy.eu/published/workflow?id=5e4774036aa20b80, https://usegalaxy.eu/published/workflow?id=5fb6cb6c80a5c62f, https://usegalaxy.eu/published/workflow?id=607ca3a9d45bd080, https://usegalaxy.eu/published/workflow?id=60e0b2a28a900178, https://usegalaxy.eu/published/workflow?id=612dc5bdf388585f, https://usegalaxy.eu/published/workflow?id=6306656ec10bd18f, https://usegalaxy.eu/published/workflow?id=64abcddeb516a712, https://usegalaxy.eu/published/workflow?id=64bb7a64877034dc, https://usegalaxy.eu/published/workflow?id=68e8042f11d5a3fd, https://usegalaxy.eu/published/workflow?id=6aa2891bd2b41f32, https://usegalaxy.eu/published/workflow?id=6cb85fe1ad0c9f3b, https://usegalaxy.eu/published/workflow?id=6f4bbed7a320dc2f, https://usegalaxy.eu/published/workflow?id=7136ce9f18c74853, https://usegalaxy.eu/published/workflow?id=71816adecac46e74, https://usegalaxy.eu/published/workflow?id=739214a6dfa194e1, https://usegalaxy.eu/published/workflow?id=73dc2384535bf6af, https://usegalaxy.eu/published/workflow?id=76d3408d0d22ad05, https://usegalaxy.eu/published/workflow?id=7705b1e25110baf4, https://usegalaxy.eu/published/workflow?id=77fa6e5a8fa3f911, https://usegalaxy.eu/published/workflow?id=7caa58e36df6ad03, https://usegalaxy.eu/published/workflow?id=7d44ea091d437edf, https://usegalaxy.eu/published/workflow?id=8172bf190ce30036, https://usegalaxy.eu/published/workflow?id=82b6871682f1659a, https://usegalaxy.eu/published/workflow?id=82ef590b5821805d, https://usegalaxy.eu/published/workflow?id=836cc09d17eaecb0, https://usegalaxy.eu/published/workflow?id=8a85663218676b59, https://usegalaxy.eu/published/workflow?id=8af41219411062ad, https://usegalaxy.eu/published/workflow?id=8bb3bc745ea62bed, https://usegalaxy.eu/published/workflow?id=8e997deae5a382c4, https://usegalaxy.eu/published/workflow?id=8ef3379dded2490a, https://usegalaxy.eu/published/workflow?id=8f677efac7100097, https://usegalaxy.eu/published/workflow?id=912b81c444e35045, https://usegalaxy.eu/published/workflow?id=9155ed0e7a6a7b60, https://usegalaxy.eu/published/workflow?id=9791e8aae12d6e63, https://usegalaxy.eu/published/workflow?id=9a0275211e74698a, https://usegalaxy.eu/published/workflow?id=9ac51f1eeaff5e9c, https://usegalaxy.eu/published/workflow?id=9b025479fade745d, https://usegalaxy.eu/published/workflow?id=9b4e6c5f2c1babce, https://usegalaxy.eu/published/workflow?id=9bafb4701a4c0426, https://usegalaxy.eu/published/workflow?id=9e0d784860d6cc91, https://usegalaxy.eu/published/workflow?id=9e497c5c9e64d9b3, https://usegalaxy.eu/published/workflow?id=9ef76d764d9961b2, https://usegalaxy.eu/published/workflow?id=a2284469005518e1, https://usegalaxy.eu/published/workflow?id=a6ade348ef143292, https://usegalaxy.eu/published/workflow?id=a824cfdee241177f, https://usegalaxy.eu/published/workflow?id=a824fb7e65a1a939, https://usegalaxy.eu/published/workflow?id=adf5e8bead686341, https://usegalaxy.eu/published/workflow?id=b06f5729d6d68794, https://usegalaxy.eu/published/workflow?id=b14845359b702444, https://usegalaxy.eu/published/workflow?id=b351b297ac7d923f, https://usegalaxy.eu/published/workflow?id=b6bb29169160a713, https://usegalaxy.eu/published/workflow?id=b7a3cbcd32734e8b, https://usegalaxy.eu/published/workflow?id=ba3a5d59b3879764, https://usegalaxy.eu/published/workflow?id=c02ff9e97ce796c6, https://usegalaxy.eu/published/workflow?id=c4119ea7ffd29094, https://usegalaxy.eu/published/workflow?id=c8bc4af6dd3b5d02, https://usegalaxy.eu/published/workflow?id=cb2df493f5e334f7, https://usegalaxy.eu/published/workflow?id=cd675ab32d3e7833, https://usegalaxy.eu/published/workflow?id=cdf2f02428f5f83f, https://usegalaxy.eu/published/workflow?id=d0e062aee910086a, https://usegalaxy.eu/published/workflow?id=d1d5a6bd6571d47f, https://usegalaxy.eu/published/workflow?id=d215a2e554fd83bc, https://usegalaxy.eu/published/workflow?id=d87fc6685e47d27d, https://usegalaxy.eu/published/workflow?id=e573c6b697524e3a, https://usegalaxy.eu/published/workflow?id=f0bec337f9998289, https://usegalaxy.eu/published/workflow?id=f4a55ef0d4c2cd97, https://usegalaxy.eu/published/workflow?id=f6a763951d815944, https://usegalaxy.eu/published/workflow?id=f98560da584d5abf, https://usegalaxy.eu/published/workflow?id=fc42cc9467c6ee8d, https://usegalaxy.eu/published/workflow?id=fed55dc53c5325ff, https://usegalaxy.fr/published/workflow?id=7c0a90d4e53bca51, https://usegalaxy.fr/published/workflow?id=c7be6e229a045fad, https://usegalaxy.org.au/published/workflow?id=09f0170639c978e8, https://usegalaxy.org.au/published/workflow?id=0e11619979c2830c, https://usegalaxy.org.au/published/workflow?id=0f9a29e8eac2075c, https://usegalaxy.org.au/published/workflow?id=12d36e402f858c65, https://usegalaxy.org.au/published/workflow?id=16c6c253e009cc0d, https://usegalaxy.org.au/published/workflow?id=1727d16fa4dec19c, https://usegalaxy.org.au/published/workflow?id=1d1c2589f94fc4df, https://usegalaxy.org.au/published/workflow?id=20d472fc5563a640, https://usegalaxy.org.au/published/workflow?id=244ea5e94237ebad, https://usegalaxy.org.au/published/workflow?id=2f6e22de138a64eb, https://usegalaxy.org.au/published/workflow?id=2fc7d396ef610ed8, https://usegalaxy.org.au/published/workflow?id=4c7e0703aace6aa3, https://usegalaxy.org.au/published/workflow?id=4f837b7f90d5ebac, https://usegalaxy.org.au/published/workflow?id=517f947adc81a16a, https://usegalaxy.org.au/published/workflow?id=65a8ac91d6ded9a2, https://usegalaxy.org.au/published/workflow?id=6ab36c0d5b0d73e0, https://usegalaxy.org.au/published/workflow?id=6dfbff6d74c0601b, https://usegalaxy.org.au/published/workflow?id=6e1e24f9e0326930, https://usegalaxy.org.au/published/workflow?id=76a0a3af8de11622, https://usegalaxy.org.au/published/workflow?id=832a30759469d3fe, https://usegalaxy.org.au/published/workflow?id=857e482acfcb2dba, https://usegalaxy.org.au/published/workflow?id=8b5897305dcaf076, https://usegalaxy.org.au/published/workflow?id=9281258aefd17c0c, https://usegalaxy.org.au/published/workflow?id=92fcdd490831c6c5, https://usegalaxy.org.au/published/workflow?id=9f112e39bd3bd746, https://usegalaxy.org.au/published/workflow?id=a320948b3eb1a421, https://usegalaxy.org.au/published/workflow?id=b5e546197f47f3ec, https://usegalaxy.org.au/published/workflow?id=b60922a253df6654, https://usegalaxy.org.au/published/workflow?id=ba217a34d7e1b5ee, https://usegalaxy.org.au/published/workflow?id=d62b6717202f42c9, https://usegalaxy.org.au/published/workflow?id=ebf88e79c4f094ba, https://usegalaxy.org.au/published/workflow?id=eda40b58616a0fe4, https://usegalaxy.org.au/published/workflow?id=edc20b5e70297a7d, https://usegalaxy.org/published/workflow?id=005924662f68a480, https://usegalaxy.org/published/workflow?id=042758b8a8c5ac80, https://usegalaxy.org/published/workflow?id=0596162a499b4074, https://usegalaxy.org/published/workflow?id=0cf9868ebc9ec1dc, https://usegalaxy.org/published/workflow?id=29ba77708cdafe0f, https://usegalaxy.org/published/workflow?id=2d3063882d8239ff, https://usegalaxy.org/published/workflow?id=2d50de9b95ad0808, https://usegalaxy.org/published/workflow?id=2de32c02c22b6d98, https://usegalaxy.org/published/workflow?id=347571ba3b281bf4, https://usegalaxy.org/published/workflow?id=371273ba52f1f5dc, https://usegalaxy.org/published/workflow?id=38911ba6f66d80f6, https://usegalaxy.org/published/workflow?id=3e703abaeb870f6f, https://usegalaxy.org/published/workflow?id=3ef08553982f6ffc, https://usegalaxy.org/published/workflow?id=42331381df05b956, https://usegalaxy.org/published/workflow?id=4445c84aa4795a05, https://usegalaxy.org/published/workflow?id=470b41d0e43bb46b, https://usegalaxy.org/published/workflow?id=49f8b32c3206f76c, https://usegalaxy.org/published/workflow?id=531d02f7213f9113, https://usegalaxy.org/published/workflow?id=67080f040e855990, https://usegalaxy.org/published/workflow?id=68832752b883c226, https://usegalaxy.org/published/workflow?id=6d778eeb176d563c, https://usegalaxy.org/published/workflow?id=6f836f4b71d399e7, https://usegalaxy.org/published/workflow?id=71621a8a85b93435, https://usegalaxy.org/published/workflow?id=728ce1ce56c4d3da, https://usegalaxy.org/published/workflow?id=734e08331f8f34b7, https://usegalaxy.org/published/workflow?id=79a282b2bf89c6ac, https://usegalaxy.org/published/workflow?id=7ca9c5203520ca7e, https://usegalaxy.org/published/workflow?id=7da0b02000e3b9e8, https://usegalaxy.org/published/workflow?id=88f8feaad0f615de, https://usegalaxy.org/published/workflow?id=941ced9f12eecd3c, https://usegalaxy.org/published/workflow?id=9864961cc6132562, https://usegalaxy.org/published/workflow?id=987d5caea37794c8, https://usegalaxy.org/published/workflow?id=9aa6320de30e2675, https://usegalaxy.org/published/workflow?id=a253589432a44e5a, https://usegalaxy.org/published/workflow?id=a46ad0b9240d1a13, https://usegalaxy.org/published/workflow?id=be54e57345ce7ca5, https://usegalaxy.org/published/workflow?id=cb03300161109123, https://usegalaxy.org/published/workflow?id=cb810cdaa4915f4b, https://usegalaxy.org/published/workflow?id=ce4d4397eb8a5298, https://usegalaxy.org/published/workflow?id=d0847ce8261eb922, https://usegalaxy.org/published/workflow?id=e10859cc568da07c, https://usegalaxy.org/published/workflow?id=e1cc0886cd27b92e, https://usegalaxy.org/published/workflow?id=e3e646407e3f921d, https://usegalaxy.org/published/workflow?id=e97da2da9e0290a7, https://usegalaxy.org/published/workflow?id=ea97d3a23e6d38e6, https://usegalaxy.org/published/workflow?id=fbf75fbb72b488bd, https://workflowhub.eu/workflows/1060?version=1, https://workflowhub.eu/workflows/1063?version=5, https://workflowhub.eu/workflows/1218?version=1, https://workflowhub.eu/workflows/1225?version=1, https://workflowhub.eu/workflows/1396?version=1, https://workflowhub.eu/workflows/1402?version=1, https://workflowhub.eu/workflows/1405?version=1, https://workflowhub.eu/workflows/1410?version=1, https://workflowhub.eu/workflows/1413?version=1, https://workflowhub.eu/workflows/1425?version=1, https://workflowhub.eu/workflows/1435?version=1, https://workflowhub.eu/workflows/1450?version=1, https://workflowhub.eu/workflows/1464?version=1, https://workflowhub.eu/workflows/1473?version=1, https://workflowhub.eu/workflows/1479?version=1, https://workflowhub.eu/workflows/1486?version=1, https://workflowhub.eu/workflows/1487?version=2, https://workflowhub.eu/workflows/1489?version=1, https://workflowhub.eu/workflows/1536?version=1, https://workflowhub.eu/workflows/1558?version=1, https://workflowhub.eu/workflows/1567?version=1, https://workflowhub.eu/workflows/1571?version=1, https://workflowhub.eu/workflows/1588?version=1, https://workflowhub.eu/workflows/1601?version=1, https://workflowhub.eu/workflows/1624?version=1, https://workflowhub.eu/workflows/1633?version=1, https://workflowhub.eu/workflows/1650?version=1, https://workflowhub.eu/workflows/1688?version=1, https://workflowhub.eu/workflows/1704?version=1, https://workflowhub.eu/workflows/1793?version=1, https://workflowhub.eu/workflows/659?version=1, https://workflowhub.eu/workflows/660?version=1, https://workflowhub.eu/workflows/876?version=1 |
data-science/data-manipulation-olympics, ecology/biodiversity-data-exploration, ecology/regionalGAM, epigenetics/ewas-suite, galaxy-interface/workflow-reports, genome-annotation/bacterial-comparative-genomics-dataset-construction, genome-annotation/secondary-metabolite-discovery, introduction/data-manipulation-olympics, introduction/galaxy-intro-101-everyone, introduction/galaxy-reproduce, microbiome/clinical-mp-2-discovery, microbiome/clinical-mp-3-verification, microbiome/nanopore-16S-metagenomics, microbiome/pathogen-detection-from-nanopore-foodborne-data, proteomics/clinical-mp-2-discovery, proteomics/clinical-mp-3-verification, proteomics/metaquantome-data-creation, proteomics/neoantigen-fragpipe-discovery, proteomics/neoantigen-hla-binding-novel-peptides, sequence-analysis/tapscan-streptophyte-algae, single-cell/bulk-deconvolution-evaluate, statistics/classification_machinelearning, statistics/regression_machinelearning, transcriptomics/differential-isoform-expression, visualisation/circos |
|
remurna |
remurna |
remuRNA - Measurement of Single Nucleotide Polymorphism induced Changes of RNA Conformation |
2016-11-24 |
https://www.ncbi.nlm.nih.gov/CBBresearch/Przytycka/index.cgi#remurna |
1.0.0 |
remurna |
1.0 |
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/remurna |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/remurna |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
8 |
9 |
53 |
66 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
66 |
53 |
9 |
8 |
|
|
|
repeat_masker |
repeatmasker_wrapper |
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences. |
2015-02-28 |
http://www.repeatmasker.org/ |
0.1.2 |
RepeatMasker |
4.2.0 |
To update |
Sequence Analysis |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker |
https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1028 |
1029 |
7954 |
7965 |
993 |
993 |
9105 |
9105 |
352 |
352 |
3810 |
3810 |
85 |
85 |
518 |
518 |
21398 |
21387 |
2459 |
2458 |
https://dev.workflowhub.eu/workflows/1198?version=1, https://dev.workflowhub.eu/workflows/1264?version=2, https://usegalaxy.eu/published/workflow?id=09c534f738426a6d, https://usegalaxy.eu/published/workflow?id=1ce406de61de8492, https://usegalaxy.eu/published/workflow?id=2880a32a52d27743, https://usegalaxy.eu/published/workflow?id=2e93613c688ea52e, https://usegalaxy.eu/published/workflow?id=309969a261189b5f, https://usegalaxy.eu/published/workflow?id=327beb1edda305ff, https://usegalaxy.eu/published/workflow?id=38f12705279b5dfa, https://usegalaxy.eu/published/workflow?id=3cf3dd9727b7ac92, https://usegalaxy.eu/published/workflow?id=4077e77b6af919c4, https://usegalaxy.eu/published/workflow?id=5f29105e842716db, https://usegalaxy.eu/published/workflow?id=aada0111f835ce49, https://usegalaxy.eu/published/workflow?id=cc2bc81352d2e2cd, https://usegalaxy.eu/published/workflow?id=efb58bba65393347, https://usegalaxy.fr/published/workflow?id=ae05ff8487f58fd6, https://usegalaxy.org.au/published/workflow?id=a71349ba0bff403a, https://usegalaxy.org.au/published/workflow?id=a9068ea858222e2b, https://usegalaxy.org.au/published/workflow?id=ffb1117077f68a9f, https://usegalaxy.org/published/workflow?id=effc17e170263ae6, https://usegalaxy.org/published/workflow?id=f2f633d2b02b6050, https://usegalaxy.org/published/workflow?id=fb8b997f516288e1, https://workflowhub.eu/workflows/1538?version=1, https://workflowhub.eu/workflows/1656?version=1, https://workflowhub.eu/workflows/358?version=1, https://workflowhub.eu/workflows/575?version=1, https://workflowhub.eu/workflows/753?version=1, https://workflowhub.eu/workflows/875?version=3 |
ecology/phylogeny-data-prep, genome-annotation/repeatmasker |
|
replace_column_by_key_value_file |
replace_column_with_key_value_file |
A tool to replace all column entries of a file given by values of a key-value file. |
2017-02-24 |
|
0.2 |
|
|
To update |
Text Manipulation |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/replaceColumn/tools/replaceColumn |
https://github.com/bgruening/galaxytools/tree/master/tools/replaceColumn |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
475 |
527 |
577626 |
577795 |
277 |
399 |
42943 |
44495 |
113 |
113 |
2271 |
2271 |
11 |
11 |
2035 |
2035 |
626596 |
624875 |
1050 |
876 |
https://dev.workflowhub.eu/workflows/1157?version=2, https://dev.workflowhub.eu/workflows/1343?version=2, https://dev.workflowhub.eu/workflows/199?version=2, https://usegalaxy.eu/published/workflow?id=036990ecf300a99f, https://usegalaxy.eu/published/workflow?id=05bd1d9c61df5d16, https://usegalaxy.eu/published/workflow?id=0c94260298199d8b, https://usegalaxy.eu/published/workflow?id=20592f292c205954, https://usegalaxy.eu/published/workflow?id=27fca972f1d1a312, https://usegalaxy.eu/published/workflow?id=2d509fad86eb97fb, https://usegalaxy.eu/published/workflow?id=37b04b02ec08e84f, https://usegalaxy.eu/published/workflow?id=4ddf2ec5c460d622, https://usegalaxy.eu/published/workflow?id=6e0330de5d80e619, https://usegalaxy.eu/published/workflow?id=70ec8b1719e25982, https://usegalaxy.eu/published/workflow?id=88f5cef7e4146520, https://usegalaxy.eu/published/workflow?id=9eb29cc96d8d75c2, https://usegalaxy.eu/published/workflow?id=e4e969e9943cdaa5, https://usegalaxy.eu/published/workflow?id=eb03839cc36048f5, https://usegalaxy.fr/published/workflow?id=798c8ff19825ab2c, https://usegalaxy.fr/published/workflow?id=b168a179d1b456cb, https://usegalaxy.org.au/published/workflow?id=1764bb1f506212e8, https://usegalaxy.org.au/published/workflow?id=1782d699b0166725, https://usegalaxy.org.au/published/workflow?id=5a975438c8752269, https://usegalaxy.org.au/published/workflow?id=7a0b3968968c5994, https://usegalaxy.org.au/published/workflow?id=7cc2b5010c56f117, https://usegalaxy.org.au/published/workflow?id=800d28ec61b15244, https://usegalaxy.org.au/published/workflow?id=8e2b94c6fbf44368, https://usegalaxy.org.au/published/workflow?id=91c8daa5f2bcf7c0, https://usegalaxy.org.au/published/workflow?id=989eb73372135796, https://usegalaxy.org.au/published/workflow?id=b601f48ecec15bf4, https://usegalaxy.org.au/published/workflow?id=b920b02a23f94d11, https://usegalaxy.org.au/published/workflow?id=d0d6743450e5060d, https://usegalaxy.org.au/published/workflow?id=fbc732db2a2821b0, https://usegalaxy.org/published/workflow?id=07e761b2501971c6, https://usegalaxy.org/published/workflow?id=2967ef82911f2cca, https://usegalaxy.org/published/workflow?id=2b09f3c9465ee054, https://usegalaxy.org/published/workflow?id=2dceaa255cc8cf83, https://usegalaxy.org/published/workflow?id=6c2bb2209aad5e44, https://usegalaxy.org/published/workflow?id=7af656b8ea5e7e2e, https://usegalaxy.org/published/workflow?id=8a01c78688beae1d, https://usegalaxy.org/published/workflow?id=dcbc71347300822d, https://usegalaxy.org/published/workflow?id=f58c90061c31bd48, https://usegalaxy.org/published/workflow?id=ff3ade25b35f4893, https://workflowhub.eu/workflows/1077?version=1, https://workflowhub.eu/workflows/109?version=9, https://workflowhub.eu/workflows/1551?version=1, https://workflowhub.eu/workflows/1566?version=1 |
epigenetics/methylation-seq, single-cell/scatac-standard-processing-snapatac2 |
|
ribotaper |
ribotaper_create_annotation, ribotaper_create_metaplots, ribotaper_ribosome_profiling |
A method for defining traslated ORFs using Ribosome Profiling data. |
2016-06-07 |
https://ohlerlab.mdc-berlin.de/software/RiboTaper_126/ |
1.3.1a |
ribotaper |
1.3.1 |
To update |
RNA |
Gene expression profiling |
Gene expression profiling |
Functional genomics |
Functional genomics |
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/ribotaper/ |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/ribotaper |
ribotaper |
RiboTaper |
New analysis pipeline for Ribosome Profiling (Ribo-seq) experiments, which exploits the triplet periodicity of ribosomal footprints to call translated regions. |
|
0 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
0 |
32 |
34 |
630 |
740 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
740 |
630 |
34 |
32 |
|
|
|
rmap |
rmap_wrapper |
RMAP for Solexa Short Reads Alignment |
2014-05-19 |
|
1.0.0 |
rmap |
2.1 |
To update |
Next Gen Mappers |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/rmap |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/rmap |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
rmapq |
rmapq_wrapper |
RMAPQ for Solexa Short Reads Alignment with Quality Scores |
2014-05-19 |
|
1.0.0 |
rmap |
2.1 |
To update |
Next Gen Mappers |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/rmapq |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/rmapq |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
rnabob |
rbc_rnabob |
Fast pattern searching for RNA structural motifs |
2015-02-28 |
http://eddylab.org/software.html |
2.2.1.0 |
rnabob |
2.2.1 |
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rnabob |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rnabob |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
9 |
12 |
77 |
198 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
198 |
77 |
12 |
9 |
|
|
|
rnacode |
rbc_rnacode |
Analyze the protein coding potential in MSA |
2015-06-16 |
|
0.3.2 |
rnacode |
0.3 |
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rnacode |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rnacode |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
28 |
35 |
834 |
1363 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1363 |
834 |
35 |
28 |
https://usegalaxy.eu/published/workflow?id=5cd167ed9e159e73, https://usegalaxy.eu/published/workflow?id=8f2d958cee428ca1 |
|
|
rnacommender |
rbc_rnacommender |
RNAcommender is a tool for genome-wide recommendation of RNA-protein interactions. |
2016-05-31 |
https://github.com/gianlucacorrado/RNAcommender |
0.1.1 |
sam |
3.5 |
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/rna_commander/tools/rna_tools/rna_commender |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rnacommender |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
19 |
22 |
53 |
1082 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1082 |
53 |
22 |
19 |
|
|
|
rnaformer |
infer_rnaformer |
RNAformer: RNA secondary structure prediction |
2024-07-11 |
https://github.com/automl/RNAformer |
1.2.0 |
rnaformer |
|
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rnaformer |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rnaformer |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
16 |
16 |
76 |
76 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
76 |
76 |
16 |
16 |
|
|
|
rnalien |
RNAlien |
RNAlien unsupervized RNA family model construction |
2017-03-07 |
http://rna.tbi.univie.ac.at/rnalien/ |
1.3.6 |
rnalien |
1.8.0 |
To update |
RNA, Sequence Analysis |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rnalien |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rnalien |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
9 |
14 |
22 |
33 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
33 |
22 |
14 |
9 |
https://usegalaxy.eu/published/workflow?id=8f2d958cee428ca1 |
|
|
rnashapes |
RNAshapes |
Compute secondary structures of RNA |
2015-02-28 |
|
3.3.0 |
@EXECUTABLE@ |
|
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rna_shapes |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rna_shapes |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
44 |
55 |
213 |
258 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
258 |
213 |
55 |
44 |
|
|
|
rnasnp |
rnasnp |
RNAsnp Efficient detection of local RNA secondary structure changes induced by SNPs |
2016-11-24 |
http://rth.dk/resources/rnasnp/ |
1.2.0 |
rnasnp |
1.2 |
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rnasnp |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rnasnp |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
17 |
21 |
63 |
95 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
95 |
63 |
21 |
17 |
|
|
|
rnaz |
rnaz, rnaz_annotate, rnaz_cluster, rnaz_randomize_aln, rnaz_select_seqs, rnaz_window |
RNAz is a program for predicting structurally conserved and thermodynamically stable RNA secondary structures in multiple sequence alignments. |
2015-02-28 |
https://www.tbi.univie.ac.at/~wash/RNAz/ |
2.1.1 |
rnaz |
2.1.1 |
Up-to-date |
RNA |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_team/rnaz |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rnaz |
|
|
|
|
0 |
0 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
6 |
0 |
51 |
77 |
1084 |
43319 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
43319 |
1084 |
77 |
51 |
https://usegalaxy.eu/published/workflow?id=5cd167ed9e159e73, https://usegalaxy.eu/published/workflow?id=8f2d958cee428ca1 |
|
|
rrna |
meta_rna |
Identification of ribosomal RNA genes in metagenomic fragments. |
2015-02-28 |
http://weizhong-lab.ucsd.edu/meta_rna/ |
0.1 |
hmmsearch3.0 |
|
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rRNA |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rRNA |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
run_jupyter_job |
run_jupyter_job |
Run jupyter notebook script in Galaxy |
2021-12-11 |
|
0.0.1 |
|
|
To update |
Machine Learning |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/jupyter_job |
https://github.com/bgruening/galaxytools/tree/master/tools/jupyter_job |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
33 |
33 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
33 |
33 |
3 |
3 |
|
|
|
sailfish |
sailfish |
Sailfish is a tool for transcript quantification from RNA-seq data |
2015-02-28 |
http://www.cs.cmu.edu/~ckingsf/software/sailfish/ |
0.10.1.1 |
bzip2 |
|
To update |
Sequence Analysis, RNA |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/sailfish |
https://github.com/bgruening/galaxytools/tree/master/tools/sailfish |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
178 |
227 |
3778 |
4615 |
558 |
1202 |
8794 |
15475 |
145 |
177 |
2710 |
3100 |
2 |
2 |
57 |
57 |
23247 |
15339 |
1608 |
883 |
https://usegalaxy.org/published/workflow?id=53834a5fb46ca0f6, https://usegalaxy.org/published/workflow?id=6dada297572d77bd |
|
|
salmon |
alevin, salmon, salmonquantmerge |
Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq and single-cell data. |
2016-03-21 |
https://github.com/COMBINE-lab/salmon |
1.10.1 |
salmon |
1.10.3 |
To update |
Sequence Analysis, RNA, Transcriptomics, Single Cell |
Sequence composition calculation, RNA-Seq quantification, Gene expression analysis |
Sequence composition calculation, RNA-Seq quantification, Gene expression analysis |
RNA-Seq, Gene expression, Transcriptomics |
RNA-Seq, Transcriptomics |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/salmon |
https://github.com/bgruening/galaxytools/tree/master/tools/salmon |
salmon |
Salmon |
A tool for transcript expression quantification from RNA-seq data |
|
2 |
3 |
3 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
1 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
3 |
3 |
3 |
0 |
1954 |
2070 |
76174 |
82244 |
3239 |
4947 |
94398 |
134333 |
508 |
605 |
14122 |
17236 |
139 |
139 |
1263 |
1264 |
235077 |
185957 |
7761 |
5840 |
https://dev.workflowhub.eu/workflows/1024?version=1, https://dev.workflowhub.eu/workflows/1025?version=1, https://dev.workflowhub.eu/workflows/1263?version=1, https://dev.workflowhub.eu/workflows/1279?version=1, https://dev.workflowhub.eu/workflows/1318?version=2, https://usegalaxy.eu/published/workflow?id=0d6bed63a2e4c3d6, https://usegalaxy.eu/published/workflow?id=1590085d315aa80e, https://usegalaxy.eu/published/workflow?id=1d2e17a4f71f2455, https://usegalaxy.eu/published/workflow?id=1e2d27fae8a41ac1, https://usegalaxy.eu/published/workflow?id=1ffc058273ab357e, https://usegalaxy.eu/published/workflow?id=21dd4bd16579fc12, https://usegalaxy.eu/published/workflow?id=2a73d658446747de, https://usegalaxy.eu/published/workflow?id=2d2d0c2231babc50, https://usegalaxy.eu/published/workflow?id=2f37c35ade97aa8d, https://usegalaxy.eu/published/workflow?id=350d7e6976e15d30, https://usegalaxy.eu/published/workflow?id=48fe9c4de045d414, https://usegalaxy.eu/published/workflow?id=65aed668233d5f73, https://usegalaxy.eu/published/workflow?id=67e20e3082d24fbd, https://usegalaxy.eu/published/workflow?id=6fc2b9bea5b75a49, https://usegalaxy.eu/published/workflow?id=83ae28e23099a3f6, https://usegalaxy.eu/published/workflow?id=8bc1c3b9e665ea37, https://usegalaxy.eu/published/workflow?id=9a9bbd8046da7b19, https://usegalaxy.eu/published/workflow?id=c6adc3b665828a6f, https://usegalaxy.eu/published/workflow?id=dd8b55e7768843b1, https://usegalaxy.eu/published/workflow?id=df455b86fff16116, https://usegalaxy.eu/published/workflow?id=e06934a35fc18f2c, https://usegalaxy.eu/published/workflow?id=f28459c5b16549b7, https://usegalaxy.eu/published/workflow?id=f944ad0c35d1a472, https://usegalaxy.eu/published/workflow?id=fe64d430d50faf0b, https://usegalaxy.org.au/published/workflow?id=13a2c5bd07705985, https://usegalaxy.org.au/published/workflow?id=3f45685df9b9e792, https://usegalaxy.org.au/published/workflow?id=954318db8c8d9219, https://usegalaxy.org.au/published/workflow?id=b0614274c66efa95, https://usegalaxy.org/published/workflow?id=07fdeadce7a6d5cb, https://usegalaxy.org/published/workflow?id=08bdcecd1cb0bda3, https://usegalaxy.org/published/workflow?id=092be3cf6e40282c, https://usegalaxy.org/published/workflow?id=0930f955bdac93e8, https://usegalaxy.org/published/workflow?id=173ecc0c88090d0e, https://usegalaxy.org/published/workflow?id=1fe6b25825d9b736, https://usegalaxy.org/published/workflow?id=228ae7f537a60226, https://usegalaxy.org/published/workflow?id=427fce51fd9508eb, https://usegalaxy.org/published/workflow?id=43c39bc86399188f, https://usegalaxy.org/published/workflow?id=5203bc68df3cf819, https://usegalaxy.org/published/workflow?id=6d0a3f36d2736087, https://usegalaxy.org/published/workflow?id=734e08331f8f34b7, https://usegalaxy.org/published/workflow?id=82681bd5f059e39a, https://usegalaxy.org/published/workflow?id=93650de42fb8c015, https://usegalaxy.org/published/workflow?id=a2a924b871b1c96d, https://usegalaxy.org/published/workflow?id=a89def2c2462674a, https://usegalaxy.org/published/workflow?id=aac2ae0419f7d515, https://usegalaxy.org/published/workflow?id=b094b6e1e7d48416, https://usegalaxy.org/published/workflow?id=b1b75a9323d25085, https://usegalaxy.org/published/workflow?id=c2c6779a8b1821e0, https://usegalaxy.org/published/workflow?id=ddb737f2ad0589e8, https://usegalaxy.org/published/workflow?id=dec0cf06fa059e65, https://workflowhub.eu/workflows/1533?version=1, https://workflowhub.eu/workflows/1537?version=1, https://workflowhub.eu/workflows/1676?version=1, https://workflowhub.eu/workflows/1717?version=1 |
single-cell/scrna-case_alevin, transcriptomics/mirna-target-finder, transcriptomics/srna |
|
sam2interval |
sam2interval |
Convert SAM to interval. |
2013-08-26 |
|
1.0.2 |
python |
|
To update |
SAM |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/sam2interval |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/sam2interval |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
60 |
66 |
1280 |
1388 |
159 |
1751 |
2017 |
18324 |
10 |
17 |
534 |
650 |
3 |
3 |
3 |
3 |
20365 |
3834 |
1837 |
232 |
https://usegalaxy.org/published/workflow?id=0115daec07bb1da6, https://usegalaxy.org/published/workflow?id=4b52f6a8dcfc8045, https://usegalaxy.org/published/workflow?id=81183f40d2f3e395, https://usegalaxy.org/published/workflow?id=c6a3b066c3072e4a |
|
|
sam_bitwise_flag_filter |
sam_bw_filter |
Filter SAM on bitwise flag values |
2013-08-26 |
|
1.0.1 |
python |
|
To update |
SAM |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/sam_bitwise_flag_filter |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/sam_bitwise_flag_filter |
|
|
|
|
1 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
6 |
26 |
21 |
278 |
322 |
6351 |
2389 |
76050 |
15 |
29 |
228 |
365 |
2 |
2 |
24 |
24 |
76717 |
2662 |
6408 |
345 |
https://usegalaxy.eu/published/workflow?id=4412f7223a557b48, https://usegalaxy.org/published/workflow?id=0017c434354b6f6a, https://usegalaxy.org/published/workflow?id=055eb85c8ecf0ca3, https://usegalaxy.org/published/workflow?id=07739fbbd53755f6, https://usegalaxy.org/published/workflow?id=165c8a58baffe64c, https://usegalaxy.org/published/workflow?id=1b385fd45ee48614, https://usegalaxy.org/published/workflow?id=1e2e064c33b9c521, https://usegalaxy.org/published/workflow?id=26d2c2d51d6a7158, https://usegalaxy.org/published/workflow?id=2b3970d9b28810a1, https://usegalaxy.org/published/workflow?id=34ed5c1ceeed43c1, https://usegalaxy.org/published/workflow?id=3696bd8abe0f7746, https://usegalaxy.org/published/workflow?id=378159d1ad2e98f9, https://usegalaxy.org/published/workflow?id=38f5ab09779a6495, https://usegalaxy.org/published/workflow?id=4a5730954d776cb2, https://usegalaxy.org/published/workflow?id=4a9b0534b1c88609, https://usegalaxy.org/published/workflow?id=555e68f5c807ff73, https://usegalaxy.org/published/workflow?id=578f46106f72c971, https://usegalaxy.org/published/workflow?id=6172b57f4c49e364, https://usegalaxy.org/published/workflow?id=6f436066dffbc37d, https://usegalaxy.org/published/workflow?id=81183f40d2f3e395, https://usegalaxy.org/published/workflow?id=83fbcdf3e29c41d0, https://usegalaxy.org/published/workflow?id=84aa86200ff74b4a, https://usegalaxy.org/published/workflow?id=92a233e5f2405830, https://usegalaxy.org/published/workflow?id=99e754eaabd7f362, https://usegalaxy.org/published/workflow?id=a23bf4cd3bc97f2a, https://usegalaxy.org/published/workflow?id=a57db139837dd24c, https://usegalaxy.org/published/workflow?id=b2176abeb937f026, https://usegalaxy.org/published/workflow?id=b4bb2c7d8c7b5139, https://usegalaxy.org/published/workflow?id=b4dda054d2cf15b7, https://usegalaxy.org/published/workflow?id=b72edafe11293d93, https://usegalaxy.org/published/workflow?id=c4a1246974f279c5, https://usegalaxy.org/published/workflow?id=c6a3b066c3072e4a, https://usegalaxy.org/published/workflow?id=c7aca0f5bb660907, https://usegalaxy.org/published/workflow?id=ca5ca2f38c1719e1, https://usegalaxy.org/published/workflow?id=e35ac40c58953f74, https://usegalaxy.org/published/workflow?id=e8b1d1e5e889c986, https://usegalaxy.org/published/workflow?id=ea817818a6de77e0, https://usegalaxy.org/published/workflow?id=eb20150175a6ab03, https://usegalaxy.org/published/workflow?id=f3983646b6df24bf |
|
|
sambamba |
sambamba_flagstat, sambamba_markdup, sambamba_merge, sambamba_sort |
Sambamba: process your BAM data faster! |
2016-06-23 |
https://github.com/biod/sambamba |
1.0.1 |
sambamba |
1.0.1 |
Up-to-date |
SAM |
|
|
|
|
bgruening |
https://github.com/biod/sambamba |
https://github.com/bgruening/galaxytools/tree/master/tools/sambamba |
|
|
|
|
0 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
62 |
62 |
2714 |
2714 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2714 |
2714 |
62 |
62 |
https://workflowhub.eu/workflows/1103?version=3, https://workflowhub.eu/workflows/1104?version=2, https://workflowhub.eu/workflows/1164?version=2 |
|
|
sample_seqs |
sample_seqs |
Sub-sample sequences files (e.g. to reduce coverage) |
2014-02-18 |
https://github.com/peterjc/pico_galaxy/tree/master/tools/sample_seqs |
0.2.6 |
biopython |
1.70 |
To update |
Assembly, Fasta Manipulation, Fastq Manipulation, Sequence Analysis |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/sample_seqs |
https://github.com/peterjc/pico_galaxy/tree/master/tools/sample_seqs |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
350 |
404 |
3534 |
4071 |
166 |
166 |
1426 |
1426 |
24 |
24 |
1697 |
1697 |
9 |
9 |
113 |
113 |
7307 |
6770 |
603 |
549 |
|
transcriptomics/mirna-target-finder |
|
samtools_depad |
samtools_depad |
Re-align a SAM/BAM file with a padded reference (using samtools depad) |
2014-04-14 |
http://www.htslib.org/ |
0.0.5 |
samtools |
1.22.1 |
To update |
Assembly, SAM, Sequence Analysis |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/samtools_depad |
https://github.com/peterjc/pico_galaxy/tree/master/tools/samtools_depad |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
samtools_depth |
samtools_depth |
Coverage depth via samtools |
2014-11-19 |
http://www.htslib.org/ |
0.0.3 |
samtools |
1.22.1 |
To update |
Assembly, Sequence Analysis, SAM |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/samtools_depth |
https://github.com/peterjc/pico_galaxy/tree/master/tools/samtools_depth |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
839 |
865 |
7380 |
7615 |
1636 |
1701 |
10500 |
10826 |
55 |
55 |
428 |
428 |
71 |
71 |
109 |
109 |
18978 |
18417 |
2692 |
2601 |
https://dev.workflowhub.eu/workflows/1083?version=1, https://usegalaxy.eu/published/workflow?id=09c7069ae409c362, https://usegalaxy.eu/published/workflow?id=4a764275d4bf9f31, https://usegalaxy.eu/published/workflow?id=60e0b2a28a900178, https://usegalaxy.eu/published/workflow?id=61fe08fb3d5e83f8, https://usegalaxy.eu/published/workflow?id=64abcddeb516a712, https://usegalaxy.eu/published/workflow?id=6aa2891bd2b41f32, https://usegalaxy.eu/published/workflow?id=cdf2f02428f5f83f, https://usegalaxy.eu/published/workflow?id=d215a2e554fd83bc, https://usegalaxy.eu/published/workflow?id=d88145e7475e0b7b, https://usegalaxy.eu/published/workflow?id=fc0b9efa7d2e61e6, https://usegalaxy.org.au/published/workflow?id=0e11619979c2830c, https://usegalaxy.org.au/published/workflow?id=244ea5e94237ebad, https://usegalaxy.org.au/published/workflow?id=38f57cffaeb0e39f, https://usegalaxy.org.au/published/workflow?id=76a0a3af8de11622, https://usegalaxy.org.au/published/workflow?id=857e482acfcb2dba, https://usegalaxy.org/published/workflow?id=06d6dcd2655592af, https://usegalaxy.org/published/workflow?id=29ba77708cdafe0f, https://usegalaxy.org/published/workflow?id=2ded909e7e3a9962, https://usegalaxy.org/published/workflow?id=38911ba6f66d80f6, https://usegalaxy.org/published/workflow?id=3e703abaeb870f6f, https://usegalaxy.org/published/workflow?id=3f2d1003ff959c7c, https://usegalaxy.org/published/workflow?id=6d778eeb176d563c, https://usegalaxy.org/published/workflow?id=71f8a4090877f171, https://usegalaxy.org/published/workflow?id=8daa91d54040ba95, https://usegalaxy.org/published/workflow?id=b561d3d9645a2726, https://usegalaxy.org/published/workflow?id=c4af6c5f5dfaae82, https://usegalaxy.org/published/workflow?id=cb810cdaa4915f4b, https://usegalaxy.org/published/workflow?id=f3ed710e251833a7, https://workflowhub.eu/workflows/1063?version=5, https://workflowhub.eu/workflows/1479?version=1, https://workflowhub.eu/workflows/1738?version=1, https://workflowhub.eu/workflows/1739?version=1, https://workflowhub.eu/workflows/1740?version=1, https://workflowhub.eu/workflows/1741?version=1 |
microbiome/pathogen-detection-from-nanopore-foodborne-data |
|
samtools_idxstats |
samtools_idxstats |
BAM mapping statistics (using samtools idxstats) |
2013-11-11 |
http://www.htslib.org/ |
0.0.6 |
samtools |
1.22.1 |
To update |
Assembly, Next Gen Mappers, SAM |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/samtools_idxstats |
https://github.com/peterjc/pico_galaxy/tree/master/tools/samtools_idxstats |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
4479 |
5091 |
58483 |
62721 |
7420 |
10891 |
79415 |
118342 |
1280 |
1525 |
16552 |
17651 |
447 |
447 |
2609 |
2609 |
201323 |
157059 |
17954 |
13626 |
https://dev.workflowhub.eu/workflows/1150?version=2, https://dev.workflowhub.eu/workflows/1153?version=2, https://dev.workflowhub.eu/workflows/1175?version=2, https://dev.workflowhub.eu/workflows/1295?version=1, https://dev.workflowhub.eu/workflows/1299?version=2, https://dev.workflowhub.eu/workflows/1329?version=5, https://dev.workflowhub.eu/workflows/574?version=1, https://usegalaxy.eu/published/workflow?id=1089e5c66dbcc1a3, https://usegalaxy.eu/published/workflow?id=111527fe542846af, https://usegalaxy.eu/published/workflow?id=20ada53472782c9b, https://usegalaxy.eu/published/workflow?id=25aa944237d7fb82, https://usegalaxy.eu/published/workflow?id=2f51a82838722bec, https://usegalaxy.eu/published/workflow?id=30e7dc81e323cbdb, https://usegalaxy.eu/published/workflow?id=36a4646959829018, https://usegalaxy.eu/published/workflow?id=3b8ef7905c902b27, https://usegalaxy.eu/published/workflow?id=45f63151bf4f1a49, https://usegalaxy.eu/published/workflow?id=48f63ef14a12f306, https://usegalaxy.eu/published/workflow?id=4daa0c33d6d50379, https://usegalaxy.eu/published/workflow?id=54b91dd86f463391, https://usegalaxy.eu/published/workflow?id=7e0ba4c14803448e, https://usegalaxy.eu/published/workflow?id=8132c3b710fd6d48, https://usegalaxy.eu/published/workflow?id=93a7047396080fda, https://usegalaxy.eu/published/workflow?id=94b9287365ea4d0d, https://usegalaxy.eu/published/workflow?id=985044b4b2c51425, https://usegalaxy.eu/published/workflow?id=99022559adf01c4a, https://usegalaxy.eu/published/workflow?id=a28c207730e7e13d, https://usegalaxy.eu/published/workflow?id=c3eba26c5d7febff, https://usegalaxy.eu/published/workflow?id=c9aff55e39e195e3, https://usegalaxy.eu/published/workflow?id=cc37667c2d1f9056, https://usegalaxy.eu/published/workflow?id=d12617d0df5f81d0, https://usegalaxy.eu/published/workflow?id=d83280cd72ec0f33, https://usegalaxy.eu/published/workflow?id=f14ebad1c3c20067, https://usegalaxy.org.au/published/workflow?id=0f48060aa1bd41a5, https://usegalaxy.org.au/published/workflow?id=2b0a986519532412, https://usegalaxy.org.au/published/workflow?id=32d28f800adcea42, https://usegalaxy.org.au/published/workflow?id=38f57cffaeb0e39f, https://usegalaxy.org.au/published/workflow?id=3c1b1f210c7c292b, https://usegalaxy.org.au/published/workflow?id=3e7fcfd23872ad0d, https://usegalaxy.org.au/published/workflow?id=52056336f24eccf6, https://usegalaxy.org.au/published/workflow?id=6b3df543536faf8c, https://usegalaxy.org.au/published/workflow?id=738c0e8227519c25, https://usegalaxy.org.au/published/workflow?id=75113a1b41904d2a, https://usegalaxy.org.au/published/workflow?id=79f4bdf9aab7c256, https://usegalaxy.org.au/published/workflow?id=83c20d8e5fd97313, https://usegalaxy.org.au/published/workflow?id=85aede91db0122e4, https://usegalaxy.org.au/published/workflow?id=af7b95f46485308c, https://usegalaxy.org.au/published/workflow?id=b08342866a118a5e, https://usegalaxy.org.au/published/workflow?id=ce7f6a1c824920e2, https://usegalaxy.org.au/published/workflow?id=d69a765cfc82a399, https://usegalaxy.org.au/published/workflow?id=daff6854b5dfc6f1, https://usegalaxy.org.au/published/workflow?id=e1fd89e7248b6661, https://usegalaxy.org/published/workflow?id=00bc4e99626da1ba, https://usegalaxy.org/published/workflow?id=01585f1230125ba1, https://usegalaxy.org/published/workflow?id=02755c14619242da, https://usegalaxy.org/published/workflow?id=02c96a9c6bb708ac, https://usegalaxy.org/published/workflow?id=044c5ce43f2e1829, https://usegalaxy.org/published/workflow?id=049e6609da2b67c4, https://usegalaxy.org/published/workflow?id=0660a00407fc16a1, https://usegalaxy.org/published/workflow?id=06d6dcd2655592af, https://usegalaxy.org/published/workflow?id=0843c6f15eae2f15, https://usegalaxy.org/published/workflow?id=0c6dbb2ef5eee5b9, https://usegalaxy.org/published/workflow?id=0d8ec47a84766f96, https://usegalaxy.org/published/workflow?id=0ebb1f5b6c9c8ab9, https://usegalaxy.org/published/workflow?id=10d8d47f97afc999, https://usegalaxy.org/published/workflow?id=1250ec3ad6199cda, https://usegalaxy.org/published/workflow?id=13a1fa4f6daf65cc, https://usegalaxy.org/published/workflow?id=156e245e3d9f22ce, https://usegalaxy.org/published/workflow?id=15ea806eaf077617, https://usegalaxy.org/published/workflow?id=17a7ff756d37a437, https://usegalaxy.org/published/workflow?id=17f3d7e52777d2e8, https://usegalaxy.org/published/workflow?id=1deaf458d6d8695a, https://usegalaxy.org/published/workflow?id=1e1d7fac7e241768, https://usegalaxy.org/published/workflow?id=1f4dc0488f0554c6, https://usegalaxy.org/published/workflow?id=1fdd58f4b7a6f643, https://usegalaxy.org/published/workflow?id=1ffc71df8eeed57e, https://usegalaxy.org/published/workflow?id=20023b26bb60f4df, https://usegalaxy.org/published/workflow?id=21a047a4e068860f, https://usegalaxy.org/published/workflow?id=22f6b939e97d3b47, https://usegalaxy.org/published/workflow?id=23c4e801213eee50, https://usegalaxy.org/published/workflow?id=2497103d279cd20e, https://usegalaxy.org/published/workflow?id=2524e026f069e885, https://usegalaxy.org/published/workflow?id=262ab42118016c41, https://usegalaxy.org/published/workflow?id=2644a8c0da3066c5, https://usegalaxy.org/published/workflow?id=26c4909f2f3df704, https://usegalaxy.org/published/workflow?id=28abac549697f65a, https://usegalaxy.org/published/workflow?id=2957924403998f3a, https://usegalaxy.org/published/workflow?id=2af3de32c630e1b4, https://usegalaxy.org/published/workflow?id=2b5346b94358df88, https://usegalaxy.org/published/workflow?id=2bf89464c21ec7cd, https://usegalaxy.org/published/workflow?id=2cc5472ad7c039d1, https://usegalaxy.org/published/workflow?id=2ceff2cf26eae4cd, https://usegalaxy.org/published/workflow?id=2d30be556aab1f52, https://usegalaxy.org/published/workflow?id=2db2d27f0c627f44, https://usegalaxy.org/published/workflow?id=2dd4f04c7de7d173, https://usegalaxy.org/published/workflow?id=2e65bc5f9d9f2a75, https://usegalaxy.org/published/workflow?id=31acbfc6d3775846, https://usegalaxy.org/published/workflow?id=336795e890851c21, https://usegalaxy.org/published/workflow?id=3673a1ced343d0d0, https://usegalaxy.org/published/workflow?id=39753cc73284963f, https://usegalaxy.org/published/workflow?id=39e79458c9ba581c, https://usegalaxy.org/published/workflow?id=3bed12ef73ba93bf, https://usegalaxy.org/published/workflow?id=3dc57709c4387ba7, https://usegalaxy.org/published/workflow?id=3f2d1003ff959c7c, https://usegalaxy.org/published/workflow?id=4054ceeba1a2fa69, https://usegalaxy.org/published/workflow?id=415c7152cb78e86f, https://usegalaxy.org/published/workflow?id=41bbf3cd893d400a, https://usegalaxy.org/published/workflow?id=43861b38cf6e927e, https://usegalaxy.org/published/workflow?id=449a419bcfd3c49e, https://usegalaxy.org/published/workflow?id=46e4acdc08eb3ea5, https://usegalaxy.org/published/workflow?id=46e718fb8eeb4d54, https://usegalaxy.org/published/workflow?id=472f73c3e81da1d9, https://usegalaxy.org/published/workflow?id=4a95226c24ccbf3c, https://usegalaxy.org/published/workflow?id=4d0607d3589e0775, https://usegalaxy.org/published/workflow?id=4d251ecda59c87c5, https://usegalaxy.org/published/workflow?id=4e3efbdd0c4c3e64, https://usegalaxy.org/published/workflow?id=4ed9f54caa932479, https://usegalaxy.org/published/workflow?id=4f459cfef6108e75, https://usegalaxy.org/published/workflow?id=50206b10de958d03, https://usegalaxy.org/published/workflow?id=506acac8c6a58d5e, https://usegalaxy.org/published/workflow?id=51754f5039d2f244, https://usegalaxy.org/published/workflow?id=527adadecbab2eb6, https://usegalaxy.org/published/workflow?id=52bde903adbbaf60, https://usegalaxy.org/published/workflow?id=52e2b69787ca7a17, https://usegalaxy.org/published/workflow?id=553125cd799e5982, https://usegalaxy.org/published/workflow?id=55c09bcdf3d7ae16, https://usegalaxy.org/published/workflow?id=57726b39bbfb0c54, https://usegalaxy.org/published/workflow?id=57cfc1b5d9ea0d72, https://usegalaxy.org/published/workflow?id=57fdd0bae83f2c97, https://usegalaxy.org/published/workflow?id=59007e2bc9c807ee, https://usegalaxy.org/published/workflow?id=5951d11d3122abed, https://usegalaxy.org/published/workflow?id=5cad854edbbd3b69, https://usegalaxy.org/published/workflow?id=5d1208bd49f97aeb, https://usegalaxy.org/published/workflow?id=5eb2e090df59d9a9, https://usegalaxy.org/published/workflow?id=5fa548beeb1411f2, https://usegalaxy.org/published/workflow?id=5ffeb9904cf5f0bf, https://usegalaxy.org/published/workflow?id=60b9910b7bb69f47, https://usegalaxy.org/published/workflow?id=60e999ef3dcff4ca, https://usegalaxy.org/published/workflow?id=61d03396ad7f25b9, https://usegalaxy.org/published/workflow?id=658f6e4985b6e4a7, https://usegalaxy.org/published/workflow?id=668df61f85b5b166, https://usegalaxy.org/published/workflow?id=67e3457099db3ed2, https://usegalaxy.org/published/workflow?id=6822f413a3b09cb4, https://usegalaxy.org/published/workflow?id=688a55b9ec2f5bf7, https://usegalaxy.org/published/workflow?id=692a2b0bb818336d, https://usegalaxy.org/published/workflow?id=695152887ca01bf0, https://usegalaxy.org/published/workflow?id=695d20ef3ee4cf1e, https://usegalaxy.org/published/workflow?id=6a08af55c086ec62, https://usegalaxy.org/published/workflow?id=6a174e7498434bd5, https://usegalaxy.org/published/workflow?id=6d68f56abf9c624d, https://usegalaxy.org/published/workflow?id=6d8f0be547b12528, https://usegalaxy.org/published/workflow?id=6db96a9c7e4b8d14, https://usegalaxy.org/published/workflow?id=6dd383fd86fea674, https://usegalaxy.org/published/workflow?id=7022c4d9af725e5c, https://usegalaxy.org/published/workflow?id=7203eb3b663bca11, https://usegalaxy.org/published/workflow?id=75fffbce810acaf3, https://usegalaxy.org/published/workflow?id=76247065c01f01d1, https://usegalaxy.org/published/workflow?id=779ea0b19d07a1bd, https://usegalaxy.org/published/workflow?id=78979ec454b98338, https://usegalaxy.org/published/workflow?id=7965d84a9f71da93, https://usegalaxy.org/published/workflow?id=7a2b4675c758f34e, https://usegalaxy.org/published/workflow?id=7b9e17cb1d72d7e4, https://usegalaxy.org/published/workflow?id=7c3faadda8f89749, https://usegalaxy.org/published/workflow?id=7c4a2339b17a8930, https://usegalaxy.org/published/workflow?id=7d110e1fca0ac973, https://usegalaxy.org/published/workflow?id=7decdde67868ed0f, https://usegalaxy.org/published/workflow?id=7e9269e78e989480, https://usegalaxy.org/published/workflow?id=7fb4dae5daab0522, https://usegalaxy.org/published/workflow?id=8041fad92ef6e904, https://usegalaxy.org/published/workflow?id=8095deba606ebd5e, https://usegalaxy.org/published/workflow?id=85bc37a59a6ea443, https://usegalaxy.org/published/workflow?id=8689dc9eac10c871, https://usegalaxy.org/published/workflow?id=86b802ea75d18160, https://usegalaxy.org/published/workflow?id=884ee0057bde9135, https://usegalaxy.org/published/workflow?id=885f0e66fa6b8790, https://usegalaxy.org/published/workflow?id=88e10493f7e6b9d5, https://usegalaxy.org/published/workflow?id=89660361d4121fa8, https://usegalaxy.org/published/workflow?id=8a215695e7b57cf5, https://usegalaxy.org/published/workflow?id=8b08a05c5926dd0f, https://usegalaxy.org/published/workflow?id=8b133c1d302c8681, https://usegalaxy.org/published/workflow?id=8bf608c6fd0dabd0, https://usegalaxy.org/published/workflow?id=8c1516493c55bf7d, https://usegalaxy.org/published/workflow?id=8caea3788657235d, https://usegalaxy.org/published/workflow?id=8daa91d54040ba95, https://usegalaxy.org/published/workflow?id=906cc2c2d4e24483, https://usegalaxy.org/published/workflow?id=907aaf55487ddf43, https://usegalaxy.org/published/workflow?id=916a116b69ac5eeb, https://usegalaxy.org/published/workflow?id=91806144e90637e8, https://usegalaxy.org/published/workflow?id=9255c0c9017b139f, https://usegalaxy.org/published/workflow?id=93cb976bd4ae546e, https://usegalaxy.org/published/workflow?id=96ae2544e22d34c5, https://usegalaxy.org/published/workflow?id=97c20a819394e381, https://usegalaxy.org/published/workflow?id=98a4b90f7fc2bfce, https://usegalaxy.org/published/workflow?id=99bc7ba3faa7ed55, https://usegalaxy.org/published/workflow?id=99ee567c092fb34c, https://usegalaxy.org/published/workflow?id=9d626a89800a96ca, https://usegalaxy.org/published/workflow?id=9e9a027e0c294a79, https://usegalaxy.org/published/workflow?id=9eb29b71d7effefc, https://usegalaxy.org/published/workflow?id=9f5f2e309a3ea50c, https://usegalaxy.org/published/workflow?id=a164d857439a126f, https://usegalaxy.org/published/workflow?id=a37961bf3d435918, https://usegalaxy.org/published/workflow?id=a3f7a57dbf8f0741, https://usegalaxy.org/published/workflow?id=a4a56efb37d845bf, https://usegalaxy.org/published/workflow?id=a4f7af1e2cd826c3, https://usegalaxy.org/published/workflow?id=a89eaad3f42ec41c, https://usegalaxy.org/published/workflow?id=a98a3ac1a41752bc, https://usegalaxy.org/published/workflow?id=a99a938953be5fd6, https://usegalaxy.org/published/workflow?id=ab6e4277fc825c5d, https://usegalaxy.org/published/workflow?id=ab8590a0ee1b9951, https://usegalaxy.org/published/workflow?id=adb86df9061dca2b, https://usegalaxy.org/published/workflow?id=adf531bc12766c9b, https://usegalaxy.org/published/workflow?id=ae83fb92e697e009, https://usegalaxy.org/published/workflow?id=af5acb5dd7bfac56, https://usegalaxy.org/published/workflow?id=af5d714396856e9a, https://usegalaxy.org/published/workflow?id=afd7633a34d68704, https://usegalaxy.org/published/workflow?id=b1004c9974ceb785, https://usegalaxy.org/published/workflow?id=b11796364c22235e, https://usegalaxy.org/published/workflow?id=b16a1642e2cd54a2, https://usegalaxy.org/published/workflow?id=b1dc9cf054a63be5, https://usegalaxy.org/published/workflow?id=b3026f28a45626a5, https://usegalaxy.org/published/workflow?id=b33ad2032a655706, https://usegalaxy.org/published/workflow?id=b461ac6f18e0c9cf, https://usegalaxy.org/published/workflow?id=b4d57f2aa0678ad2, https://usegalaxy.org/published/workflow?id=b50f2446d5e60334, https://usegalaxy.org/published/workflow?id=b561d3d9645a2726, https://usegalaxy.org/published/workflow?id=b5e8f4a0ff226921, https://usegalaxy.org/published/workflow?id=b63d1e1024cc3295, https://usegalaxy.org/published/workflow?id=b6d90898e2db6aba, https://usegalaxy.org/published/workflow?id=b78a75ae89ae4c79, https://usegalaxy.org/published/workflow?id=b8804291f2754fc8, https://usegalaxy.org/published/workflow?id=b9e6ddbc79904844, https://usegalaxy.org/published/workflow?id=ba405b449e27ba37, https://usegalaxy.org/published/workflow?id=ba68fd4b4348e63c, https://usegalaxy.org/published/workflow?id=bb16936081b820f6, https://usegalaxy.org/published/workflow?id=bb25ac3ba4863424, https://usegalaxy.org/published/workflow?id=bbe958a8c0bf4955, https://usegalaxy.org/published/workflow?id=bd184804cfddafc4, https://usegalaxy.org/published/workflow?id=bfd3ba54576d2d81, https://usegalaxy.org/published/workflow?id=bfee1238c70627cb, https://usegalaxy.org/published/workflow?id=c11dfc3314e33b33, https://usegalaxy.org/published/workflow?id=c4aaf11b0cb6e5ac, https://usegalaxy.org/published/workflow?id=c4af6c5f5dfaae82, https://usegalaxy.org/published/workflow?id=c57c820557ae9b55, https://usegalaxy.org/published/workflow?id=c81833a367445f98, https://usegalaxy.org/published/workflow?id=c95fc8692a886a59, https://usegalaxy.org/published/workflow?id=c9e442a395fc1a58, https://usegalaxy.org/published/workflow?id=ca36eebd59575df3, https://usegalaxy.org/published/workflow?id=cbbd7e95041d9429, https://usegalaxy.org/published/workflow?id=cd5f803c80875b9c, https://usegalaxy.org/published/workflow?id=cd824d8631d6a55e, https://usegalaxy.org/published/workflow?id=ced446bf2428497b, https://usegalaxy.org/published/workflow?id=cf3320614654adfe, https://usegalaxy.org/published/workflow?id=cfd37af9d6e4cbdb, https://usegalaxy.org/published/workflow?id=d00ac64dcd07f91a, https://usegalaxy.org/published/workflow?id=d0981820adf9c7d2, https://usegalaxy.org/published/workflow?id=d196c3bde666eccb, https://usegalaxy.org/published/workflow?id=d2edc47cc7963885, https://usegalaxy.org/published/workflow?id=d314df52f2f51502, https://usegalaxy.org/published/workflow?id=d4029ce1344e874a, https://usegalaxy.org/published/workflow?id=d50b2df115706adb, https://usegalaxy.org/published/workflow?id=d7049965ca7d8ea9, https://usegalaxy.org/published/workflow?id=d7d65ee5c5ca951f, https://usegalaxy.org/published/workflow?id=d7e14ff032a6ac4f, https://usegalaxy.org/published/workflow?id=d85f8ef78040fbb1, https://usegalaxy.org/published/workflow?id=d903c7215a88c79f, https://usegalaxy.org/published/workflow?id=dbc650d226e89013, https://usegalaxy.org/published/workflow?id=dbcf0fbf5329b3fb, https://usegalaxy.org/published/workflow?id=dbdc894ad54675a8, https://usegalaxy.org/published/workflow?id=dcf658333596d76a, https://usegalaxy.org/published/workflow?id=de2861cdbd4e29ce, https://usegalaxy.org/published/workflow?id=de29cd965a2e93d3, https://usegalaxy.org/published/workflow?id=df24d76ebf13e3c1, https://usegalaxy.org/published/workflow?id=dff3cf6921b3d4d6, https://usegalaxy.org/published/workflow?id=e0ec503626fa0d58, https://usegalaxy.org/published/workflow?id=e2c77aeabb8053b4, https://usegalaxy.org/published/workflow?id=e2d7b8a4e6c422a3, https://usegalaxy.org/published/workflow?id=e42a07b777c9f9dc, https://usegalaxy.org/published/workflow?id=e57d595b0cde1614, https://usegalaxy.org/published/workflow?id=e58a87508a337b91, https://usegalaxy.org/published/workflow?id=e67db5dc8eab60f3, https://usegalaxy.org/published/workflow?id=e6a6223ef5ef85a7, https://usegalaxy.org/published/workflow?id=e6b803c1232cd08e, https://usegalaxy.org/published/workflow?id=e6f57346a02be07f, https://usegalaxy.org/published/workflow?id=e899acc664c8b808, https://usegalaxy.org/published/workflow?id=e9ffad95baa43478, https://usegalaxy.org/published/workflow?id=ea4c2defce2f5258, https://usegalaxy.org/published/workflow?id=eafe4aa62a600e1d, https://usegalaxy.org/published/workflow?id=ebbcdc389aad0eb8, https://usegalaxy.org/published/workflow?id=ebc9aad36017b567, https://usegalaxy.org/published/workflow?id=ec3d8d5d1531f92e, https://usegalaxy.org/published/workflow?id=ec96e3bf30d5f771, https://usegalaxy.org/published/workflow?id=edb299ecbf147618, https://usegalaxy.org/published/workflow?id=ee3b8d7ba29da11c, https://usegalaxy.org/published/workflow?id=ef44d02a79bd28bf, https://usegalaxy.org/published/workflow?id=f0ee8bcd7c8fadca, https://usegalaxy.org/published/workflow?id=f0feca8af9aeddba, https://usegalaxy.org/published/workflow?id=f23e5f333987a89f, https://usegalaxy.org/published/workflow?id=f302d673420a9bdd, https://usegalaxy.org/published/workflow?id=f3ed710e251833a7, https://usegalaxy.org/published/workflow?id=f4ed1c9434ed0445, https://usegalaxy.org/published/workflow?id=f60818a405f1bbbd, https://usegalaxy.org/published/workflow?id=f63f7a0a33a83841, https://usegalaxy.org/published/workflow?id=f88f186bc851e954, https://usegalaxy.org/published/workflow?id=f9d546aae406cf15, https://usegalaxy.org/published/workflow?id=fae519dcba6bfc72, https://usegalaxy.org/published/workflow?id=fcbe12fc4eaae12e, https://workflowhub.eu/workflows/1606?version=1, https://workflowhub.eu/workflows/1615?version=1, https://workflowhub.eu/workflows/1620?version=1, https://workflowhub.eu/workflows/1692?version=1, https://workflowhub.eu/workflows/1695?version=1, https://workflowhub.eu/workflows/1715?version=1, https://workflowhub.eu/workflows/399?version=19 |
epigenetics/atac-seq, epigenetics/estrogen-receptor-binding-site-identification, epigenetics/formation_of_super-structures_on_xi, epigenetics/tal1-binding-site-identification, transcriptomics/ref-based, transcriptomics/rna-seq-reads-to-counts |
|
scatterplot |
scatterplot_rpy |
Scatterplot of two numeric columns |
2014-07-28 |
|
1.0.3 |
numpy |
|
To update |
Graphics, Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/scatterplot |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/scatterplot |
|
|
|
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
189 |
280 |
1136 |
1838 |
213 |
1950 |
725 |
9362 |
0 |
18 |
0 |
49 |
14 |
14 |
41 |
41 |
11290 |
1902 |
2262 |
416 |
https://usegalaxy.eu/published/workflow?id=17ad465d9515cd25, https://usegalaxy.org/published/workflow?id=857db984ff571191 |
|
|
sed_wrapper |
sed_stream_editor |
Manipulate your data with the sed command line tool. |
2015-02-28 |
https://github.com/bgruening/galaxytools/tree/master/tools/sed |
0.0.1 |
sed |
|
To update |
Text Manipulation |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/sed |
https://github.com/bgruening/galaxytools/tree/master/tools/sed |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
9 |
53 |
115 |
2284 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2284 |
115 |
53 |
9 |
https://usegalaxy.eu/published/workflow?id=04dbf1e548db74fd, https://usegalaxy.eu/published/workflow?id=c94a1d028357c81e, https://usegalaxy.eu/published/workflow?id=f7a7c72489d6b3d4 |
|
|
segemehl |
segemehl |
segemehl - short read mapping with gaps |
2015-02-28 |
http://www.bioinf.uni-leipzig.de/Software/segemehl/ |
0.2.0.4 |
segemehl |
0.3.4 |
To update |
Next Gen Mappers |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/segemehl |
https://github.com/bgruening/galaxytools/tree/master/tools/segemehl |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
95 |
115 |
1001 |
1308 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1308 |
1001 |
115 |
95 |
|
|
|
selectsequencesfrommsa |
selectsequencesfrommsa |
SelectSequences - selects representative entries from a multiple sequence alignment in clustal format |
2017-03-11 |
https://github.com/eggzilla/SelectSequences |
1.0.5 |
selectsequencesfrommsa |
1.0.5 |
Up-to-date |
RNA, Sequence Analysis |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/selectsequencesfrommsa |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/selectsequencesfrommsa |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
42 |
51 |
272 |
473 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
473 |
272 |
51 |
42 |
https://usegalaxy.eu/published/workflow?id=5cd167ed9e159e73, https://usegalaxy.eu/published/workflow?id=8f2d958cee428ca1 |
|
|
seq_composition |
seq_composition |
Sequence composition |
2014-08-12 |
https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_composition |
0.0.5 |
biopython |
1.70 |
To update |
Sequence Analysis |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_composition |
https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_composition |
|
|
|
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
163 |
222 |
1224 |
1358 |
234 |
234 |
759 |
759 |
0 |
0 |
0 |
0 |
2 |
2 |
45 |
45 |
2162 |
2028 |
458 |
399 |
https://usegalaxy.eu/published/workflow?id=33312e5643279e8a, https://usegalaxy.eu/published/workflow?id=9275d0c90a8713d6 |
|
|
seq_filter_by_id |
seq_filter_by_id |
Filter sequences by ID |
2013-09-26 |
https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_filter_by_id |
0.2.9 |
biopython |
1.70 |
To update |
Fasta Manipulation, Sequence Analysis, Text Manipulation |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_filter_by_id |
https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_filter_by_id |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
786 |
880 |
31030 |
33625 |
690 |
692 |
29316 |
39481 |
166 |
166 |
3249 |
3249 |
26 |
26 |
954 |
954 |
77309 |
64549 |
1764 |
1668 |
https://dev.workflowhub.eu/workflows/1274?version=2, https://dev.workflowhub.eu/workflows/1397?version=1, https://usegalaxy.eu/published/workflow?id=1f88311a8e365c17, https://usegalaxy.eu/published/workflow?id=3280dc48d768b46a, https://usegalaxy.eu/published/workflow?id=33312e5643279e8a, https://usegalaxy.eu/published/workflow?id=4a39d38fde81e35d, https://usegalaxy.eu/published/workflow?id=513389e1a8c6bba9, https://usegalaxy.eu/published/workflow?id=57d3109f32defa3b, https://usegalaxy.eu/published/workflow?id=58955868b504c60d, https://usegalaxy.eu/published/workflow?id=889f2782ad82bd69, https://usegalaxy.eu/published/workflow?id=afad9a17a80bb26d, https://usegalaxy.eu/published/workflow?id=bdc7cfaac0db2eab, https://usegalaxy.eu/published/workflow?id=bebcbd6f0ffa55c5, https://usegalaxy.eu/published/workflow?id=c09159d7aad0f264, https://usegalaxy.eu/published/workflow?id=d7aa4c258e2edc95, https://usegalaxy.eu/published/workflow?id=fc0b9efa7d2e61e6, https://usegalaxy.org.au/published/workflow?id=470eb26144325590, https://usegalaxy.org.au/published/workflow?id=a1b97364f84022cf, https://usegalaxy.org/published/workflow?id=3c7349268d74c576, https://workflowhub.eu/workflows/1507?version=1, https://workflowhub.eu/workflows/1702?version=1, https://workflowhub.eu/workflows/655?version=1, https://workflowhub.eu/workflows/878?version=1 |
ecology/Obitools-metabarcoding, single-cell/scrna-umis |
|
seq_filter_by_mapping |
seq_filter_by_mapping |
Filter sequencing reads using SAM/BAM mapping files |
2014-11-04 |
https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_filter_by_mapping |
0.0.8 |
biopython |
1.70 |
To update |
Assembly, Fasta Manipulation, Fastq Manipulation, SAM, Sequence Analysis |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_filter_by_mapping |
https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_filter_by_mapping |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
184 |
221 |
4363 |
4832 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4832 |
4363 |
221 |
184 |
https://usegalaxy.eu/published/workflow?id=9668976304efea5c |
|
|
seq_length |
seq_length |
Compute sequence length (from FASTA, QUAL, FASTQ, SFF, etc) |
2018-05-08 |
https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_length |
0.0.5 |
biopython |
1.70 |
To update |
Fasta Manipulation, Fastq Manipulation, Sequence Analysis |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_length |
https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_length |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
seq_primer_clip |
seq_primer_clip |
Trim off 5' or 3' primers |
2013-09-26 |
https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_primer_clip |
0.0.18 |
galaxy_sequence_utils |
1.2.0 |
To update |
Assembly, Fasta Manipulation, Text Manipulation |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_primer_clip |
https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_primer_clip |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
seq_rename |
seq_rename |
Rename sequences with ID mapping from a tabular file |
2013-09-26 |
https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_rename |
0.0.10 |
galaxy_sequence_utils |
1.2.0 |
To update |
Fasta Manipulation, Sequence Analysis, Text Manipulation |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_rename |
https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_rename |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
seq_select_by_id |
seq_select_by_id |
Select sequences by ID |
2013-09-26 |
https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_select_by_id |
0.0.15 |
biopython |
1.70 |
To update |
Fasta Manipulation, Sequence Analysis, Text Manipulation |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_select_by_id |
https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_select_by_id |
|
|
|
|
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
264 |
295 |
2355 |
3744 |
10 |
12 |
434 |
483 |
4227 |
2789 |
307 |
274 |
|
|
|
short_reads_figure_high_quality_length |
hist_high_quality_score |
Histogram of high quality score reads |
2014-05-19 |
|
1.0.0 |
rpy |
|
To update |
Sequence Analysis, Graphics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/short_reads_figure_high_quality_length |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/short_reads_figure_high_quality_length |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
short_reads_figure_score |
quality_score_distribution |
Build base quality distribution |
2014-05-19 |
|
1.0.2 |
fontconfig |
|
To update |
Sequence Analysis, Graphics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/short_reads_figure_score |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/short_reads_figure_score |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
25 |
30 |
123 |
163 |
11 |
711 |
125 |
3360 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3523 |
248 |
741 |
36 |
|
|
|
short_reads_trim_seq |
trim_reads |
Select high quality segments |
2014-05-19 |
|
1.0.0 |
|
|
To update |
Fastq Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/short_reads_trim_seq |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/short_reads_trim_seq |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
44 |
60 |
134 |
220 |
54 |
1602 |
242 |
6657 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6877 |
376 |
1662 |
98 |
https://usegalaxy.org/published/workflow?id=19c9c8cc3c813bda, https://usegalaxy.org/published/workflow?id=2f7638035fb889ac, https://usegalaxy.org/published/workflow?id=55aa743125c2465d, https://usegalaxy.org/published/workflow?id=59347cc210c4cdbc, https://usegalaxy.org/published/workflow?id=7294f75ad01ca7ed, https://usegalaxy.org/published/workflow?id=85d825931edf4a64, https://usegalaxy.org/published/workflow?id=896d29573ea3e574, https://usegalaxy.org/published/workflow?id=d851f8436497dd1c |
|
|
show_beginning |
Show beginning1 |
Select lines from the beginning of a file. |
2012-12-04 |
|
1.0.0 |
|
|
To update |
Text Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/show_beginning |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/show_beginning |
|
|
|
|
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
1 |
0 |
0 |
0 |
1 |
1 |
0 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
2238 |
3054 |
79660 |
89440 |
4209 |
19273 |
18641 |
88049 |
408 |
499 |
2924 |
3461 |
135 |
135 |
503 |
605 |
181555 |
101728 |
22961 |
6990 |
https://dev.workflowhub.eu/workflows/1090?version=2, https://dev.workflowhub.eu/workflows/1206?version=1, https://dev.workflowhub.eu/workflows/1336?version=2, https://usegalaxy.eu/published/workflow?id=035f85c1615e0b7b, https://usegalaxy.eu/published/workflow?id=04b838103aed1929, https://usegalaxy.eu/published/workflow?id=1ac5745645634825, https://usegalaxy.eu/published/workflow?id=20ada53472782c9b, https://usegalaxy.eu/published/workflow?id=272e9106e50c9fe6, https://usegalaxy.eu/published/workflow?id=29346872085adf1f, https://usegalaxy.eu/published/workflow?id=2f7149d02db43b7b, https://usegalaxy.eu/published/workflow?id=3e91f8417a66d02c, https://usegalaxy.eu/published/workflow?id=3f61bd49caa49440, https://usegalaxy.eu/published/workflow?id=4a33a8348ac03f00, https://usegalaxy.eu/published/workflow?id=579a56c129883cf3, https://usegalaxy.eu/published/workflow?id=5b686090a45f803f, https://usegalaxy.eu/published/workflow?id=5cef0f268d6ff4e0, https://usegalaxy.eu/published/workflow?id=5e4135eeb4972709, https://usegalaxy.eu/published/workflow?id=6173008772bdba09, https://usegalaxy.eu/published/workflow?id=61dcc0998fa4d309, https://usegalaxy.eu/published/workflow?id=629e57958afed44c, https://usegalaxy.eu/published/workflow?id=6588229d0365657f, https://usegalaxy.eu/published/workflow?id=7bcac5c6594e866c, https://usegalaxy.eu/published/workflow?id=7fbde7faec75c781, https://usegalaxy.eu/published/workflow?id=81abf01f79f358fe, https://usegalaxy.eu/published/workflow?id=8c44228d11782e61, https://usegalaxy.eu/published/workflow?id=8faf828e269ca54c, https://usegalaxy.eu/published/workflow?id=99c7ec2841af3a20, https://usegalaxy.eu/published/workflow?id=9d888cef61f5072f, https://usegalaxy.eu/published/workflow?id=9dc6c073f9994265, https://usegalaxy.eu/published/workflow?id=a15dabcadb63b46d, https://usegalaxy.eu/published/workflow?id=a7f2835a74bdf10c, https://usegalaxy.eu/published/workflow?id=b351b297ac7d923f, https://usegalaxy.eu/published/workflow?id=b711696909ee2b59, https://usegalaxy.eu/published/workflow?id=b89ce83b1121c95a, https://usegalaxy.eu/published/workflow?id=bf655ab3dc6fd76a, https://usegalaxy.eu/published/workflow?id=c750484145c9903b, https://usegalaxy.eu/published/workflow?id=c789ab71876c6ead, https://usegalaxy.eu/published/workflow?id=ca6d971fc3a0f417, https://usegalaxy.eu/published/workflow?id=cd25f70f71683ab6, https://usegalaxy.eu/published/workflow?id=cdf677a621166238, https://usegalaxy.eu/published/workflow?id=d20fbb95f15386f5, https://usegalaxy.eu/published/workflow?id=d3a8741131485af2, https://usegalaxy.eu/published/workflow?id=d3dfe7ba11508c72, https://usegalaxy.eu/published/workflow?id=e7e26967cf6cb8d8, https://usegalaxy.eu/published/workflow?id=fb233e418d015649, https://usegalaxy.eu/published/workflow?id=fc0b9efa7d2e61e6, https://usegalaxy.eu/published/workflow?id=fd97c08fdaa6a5eb, https://usegalaxy.org.au/published/workflow?id=252baad4e5ade6bc, https://usegalaxy.org.au/published/workflow?id=9f112e39bd3bd746, https://usegalaxy.org.au/published/workflow?id=bf999071343171b7, https://usegalaxy.org.au/published/workflow?id=c4a303c1571d202e, https://usegalaxy.org.au/published/workflow?id=eda00feabdd21711, https://usegalaxy.org/published/workflow?id=0ab1922bc4ea12b2, https://usegalaxy.org/published/workflow?id=100340be53c2851c, https://usegalaxy.org/published/workflow?id=100d0edb39f83ce7, https://usegalaxy.org/published/workflow?id=1207eb597775b8a0, https://usegalaxy.org/published/workflow?id=1518c8c50747a1c1, https://usegalaxy.org/published/workflow?id=1e350f8ab5978571, https://usegalaxy.org/published/workflow?id=25897c7a15f29c32, https://usegalaxy.org/published/workflow?id=292b9d1975c349f3, https://usegalaxy.org/published/workflow?id=2cfbf7d01161992c, https://usegalaxy.org/published/workflow?id=2d50f038984f2389, https://usegalaxy.org/published/workflow?id=35ec8aeeaa59f6ae, https://usegalaxy.org/published/workflow?id=414fa13b613b33d8, https://usegalaxy.org/published/workflow?id=47e190ec408a71b1, https://usegalaxy.org/published/workflow?id=4ca3b9bb720e9233, https://usegalaxy.org/published/workflow?id=4e0ce0ab562f3912, https://usegalaxy.org/published/workflow?id=56530f4d41413832, https://usegalaxy.org/published/workflow?id=5ad1bcc7e3edd504, https://usegalaxy.org/published/workflow?id=67080f040e855990, https://usegalaxy.org/published/workflow?id=6d971192efa75c8a, https://usegalaxy.org/published/workflow?id=75c2cf36253194c2, https://usegalaxy.org/published/workflow?id=79454a1e3fe171de, https://usegalaxy.org/published/workflow?id=7ca9c5203520ca7e, https://usegalaxy.org/published/workflow?id=7cae620eea6326af, https://usegalaxy.org/published/workflow?id=81c357e76c08ec02, https://usegalaxy.org/published/workflow?id=889aa91c6d3f5654, https://usegalaxy.org/published/workflow?id=88ac2698fa170993, https://usegalaxy.org/published/workflow?id=8bfd40faf59c9857, https://usegalaxy.org/published/workflow?id=92d0308b5190c4be, https://usegalaxy.org/published/workflow?id=95db417c58c586fa, https://usegalaxy.org/published/workflow?id=96b3cad73980c9d0, https://usegalaxy.org/published/workflow?id=97263f3308077ff0, https://usegalaxy.org/published/workflow?id=a1a1c29486d7dd05, https://usegalaxy.org/published/workflow?id=a4a2fa50bb0f095c, https://usegalaxy.org/published/workflow?id=a97f55f0d098b07e, https://usegalaxy.org/published/workflow?id=ab0ffa36361293da, https://usegalaxy.org/published/workflow?id=ab50fc9309706fbc, https://usegalaxy.org/published/workflow?id=b11171cc4ccd84c7, https://usegalaxy.org/published/workflow?id=b62535ba597d3323, https://usegalaxy.org/published/workflow?id=bc461addefad698a, https://usegalaxy.org/published/workflow?id=be4e3c22eef28b7c, https://usegalaxy.org/published/workflow?id=bf1af666d4ea21e4, https://usegalaxy.org/published/workflow?id=c060cfc7463ab118, https://usegalaxy.org/published/workflow?id=c60eca6b739a2f11, https://usegalaxy.org/published/workflow?id=c64719e91e7346a2, https://usegalaxy.org/published/workflow?id=c81ae10f59b3f600, https://usegalaxy.org/published/workflow?id=c8e9cb724c60144c, https://usegalaxy.org/published/workflow?id=cb029d0205155150, https://usegalaxy.org/published/workflow?id=cf21a13f09fcc070, https://usegalaxy.org/published/workflow?id=d5cba8a5ba6880fd, https://usegalaxy.org/published/workflow?id=d7c03007ef8a618e, https://usegalaxy.org/published/workflow?id=d7ea4bdc208ae5e8, https://usegalaxy.org/published/workflow?id=d87b4e14e8e1d39e, https://usegalaxy.org/published/workflow?id=e004b6e4717296cb, https://usegalaxy.org/published/workflow?id=e10859cc568da07c, https://usegalaxy.org/published/workflow?id=e3e646407e3f921d, https://usegalaxy.org/published/workflow?id=e483f5a30a683925, https://usegalaxy.org/published/workflow?id=e586940a7c93ef73, https://usegalaxy.org/published/workflow?id=e67ce2ce587a6f39, https://usegalaxy.org/published/workflow?id=e9e8ac517480c291, https://usegalaxy.org/published/workflow?id=eca0449a7460480c, https://usegalaxy.org/published/workflow?id=ecb279a9114140ab, https://usegalaxy.org/published/workflow?id=f03bf569d526e51a, https://usegalaxy.org/published/workflow?id=f202add6857fabbe, https://usegalaxy.org/published/workflow?id=f806893fbe065406, https://usegalaxy.org/published/workflow?id=f966a8498497ee13, https://usegalaxy.org/published/workflow?id=fa89d2d0edabe803, https://usegalaxy.org/published/workflow?id=fbf75fbb72b488bd, https://usegalaxy.org/published/workflow?id=fcce98489c8ca7a3, https://usegalaxy.org/published/workflow?id=ffd718437128bce2, https://workflowhub.eu/workflows/1078?version=1, https://workflowhub.eu/workflows/1260?version=2, https://workflowhub.eu/workflows/1392?version=1, https://workflowhub.eu/workflows/1486?version=1, https://workflowhub.eu/workflows/1561?version=1, https://workflowhub.eu/workflows/1601?version=1, https://workflowhub.eu/workflows/1708?version=1, https://workflowhub.eu/workflows/1745?version=2 |
data-science/data-manipulation-olympics, galaxy-interface/workflow-editor, introduction/data-manipulation-olympics, single-cell/scatac-batch-correction-snapatac2, transcriptomics/rna-seq-analysis-clustering-viz, variant-analysis/aiv-analysis |
|
show_tail |
Show tail1 |
Select lines from the end of a file. |
2012-12-04 |
|
1.0.0 |
|
|
To update |
Text Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/show_tail |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/show_tail |
|
|
|
|
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
1 |
0 |
0 |
0 |
1 |
1 |
0 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
376 |
615 |
1668 |
2770 |
720 |
1931 |
10725 |
24885 |
73 |
93 |
359 |
487 |
13 |
14 |
22 |
42 |
28184 |
12774 |
2653 |
1182 |
https://usegalaxy.eu/published/workflow?id=035f85c1615e0b7b, https://usegalaxy.org.au/published/workflow?id=a335b9c9103b57ad, https://usegalaxy.org/published/workflow?id=427fce51fd9508eb, https://usegalaxy.org/published/workflow?id=7ca9c5203520ca7e, https://usegalaxy.org/published/workflow?id=e10859cc568da07c, https://usegalaxy.org/published/workflow?id=f806893fbe065406 |
|
|
sicer |
peakcalling_sicer |
Statistical approach for the Identification of ChIP-Enriched Regions |
2014-01-27 |
https://home.gwu.edu/~wpeng/Software.htm |
1.1 |
SICER |
1.1 |
Up-to-date |
ChIP-seq |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/sicer |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
29 |
44 |
224 |
382 |
137 |
1014 |
791 |
9062 |
5 |
7 |
648 |
765 |
2 |
2 |
3 |
3 |
10212 |
1666 |
1067 |
173 |
|
|
|
sklearn |
sklearn_mlxtend_association_rules, sklearn_clf_metrics, sklearn_discriminant_classifier, sklearn_ensemble, sklearn_estimator_attributes, sklearn_feature_selection, sklearn_fitted_model_eval, sklearn_generalized_linear, keras_batch_models, keras_model_builder, keras_model_config, keras_train_and_eval, sklearn_label_encoder, sklearn_lightgbm, ml_visualization_ex, model_prediction, sklearn_model_validation, sklearn_nn_classifier, sklearn_numeric_clustering, sklearn_pairwise_metrics, sklearn_pca, sklearn_build_pipeline, sklearn_data_preprocess, sklearn_regression_metrics, sklearn_sample_generator, sklearn_searchcv, sklearn_model_fit, scipy_sparse, stacking_ensemble_models, sklearn_svm_classifier, sklearn_to_categorical, sklearn_train_test_eval, sklearn_train_test_split |
Machine Learning tool suite from Scikit-learn |
2016-05-02 |
http://scikit-learn.org |
1.0.11.0 |
|
|
To update |
Machine Learning, Statistics |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/sklearn |
https://github.com/bgruening/galaxytools/tree/master/tools/sklearn |
|
|
|
|
30 |
14 |
31 |
16 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
29 |
31 |
27 |
0 |
299 |
338 |
57737 |
120186 |
353 |
358 |
19315 |
21712 |
38 |
38 |
20662 |
20662 |
2 |
2 |
27 |
27 |
162587 |
97741 |
736 |
692 |
https://dev.workflowhub.eu/workflows/1273?version=1, https://dev.workflowhub.eu/workflows/1277?version=2, https://dev.workflowhub.eu/workflows/1280?version=2, https://dev.workflowhub.eu/workflows/1288?version=1, https://dev.workflowhub.eu/workflows/1294?version=1, https://dev.workflowhub.eu/workflows/1298?version=2, https://dev.workflowhub.eu/workflows/1302?version=1, https://dev.workflowhub.eu/workflows/1308?version=1, https://dev.workflowhub.eu/workflows/1313?version=2, https://dev.workflowhub.eu/workflows/1320?version=1, https://dev.workflowhub.eu/workflows/1322?version=2, https://dev.workflowhub.eu/workflows/1328?version=1, https://dev.workflowhub.eu/workflows/1331?version=3, https://usegalaxy.eu/published/workflow?id=011596d04aa140c1, https://usegalaxy.eu/published/workflow?id=0bfb81f2a0202b25, https://usegalaxy.eu/published/workflow?id=130bdb021a3083fb, https://usegalaxy.eu/published/workflow?id=1377a23db45877ae, https://usegalaxy.eu/published/workflow?id=138d4893a1d6228e, https://usegalaxy.eu/published/workflow?id=1526d3918b201c72, https://usegalaxy.eu/published/workflow?id=16a0725cb2063ac1, https://usegalaxy.eu/published/workflow?id=179488ec6d44852c, https://usegalaxy.eu/published/workflow?id=17e99647745eb150, https://usegalaxy.eu/published/workflow?id=19bb27eea9bcdb6f, https://usegalaxy.eu/published/workflow?id=1a38ea9798597219, https://usegalaxy.eu/published/workflow?id=1b8399d5b9fc89a6, https://usegalaxy.eu/published/workflow?id=1d55d5d20c581b16, https://usegalaxy.eu/published/workflow?id=2484b03b39b8ab98, https://usegalaxy.eu/published/workflow?id=262268f6ab4d1f6c, https://usegalaxy.eu/published/workflow?id=2ab7ae9ca0e51392, https://usegalaxy.eu/published/workflow?id=2ac5db57491b97b1, https://usegalaxy.eu/published/workflow?id=33114cbae59a89a1, https://usegalaxy.eu/published/workflow?id=34861c3c63048d6b, https://usegalaxy.eu/published/workflow?id=3aeeb7a017143bb4, https://usegalaxy.eu/published/workflow?id=3ffe3b2007167657, https://usegalaxy.eu/published/workflow?id=4384aa586c0e1300, https://usegalaxy.eu/published/workflow?id=443c014a103626bd, https://usegalaxy.eu/published/workflow?id=463a22701cf2410d, https://usegalaxy.eu/published/workflow?id=4b383d13ff512687, https://usegalaxy.eu/published/workflow?id=518469bc5efb8728, https://usegalaxy.eu/published/workflow?id=5225633f2e94fc7e, https://usegalaxy.eu/published/workflow?id=540d4c57cfe2a40f, https://usegalaxy.eu/published/workflow?id=57564e3962edb0d5, https://usegalaxy.eu/published/workflow?id=5900578d64e01001, https://usegalaxy.eu/published/workflow?id=5e1f033efa5f7d7d, https://usegalaxy.eu/published/workflow?id=6081f684d8d72e91, https://usegalaxy.eu/published/workflow?id=6842576edd59b01a, https://usegalaxy.eu/published/workflow?id=6c29cb7393b64a98, https://usegalaxy.eu/published/workflow?id=6ce19741d208f0db, https://usegalaxy.eu/published/workflow?id=6df97546214afbe6, https://usegalaxy.eu/published/workflow?id=6f66e4b653082fa5, https://usegalaxy.eu/published/workflow?id=71a7113386b2cdc1, https://usegalaxy.eu/published/workflow?id=732fa536cdc70c96, https://usegalaxy.eu/published/workflow?id=77fa6e5a8fa3f911, https://usegalaxy.eu/published/workflow?id=788d5aff5b560438, https://usegalaxy.eu/published/workflow?id=7c10b78c4367ed61, https://usegalaxy.eu/published/workflow?id=7d22e5259212aaf8, https://usegalaxy.eu/published/workflow?id=7d7bfc7420479470, https://usegalaxy.eu/published/workflow?id=7e90fa21a018c0bb, https://usegalaxy.eu/published/workflow?id=8192e947a14d9cb5, https://usegalaxy.eu/published/workflow?id=81f24fe866a8a12c, https://usegalaxy.eu/published/workflow?id=81f62d8f35462c9a, https://usegalaxy.eu/published/workflow?id=83002fdc85a7911e, https://usegalaxy.eu/published/workflow?id=83fe480cdbb70099, https://usegalaxy.eu/published/workflow?id=848389c45cebe34f, https://usegalaxy.eu/published/workflow?id=8b5e642274f91390, https://usegalaxy.eu/published/workflow?id=8fc7eb7733071aba, https://usegalaxy.eu/published/workflow?id=925c89b318763574, https://usegalaxy.eu/published/workflow?id=9791e8aae12d6e63, https://usegalaxy.eu/published/workflow?id=9e497c5c9e64d9b3, https://usegalaxy.eu/published/workflow?id=a08f980909ddcff2, https://usegalaxy.eu/published/workflow?id=a3c966d53c4ba7de, https://usegalaxy.eu/published/workflow?id=a669986e1a5cee31, https://usegalaxy.eu/published/workflow?id=a824fb7e65a1a939, https://usegalaxy.eu/published/workflow?id=ab28a6da3e34094a, https://usegalaxy.eu/published/workflow?id=abd283a751a19aa5, https://usegalaxy.eu/published/workflow?id=ae380023cd06f640, https://usegalaxy.eu/published/workflow?id=b47e8dde39c6d8b7, https://usegalaxy.eu/published/workflow?id=b4bf9e3309d53af3, https://usegalaxy.eu/published/workflow?id=bb64be0ff8a5e92e, https://usegalaxy.eu/published/workflow?id=bc720034237e5b2e, https://usegalaxy.eu/published/workflow?id=c15303fcc0b53df6, https://usegalaxy.eu/published/workflow?id=c68cd416d24af9f2, https://usegalaxy.eu/published/workflow?id=c76b69a5560142de, https://usegalaxy.eu/published/workflow?id=cb3d961914ede12e, https://usegalaxy.eu/published/workflow?id=ccda8222900499a7, https://usegalaxy.eu/published/workflow?id=cda516957bcfcd9c, https://usegalaxy.eu/published/workflow?id=d63c382e98be752b, https://usegalaxy.eu/published/workflow?id=d6eb0562d0036940, https://usegalaxy.eu/published/workflow?id=db344f239d0901bd, https://usegalaxy.eu/published/workflow?id=df3732dcb6c1bcb7, https://usegalaxy.eu/published/workflow?id=e2560dd1b4aca511, https://usegalaxy.eu/published/workflow?id=e5b58ab054d7d11b, https://usegalaxy.eu/published/workflow?id=e6432be54d625d1c, https://usegalaxy.eu/published/workflow?id=e64680b4aa5541d6, https://usegalaxy.eu/published/workflow?id=e795e7f59b4de5e6, https://usegalaxy.eu/published/workflow?id=eefefcfe80e6eee0, https://usegalaxy.eu/published/workflow?id=f4a55ef0d4c2cd97, https://usegalaxy.eu/published/workflow?id=f698bed6a0867f5f, https://usegalaxy.eu/published/workflow?id=fa83e26e05418370, https://usegalaxy.eu/published/workflow?id=fa9d6ca3fe1266c4, https://usegalaxy.eu/published/workflow?id=fdbf1a1a584a429c, https://usegalaxy.org.au/published/workflow?id=350433eefb835f19, https://usegalaxy.org.au/published/workflow?id=517f947adc81a16a, https://usegalaxy.org.au/published/workflow?id=65a8ac91d6ded9a2, https://usegalaxy.org.au/published/workflow?id=697945d5f9edbf39, https://usegalaxy.org.au/published/workflow?id=92b5a29a956a3afc, https://usegalaxy.org.au/published/workflow?id=b0ee0c0a6a37f5ef, https://usegalaxy.org.au/published/workflow?id=bfd7ed2abc95b53d, https://usegalaxy.org.au/published/workflow?id=cebab4f1a2405a89, https://usegalaxy.org.au/published/workflow?id=d858cfd9303bb99a, https://usegalaxy.org/published/workflow?id=0cf9868ebc9ec1dc, https://usegalaxy.org/published/workflow?id=728ce1ce56c4d3da, https://usegalaxy.org/published/workflow?id=8bab8e2b5d47f2f0, https://usegalaxy.org/published/workflow?id=fcfcc7ca9ab07bce, https://workflowhub.eu/workflows/1583?version=1, https://workflowhub.eu/workflows/1588?version=1, https://workflowhub.eu/workflows/1592?version=1, https://workflowhub.eu/workflows/1596?version=1, https://workflowhub.eu/workflows/1609?version=1, https://workflowhub.eu/workflows/1618?version=1, https://workflowhub.eu/workflows/1633?version=1, https://workflowhub.eu/workflows/1637?version=1, https://workflowhub.eu/workflows/1643?version=1, https://workflowhub.eu/workflows/1720?version=1, https://workflowhub.eu/workflows/1721?version=1, https://workflowhub.eu/workflows/1722?version=1, https://workflowhub.eu/workflows/1724?version=1, https://workflowhub.eu/workflows/659?version=1 |
statistics/CNN, statistics/FNN, statistics/RNN, statistics/age-prediction-with-ml, statistics/classification_machinelearning, statistics/classification_regression, statistics/clustering_machinelearning, statistics/fruit_360, statistics/intro_deep_learning, statistics/machinelearning, statistics/regression_machinelearning |
|
snpfreq |
hgv_snpFreq |
snpFreq significant SNPs in case-control data |
2014-07-28 |
|
1.0.1 |
R |
|
To update |
Variant Analysis, Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/hgv/snpfreq |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/hgv/snpfreq |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
10 |
12 |
28 |
44 |
67 |
185 |
286 |
657 |
13 |
23 |
225 |
279 |
0 |
0 |
0 |
0 |
980 |
539 |
220 |
90 |
|
|
|
sortmerna |
bg_sortmerna |
SortMeRNA is a software designed to rapidly filter ribosomal RNA fragments from metatransriptomic data produced by next-generation sequencers. |
2015-02-28 |
http://bioinfo.lifl.fr/RNA/sortmerna/ |
4.3.6 |
sortmerna |
4.3.7 |
To update |
RNA |
Sequence similarity search, Sequence comparison, Sequence alignment analysis |
Sequence similarity search, Sequence alignment analysis |
Metatranscriptomics, Metagenomics |
Metatranscriptomics, Metagenomics |
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna |
sortmerna |
SortMeRNA |
Sequence analysis tool for filtering, mapping and OTU-picking NGS reads. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1115 |
1215 |
21173 |
22817 |
437 |
437 |
5232 |
5232 |
198 |
198 |
3453 |
3453 |
96 |
96 |
561 |
564 |
32066 |
30419 |
1946 |
1846 |
https://dev.workflowhub.eu/workflows/1092?version=1, https://usegalaxy.eu/published/workflow?id=096b75501c8e0888, https://usegalaxy.eu/published/workflow?id=2cf09adb1ed6c3ec, https://usegalaxy.eu/published/workflow?id=385cc7df70d7916b, https://usegalaxy.eu/published/workflow?id=401746888e8b3aa8, https://usegalaxy.eu/published/workflow?id=4d32b1b3ac0a7161, https://usegalaxy.eu/published/workflow?id=5f0faac42b0a5062, https://usegalaxy.eu/published/workflow?id=72e3e5fdc766e24a, https://usegalaxy.eu/published/workflow?id=7ab70660e6235cf0, https://usegalaxy.eu/published/workflow?id=87cc0cd143a12c41, https://usegalaxy.eu/published/workflow?id=9382f9bbbdddb5ad, https://usegalaxy.eu/published/workflow?id=9472be79da012999, https://usegalaxy.eu/published/workflow?id=994e5ff1df7d6c9e, https://usegalaxy.eu/published/workflow?id=9cbba5de2cbeeb0f, https://usegalaxy.eu/published/workflow?id=a8417c63e9e22afb, https://usegalaxy.eu/published/workflow?id=a8f829deb69b30ab, https://usegalaxy.eu/published/workflow?id=c3aa516e78ca4191, https://usegalaxy.eu/published/workflow?id=d05c6f0f3205fbd2, https://usegalaxy.eu/published/workflow?id=dfc2c53ac3103eff, https://usegalaxy.eu/published/workflow?id=e423c80058601e78, https://usegalaxy.eu/published/workflow?id=f6e8a63283262518, https://usegalaxy.eu/published/workflow?id=fd90652d475ed739, https://usegalaxy.eu/published/workflow?id=fdca6c9d394986bf, https://usegalaxy.fr/published/workflow?id=c4f6062e51d0f45e, https://usegalaxy.fr/published/workflow?id=e6991d64e851b09e, https://usegalaxy.org.au/published/workflow?id=408a31694e9c85e6, https://workflowhub.eu/workflows/1444?version=2, https://workflowhub.eu/workflows/1466?version=2 |
microbiome/metatranscriptomics, microbiome/metatranscriptomics-short |
|
split_file_on_column |
tp_split_on_column |
Split a file on a specific column. |
2015-02-28 |
|
0.6 |
gawk |
|
To update |
Text Manipulation |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_on_column |
https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_on_column |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
463 |
517 |
6473 |
6789 |
349 |
349 |
2601 |
2601 |
10 |
10 |
143 |
143 |
25 |
25 |
36 |
36 |
9569 |
9253 |
901 |
847 |
https://dev.workflowhub.eu/workflows/1077?version=2, https://dev.workflowhub.eu/workflows/1090?version=2, https://dev.workflowhub.eu/workflows/1173?version=2, https://dev.workflowhub.eu/workflows/1206?version=1, https://dev.workflowhub.eu/workflows/1365?version=1, https://usegalaxy.eu/published/workflow?id=152223c8aed27357, https://usegalaxy.eu/published/workflow?id=1749616cec69fb00, https://usegalaxy.eu/published/workflow?id=1f3f6757de60d3cf, https://usegalaxy.eu/published/workflow?id=376119528377a3ae, https://usegalaxy.eu/published/workflow?id=39dd6365ff076dc4, https://usegalaxy.eu/published/workflow?id=5f053303601cc630, https://usegalaxy.eu/published/workflow?id=739214a6dfa194e1, https://usegalaxy.eu/published/workflow?id=7c80cd57b2de54d4, https://usegalaxy.eu/published/workflow?id=86900be4282d4b1d, https://usegalaxy.eu/published/workflow?id=933ab5e7fe13a8e0, https://usegalaxy.eu/published/workflow?id=a2c46deea34d9d80, https://usegalaxy.eu/published/workflow?id=c8bc4af6dd3b5d02, https://usegalaxy.eu/published/workflow?id=e87e726b57f1a875, https://usegalaxy.eu/published/workflow?id=f6a763951d815944, https://usegalaxy.org.au/published/workflow?id=7a0b3968968c5994, https://usegalaxy.org.au/published/workflow?id=b60922a253df6654, https://usegalaxy.org.au/published/workflow?id=eda40b58616a0fe4, https://usegalaxy.org/published/workflow?id=2967ef82911f2cca, https://usegalaxy.org/published/workflow?id=2d3063882d8239ff, https://usegalaxy.org/published/workflow?id=3ef08553982f6ffc, https://usegalaxy.org/published/workflow?id=b0f85c802c1ea7f8, https://usegalaxy.org/published/workflow?id=fbf75fbb72b488bd, https://workflowhub.eu/workflows/1060?version=1, https://workflowhub.eu/workflows/1189?version=2, https://workflowhub.eu/workflows/1486?version=1, https://workflowhub.eu/workflows/1487?version=2, https://workflowhub.eu/workflows/1515?version=1, https://workflowhub.eu/workflows/1517?version=1, https://workflowhub.eu/workflows/1518?version=1, https://workflowhub.eu/workflows/1601?version=1 |
data-science/data-manipulation-olympics, genome-annotation/gene-centric, imaging/parameter-tuning, introduction/data-manipulation-olympics, microbiome/pathogen-detection-from-nanopore-foodborne-data, single-cell/GO-enrichment |
|
split_file_to_collection |
split_file_to_collection |
Split tabular, MGF, FASTA, or FASTQ files to a dataset collection. |
2018-07-10 |
https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection |
0.5.2 |
python |
|
To update |
Text Manipulation |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection |
https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1096 |
1127 |
18554 |
19049 |
757 |
757 |
10070 |
10070 |
167 |
167 |
4645 |
4645 |
32 |
32 |
685 |
685 |
34449 |
33954 |
2083 |
2052 |
https://dev.workflowhub.eu/workflows/1079?version=2, https://dev.workflowhub.eu/workflows/1082?version=2, https://dev.workflowhub.eu/workflows/1091?version=1, https://dev.workflowhub.eu/workflows/1367?version=1, https://dev.workflowhub.eu/workflows/1395?version=1, https://dev.workflowhub.eu/workflows/193?version=2, https://dev.workflowhub.eu/workflows/199?version=2, https://dev.workflowhub.eu/workflows/548?version=1, https://usegalaxy.eu/published/workflow?id=020f877513f2d0d1, https://usegalaxy.eu/published/workflow?id=036990ecf300a99f, https://usegalaxy.eu/published/workflow?id=04df470a38b10e94, https://usegalaxy.eu/published/workflow?id=05bd1d9c61df5d16, https://usegalaxy.eu/published/workflow?id=079e2a968d8e6176, https://usegalaxy.eu/published/workflow?id=07e1478df88a17cc, https://usegalaxy.eu/published/workflow?id=08e50a41a8571c15, https://usegalaxy.eu/published/workflow?id=0ae360bfbb3b2494, https://usegalaxy.eu/published/workflow?id=0c94260298199d8b, https://usegalaxy.eu/published/workflow?id=117177b0c231dc55, https://usegalaxy.eu/published/workflow?id=133b299125ff9905, https://usegalaxy.eu/published/workflow?id=18af9bbae833f8fe, https://usegalaxy.eu/published/workflow?id=1b10ece62e745125, https://usegalaxy.eu/published/workflow?id=1c267e93aa8015e6, https://usegalaxy.eu/published/workflow?id=1da86d74f8535f4e, https://usegalaxy.eu/published/workflow?id=1f88311a8e365c17, https://usegalaxy.eu/published/workflow?id=20592f292c205954, https://usegalaxy.eu/published/workflow?id=21aba070546c3c51, https://usegalaxy.eu/published/workflow?id=220961d803697f54, https://usegalaxy.eu/published/workflow?id=2424282f793f0f1b, https://usegalaxy.eu/published/workflow?id=27fca972f1d1a312, https://usegalaxy.eu/published/workflow?id=2c3d05023c02113e, https://usegalaxy.eu/published/workflow?id=2d509fad86eb97fb, https://usegalaxy.eu/published/workflow?id=2dce5e80bae66d27, https://usegalaxy.eu/published/workflow?id=2f094f5e1f391529, https://usegalaxy.eu/published/workflow?id=373d861ef4b0081a, https://usegalaxy.eu/published/workflow?id=37b04b02ec08e84f, https://usegalaxy.eu/published/workflow?id=3c6ff60d1d3ceb3d, https://usegalaxy.eu/published/workflow?id=43098b8afe78b071, https://usegalaxy.eu/published/workflow?id=4e9a2e12467bc02e, https://usegalaxy.eu/published/workflow?id=4fe19f3eac3b28ab, https://usegalaxy.eu/published/workflow?id=526a93b9f6dfe5ce, https://usegalaxy.eu/published/workflow?id=53cdd6bf98e4c77d, https://usegalaxy.eu/published/workflow?id=585c21b7b1d864fc, https://usegalaxy.eu/published/workflow?id=5cc732a6b4338bf5, https://usegalaxy.eu/published/workflow?id=5ed38d8114bcd6f7, https://usegalaxy.eu/published/workflow?id=6478043c474ac82e, https://usegalaxy.eu/published/workflow?id=6aaf2b342d57f78d, https://usegalaxy.eu/published/workflow?id=6b02df749d20cae1, https://usegalaxy.eu/published/workflow?id=6e1fe7372e93fae0, https://usegalaxy.eu/published/workflow?id=6ed1016dfdf9f928, https://usegalaxy.eu/published/workflow?id=6ff3eb92d75626f6, https://usegalaxy.eu/published/workflow?id=70ec8b1719e25982, https://usegalaxy.eu/published/workflow?id=746314ef8ceb7509, https://usegalaxy.eu/published/workflow?id=77e5bbd317750915, https://usegalaxy.eu/published/workflow?id=7b78e5630415f527, https://usegalaxy.eu/published/workflow?id=7bda7ae31c427347, https://usegalaxy.eu/published/workflow?id=7cbda24fd0767899, https://usegalaxy.eu/published/workflow?id=7dd7908f4c8d722a, https://usegalaxy.eu/published/workflow?id=7ea91d562a02eb2f, https://usegalaxy.eu/published/workflow?id=7f76e43f19b27b22, https://usegalaxy.eu/published/workflow?id=8156471dd0223d67, https://usegalaxy.eu/published/workflow?id=82879b0eb4a71ad0, https://usegalaxy.eu/published/workflow?id=83c5bf0208f4d217, https://usegalaxy.eu/published/workflow?id=841367f185aaade4, https://usegalaxy.eu/published/workflow?id=843c10c447496280, https://usegalaxy.eu/published/workflow?id=87ec5a48ebc848b5, https://usegalaxy.eu/published/workflow?id=88f5cef7e4146520, https://usegalaxy.eu/published/workflow?id=8a1ddbae2d1c3f12, https://usegalaxy.eu/published/workflow?id=8c6371b360217f72, https://usegalaxy.eu/published/workflow?id=90643b0ad5e61ba5, https://usegalaxy.eu/published/workflow?id=930a9757252d3ca6, https://usegalaxy.eu/published/workflow?id=9eb29cc96d8d75c2, https://usegalaxy.eu/published/workflow?id=a31100610fba17a1, https://usegalaxy.eu/published/workflow?id=a639ea0419de1078, https://usegalaxy.eu/published/workflow?id=a70583aa531b7115, https://usegalaxy.eu/published/workflow?id=aa5b077da1d36b23, https://usegalaxy.eu/published/workflow?id=abd1cb3457338eb5, https://usegalaxy.eu/published/workflow?id=ad2c1d14c0d2dd2f, https://usegalaxy.eu/published/workflow?id=ada52ba09b462567, https://usegalaxy.eu/published/workflow?id=af30010868c97316, https://usegalaxy.eu/published/workflow?id=b0377f05f97b18b1, https://usegalaxy.eu/published/workflow?id=b57c3522bdd7c2d5, https://usegalaxy.eu/published/workflow?id=b6457cb04bf31613, https://usegalaxy.eu/published/workflow?id=b77e3b08092fa73e, https://usegalaxy.eu/published/workflow?id=bb1680ec6dde6004, https://usegalaxy.eu/published/workflow?id=c3a11e1ac1aa8383, https://usegalaxy.eu/published/workflow?id=c7b9fb6872444809, https://usegalaxy.eu/published/workflow?id=c9f83ce86d407902, https://usegalaxy.eu/published/workflow?id=ce1712139b4a4273, https://usegalaxy.eu/published/workflow?id=ce5c9287a67e6085, https://usegalaxy.eu/published/workflow?id=d1357759d0962144, https://usegalaxy.eu/published/workflow?id=d1b3b62e7f91e217, https://usegalaxy.eu/published/workflow?id=d2a9d4eb5b3c72a2, https://usegalaxy.eu/published/workflow?id=e04be1ab5a16eb9f, https://usegalaxy.eu/published/workflow?id=e271d95a671182ec, https://usegalaxy.eu/published/workflow?id=e3b0b521ee8f2aef, https://usegalaxy.eu/published/workflow?id=e66502f92a7d432b, https://usegalaxy.eu/published/workflow?id=e8a8c0b59ba9d593, https://usegalaxy.eu/published/workflow?id=ea3b120f105434ec, https://usegalaxy.eu/published/workflow?id=eb03839cc36048f5, https://usegalaxy.eu/published/workflow?id=ebb51874b533738e, https://usegalaxy.eu/published/workflow?id=f9b705e53b6d6539, https://usegalaxy.eu/published/workflow?id=ff2fd4a4bb27d859, https://usegalaxy.fr/published/workflow?id=798c8ff19825ab2c, https://usegalaxy.fr/published/workflow?id=b168a179d1b456cb, https://usegalaxy.org.au/published/workflow?id=04c9266c6a863fab, https://usegalaxy.org.au/published/workflow?id=084bb76cf47d7060, https://usegalaxy.org.au/published/workflow?id=0b0957d7cbab16c0, https://usegalaxy.org.au/published/workflow?id=1764bb1f506212e8, https://usegalaxy.org.au/published/workflow?id=1782d699b0166725, https://usegalaxy.org.au/published/workflow?id=1aca9ce61d2eb5fd, https://usegalaxy.org.au/published/workflow?id=1cf77dc01e5f25d3, https://usegalaxy.org.au/published/workflow?id=367116498fc5d46b, https://usegalaxy.org.au/published/workflow?id=47672dbb17beeac4, https://usegalaxy.org.au/published/workflow?id=479c6b0a96ea1610, https://usegalaxy.org.au/published/workflow?id=5693bbcbe864d268, https://usegalaxy.org.au/published/workflow?id=5a975438c8752269, https://usegalaxy.org.au/published/workflow?id=5fe66b29dcfb22ab, https://usegalaxy.org.au/published/workflow?id=6450b11440eb7fe8, https://usegalaxy.org.au/published/workflow?id=6b1b0a945d367b4c, https://usegalaxy.org.au/published/workflow?id=7c3b103c8ec8aecf, https://usegalaxy.org.au/published/workflow?id=7cc2b5010c56f117, https://usegalaxy.org.au/published/workflow?id=800d28ec61b15244, https://usegalaxy.org.au/published/workflow?id=803ef29108e36e58, https://usegalaxy.org.au/published/workflow?id=85e97951bee557f4, https://usegalaxy.org.au/published/workflow?id=8e2b94c6fbf44368, https://usegalaxy.org.au/published/workflow?id=902e270d424f0e8c, https://usegalaxy.org.au/published/workflow?id=97016c7546583e3d, https://usegalaxy.org.au/published/workflow?id=989eb73372135796, https://usegalaxy.org.au/published/workflow?id=9d9abc304f3054e3, https://usegalaxy.org.au/published/workflow?id=a1ccfa620265e45c, https://usegalaxy.org.au/published/workflow?id=a53330cff71725b7, https://usegalaxy.org.au/published/workflow?id=a8d58b9f85e174c0, https://usegalaxy.org.au/published/workflow?id=b432a1312859edd2, https://usegalaxy.org.au/published/workflow?id=b601f48ecec15bf4, https://usegalaxy.org.au/published/workflow?id=b920b02a23f94d11, https://usegalaxy.org.au/published/workflow?id=b9e82e3fae56d8b4, https://usegalaxy.org.au/published/workflow?id=c4d23297f6fbf5f3, https://usegalaxy.org.au/published/workflow?id=d023add11a4f4b09, https://usegalaxy.org.au/published/workflow?id=d0d6743450e5060d, https://usegalaxy.org.au/published/workflow?id=d69016524c11be28, https://usegalaxy.org.au/published/workflow?id=e9bf69388d47a0e6, https://usegalaxy.org.au/published/workflow?id=ef8c22c2525063a2, https://usegalaxy.org.au/published/workflow?id=fbc732db2a2821b0, https://usegalaxy.org.au/published/workflow?id=feb7258263783c97, https://usegalaxy.org/published/workflow?id=01193a261e246899, https://usegalaxy.org/published/workflow?id=019be65613876562, https://usegalaxy.org/published/workflow?id=07e761b2501971c6, https://usegalaxy.org/published/workflow?id=0b62cfa1ff1f0a44, https://usegalaxy.org/published/workflow?id=0b85fb10ed25d34e, https://usegalaxy.org/published/workflow?id=0dc0773c9af30002, https://usegalaxy.org/published/workflow?id=11f28984c6b94cdc, https://usegalaxy.org/published/workflow?id=13a3954b8894e1b1, https://usegalaxy.org/published/workflow?id=16910402667eec78, https://usegalaxy.org/published/workflow?id=170287dcfb9de475, https://usegalaxy.org/published/workflow?id=183254b3565bcb04, https://usegalaxy.org/published/workflow?id=195a608c481040de, https://usegalaxy.org/published/workflow?id=19ce6cf93298e268, https://usegalaxy.org/published/workflow?id=1f98df1adba71b98, https://usegalaxy.org/published/workflow?id=226b506d1fc30e96, https://usegalaxy.org/published/workflow?id=23be272392a4b83b, https://usegalaxy.org/published/workflow?id=278c8f376de66bd7, https://usegalaxy.org/published/workflow?id=287a531193a0bf9f, https://usegalaxy.org/published/workflow?id=28c7e8269d478244, https://usegalaxy.org/published/workflow?id=2a4823c060dd216e, https://usegalaxy.org/published/workflow?id=2a659b0f87cf7453, https://usegalaxy.org/published/workflow?id=2b09f3c9465ee054, https://usegalaxy.org/published/workflow?id=2b6245843e632c05, https://usegalaxy.org/published/workflow?id=2b820beaeb49dd64, https://usegalaxy.org/published/workflow?id=2d55f489c26f6e97, https://usegalaxy.org/published/workflow?id=2dceaa255cc8cf83, https://usegalaxy.org/published/workflow?id=305eafecadfa8815, https://usegalaxy.org/published/workflow?id=31186e478383465b, https://usegalaxy.org/published/workflow?id=31ed5a2bcc8da51a, https://usegalaxy.org/published/workflow?id=3511da8b41b1fb5d, https://usegalaxy.org/published/workflow?id=357225c624e796b5, https://usegalaxy.org/published/workflow?id=375f5142c207a768, https://usegalaxy.org/published/workflow?id=38b0d05e36ca68dc, https://usegalaxy.org/published/workflow?id=3c1e2bbb1a77cc30, https://usegalaxy.org/published/workflow?id=3eb062db34c0c35b, https://usegalaxy.org/published/workflow?id=3f252e077e0bcce5, https://usegalaxy.org/published/workflow?id=405dc14eb02ff234, https://usegalaxy.org/published/workflow?id=412da1489d6aed45, https://usegalaxy.org/published/workflow?id=442a2868873e7f77, https://usegalaxy.org/published/workflow?id=46207bf9ce5ee26a, https://usegalaxy.org/published/workflow?id=463ffaa860195d64, https://usegalaxy.org/published/workflow?id=4680511d4daad5d7, https://usegalaxy.org/published/workflow?id=4ba61941f31f0215, https://usegalaxy.org/published/workflow?id=4bcb4b668b9cee9e, https://usegalaxy.org/published/workflow?id=4c996921fb6a2334, https://usegalaxy.org/published/workflow?id=4dfe253e26b29052, https://usegalaxy.org/published/workflow?id=4f20cfc9589d7b2d, https://usegalaxy.org/published/workflow?id=5355f0c34d5a9f40, https://usegalaxy.org/published/workflow?id=5361db01e3b6cc0c, https://usegalaxy.org/published/workflow?id=56427a9b9c3848bf, https://usegalaxy.org/published/workflow?id=572224cc3986f8df, https://usegalaxy.org/published/workflow?id=5a0eb1b27dad3cd6, https://usegalaxy.org/published/workflow?id=5e565547c5871076, https://usegalaxy.org/published/workflow?id=61a379a8d150bfca, https://usegalaxy.org/published/workflow?id=634bbef1f67a0e30, https://usegalaxy.org/published/workflow?id=696b2efc589afd6f, https://usegalaxy.org/published/workflow?id=6c2bb2209aad5e44, https://usegalaxy.org/published/workflow?id=712234790045e58c, https://usegalaxy.org/published/workflow?id=7185085cbe953cd9, https://usegalaxy.org/published/workflow?id=7454015793c4adc9, https://usegalaxy.org/published/workflow?id=750d086417b8a20e, https://usegalaxy.org/published/workflow?id=78249d353038002b, https://usegalaxy.org/published/workflow?id=7a4d834e794407d9, https://usegalaxy.org/published/workflow?id=7af656b8ea5e7e2e, https://usegalaxy.org/published/workflow?id=7b6ed1b7bdbe1e7f, https://usegalaxy.org/published/workflow?id=7e275e09c2bb81b9, https://usegalaxy.org/published/workflow?id=7e56bee496344ddc, https://usegalaxy.org/published/workflow?id=80785485eb32e062, https://usegalaxy.org/published/workflow?id=85e2a1d6b1d4e3d7, https://usegalaxy.org/published/workflow?id=870f4988a5cc815e, https://usegalaxy.org/published/workflow?id=8a01c78688beae1d, https://usegalaxy.org/published/workflow?id=8a15bda6ce7a63ec, https://usegalaxy.org/published/workflow?id=8b041ba8eb4cacb1, https://usegalaxy.org/published/workflow?id=8b4945a0fb49e03e, https://usegalaxy.org/published/workflow?id=8db9ccf14567d9ba, https://usegalaxy.org/published/workflow?id=8e1c6ad6ff623015, https://usegalaxy.org/published/workflow?id=918863756ce93725, https://usegalaxy.org/published/workflow?id=9192807702bc3de2, https://usegalaxy.org/published/workflow?id=91ed290805f590de, https://usegalaxy.org/published/workflow?id=931dd3e6b1fae4f5, https://usegalaxy.org/published/workflow?id=9b384b774485b2f2, https://usegalaxy.org/published/workflow?id=9e1762e46ddf9a85, https://usegalaxy.org/published/workflow?id=9f38a8d3e373d05c, https://usegalaxy.org/published/workflow?id=a04c25ac243002ad, https://usegalaxy.org/published/workflow?id=a124d41da896779c, https://usegalaxy.org/published/workflow?id=a1cb49d176baeae7, https://usegalaxy.org/published/workflow?id=a3c2ff6728c8c7a8, https://usegalaxy.org/published/workflow?id=a3ff7dbfadbd96e2, https://usegalaxy.org/published/workflow?id=a46ad0b9240d1a13, https://usegalaxy.org/published/workflow?id=a5bdab0b219b3797, https://usegalaxy.org/published/workflow?id=a81944fafdc194aa, https://usegalaxy.org/published/workflow?id=a97c694b3298ae44, https://usegalaxy.org/published/workflow?id=ab490af27c9ccc80, https://usegalaxy.org/published/workflow?id=ac3755c1ae5f7f16, https://usegalaxy.org/published/workflow?id=acb49fe14ae16fe9, https://usegalaxy.org/published/workflow?id=ad19db6504b6dc33, https://usegalaxy.org/published/workflow?id=af85a2ae187409f4, https://usegalaxy.org/published/workflow?id=affdc1bf42475cc9, https://usegalaxy.org/published/workflow?id=b2430fa67f6914fc, https://usegalaxy.org/published/workflow?id=b4f7109ac83ce199, https://usegalaxy.org/published/workflow?id=b7c67632a6eabda5, https://usegalaxy.org/published/workflow?id=b8ed069eea7879e7, https://usegalaxy.org/published/workflow?id=bcd23aee681e5af5, https://usegalaxy.org/published/workflow?id=c027d5f90a9f0c74, https://usegalaxy.org/published/workflow?id=c07476a937b4e52e, https://usegalaxy.org/published/workflow?id=c41272bceb3292d8, https://usegalaxy.org/published/workflow?id=c75acc1ab44c121f, https://usegalaxy.org/published/workflow?id=c7693951c6215e19, https://usegalaxy.org/published/workflow?id=c82a73c85add7ec4, https://usegalaxy.org/published/workflow?id=caa7b09601ea6cfe, https://usegalaxy.org/published/workflow?id=caee1b54c00784b4, https://usegalaxy.org/published/workflow?id=cce88bc57b180d09, https://usegalaxy.org/published/workflow?id=cdf5dffbed938d49, https://usegalaxy.org/published/workflow?id=d02b4d7483936b73, https://usegalaxy.org/published/workflow?id=d1ca40dd7e591025, https://usegalaxy.org/published/workflow?id=d2dec03b33af1b2f, https://usegalaxy.org/published/workflow?id=d341660f3d1ce8bf, https://usegalaxy.org/published/workflow?id=d485bf21a5069fe4, https://usegalaxy.org/published/workflow?id=d793885f1a223d9c, https://usegalaxy.org/published/workflow?id=d830ca239e385b9d, https://usegalaxy.org/published/workflow?id=d96bb2d69eb13dcf, https://usegalaxy.org/published/workflow?id=dcbc71347300822d, https://usegalaxy.org/published/workflow?id=deea71ccac30c7ea, https://usegalaxy.org/published/workflow?id=e1cc0886cd27b92e, https://usegalaxy.org/published/workflow?id=e31abcc04c5c69bc, https://usegalaxy.org/published/workflow?id=e325b97b81b10edb, https://usegalaxy.org/published/workflow?id=e53b695ff681b675, https://usegalaxy.org/published/workflow?id=e817b5b275b4952f, https://usegalaxy.org/published/workflow?id=eab7347464872b4c, https://usegalaxy.org/published/workflow?id=ebe7f93204402a5a, https://usegalaxy.org/published/workflow?id=ed0a5c1bbd978c34, https://usegalaxy.org/published/workflow?id=eed40b0bd0a233cd, https://usegalaxy.org/published/workflow?id=ef17168194722023, https://usegalaxy.org/published/workflow?id=ef8d3e19e09b9246, https://usegalaxy.org/published/workflow?id=f2f633d2b02b6050, https://usegalaxy.org/published/workflow?id=f571e946f08c545a, https://usegalaxy.org/published/workflow?id=f58c90061c31bd48, https://usegalaxy.org/published/workflow?id=f7d1c6be4e4c3357, https://usegalaxy.org/published/workflow?id=f85999e42bfef5b9, https://usegalaxy.org/published/workflow?id=fb8b997f516288e1, https://usegalaxy.org/published/workflow?id=ff3ade25b35f4893, https://workflowhub.eu/workflows/1062?version=1, https://workflowhub.eu/workflows/109?version=9, https://workflowhub.eu/workflows/1114?version=1, https://workflowhub.eu/workflows/1207?version=2, https://workflowhub.eu/workflows/1258?version=1, https://workflowhub.eu/workflows/1259?version=1, https://workflowhub.eu/workflows/1353?version=2, https://workflowhub.eu/workflows/137?version=9, https://workflowhub.eu/workflows/1495?version=1, https://workflowhub.eu/workflows/1597?version=1, https://workflowhub.eu/workflows/1658?version=1, https://workflowhub.eu/workflows/1691?version=1, https://workflowhub.eu/workflows/246?version=4, https://workflowhub.eu/workflows/248?version=4, https://workflowhub.eu/workflows/249?version=4, https://workflowhub.eu/workflows/354?version=1, https://workflowhub.eu/workflows/373?version=2, https://workflowhub.eu/workflows/374?version=1, https://workflowhub.eu/workflows/375?version=1, https://workflowhub.eu/workflows/439?version=3, https://workflowhub.eu/workflows/607?version=1, https://workflowhub.eu/workflows/622?version=11, https://workflowhub.eu/workflows/628?version=1, https://workflowhub.eu/workflows/629?version=1 |
computational-chemistry/covid19-docking, computational-chemistry/zauberkugel, metabolomics/qcxms-predictions, microbiome/pathogen-detection-from-nanopore-foodborne-data, sequence-analysis/viral_primer_design |
|
split_paired_reads |
split_paired_reads |
Split paired end reads |
2013-09-25 |
|
1.0.0 |
|
|
To update |
Fastq Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/split_paired_reads |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/split_paired_reads |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
13 |
29 |
66 |
140 |
384 |
0 |
0 |
0 |
0 |
397 |
140 |
69 |
29 |
|
|
|
splitfasta |
rbc_splitfasta |
Split a multi-sequence fasta file into files containing single sequences |
2015-10-16 |
https://github.com/bgruening/galaxytools/tree/master/tools/splitfasta |
0.5.0 |
biopython |
1.70 |
To update |
Text Manipulation |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/splitfasta |
https://github.com/bgruening/galaxytools/tree/master/tools/splitfasta |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
328 |
347 |
2159 |
2222 |
629 |
629 |
3924 |
3924 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6146 |
6083 |
976 |
957 |
https://usegalaxy.eu/published/workflow?id=1f88311a8e365c17, https://usegalaxy.eu/published/workflow?id=a8c8da047f418380, https://usegalaxy.eu/published/workflow?id=d9fa202d2ff28108, https://usegalaxy.org/published/workflow?id=929b7a83015fdcda, https://usegalaxy.org/published/workflow?id=94da3d448bb8a137, https://usegalaxy.org/published/workflow?id=d73c60e406aff265 |
|
|
sshmm |
sshmm |
ssHMM is an RNA sequence-structure motif finder for RNA-binding protein data, such as CLIP-Seq data |
2018-07-05 |
https://github.molgen.mpg.de/heller/ssHMM |
1.0.7 |
sshmm |
1.0.7 |
Up-to-date |
Sequence Analysis, RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sshmm/ |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sshmm |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
17 |
20 |
198 |
227 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
227 |
198 |
20 |
17 |
|
|
|
stats_perf_tool |
stats_perf_tool |
suitable for boolean classification problems |
2015-02-28 |
http://osmot.cs.cornell.edu/kddcup/software.html |
5.11.0 |
perf |
|
To update |
|
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/perf |
https://github.com/bgruening/galaxytools/tree/master/tools/perf |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
stress_ng |
stress_ng |
stress test a computer system in various selectable ways |
2021-03-04 |
|
0.12.04 |
stress-ng |
|
To update |
Web Services |
|
|
|
|
bgruening-util |
https://github.com/ColinIanKing/stress-ng |
https://github.com/bgruening/galaxytools/tree/master/tools/stress_ng |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
62 |
62 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
62 |
62 |
3 |
3 |
|
|
|
structure_to_gspan |
structure_to_gspan |
Convert RNA structure to GSPAN graphs |
2017-05-18 |
|
0.4 |
graphclust-wrappers |
0.6.0 |
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/mmiladi/galaxytools/blob/graphclust-gspan/tools/GraphClust/Structure_GSPAN |
https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/Structure_GSPAN |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
45 |
63 |
847 |
3074 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3074 |
847 |
63 |
45 |
https://usegalaxy.eu/published/workflow?id=9b1b135109072e71, https://usegalaxy.eu/published/workflow?id=bc4155d947ea0808, https://usegalaxy.eu/published/workflow?id=e51f857dd851e7d7 |
|
|
substitution_rates |
subRate1 |
Estimate substitution rates for non-coding regions |
2014-04-01 |
|
1.0.0 |
|
|
To update |
Sequence Analysis, Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitution_rates |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/substitution_rates |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
34 |
747 |
101 |
3901 |
3 |
4 |
88 |
114 |
0 |
0 |
0 |
0 |
4015 |
189 |
751 |
37 |
|
|
|
substitutions |
substitutions1 |
Fetch substitutions from pairwise alignments |
2014-04-01 |
|
1.0.1 |
bx-python |
0.14.0 |
To update |
Sequence Analysis, Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/substitutions |
|
|
|
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
84 |
74 |
901 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
901 |
74 |
84 |
13 |
|
|
|
subtract |
gops_subtract_1 |
Subtract the intervals of two datasets |
2014-04-01 |
https://github.com/galaxyproject/gops |
1.0.0 |
bx-python |
0.14.0 |
To update |
Genomic Interval Operations |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/gops/subtract |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
413 |
481 |
566951 |
567726 |
1348 |
7676 |
49053 |
185201 |
132 |
189 |
20589 |
21010 |
8 |
9 |
1135 |
1145 |
775082 |
637728 |
8355 |
1901 |
https://dev.workflowhub.eu/workflows/1440?version=1, https://dev.workflowhub.eu/workflows/1441?version=1, https://dev.workflowhub.eu/workflows/194?version=2, https://usegalaxy.eu/published/workflow?id=06544e74f583fd05, https://usegalaxy.eu/published/workflow?id=3aaea772745ca295, https://usegalaxy.eu/published/workflow?id=522500fac247be6f, https://usegalaxy.eu/published/workflow?id=5ded4002e684a02c, https://usegalaxy.eu/published/workflow?id=5ec0d6d108e02e1a, https://usegalaxy.eu/published/workflow?id=6c91fe92ef069d64, https://usegalaxy.eu/published/workflow?id=7b7d6a5c6c65d74b, https://usegalaxy.eu/published/workflow?id=7d44ea091d437edf, https://usegalaxy.eu/published/workflow?id=b8fc492025ad6ff0, https://usegalaxy.eu/published/workflow?id=c832ecfa83bcda14, https://usegalaxy.eu/published/workflow?id=d52ff93f4ffdd981, https://usegalaxy.fr/published/workflow?id=0df61a88d64de252, https://usegalaxy.fr/published/workflow?id=a3e9062133fdf7c2, https://usegalaxy.fr/published/workflow?id=bf8ffe72b7ce4570, https://usegalaxy.org.au/published/workflow?id=2955ea7be1cdda29, https://usegalaxy.org.au/published/workflow?id=2b71eb1dc2aa28a1, https://usegalaxy.org.au/published/workflow?id=4b681937a01df465, https://usegalaxy.org.au/published/workflow?id=5cd7f1824db7a960, https://usegalaxy.org.au/published/workflow?id=61a21c9928182ae4, https://usegalaxy.org.au/published/workflow?id=6795e545b0cafded, https://usegalaxy.org.au/published/workflow?id=851552cc3e830253, https://usegalaxy.org.au/published/workflow?id=a77ce877e786d44a, https://usegalaxy.org.au/published/workflow?id=e154a9b605ea0886, https://usegalaxy.org.au/published/workflow?id=ebd1ee73906fdea0, https://usegalaxy.org.au/published/workflow?id=f65b54fcffaa11e5, https://usegalaxy.org/published/workflow?id=0392de36b6f55a8f, https://usegalaxy.org/published/workflow?id=31cc891be77cbc6f, https://usegalaxy.org/published/workflow?id=4ffdb2cf21759d26, https://usegalaxy.org/published/workflow?id=507c817755b2410d, https://usegalaxy.org/published/workflow?id=5834e562fa403732, https://usegalaxy.org/published/workflow?id=65f3a5772ae05a7a, https://usegalaxy.org/published/workflow?id=66748e20a243eafe, https://usegalaxy.org/published/workflow?id=6ba03802169c0063, https://usegalaxy.org/published/workflow?id=7b20a62d69d53efc, https://usegalaxy.org/published/workflow?id=7bc71a005c6f18d0, https://usegalaxy.org/published/workflow?id=b1cd3f793187d667, https://usegalaxy.org/published/workflow?id=d136d24e4c96962a, https://usegalaxy.org/published/workflow?id=f365c53b5024d7f1, https://workflowhub.eu/workflows/138?version=9, https://workflowhub.eu/workflows/356?version=1 |
|
|
subtract_query |
subtract_query1 |
Subtract Whole Dataset from another dataset |
2014-04-01 |
https://github.com/galaxyproject/gops |
0.1 |
bx-python |
0.14.0 |
To update |
Genomic Interval Operations |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/gops/subtract_query |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
127 |
149 |
1149 |
1479 |
606 |
3463 |
2932 |
40656 |
25 |
39 |
796 |
1035 |
15 |
17 |
103 |
125 |
43295 |
4980 |
3668 |
773 |
https://usegalaxy.eu/published/workflow?id=82ef590b5821805d, https://usegalaxy.eu/published/workflow?id=bebcbd6f0ffa55c5, https://usegalaxy.org/published/workflow?id=0115daec07bb1da6, https://usegalaxy.org/published/workflow?id=a3de4b3f7b910059, https://usegalaxy.org/published/workflow?id=b2176abeb937f026 |
|
|
sylph |
sylph_profile, sylph_query |
sylph - fast and precise species-level metagenomic profiling with ANIs |
2024-10-08 |
https://github.com/bluenote-1577/sylph |
0.8.1 |
sylph |
0.8.1 |
Up-to-date |
Metagenomics |
Taxonomic classification |
Taxonomic classification |
Metagenomics |
Metagenomics |
bgruening |
https://github.com/bgruening/galaxytools/main/tools/sylph |
https://github.com/bgruening/galaxytools/tree/master/tools/sylph |
sylph |
sylph |
fast and precise species-level metagenomic profiling with ANIs |
|
2 |
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
t2ps |
Draw_phylogram |
Draw phylogeny |
2014-01-27 |
https://bitbucket.org/natefoo/taxonomy |
1.0.0 |
taxonomy |
0.10.1 |
To update |
Metagenomics |
Phylogenetic tree visualisation |
Phylogenetic tree visualisation |
Phylogenomics |
Phylogenomics |
devteam |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/taxonomy/t2ps |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/taxonomy/t2ps |
t2ps |
Draw phylogeny |
"Given taxonomy representation (produced by *Fetch taxonomic representation* tool) this utility produces a graphical representations of phylogenetic tree in PDF format." - Galaxy tool wrapper |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
67 |
92 |
411 |
478 |
13 |
1240 |
102 |
7952 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8430 |
513 |
1332 |
80 |
https://usegalaxy.org/published/workflow?id=19c9c8cc3c813bda, https://usegalaxy.org/published/workflow?id=2f7638035fb889ac, https://usegalaxy.org/published/workflow?id=55aa743125c2465d, https://usegalaxy.org/published/workflow?id=59347cc210c4cdbc, https://usegalaxy.org/published/workflow?id=7294f75ad01ca7ed, https://usegalaxy.org/published/workflow?id=7b67ffcf1b7c2232, https://usegalaxy.org/published/workflow?id=85d825931edf4a64, https://usegalaxy.org/published/workflow?id=896d29573ea3e574, https://usegalaxy.org/published/workflow?id=d851f8436497dd1c |
|
|
t2t_report |
t2t_report |
Summarize taxonomy |
2014-01-27 |
https://bitbucket.org/natefoo/taxonomy |
1.0.0 |
taxonomy |
0.10.1 |
To update |
Metagenomics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/taxonomy/t2t_report |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/taxonomy/t2t_report |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
63 |
79 |
915 |
960 |
17 |
1143 |
127 |
7194 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8154 |
1042 |
1222 |
80 |
https://usegalaxy.org/published/workflow?id=19c9c8cc3c813bda, https://usegalaxy.org/published/workflow?id=2f7638035fb889ac, https://usegalaxy.org/published/workflow?id=55aa743125c2465d, https://usegalaxy.org/published/workflow?id=59347cc210c4cdbc, https://usegalaxy.org/published/workflow?id=7b67ffcf1b7c2232, https://usegalaxy.org/published/workflow?id=85d825931edf4a64, https://usegalaxy.org/published/workflow?id=896d29573ea3e574, https://usegalaxy.org/published/workflow?id=d851f8436497dd1c |
|
|
t_test_two_samples |
t_test_two_samples |
T Test for Two Samples |
2013-09-25 |
|
1.0.1 |
R |
|
To update |
Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/t_test_two_samples |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/t_test_two_samples |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
20 |
32 |
102 |
218 |
77 |
283 |
404 |
1193 |
11 |
12 |
1037 |
1244 |
3 |
3 |
4 |
4 |
2659 |
1547 |
330 |
111 |
|
|
|
table_annovar |
table_annovar |
Annotate a VCF file using ANNOVAR annotations to produce a tabular file that can be filtered |
2013-12-02 |
|
0.2 |
annovar |
|
To update |
Variant Analysis |
|
|
|
|
devteam |
Nonehttps://github.com/galaxyproject/tools-devteam/tree/master/tools/table_annovar |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/table_annovar |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2438 |
7461 |
13993 |
64533 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
64533 |
13993 |
7461 |
2438 |
https://usegalaxy.org/published/workflow?id=02755c14619242da, https://usegalaxy.org/published/workflow?id=049e6609da2b67c4, https://usegalaxy.org/published/workflow?id=0660a00407fc16a1, https://usegalaxy.org/published/workflow?id=0843c6f15eae2f15, https://usegalaxy.org/published/workflow?id=0a89328e6d28dd07, https://usegalaxy.org/published/workflow?id=0d8eb75d28fa7df2, https://usegalaxy.org/published/workflow?id=10d8d47f97afc999, https://usegalaxy.org/published/workflow?id=17a7ff756d37a437, https://usegalaxy.org/published/workflow?id=1b4ac2bc54435ae4, https://usegalaxy.org/published/workflow?id=1d748868e78275dd, https://usegalaxy.org/published/workflow?id=1e53fcd07ae5d859, https://usegalaxy.org/published/workflow?id=1e6a0d6395cf6221, https://usegalaxy.org/published/workflow?id=202648c6c615929b, https://usegalaxy.org/published/workflow?id=20fe561687df596c, https://usegalaxy.org/published/workflow?id=22f6b939e97d3b47, https://usegalaxy.org/published/workflow?id=2644a8c0da3066c5, https://usegalaxy.org/published/workflow?id=270e2cb6b02afc9c, https://usegalaxy.org/published/workflow?id=2d44e2b020bf94f8, https://usegalaxy.org/published/workflow?id=2dd4f04c7de7d173, https://usegalaxy.org/published/workflow?id=31acbfc6d3775846, https://usegalaxy.org/published/workflow?id=3565de0b5f5da36f, https://usegalaxy.org/published/workflow?id=38cc6577c9b15275, https://usegalaxy.org/published/workflow?id=399b4543d26990f2, https://usegalaxy.org/published/workflow?id=3bed12ef73ba93bf, https://usegalaxy.org/published/workflow?id=3d5347f1e8ee7db2, https://usegalaxy.org/published/workflow?id=414fa13b613b33d8, https://usegalaxy.org/published/workflow?id=415c7152cb78e86f, https://usegalaxy.org/published/workflow?id=4164a02a6bd70893, https://usegalaxy.org/published/workflow?id=43ca7614f6bb03d2, https://usegalaxy.org/published/workflow?id=46d035f814a9b4f8, https://usegalaxy.org/published/workflow?id=483a98be358ce21c, https://usegalaxy.org/published/workflow?id=49f8b32c3206f76c, https://usegalaxy.org/published/workflow?id=4d251ecda59c87c5, https://usegalaxy.org/published/workflow?id=4ed9f54caa932479, https://usegalaxy.org/published/workflow?id=50206b10de958d03, https://usegalaxy.org/published/workflow?id=528ed34505b1a993, https://usegalaxy.org/published/workflow?id=529c6c68df669c51, https://usegalaxy.org/published/workflow?id=53f11afc67ffb66f, https://usegalaxy.org/published/workflow?id=57726b39bbfb0c54, https://usegalaxy.org/published/workflow?id=5cad854edbbd3b69, https://usegalaxy.org/published/workflow?id=5fa548beeb1411f2, https://usegalaxy.org/published/workflow?id=61d03396ad7f25b9, https://usegalaxy.org/published/workflow?id=62ae08ab1133c22f, https://usegalaxy.org/published/workflow?id=62b052f47ccf0a8c, https://usegalaxy.org/published/workflow?id=63e0dcf18794dbc1, https://usegalaxy.org/published/workflow?id=67e56a9919ed84f7, https://usegalaxy.org/published/workflow?id=6822f413a3b09cb4, https://usegalaxy.org/published/workflow?id=68d05aae72fcd2c9, https://usegalaxy.org/published/workflow?id=6d60c4491138813a, https://usegalaxy.org/published/workflow?id=729780617ceb80db, https://usegalaxy.org/published/workflow?id=76247065c01f01d1, https://usegalaxy.org/published/workflow?id=865d2cc4d14ec7e1, https://usegalaxy.org/published/workflow?id=9b32025036bdacb9, https://usegalaxy.org/published/workflow?id=9b4323b68f609e06, https://usegalaxy.org/published/workflow?id=9c0bbf9e1c90cd66, https://usegalaxy.org/published/workflow?id=9d2d8c39b63d8ef0, https://usegalaxy.org/published/workflow?id=9d456396b9cd79d7, https://usegalaxy.org/published/workflow?id=9d626a89800a96ca, https://usegalaxy.org/published/workflow?id=9f5f2e309a3ea50c, https://usegalaxy.org/published/workflow?id=a7a145c196aa55c9, https://usegalaxy.org/published/workflow?id=ab8590a0ee1b9951, https://usegalaxy.org/published/workflow?id=ad6143e2f74e1e94, https://usegalaxy.org/published/workflow?id=ada910fc3a68757a, https://usegalaxy.org/published/workflow?id=adf531bc12766c9b, https://usegalaxy.org/published/workflow?id=af5acb5dd7bfac56, https://usegalaxy.org/published/workflow?id=b33ad2032a655706, https://usegalaxy.org/published/workflow?id=baab0758f2240225, https://usegalaxy.org/published/workflow?id=bb16936081b820f6, https://usegalaxy.org/published/workflow?id=bd184804cfddafc4, https://usegalaxy.org/published/workflow?id=bfee1238c70627cb, https://usegalaxy.org/published/workflow?id=c57c820557ae9b55, https://usegalaxy.org/published/workflow?id=c828990fb009e318, https://usegalaxy.org/published/workflow?id=c95fc8692a886a59, https://usegalaxy.org/published/workflow?id=cfd37af9d6e4cbdb, https://usegalaxy.org/published/workflow?id=d3e656ab45f40c11, https://usegalaxy.org/published/workflow?id=d50b2df115706adb, https://usegalaxy.org/published/workflow?id=d7049965ca7d8ea9, https://usegalaxy.org/published/workflow?id=d85f8ef78040fbb1, https://usegalaxy.org/published/workflow?id=db8443163482a2e0, https://usegalaxy.org/published/workflow?id=dbcf0fbf5329b3fb, https://usegalaxy.org/published/workflow?id=dddd23119443b85e, https://usegalaxy.org/published/workflow?id=df1fa0b73f741a9c, https://usegalaxy.org/published/workflow?id=df6c398b2d4f1e99, https://usegalaxy.org/published/workflow?id=e2d7b8a4e6c422a3, https://usegalaxy.org/published/workflow?id=e51aaf4d6b16b4d4, https://usegalaxy.org/published/workflow?id=e57d595b0cde1614, https://usegalaxy.org/published/workflow?id=e6a6223ef5ef85a7, https://usegalaxy.org/published/workflow?id=e6b803c1232cd08e, https://usegalaxy.org/published/workflow?id=e7030b62a3335bd7, https://usegalaxy.org/published/workflow?id=ebbcdc389aad0eb8, https://usegalaxy.org/published/workflow?id=ec96e3bf30d5f771, https://usegalaxy.org/published/workflow?id=ef44d02a79bd28bf, https://usegalaxy.org/published/workflow?id=f60818a405f1bbbd, https://usegalaxy.org/published/workflow?id=fae519dcba6bfc72, https://usegalaxy.org/published/workflow?id=ff137b61d4ef1b86 |
|
|
tables_arithmetic_operations |
tables_arithmetic_operations |
Arithmetic Operations on tables |
2014-04-01 |
https://github.com/galaxyproject/gops |
1.0.0 |
perl |
|
To update |
Genomic Interval Operations |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/tables_arithmetic_operations |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/gops/tables_arithmetic_operations |
|
|
|
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
32 |
39 |
2130 |
2221 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
5 |
79 |
89 |
2310 |
2209 |
44 |
36 |
https://workflowhub.eu/workflows/789?version=1 |
|
|
tabpfn |
tabpfn |
Tabular data prediction using TabPFN using Pytorch. |
2024-10-14 |
https://github.com/bgruening/galaxytools/tree/master/tools/tabpfn |
2.0.9 |
tabpfn |
|
To update |
Machine Learning |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/tabpfn |
https://github.com/bgruening/galaxytools/tree/master/tools/tabpfn |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
73 |
73 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
73 |
73 |
2 |
2 |
|
|
|
tabular_to_fasta |
tab2fasta |
Tabular-to-FASTA |
2014-05-19 |
|
1.1.1 |
python |
|
To update |
Convert Formats |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/tabular_to_fasta |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/tabular_to_fasta |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1618 |
1887 |
351717 |
358770 |
2284 |
8757 |
69958 |
225414 |
307 |
387 |
34646 |
40645 |
44 |
46 |
2864 |
2877 |
627706 |
459185 |
11077 |
4253 |
https://dev.workflowhub.eu/workflows/1036?version=1, https://dev.workflowhub.eu/workflows/1042?version=1, https://dev.workflowhub.eu/workflows/1077?version=2, https://dev.workflowhub.eu/workflows/1091?version=1, https://dev.workflowhub.eu/workflows/1151?version=2, https://dev.workflowhub.eu/workflows/1173?version=2, https://dev.workflowhub.eu/workflows/1199?version=2, https://dev.workflowhub.eu/workflows/1201?version=2, https://dev.workflowhub.eu/workflows/1204?version=2, https://dev.workflowhub.eu/workflows/1287?version=2, https://dev.workflowhub.eu/workflows/1292?version=2, https://dev.workflowhub.eu/workflows/1380?version=1, https://dev.workflowhub.eu/workflows/1383?version=1, https://dev.workflowhub.eu/workflows/1385?version=2, https://dev.workflowhub.eu/workflows/1386?version=1, https://dev.workflowhub.eu/workflows/1387?version=1, https://dev.workflowhub.eu/workflows/1398?version=1, https://usegalaxy.eu/published/workflow?id=00e246ea459b0991, https://usegalaxy.eu/published/workflow?id=0aee7ffa5f6384bd, https://usegalaxy.eu/published/workflow?id=0ed8817a90caa2b1, https://usegalaxy.eu/published/workflow?id=1031e4c4f18e020e, https://usegalaxy.eu/published/workflow?id=152223c8aed27357, https://usegalaxy.eu/published/workflow?id=17916f0229e3c868, https://usegalaxy.eu/published/workflow?id=1f88311a8e365c17, https://usegalaxy.eu/published/workflow?id=28af61ead68e0976, https://usegalaxy.eu/published/workflow?id=2a7e63d1cc583002, https://usegalaxy.eu/published/workflow?id=2b888e200dfd91bc, https://usegalaxy.eu/published/workflow?id=376119528377a3ae, https://usegalaxy.eu/published/workflow?id=3a8150c81b90a3a7, https://usegalaxy.eu/published/workflow?id=3e0246389fb70340, https://usegalaxy.eu/published/workflow?id=41d096891bada138, https://usegalaxy.eu/published/workflow?id=47a0407867a90f95, https://usegalaxy.eu/published/workflow?id=4bd0827030df02a3, https://usegalaxy.eu/published/workflow?id=50d85103f2275d38, https://usegalaxy.eu/published/workflow?id=585c21b7b1d864fc, https://usegalaxy.eu/published/workflow?id=58db3e1996a8f093, https://usegalaxy.eu/published/workflow?id=6201ec86d380aef1, https://usegalaxy.eu/published/workflow?id=6d3332794ceca465, https://usegalaxy.eu/published/workflow?id=6da171871d4f3fd5, https://usegalaxy.eu/published/workflow?id=77e5bbd317750915, https://usegalaxy.eu/published/workflow?id=79eb28066236e836, https://usegalaxy.eu/published/workflow?id=7c80cd57b2de54d4, https://usegalaxy.eu/published/workflow?id=86900be4282d4b1d, https://usegalaxy.eu/published/workflow?id=933ab5e7fe13a8e0, https://usegalaxy.eu/published/workflow?id=a2c46deea34d9d80, https://usegalaxy.eu/published/workflow?id=a7638e7f908fd90d, https://usegalaxy.eu/published/workflow?id=c8bc4af6dd3b5d02, https://usegalaxy.eu/published/workflow?id=d0a809f0880d7ec0, https://usegalaxy.eu/published/workflow?id=d375fb9af8d46793, https://usegalaxy.eu/published/workflow?id=edea08c943ff9c5e, https://usegalaxy.eu/published/workflow?id=f6a763951d815944, https://usegalaxy.eu/published/workflow?id=f946efa49bd41a43, https://usegalaxy.fr/published/workflow?id=41264142d3c00016, https://usegalaxy.fr/published/workflow?id=8b1678200a1d157a, https://usegalaxy.org.au/published/workflow?id=084bb76cf47d7060, https://usegalaxy.org.au/published/workflow?id=0dff588f31f1dfd6, https://usegalaxy.org.au/published/workflow?id=0ebaaecf61dfc921, https://usegalaxy.org.au/published/workflow?id=13a2c5bd07705985, https://usegalaxy.org.au/published/workflow?id=157e7614ae18849b, https://usegalaxy.org.au/published/workflow?id=1b9bfe7ce484fdc2, https://usegalaxy.org.au/published/workflow?id=4871f853090e8be8, https://usegalaxy.org.au/published/workflow?id=5cfea39918e8632d, https://usegalaxy.org.au/published/workflow?id=65250d6b30d4bc7c, https://usegalaxy.org.au/published/workflow?id=65a659982f955743, https://usegalaxy.org.au/published/workflow?id=762791e094457bf2, https://usegalaxy.org.au/published/workflow?id=7cd4fcc8e06ce4fd, https://usegalaxy.org.au/published/workflow?id=7cddb345877f08bf, https://usegalaxy.org.au/published/workflow?id=b60922a253df6654, https://usegalaxy.org.au/published/workflow?id=cf5ab8fe4e2c0859, https://usegalaxy.org.au/published/workflow?id=d5a3fd1faa3f0a41, https://usegalaxy.org.au/published/workflow?id=eda40b58616a0fe4, https://usegalaxy.org.au/published/workflow?id=ef8c22c2525063a2, https://usegalaxy.org/published/workflow?id=1708fdfd1d485434, https://usegalaxy.org/published/workflow?id=19c9c8cc3c813bda, https://usegalaxy.org/published/workflow?id=1d923ce15c17b1fe, https://usegalaxy.org/published/workflow?id=24ada8b98b04fedc, https://usegalaxy.org/published/workflow?id=2d3063882d8239ff, https://usegalaxy.org/published/workflow?id=2f7638035fb889ac, https://usegalaxy.org/published/workflow?id=336d74481d2f721a, https://usegalaxy.org/published/workflow?id=39810594e5c332d5, https://usegalaxy.org/published/workflow?id=3ef08553982f6ffc, https://usegalaxy.org/published/workflow?id=3f252e077e0bcce5, https://usegalaxy.org/published/workflow?id=55aa743125c2465d, https://usegalaxy.org/published/workflow?id=59347cc210c4cdbc, https://usegalaxy.org/published/workflow?id=63db7f52a280bd2d, https://usegalaxy.org/published/workflow?id=6a3e47124e32e260, https://usegalaxy.org/published/workflow?id=6b5e56d23387e953, https://usegalaxy.org/published/workflow?id=6f836f4b71d399e7, https://usegalaxy.org/published/workflow?id=7294f75ad01ca7ed, https://usegalaxy.org/published/workflow?id=75c2cf36253194c2, https://usegalaxy.org/published/workflow?id=81183f40d2f3e395, https://usegalaxy.org/published/workflow?id=85d825931edf4a64, https://usegalaxy.org/published/workflow?id=896d29573ea3e574, https://usegalaxy.org/published/workflow?id=8d8e8927d63803ef, https://usegalaxy.org/published/workflow?id=8ecc114eb9097855, https://usegalaxy.org/published/workflow?id=a808c139402d7b87, https://usegalaxy.org/published/workflow?id=b0f85c802c1ea7f8, https://usegalaxy.org/published/workflow?id=b28789b6a0e1f5c9, https://usegalaxy.org/published/workflow?id=cce88bc57b180d09, https://usegalaxy.org/published/workflow?id=d3a69b0b826331ef, https://usegalaxy.org/published/workflow?id=d851f8436497dd1c, https://usegalaxy.org/published/workflow?id=e336bca259abd474, https://usegalaxy.org/published/workflow?id=e4f1cce653812a22, https://workflowhub.eu/workflows/1060?version=1, https://workflowhub.eu/workflows/1062?version=1, https://workflowhub.eu/workflows/1407?version=1, https://workflowhub.eu/workflows/1416?version=1, https://workflowhub.eu/workflows/1429?version=1, https://workflowhub.eu/workflows/1434?version=1, https://workflowhub.eu/workflows/1437?version=1, https://workflowhub.eu/workflows/1438?version=1, https://workflowhub.eu/workflows/1442?version=1, https://workflowhub.eu/workflows/1457?version=1, https://workflowhub.eu/workflows/1469?version=1, https://workflowhub.eu/workflows/1487?version=2, https://workflowhub.eu/workflows/1495?version=1, https://workflowhub.eu/workflows/1518?version=1, https://workflowhub.eu/workflows/1630?version=1, https://workflowhub.eu/workflows/1635?version=1, https://workflowhub.eu/workflows/1788?version=1, https://workflowhub.eu/workflows/1790?version=1, https://workflowhub.eu/workflows/1791?version=1, https://workflowhub.eu/workflows/1792?version=1, https://workflowhub.eu/workflows/880?version=1 |
genome-annotation/gene-centric, microbiome/metaplasmidome_query, microbiome/pathogen-detection-from-nanopore-foodborne-data, proteomics/database-handling, proteomics/neoantigen-fusion-database-generation, proteomics/neoantigen-non-reference-database-generation, proteomics/neoantigen-peptide-verification, proteomics/neoantigen-variant-annotation, proteomics/proteogenomics-dbcreation, proteomics/proteogenomics-dbsearch, sequence-analysis/Manage_AB1_Sanger |
|
tapscan |
tapscan_classify |
Search for transcription associated proteins (TAPs) |
2024-02-14 |
https://plantcode.cup.uni-freiburg.de/tapscan/ |
4.76+galaxy0 |
hmmer |
3.4 |
To update |
Proteomics |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/tapscan |
https://github.com/bgruening/galaxytools/tree/master/tools/tapscan |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
9 |
9 |
38 |
38 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
38 |
38 |
9 |
9 |
https://usegalaxy.eu/published/workflow?id=21fc597d983f1194, https://workflowhub.eu/workflows/1650?version=1 |
sequence-analysis/tapscan-streptophyte-algae |
|
targetfinder |
targetfinder |
Plant small RNA target prediction tool |
2015-10-23 |
https://github.com/carringtonlab/TargetFinder.git |
1.7 |
targetfinder |
1.7 |
Up-to-date |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/targetfinder/ |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/targetfinder |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
99 |
102 |
864 |
885 |
59 |
59 |
258 |
258 |
33 |
33 |
1069 |
1069 |
0 |
0 |
0 |
0 |
2212 |
2191 |
194 |
191 |
https://dev.workflowhub.eu/workflows/1318?version=2, https://usegalaxy.eu/published/workflow?id=2d2d0c2231babc50, https://workflowhub.eu/workflows/1717?version=1 |
transcriptomics/mirna-target-finder |
|
text_processing |
tp_awk_tool, tp_cat, tp_cut_tool, tp_easyjoin_tool, tp_find_and_replace, tp_grep_tool, tp_head_tool, tp_multijoin_tool, nl, tp_text_file_with_recurring_lines, tp_replace_in_column, tp_replace_in_line, tp_sed_tool, tp_sort_header_tool, tp_sort_rows, tp_uniq_tool, tp_tac, tp_tail_tool, tp_unfold_column_tool, tp_sorted_uniq |
High performance text processing tools using the GNU coreutils, sed, awk and friends. |
2015-02-28 |
https://www.gnu.org/software/ |
9.5 |
coreutils |
8.25 |
To update |
Text Manipulation |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing |
https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing |
|
|
|
|
20 |
20 |
20 |
20 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
19 |
1 |
19 |
0 |
0 |
0 |
0 |
0 |
20 |
0 |
0 |
0 |
0 |
19 |
20 |
19 |
0 |
5798 |
6502 |
4100067 |
4232269 |
8015 |
12844 |
683504 |
992986 |
1164 |
1235 |
123207 |
126732 |
342 |
342 |
26461 |
26494 |
5378481 |
4933239 |
20923 |
15319 |
https://dev.workflowhub.eu/workflows/1002?version=1, https://dev.workflowhub.eu/workflows/1009?version=1, https://dev.workflowhub.eu/workflows/1010?version=1, https://dev.workflowhub.eu/workflows/1012?version=1, https://dev.workflowhub.eu/workflows/1014?version=1, https://dev.workflowhub.eu/workflows/1021?version=1, https://dev.workflowhub.eu/workflows/1023?version=1, https://dev.workflowhub.eu/workflows/1026?version=1, https://dev.workflowhub.eu/workflows/1035?version=1, https://dev.workflowhub.eu/workflows/1037?version=1, https://dev.workflowhub.eu/workflows/1038?version=1, https://dev.workflowhub.eu/workflows/1042?version=1, https://dev.workflowhub.eu/workflows/1063?version=1, https://dev.workflowhub.eu/workflows/1064?version=1, https://dev.workflowhub.eu/workflows/1069?version=2, https://dev.workflowhub.eu/workflows/1077?version=2, https://dev.workflowhub.eu/workflows/1080?version=1, https://dev.workflowhub.eu/workflows/1081?version=1, https://dev.workflowhub.eu/workflows/1082?version=2, https://dev.workflowhub.eu/workflows/1083?version=1, https://dev.workflowhub.eu/workflows/1084?version=1, https://dev.workflowhub.eu/workflows/1085?version=2, https://dev.workflowhub.eu/workflows/1090?version=2, https://dev.workflowhub.eu/workflows/1091?version=1, https://dev.workflowhub.eu/workflows/1096?version=2, https://dev.workflowhub.eu/workflows/1098?version=1, https://dev.workflowhub.eu/workflows/1099?version=1, https://dev.workflowhub.eu/workflows/1102?version=1, https://dev.workflowhub.eu/workflows/1105?version=2, https://dev.workflowhub.eu/workflows/1106?version=2, https://dev.workflowhub.eu/workflows/1110?version=1, https://dev.workflowhub.eu/workflows/1111?version=1, https://dev.workflowhub.eu/workflows/1113?version=2, https://dev.workflowhub.eu/workflows/1116?version=1, https://dev.workflowhub.eu/workflows/1118?version=1, https://dev.workflowhub.eu/workflows/1127?version=3, https://dev.workflowhub.eu/workflows/1130?version=2, https://dev.workflowhub.eu/workflows/1134?version=1, https://dev.workflowhub.eu/workflows/1136?version=2, https://dev.workflowhub.eu/workflows/1138?version=2, https://dev.workflowhub.eu/workflows/1140?version=2, https://dev.workflowhub.eu/workflows/1141?version=1, https://dev.workflowhub.eu/workflows/1143?version=2, https://dev.workflowhub.eu/workflows/1145?version=1, https://dev.workflowhub.eu/workflows/1149?version=2, https://dev.workflowhub.eu/workflows/1157?version=2, https://dev.workflowhub.eu/workflows/1160?version=2, https://dev.workflowhub.eu/workflows/1177?version=2, https://dev.workflowhub.eu/workflows/1184?version=1, https://dev.workflowhub.eu/workflows/1185?version=2, https://dev.workflowhub.eu/workflows/1187?version=2, https://dev.workflowhub.eu/workflows/1201?version=2, https://dev.workflowhub.eu/workflows/1206?version=1, https://dev.workflowhub.eu/workflows/1208?version=1, https://dev.workflowhub.eu/workflows/120?version=1, https://dev.workflowhub.eu/workflows/1210?version=2, https://dev.workflowhub.eu/workflows/1215?version=2, https://dev.workflowhub.eu/workflows/1222?version=1, https://dev.workflowhub.eu/workflows/1225?version=1, https://dev.workflowhub.eu/workflows/1228?version=1, https://dev.workflowhub.eu/workflows/1230?version=1, https://dev.workflowhub.eu/workflows/1232?version=1, https://dev.workflowhub.eu/workflows/1233?version=1, https://dev.workflowhub.eu/workflows/1235?version=1, https://dev.workflowhub.eu/workflows/1240?version=1, https://dev.workflowhub.eu/workflows/1246?version=2, https://dev.workflowhub.eu/workflows/1250?version=2, https://dev.workflowhub.eu/workflows/1252?version=2, https://dev.workflowhub.eu/workflows/1257?version=1, https://dev.workflowhub.eu/workflows/1264?version=2, https://dev.workflowhub.eu/workflows/1272?version=2, https://dev.workflowhub.eu/workflows/1276?version=2, https://dev.workflowhub.eu/workflows/1283?version=2, https://dev.workflowhub.eu/workflows/1285?version=2, https://dev.workflowhub.eu/workflows/1297?version=1, https://dev.workflowhub.eu/workflows/1301?version=2, https://dev.workflowhub.eu/workflows/1304?version=1, https://dev.workflowhub.eu/workflows/1307?version=1, https://dev.workflowhub.eu/workflows/1309?version=2, https://dev.workflowhub.eu/workflows/1314?version=2, https://dev.workflowhub.eu/workflows/1316?version=1, https://dev.workflowhub.eu/workflows/1321?version=1, https://dev.workflowhub.eu/workflows/1322?version=2, https://dev.workflowhub.eu/workflows/1324?version=3, https://dev.workflowhub.eu/workflows/1326?version=3, https://dev.workflowhub.eu/workflows/1329?version=5, https://dev.workflowhub.eu/workflows/1332?version=1, https://dev.workflowhub.eu/workflows/1333?version=1, https://dev.workflowhub.eu/workflows/1336?version=2, https://dev.workflowhub.eu/workflows/1338?version=1, https://dev.workflowhub.eu/workflows/1351?version=1, https://dev.workflowhub.eu/workflows/1354?version=1, https://dev.workflowhub.eu/workflows/1359?version=1, https://dev.workflowhub.eu/workflows/1363?version=1, https://dev.workflowhub.eu/workflows/1367?version=1, https://dev.workflowhub.eu/workflows/1369?version=1, https://dev.workflowhub.eu/workflows/1372?version=1, https://dev.workflowhub.eu/workflows/1380?version=1, https://dev.workflowhub.eu/workflows/1381?version=1, https://dev.workflowhub.eu/workflows/1383?version=1, https://dev.workflowhub.eu/workflows/1386?version=1, https://dev.workflowhub.eu/workflows/1390?version=1, https://dev.workflowhub.eu/workflows/1392?version=1, https://dev.workflowhub.eu/workflows/1395?version=1, https://dev.workflowhub.eu/workflows/1398?version=1, https://dev.workflowhub.eu/workflows/143?version=1, https://dev.workflowhub.eu/workflows/144?version=1, https://dev.workflowhub.eu/workflows/162?version=3, https://dev.workflowhub.eu/workflows/195?version=2, https://dev.workflowhub.eu/workflows/196?version=2, https://dev.workflowhub.eu/workflows/199?version=2, https://dev.workflowhub.eu/workflows/236?version=2, https://dev.workflowhub.eu/workflows/247?version=2, https://dev.workflowhub.eu/workflows/248?version=3, https://dev.workflowhub.eu/workflows/40?version=1, https://dev.workflowhub.eu/workflows/574?version=1, https://dev.workflowhub.eu/workflows/583?version=1, https://dev.workflowhub.eu/workflows/627?version=2, https://usegalaxy.cz/published/workflow?id=a5241f01bb65bd38, https://usegalaxy.eu/published/workflow?id=002a51bdef00e14d, https://usegalaxy.eu/published/workflow?id=012762cb4acb068b, https://usegalaxy.eu/published/workflow?id=0189bab68f828d86, https://usegalaxy.eu/published/workflow?id=01fe4c590e608103, https://usegalaxy.eu/published/workflow?id=020f877513f2d0d1, https://usegalaxy.eu/published/workflow?id=0229f3f3835c2d53, https://usegalaxy.eu/published/workflow?id=023a0ee62dd1f593, https://usegalaxy.eu/published/workflow?id=02631612a43a4d9b, https://usegalaxy.eu/published/workflow?id=02655d0e4af0ee0d, https://usegalaxy.eu/published/workflow?id=02f240f6cf72080a, https://usegalaxy.eu/published/workflow?id=032a7281a86eba0d, https://usegalaxy.eu/published/workflow?id=035f85c1615e0b7b, https://usegalaxy.eu/published/workflow?id=036990ecf300a99f, https://usegalaxy.eu/published/workflow?id=03bb4c20a1f4b4de, https://usegalaxy.eu/published/workflow?id=03be9d62e8e4a129, https://usegalaxy.eu/published/workflow?id=03e8b0d3dcedc092, https://usegalaxy.eu/published/workflow?id=0444c98a3ca2a3ca, https://usegalaxy.eu/published/workflow?id=04b838103aed1929, https://usegalaxy.eu/published/workflow?id=04dbf1e548db74fd, https://usegalaxy.eu/published/workflow?id=04df470a38b10e94, https://usegalaxy.eu/published/workflow?id=05bd1d9c61df5d16, https://usegalaxy.eu/published/workflow?id=0609a4b1941d1a68, https://usegalaxy.eu/published/workflow?id=06fe33c4420906bf, https://usegalaxy.eu/published/workflow?id=079e2a968d8e6176, https://usegalaxy.eu/published/workflow?id=07b440eec3ac7c2e, https://usegalaxy.eu/published/workflow?id=07e1478df88a17cc, https://usegalaxy.eu/published/workflow?id=085c3a4c89d137b5, https://usegalaxy.eu/published/workflow?id=0882300f7b399587, https://usegalaxy.eu/published/workflow?id=089e5e83b1de0511, https://usegalaxy.eu/published/workflow?id=08e25b733cd796e6, https://usegalaxy.eu/published/workflow?id=08eb5e55109c4d9c, https://usegalaxy.eu/published/workflow?id=0909859a02040efc, https://usegalaxy.eu/published/workflow?id=096b75501c8e0888, https://usegalaxy.eu/published/workflow?id=098f43ded1b5fa7f, https://usegalaxy.eu/published/workflow?id=09c7069ae409c362, https://usegalaxy.eu/published/workflow?id=0a3ebee985c26060, https://usegalaxy.eu/published/workflow?id=0ae360bfbb3b2494, https://usegalaxy.eu/published/workflow?id=0bc971d84327da50, https://usegalaxy.eu/published/workflow?id=0be293debca8fb9b, https://usegalaxy.eu/published/workflow?id=0bfb81f2a0202b25, https://usegalaxy.eu/published/workflow?id=0c3ce9feb83f7920, https://usegalaxy.eu/published/workflow?id=0c619b25c1394a09, https://usegalaxy.eu/published/workflow?id=0c94260298199d8b, https://usegalaxy.eu/published/workflow?id=0cf3c2114ab65858, https://usegalaxy.eu/published/workflow?id=0d24e8ff7221c9dc, https://usegalaxy.eu/published/workflow?id=0de5fcc38ef1501d, https://usegalaxy.eu/published/workflow?id=0e492839192d26e0, https://usegalaxy.eu/published/workflow?id=0e6e181234b48121, https://usegalaxy.eu/published/workflow?id=0eb137cd936bbfe0, https://usegalaxy.eu/published/workflow?id=0ed8817a90caa2b1, https://usegalaxy.eu/published/workflow?id=0edf0e9a778cb732, https://usegalaxy.eu/published/workflow?id=0f044c9f62773a88, https://usegalaxy.eu/published/workflow?id=0f207a15b6f7fa10, https://usegalaxy.eu/published/workflow?id=0f6a7bd5362e4a2b, https://usegalaxy.eu/published/workflow?id=0f7acf235096b708, https://usegalaxy.eu/published/workflow?id=0fb12e3a127fc4be, https://usegalaxy.eu/published/workflow?id=1089e5c66dbcc1a3, https://usegalaxy.eu/published/workflow?id=111527fe542846af, https://usegalaxy.eu/published/workflow?id=1151052f4393852a, https://usegalaxy.eu/published/workflow?id=117177b0c231dc55, https://usegalaxy.eu/published/workflow?id=11eba1b28ec87963, https://usegalaxy.eu/published/workflow?id=124f884ee53685e8, https://usegalaxy.eu/published/workflow?id=12a018217ee146ca, https://usegalaxy.eu/published/workflow?id=12b0bd336c76a874, https://usegalaxy.eu/published/workflow?id=12bf85cdc8102bb5, https://usegalaxy.eu/published/workflow?id=133b299125ff9905, https://usegalaxy.eu/published/workflow?id=13a7b30df801ea47, https://usegalaxy.eu/published/workflow?id=146cef3acb2eba75, https://usegalaxy.eu/published/workflow?id=14714876dda7186d, https://usegalaxy.eu/published/workflow?id=1483534f49b826bf, https://usegalaxy.eu/published/workflow?id=14b9753269cd368f, https://usegalaxy.eu/published/workflow?id=152223c8aed27357, https://usegalaxy.eu/published/workflow?id=1526d3918b201c72, https://usegalaxy.eu/published/workflow?id=153ba1581743d31f, https://usegalaxy.eu/published/workflow?id=1590085d315aa80e, https://usegalaxy.eu/published/workflow?id=16080c3c1488a8b5, https://usegalaxy.eu/published/workflow?id=16418e8b023ff226, https://usegalaxy.eu/published/workflow?id=166eb3f14feffa1b, https://usegalaxy.eu/published/workflow?id=16ab4c91858942dd, https://usegalaxy.eu/published/workflow?id=171d6fca2c3339e2, https://usegalaxy.eu/published/workflow?id=17ad465d9515cd25, https://usegalaxy.eu/published/workflow?id=17d2e76147fc940c, https://usegalaxy.eu/published/workflow?id=17e720bee3b9104f, https://usegalaxy.eu/published/workflow?id=1829cf717650652e, https://usegalaxy.eu/published/workflow?id=18af9bbae833f8fe, https://usegalaxy.eu/published/workflow?id=194a05d42687b524, https://usegalaxy.eu/published/workflow?id=19bb27eea9bcdb6f, https://usegalaxy.eu/published/workflow?id=19bb57f8cfa48bb9, https://usegalaxy.eu/published/workflow?id=19f139dc7d2727e6, https://usegalaxy.eu/published/workflow?id=1aa1344d6145ade3, https://usegalaxy.eu/published/workflow?id=1ac0a15758277730, https://usegalaxy.eu/published/workflow?id=1ac5745645634825, https://usegalaxy.eu/published/workflow?id=1af73dc855d0a5ed, https://usegalaxy.eu/published/workflow?id=1b10ece62e745125, https://usegalaxy.eu/published/workflow?id=1b72af1870c540d6, https://usegalaxy.eu/published/workflow?id=1bb084f1bc102734, https://usegalaxy.eu/published/workflow?id=1c267e93aa8015e6, https://usegalaxy.eu/published/workflow?id=1c44bbaa5f4f8b54, https://usegalaxy.eu/published/workflow?id=1c85626b12cf3ac5, https://usegalaxy.eu/published/workflow?id=1d1ae39386b5c318, https://usegalaxy.eu/published/workflow?id=1d2e17a4f71f2455, https://usegalaxy.eu/published/workflow?id=1d4e81b51eae43c4, https://usegalaxy.eu/published/workflow?id=1da7ac8eaf891f39, https://usegalaxy.eu/published/workflow?id=1da86d74f8535f4e, https://usegalaxy.eu/published/workflow?id=1dba8278fb2786fb, https://usegalaxy.eu/published/workflow?id=1e02a7292e9974b1, https://usegalaxy.eu/published/workflow?id=1e7f4ba6261f979c, https://usegalaxy.eu/published/workflow?id=1eac2ebffcbb8d59, https://usegalaxy.eu/published/workflow?id=1ee43d90b69829e9, https://usegalaxy.eu/published/workflow?id=1f2a1438e41188f2, https://usegalaxy.eu/published/workflow?id=1f3f6757de60d3cf, https://usegalaxy.eu/published/workflow?id=1f88311a8e365c17, https://usegalaxy.eu/published/workflow?id=1f9a9a7998ef5ab3, https://usegalaxy.eu/published/workflow?id=204854b8ec94da85, https://usegalaxy.eu/published/workflow?id=20592f292c205954, https://usegalaxy.eu/published/workflow?id=20ada53472782c9b, https://usegalaxy.eu/published/workflow?id=21a39ac4c1becb31, https://usegalaxy.eu/published/workflow?id=21a3f72851f29925, https://usegalaxy.eu/published/workflow?id=21aba070546c3c51, https://usegalaxy.eu/published/workflow?id=21dd4bd16579fc12, https://usegalaxy.eu/published/workflow?id=220961d803697f54, https://usegalaxy.eu/published/workflow?id=2294ef9515bcf972, https://usegalaxy.eu/published/workflow?id=22c4a7a4d41a3f06, https://usegalaxy.eu/published/workflow?id=2424282f793f0f1b, https://usegalaxy.eu/published/workflow?id=2469d5a9b58697d1, https://usegalaxy.eu/published/workflow?id=2497292e98937a5f, https://usegalaxy.eu/published/workflow?id=249c5d6698c8b98c, https://usegalaxy.eu/published/workflow?id=24ddd188da35b061, https://usegalaxy.eu/published/workflow?id=2573209308aaad23, https://usegalaxy.eu/published/workflow?id=25aa944237d7fb82, https://usegalaxy.eu/published/workflow?id=2671a5f85b2cccfe, https://usegalaxy.eu/published/workflow?id=270b6f82efab28b2, https://usegalaxy.eu/published/workflow?id=27fca972f1d1a312, https://usegalaxy.eu/published/workflow?id=288da0863f5032f3, https://usegalaxy.eu/published/workflow?id=29346872085adf1f, https://usegalaxy.eu/published/workflow?id=29c97d43eeb8ed63, https://usegalaxy.eu/published/workflow?id=2a1b21d39ebb6e49, https://usegalaxy.eu/published/workflow?id=2a33d4fcb806e942, https://usegalaxy.eu/published/workflow?id=2a39dbc8fc6dd5d3, https://usegalaxy.eu/published/workflow?id=2a73d658446747de, https://usegalaxy.eu/published/workflow?id=2ae4a83327615155, https://usegalaxy.eu/published/workflow?id=2b25eaebd3987612, https://usegalaxy.eu/published/workflow?id=2b888e200dfd91bc, https://usegalaxy.eu/published/workflow?id=2c2f0b4312bae4f4, https://usegalaxy.eu/published/workflow?id=2c3d05023c02113e, https://usegalaxy.eu/published/workflow?id=2c5cae1389c11881, https://usegalaxy.eu/published/workflow?id=2c79eee5ca5a3b09, https://usegalaxy.eu/published/workflow?id=2cf9f0e2ab5a7f8b, https://usegalaxy.eu/published/workflow?id=2d0400b5d05c6c10, https://usegalaxy.eu/published/workflow?id=2d2d0c2231babc50, https://usegalaxy.eu/published/workflow?id=2d509fad86eb97fb, https://usegalaxy.eu/published/workflow?id=2d9d4445a1871230, https://usegalaxy.eu/published/workflow?id=2e418c5810012e5a, https://usegalaxy.eu/published/workflow?id=2e6561d8dadc9e17, https://usegalaxy.eu/published/workflow?id=2ebf65efe8ca4a7f, https://usegalaxy.eu/published/workflow?id=2f094f5e1f391529, https://usegalaxy.eu/published/workflow?id=2f37c35ade97aa8d, https://usegalaxy.eu/published/workflow?id=2f51a82838722bec, https://usegalaxy.eu/published/workflow?id=2f7149d02db43b7b, https://usegalaxy.eu/published/workflow?id=3010ecad1a342331, https://usegalaxy.eu/published/workflow?id=30623c815283da67, https://usegalaxy.eu/published/workflow?id=3069c17b52decab4, https://usegalaxy.eu/published/workflow?id=30e7dc81e323cbdb, https://usegalaxy.eu/published/workflow?id=3192f92ac4d389b8, https://usegalaxy.eu/published/workflow?id=31c6dcd3a25620df, https://usegalaxy.eu/published/workflow?id=31f8c7c46207432f, https://usegalaxy.eu/published/workflow?id=321ea55011f1248f, https://usegalaxy.eu/published/workflow?id=32219131f48494bf, https://usegalaxy.eu/published/workflow?id=326d4102190b74fc, https://usegalaxy.eu/published/workflow?id=3358c516f5412e92, https://usegalaxy.eu/published/workflow?id=33a052f9a3d5551d, https://usegalaxy.eu/published/workflow?id=342a5df69951e3d7, https://usegalaxy.eu/published/workflow?id=34861c3c63048d6b, https://usegalaxy.eu/published/workflow?id=36eefcc25ab1fe15, https://usegalaxy.eu/published/workflow?id=3729015f676693c8, https://usegalaxy.eu/published/workflow?id=373d861ef4b0081a, https://usegalaxy.eu/published/workflow?id=37499202ce35c2d8, https://usegalaxy.eu/published/workflow?id=376119528377a3ae, https://usegalaxy.eu/published/workflow?id=379642036b6f5a66, https://usegalaxy.eu/published/workflow?id=37b04b02ec08e84f, https://usegalaxy.eu/published/workflow?id=389d992ff7268247, https://usegalaxy.eu/published/workflow?id=392a5d91ac221104, https://usegalaxy.eu/published/workflow?id=399048afb4acef3d, https://usegalaxy.eu/published/workflow?id=39afbf843b5513bf, https://usegalaxy.eu/published/workflow?id=39b195a36408277c, https://usegalaxy.eu/published/workflow?id=3a3e2d50fe7a9ee3, https://usegalaxy.eu/published/workflow?id=3a4ef58e24e7b1ef, https://usegalaxy.eu/published/workflow?id=3a7a0abd351f2cbb, https://usegalaxy.eu/published/workflow?id=3a8150c81b90a3a7, https://usegalaxy.eu/published/workflow?id=3b57fc81001667b5, https://usegalaxy.eu/published/workflow?id=3b8ef7905c902b27, https://usegalaxy.eu/published/workflow?id=3c6ff60d1d3ceb3d, https://usegalaxy.eu/published/workflow?id=3ce75b5de4922cba, https://usegalaxy.eu/published/workflow?id=3dec7c9b02c3d1ee, https://usegalaxy.eu/published/workflow?id=3e0246389fb70340, https://usegalaxy.eu/published/workflow?id=3e255a5b7026d26e, https://usegalaxy.eu/published/workflow?id=3eaa913306c16146, https://usegalaxy.eu/published/workflow?id=3eb6663a66f8e69a, https://usegalaxy.eu/published/workflow?id=3f5414bb38b47fcf, https://usegalaxy.eu/published/workflow?id=3f8e91403a27f1c1, https://usegalaxy.eu/published/workflow?id=406e6ef0dfb38628, https://usegalaxy.eu/published/workflow?id=409336bf210033a2, https://usegalaxy.eu/published/workflow?id=40a621934a07c7ee, https://usegalaxy.eu/published/workflow?id=412617e754e76528, https://usegalaxy.eu/published/workflow?id=416141b245073406, https://usegalaxy.eu/published/workflow?id=4176b9d43325a8d8, https://usegalaxy.eu/published/workflow?id=41e9882300fa2386, https://usegalaxy.eu/published/workflow?id=429ae28a178cd07c, https://usegalaxy.eu/published/workflow?id=43098b8afe78b071, https://usegalaxy.eu/published/workflow?id=4309cbf427fa1f78, https://usegalaxy.eu/published/workflow?id=437704898229dfb6, https://usegalaxy.eu/published/workflow?id=44a2b6c8ae54eb31, https://usegalaxy.eu/published/workflow?id=44c92c04f1d14631, https://usegalaxy.eu/published/workflow?id=44e16f0782f54111, https://usegalaxy.eu/published/workflow?id=4516fe237a7112cc, https://usegalaxy.eu/published/workflow?id=454f3b736267aa2d, https://usegalaxy.eu/published/workflow?id=45c5e0a1e10edc54, https://usegalaxy.eu/published/workflow?id=45f63151bf4f1a49, https://usegalaxy.eu/published/workflow?id=461bd2ef88dd737c, https://usegalaxy.eu/published/workflow?id=461d71caea871db8, https://usegalaxy.eu/published/workflow?id=4643edf74f3eaec3, https://usegalaxy.eu/published/workflow?id=466bdd8ba7b67264, https://usegalaxy.eu/published/workflow?id=470656ef317c9dd5, https://usegalaxy.eu/published/workflow?id=471eb8b4c54f897d, https://usegalaxy.eu/published/workflow?id=475e4a5c3b1acda3, https://usegalaxy.eu/published/workflow?id=475ea16f943cc013, https://usegalaxy.eu/published/workflow?id=476db04368d5e90c, https://usegalaxy.eu/published/workflow?id=478190607a114390, https://usegalaxy.eu/published/workflow?id=47a0407867a90f95, https://usegalaxy.eu/published/workflow?id=4856e3522b2ee059, https://usegalaxy.eu/published/workflow?id=48d0dc424e71d8c2, https://usegalaxy.eu/published/workflow?id=48f63ef14a12f306, https://usegalaxy.eu/published/workflow?id=48fe9c4de045d414, https://usegalaxy.eu/published/workflow?id=49073a24429d93d6, https://usegalaxy.eu/published/workflow?id=4949751217c0e211, https://usegalaxy.eu/published/workflow?id=497b82d3b92dc076, https://usegalaxy.eu/published/workflow?id=498311923691884b, https://usegalaxy.eu/published/workflow?id=49d3cbacd6112a72, https://usegalaxy.eu/published/workflow?id=4a51e616d96338ed, https://usegalaxy.eu/published/workflow?id=4b4bfc79205d83f1, https://usegalaxy.eu/published/workflow?id=4b9459829b45ec67, https://usegalaxy.eu/published/workflow?id=4bfc4aa8059e8913, https://usegalaxy.eu/published/workflow?id=4c0000eb4995a310, https://usegalaxy.eu/published/workflow?id=4c04ac4d83943437, https://usegalaxy.eu/published/workflow?id=4c3a9b574f37eebb, https://usegalaxy.eu/published/workflow?id=4c75ab0be3c56494, https://usegalaxy.eu/published/workflow?id=4cb25c0bb103f54f, https://usegalaxy.eu/published/workflow?id=4cb8f782994763a4, https://usegalaxy.eu/published/workflow?id=4d41ee83fc0040d4, https://usegalaxy.eu/published/workflow?id=4d80a87510b2a54e, https://usegalaxy.eu/published/workflow?id=4d97068a725c975c, https://usegalaxy.eu/published/workflow?id=4daa0c33d6d50379, https://usegalaxy.eu/published/workflow?id=4ddf2ec5c460d622, https://usegalaxy.eu/published/workflow?id=4e9a2e12467bc02e, https://usegalaxy.eu/published/workflow?id=4f51080ffe7d57e0, https://usegalaxy.eu/published/workflow?id=4f62794453f65cba, https://usegalaxy.eu/published/workflow?id=5009d8d7a907a825, https://usegalaxy.eu/published/workflow?id=503a2f4caacaf63e, https://usegalaxy.eu/published/workflow?id=510bcef37f385495, https://usegalaxy.eu/published/workflow?id=5115299e77df8104, https://usegalaxy.eu/published/workflow?id=5138874b208adb4b, https://usegalaxy.eu/published/workflow?id=518469bc5efb8728, https://usegalaxy.eu/published/workflow?id=51b0f5f95075cf7b, https://usegalaxy.eu/published/workflow?id=5279af5c95ae4f7a, https://usegalaxy.eu/published/workflow?id=529f30e894beacc2, https://usegalaxy.eu/published/workflow?id=52bdf400f97c5770, https://usegalaxy.eu/published/workflow?id=52cb9bacc26b013e, https://usegalaxy.eu/published/workflow?id=5374daf356516a40, https://usegalaxy.eu/published/workflow?id=5385abe9c2589b69, https://usegalaxy.eu/published/workflow?id=5395e76fa828c343, https://usegalaxy.eu/published/workflow?id=53cdd6bf98e4c77d, https://usegalaxy.eu/published/workflow?id=53de0e742573e588, https://usegalaxy.eu/published/workflow?id=54590ccd11ffbf65, https://usegalaxy.eu/published/workflow?id=54b91dd86f463391, https://usegalaxy.eu/published/workflow?id=55a9fc5d30392777, https://usegalaxy.eu/published/workflow?id=55b66e0164f0c84b, https://usegalaxy.eu/published/workflow?id=55ead91471bf1008, https://usegalaxy.eu/published/workflow?id=579a56c129883cf3, https://usegalaxy.eu/published/workflow?id=579dd1e95e76402f, https://usegalaxy.eu/published/workflow?id=57cc33ed64d71982, https://usegalaxy.eu/published/workflow?id=57cfe5062c8e01bf, https://usegalaxy.eu/published/workflow?id=585c21b7b1d864fc, https://usegalaxy.eu/published/workflow?id=587e4d5ce25f48da, https://usegalaxy.eu/published/workflow?id=58955868b504c60d, https://usegalaxy.eu/published/workflow?id=58e02abff434734e, https://usegalaxy.eu/published/workflow?id=5900578d64e01001, https://usegalaxy.eu/published/workflow?id=5ad406442ec21345, https://usegalaxy.eu/published/workflow?id=5bf6718e7d6158d2, https://usegalaxy.eu/published/workflow?id=5c15f251642bfa1f, https://usegalaxy.eu/published/workflow?id=5c7a9738cbc10897, https://usegalaxy.eu/published/workflow?id=5cc732a6b4338bf5, https://usegalaxy.eu/published/workflow?id=5d793801998146bc, https://usegalaxy.eu/published/workflow?id=5e1906290f5b4d8a, https://usegalaxy.eu/published/workflow?id=5e1b048040ea7535, https://usegalaxy.eu/published/workflow?id=5e4135eeb4972709, https://usegalaxy.eu/published/workflow?id=5ec0d6d108e02e1a, https://usegalaxy.eu/published/workflow?id=5ed38d8114bcd6f7, https://usegalaxy.eu/published/workflow?id=5fa6d3989ea4c582, https://usegalaxy.eu/published/workflow?id=5fb6cb6c80a5c62f, https://usegalaxy.eu/published/workflow?id=6006e42ec358c785, https://usegalaxy.eu/published/workflow?id=6064d1dd87b458be, https://usegalaxy.eu/published/workflow?id=607ca3a9d45bd080, https://usegalaxy.eu/published/workflow?id=60b14522152d2c0b, https://usegalaxy.eu/published/workflow?id=60e0b2a28a900178, https://usegalaxy.eu/published/workflow?id=6158c3b5fc12044e, https://usegalaxy.eu/published/workflow?id=61dcc0998fa4d309, https://usegalaxy.eu/published/workflow?id=61fe08fb3d5e83f8, https://usegalaxy.eu/published/workflow?id=6201ec86d380aef1, https://usegalaxy.eu/published/workflow?id=62998b8a162d30c1, https://usegalaxy.eu/published/workflow?id=629e57958afed44c, https://usegalaxy.eu/published/workflow?id=63c91ea322cd2819, https://usegalaxy.eu/published/workflow?id=63eed9c2e025a723, https://usegalaxy.eu/published/workflow?id=6416cfdbd5273063, https://usegalaxy.eu/published/workflow?id=64abcddeb516a712, https://usegalaxy.eu/published/workflow?id=64bb7a64877034dc, https://usegalaxy.eu/published/workflow?id=6514e610c79df72c, https://usegalaxy.eu/published/workflow?id=652433160b04b232, https://usegalaxy.eu/published/workflow?id=65612d13b50547c8, https://usegalaxy.eu/published/workflow?id=6573f3b1606b7f09, https://usegalaxy.eu/published/workflow?id=667bac8d7453e5f1, https://usegalaxy.eu/published/workflow?id=667d05ae290d11ea, https://usegalaxy.eu/published/workflow?id=66f2a58637054c16, https://usegalaxy.eu/published/workflow?id=67be21795d403ca3, https://usegalaxy.eu/published/workflow?id=67e20e3082d24fbd, https://usegalaxy.eu/published/workflow?id=6865f33cffca4922, https://usegalaxy.eu/published/workflow?id=68e8042f11d5a3fd, https://usegalaxy.eu/published/workflow?id=69cdd404592535ec, https://usegalaxy.eu/published/workflow?id=69eed719f9b5b99d, https://usegalaxy.eu/published/workflow?id=6aa2891bd2b41f32, https://usegalaxy.eu/published/workflow?id=6aaf2b342d57f78d, https://usegalaxy.eu/published/workflow?id=6c0560c041bde8c6, https://usegalaxy.eu/published/workflow?id=6c14b08a7ef7e79a, https://usegalaxy.eu/published/workflow?id=6d333ed886aab471, https://usegalaxy.eu/published/workflow?id=6dbac47941a804da, https://usegalaxy.eu/published/workflow?id=6e0330de5d80e619, https://usegalaxy.eu/published/workflow?id=6e1fe7372e93fae0, https://usegalaxy.eu/published/workflow?id=6e6cf59bfeb938bf, https://usegalaxy.eu/published/workflow?id=6ea9c7e45df94bf8, https://usegalaxy.eu/published/workflow?id=6ebd09100fc98878, https://usegalaxy.eu/published/workflow?id=6ed089fe65347272, https://usegalaxy.eu/published/workflow?id=6ed1016dfdf9f928, https://usegalaxy.eu/published/workflow?id=6fc2b9bea5b75a49, https://usegalaxy.eu/published/workflow?id=700fa3ab11a8f3e2, https://usegalaxy.eu/published/workflow?id=70cae21eafab7c03, https://usegalaxy.eu/published/workflow?id=70ec8b1719e25982, https://usegalaxy.eu/published/workflow?id=7136ce9f18c74853, https://usegalaxy.eu/published/workflow?id=713e7c113a764ffb, https://usegalaxy.eu/published/workflow?id=71816adecac46e74, https://usegalaxy.eu/published/workflow?id=71a6d128a09210f0, https://usegalaxy.eu/published/workflow?id=71a7113386b2cdc1, https://usegalaxy.eu/published/workflow?id=71c4ec4805f83cd5, https://usegalaxy.eu/published/workflow?id=732fa536cdc70c96, https://usegalaxy.eu/published/workflow?id=7337d15d121596da, https://usegalaxy.eu/published/workflow?id=739214a6dfa194e1, https://usegalaxy.eu/published/workflow?id=73aa794916b91bb2, https://usegalaxy.eu/published/workflow?id=73b41b975da284d5, https://usegalaxy.eu/published/workflow?id=73dc2384535bf6af, https://usegalaxy.eu/published/workflow?id=749bb05ec8674bec, https://usegalaxy.eu/published/workflow?id=74e4a8f2edb25f1a, https://usegalaxy.eu/published/workflow?id=74f19aff1b9cdd6b, https://usegalaxy.eu/published/workflow?id=7582a48054c44d6e, https://usegalaxy.eu/published/workflow?id=75e88603745e069e, https://usegalaxy.eu/published/workflow?id=76e9cd837ea5e7da, https://usegalaxy.eu/published/workflow?id=7705b1e25110baf4, https://usegalaxy.eu/published/workflow?id=77d2adf5249eb826, https://usegalaxy.eu/published/workflow?id=77db45ad90b4033d, https://usegalaxy.eu/published/workflow?id=77e5bbd317750915, https://usegalaxy.eu/published/workflow?id=77e85bde57477194, https://usegalaxy.eu/published/workflow?id=77f3132d1b879603, https://usegalaxy.eu/published/workflow?id=77fa6e5a8fa3f911, https://usegalaxy.eu/published/workflow?id=7878623b7e959284, https://usegalaxy.eu/published/workflow?id=79b5afb125e3c3da, https://usegalaxy.eu/published/workflow?id=79eb28066236e836, https://usegalaxy.eu/published/workflow?id=79fd2517af48c594, https://usegalaxy.eu/published/workflow?id=7b4a9aebb09b51ca, https://usegalaxy.eu/published/workflow?id=7b50e72deb46c6e8, https://usegalaxy.eu/published/workflow?id=7bcac5c6594e866c, https://usegalaxy.eu/published/workflow?id=7bda7ae31c427347, https://usegalaxy.eu/published/workflow?id=7bdd9ad918edab0b, https://usegalaxy.eu/published/workflow?id=7caa58e36df6ad03, https://usegalaxy.eu/published/workflow?id=7cbda24fd0767899, https://usegalaxy.eu/published/workflow?id=7d343d982f1105bf, https://usegalaxy.eu/published/workflow?id=7d44ea091d437edf, https://usegalaxy.eu/published/workflow?id=7dd7908f4c8d722a, https://usegalaxy.eu/published/workflow?id=7e0ba4c14803448e, https://usegalaxy.eu/published/workflow?id=7e383fe34031a9d0, https://usegalaxy.eu/published/workflow?id=7e68cf8a67efa8e9, https://usegalaxy.eu/published/workflow?id=7ea91d562a02eb2f, https://usegalaxy.eu/published/workflow?id=7f76e43f19b27b22, https://usegalaxy.eu/published/workflow?id=805979703dc7cc01, https://usegalaxy.eu/published/workflow?id=8132c3b710fd6d48, https://usegalaxy.eu/published/workflow?id=8156471dd0223d67, https://usegalaxy.eu/published/workflow?id=8172bf190ce30036, https://usegalaxy.eu/published/workflow?id=81f1927bfe3ffea1, https://usegalaxy.eu/published/workflow?id=82879b0eb4a71ad0, https://usegalaxy.eu/published/workflow?id=82ef590b5821805d, https://usegalaxy.eu/published/workflow?id=83049910e2cd5128, https://usegalaxy.eu/published/workflow?id=830eb4faff21eb0c, https://usegalaxy.eu/published/workflow?id=83c5bf0208f4d217, https://usegalaxy.eu/published/workflow?id=841367f185aaade4, https://usegalaxy.eu/published/workflow?id=84236d781f7dd2ad, https://usegalaxy.eu/published/workflow?id=843c10c447496280, https://usegalaxy.eu/published/workflow?id=847403b72dd346ff, https://usegalaxy.eu/published/workflow?id=8483717d51fde024, https://usegalaxy.eu/published/workflow?id=84c95f31896213fd, https://usegalaxy.eu/published/workflow?id=865715636d40b798, https://usegalaxy.eu/published/workflow?id=86ae00e3d9ae2978, https://usegalaxy.eu/published/workflow?id=86e2e2faa2e0bd46, https://usegalaxy.eu/published/workflow?id=86f3d5053996d3e8, https://usegalaxy.eu/published/workflow?id=873e6ac4699ed7f6, https://usegalaxy.eu/published/workflow?id=88f5cef7e4146520, https://usegalaxy.eu/published/workflow?id=89358143505d6dad, https://usegalaxy.eu/published/workflow?id=895b8f5736bb92bb, https://usegalaxy.eu/published/workflow?id=89ed570bc0703472, https://usegalaxy.eu/published/workflow?id=8a14cda6140acab7, https://usegalaxy.eu/published/workflow?id=8a248dda0131e8ad, https://usegalaxy.eu/published/workflow?id=8af41219411062ad, https://usegalaxy.eu/published/workflow?id=8b00eb89132be02f, https://usegalaxy.eu/published/workflow?id=8b7de28980c455ce, https://usegalaxy.eu/published/workflow?id=8bc1c3b9e665ea37, https://usegalaxy.eu/published/workflow?id=8be366ad6a42408b, https://usegalaxy.eu/published/workflow?id=8c4331f1bac67aba, https://usegalaxy.eu/published/workflow?id=8c44228d11782e61, https://usegalaxy.eu/published/workflow?id=8c6371b360217f72, https://usegalaxy.eu/published/workflow?id=8c7958cb05fba814, https://usegalaxy.eu/published/workflow?id=8c7e972020799d57, https://usegalaxy.eu/published/workflow?id=8d00a8b70b0c019c, https://usegalaxy.eu/published/workflow?id=8d64614d1971065a, https://usegalaxy.eu/published/workflow?id=8deb08d4f228e198, https://usegalaxy.eu/published/workflow?id=8e92a65d3307d87e, https://usegalaxy.eu/published/workflow?id=8eeff1c78f84731a, https://usegalaxy.eu/published/workflow?id=8f105de48f7f1d9d, https://usegalaxy.eu/published/workflow?id=8f415b0c409f56f7, https://usegalaxy.eu/published/workflow?id=8f677efac7100097, https://usegalaxy.eu/published/workflow?id=8f747dbff3216993, https://usegalaxy.eu/published/workflow?id=8f9bbda01c59673d, https://usegalaxy.eu/published/workflow?id=8f9dc5ba61a02815, https://usegalaxy.eu/published/workflow?id=8fb156020285e049, https://usegalaxy.eu/published/workflow?id=8ff9d3ad20e87819, https://usegalaxy.eu/published/workflow?id=9000d8f4fbdcacf7, https://usegalaxy.eu/published/workflow?id=9019642fcce59ae2, https://usegalaxy.eu/published/workflow?id=90643b0ad5e61ba5, https://usegalaxy.eu/published/workflow?id=90f993a1b245eb68, https://usegalaxy.eu/published/workflow?id=912b81c444e35045, https://usegalaxy.eu/published/workflow?id=9155ed0e7a6a7b60, https://usegalaxy.eu/published/workflow?id=915ffef5b14c871e, https://usegalaxy.eu/published/workflow?id=921cab3e6faf30be, https://usegalaxy.eu/published/workflow?id=92760fc19ef120ce, https://usegalaxy.eu/published/workflow?id=92dafb3d1c06e074, https://usegalaxy.eu/published/workflow?id=930a9757252d3ca6, https://usegalaxy.eu/published/workflow?id=937fa7f2f83bb735, https://usegalaxy.eu/published/workflow?id=9382f9bbbdddb5ad, https://usegalaxy.eu/published/workflow?id=93a7047396080fda, https://usegalaxy.eu/published/workflow?id=9472be79da012999, https://usegalaxy.eu/published/workflow?id=94b9287365ea4d0d, https://usegalaxy.eu/published/workflow?id=94bbf8fa7c1f030d, https://usegalaxy.eu/published/workflow?id=9588311136ac8794, https://usegalaxy.eu/published/workflow?id=95c4d5549e820d88, https://usegalaxy.eu/published/workflow?id=95cb04ffb473623b, https://usegalaxy.eu/published/workflow?id=95f420d8856bf725, https://usegalaxy.eu/published/workflow?id=96158fee05bbca5f, https://usegalaxy.eu/published/workflow?id=9667bf36217083b7, https://usegalaxy.eu/published/workflow?id=96b75a7373a58aae, https://usegalaxy.eu/published/workflow?id=972db4abc51bb3ab, https://usegalaxy.eu/published/workflow?id=985044b4b2c51425, https://usegalaxy.eu/published/workflow?id=987a2abb5cd56e57, https://usegalaxy.eu/published/workflow?id=98bfad0c684011e9, https://usegalaxy.eu/published/workflow?id=9953f2d313643f2b, https://usegalaxy.eu/published/workflow?id=99c7ec2841af3a20, https://usegalaxy.eu/published/workflow?id=9a0275211e74698a, https://usegalaxy.eu/published/workflow?id=9a52516ec0b539ea, https://usegalaxy.eu/published/workflow?id=9a657909d6191203, https://usegalaxy.eu/published/workflow?id=9aa290ce1927d700, https://usegalaxy.eu/published/workflow?id=9ac51f1eeaff5e9c, https://usegalaxy.eu/published/workflow?id=9ad5aff92e185907, https://usegalaxy.eu/published/workflow?id=9b025479fade745d, https://usegalaxy.eu/published/workflow?id=9ba580ba8b01db40, https://usegalaxy.eu/published/workflow?id=9bafb4701a4c0426, https://usegalaxy.eu/published/workflow?id=9c0b67496dfe52b2, https://usegalaxy.eu/published/workflow?id=9c24df68dc7d25a4, https://usegalaxy.eu/published/workflow?id=9c5a0596956064a6, https://usegalaxy.eu/published/workflow?id=9c7a218993788493, https://usegalaxy.eu/published/workflow?id=9d201cde241cdd64, https://usegalaxy.eu/published/workflow?id=9d209bcdae1a475e, https://usegalaxy.eu/published/workflow?id=9d888cef61f5072f, https://usegalaxy.eu/published/workflow?id=9da26c5131603b9f, https://usegalaxy.eu/published/workflow?id=9e05bd65faf58ab3, https://usegalaxy.eu/published/workflow?id=9e497c5c9e64d9b3, https://usegalaxy.eu/published/workflow?id=9e4df2893767591a, https://usegalaxy.eu/published/workflow?id=9eb29cc96d8d75c2, https://usegalaxy.eu/published/workflow?id=9edd9ccffe6f4c59, https://usegalaxy.eu/published/workflow?id=9f2d18f0d0896e8b, https://usegalaxy.eu/published/workflow?id=9f3a6237aa09f3cb, https://usegalaxy.eu/published/workflow?id=9fddc44294236e8f, https://usegalaxy.eu/published/workflow?id=9feebfc6c34da287, https://usegalaxy.eu/published/workflow?id=a018307be3563f28, https://usegalaxy.eu/published/workflow?id=a08279c2a305afff, https://usegalaxy.eu/published/workflow?id=a15dabcadb63b46d, https://usegalaxy.eu/published/workflow?id=a18615f77ed3f371, https://usegalaxy.eu/published/workflow?id=a2284469005518e1, https://usegalaxy.eu/published/workflow?id=a28c207730e7e13d, https://usegalaxy.eu/published/workflow?id=a2d4221ad117c378, https://usegalaxy.eu/published/workflow?id=a2daeb488bee0152, https://usegalaxy.eu/published/workflow?id=a2f36d4dd48d8ec2, https://usegalaxy.eu/published/workflow?id=a31100610fba17a1, https://usegalaxy.eu/published/workflow?id=a37d1e0db16cfb67, https://usegalaxy.eu/published/workflow?id=a3da32b6b45da639, https://usegalaxy.eu/published/workflow?id=a3f082ff30357040, https://usegalaxy.eu/published/workflow?id=a403c661bf1bc4fa, https://usegalaxy.eu/published/workflow?id=a53f78aa6866b811, https://usegalaxy.eu/published/workflow?id=a5ca8b9807ed3f73, https://usegalaxy.eu/published/workflow?id=a6290cdfa12d34ad, https://usegalaxy.eu/published/workflow?id=a639ea0419de1078, https://usegalaxy.eu/published/workflow?id=a6a36943accc9b7d, https://usegalaxy.eu/published/workflow?id=a6dd62ab4b9a0725, https://usegalaxy.eu/published/workflow?id=a6f4371ef9bc1aab, https://usegalaxy.eu/published/workflow?id=a72e3cb6eb656102, https://usegalaxy.eu/published/workflow?id=a7638e7f908fd90d, https://usegalaxy.eu/published/workflow?id=a76629eccfdeafb8, https://usegalaxy.eu/published/workflow?id=a7a6d8ecc2795f58, https://usegalaxy.eu/published/workflow?id=a7ae5dbedf55c7d6, https://usegalaxy.eu/published/workflow?id=a7f2835a74bdf10c, https://usegalaxy.eu/published/workflow?id=a9469155eee12ff1, https://usegalaxy.eu/published/workflow?id=aa5b077da1d36b23, https://usegalaxy.eu/published/workflow?id=aa66e0f92b2ea038, https://usegalaxy.eu/published/workflow?id=aa6dc57f5c67fb4b, https://usegalaxy.eu/published/workflow?id=ab89c61db3d7abbb, https://usegalaxy.eu/published/workflow?id=abd1cb3457338eb5, https://usegalaxy.eu/published/workflow?id=ac6eb99f70d35999, https://usegalaxy.eu/published/workflow?id=acb9131e84de1ae0, https://usegalaxy.eu/published/workflow?id=ada52ba09b462567, https://usegalaxy.eu/published/workflow?id=adc6d049e9283789, https://usegalaxy.eu/published/workflow?id=ade6f36f6a035a73, https://usegalaxy.eu/published/workflow?id=ae16643c04ad1216, https://usegalaxy.eu/published/workflow?id=ae380023cd06f640, https://usegalaxy.eu/published/workflow?id=ae74f60cd20d56bc, https://usegalaxy.eu/published/workflow?id=aef62f4d0bba003b, https://usegalaxy.eu/published/workflow?id=af30010868c97316, https://usegalaxy.eu/published/workflow?id=af472984b3f3d65f, https://usegalaxy.eu/published/workflow?id=af7926dfd0f3501c, https://usegalaxy.eu/published/workflow?id=afb138fc03ca61a8, https://usegalaxy.eu/published/workflow?id=b0377f05f97b18b1, https://usegalaxy.eu/published/workflow?id=b14845359b702444, https://usegalaxy.eu/published/workflow?id=b1d1694b95ed10e1, https://usegalaxy.eu/published/workflow?id=b211fceaecf41c9e, https://usegalaxy.eu/published/workflow?id=b287bb779cf686ef, https://usegalaxy.eu/published/workflow?id=b323867a9efcc6c6, https://usegalaxy.eu/published/workflow?id=b351b297ac7d923f, https://usegalaxy.eu/published/workflow?id=b3c0eba755f269b2, https://usegalaxy.eu/published/workflow?id=b402aee2dc424569, https://usegalaxy.eu/published/workflow?id=b4642b1e0985f76b, https://usegalaxy.eu/published/workflow?id=b46b51b2860b63d5, https://usegalaxy.eu/published/workflow?id=b4948afacccfefdb, https://usegalaxy.eu/published/workflow?id=b4bf9e3309d53af3, https://usegalaxy.eu/published/workflow?id=b4ed2a3690da0196, https://usegalaxy.eu/published/workflow?id=b51559006f86db9e, https://usegalaxy.eu/published/workflow?id=b57c3522bdd7c2d5, https://usegalaxy.eu/published/workflow?id=b5de94e9cde071ab, https://usegalaxy.eu/published/workflow?id=b5e3360f933d1950, https://usegalaxy.eu/published/workflow?id=b619339f4e1c6fdf, https://usegalaxy.eu/published/workflow?id=b6457cb04bf31613, https://usegalaxy.eu/published/workflow?id=b681f7b677b23168, https://usegalaxy.eu/published/workflow?id=b77e3b08092fa73e, https://usegalaxy.eu/published/workflow?id=b7a3cbcd32734e8b, https://usegalaxy.eu/published/workflow?id=b84fd6a0e2632ad9, https://usegalaxy.eu/published/workflow?id=b86f3775aa1f13bc, https://usegalaxy.eu/published/workflow?id=b89ce83b1121c95a, https://usegalaxy.eu/published/workflow?id=b8baade87e733fce, https://usegalaxy.eu/published/workflow?id=b97532c398b821a2, https://usegalaxy.eu/published/workflow?id=b9ad204395f7d931, https://usegalaxy.eu/published/workflow?id=ba3a5d59b3879764, https://usegalaxy.eu/published/workflow?id=bac84a7033c3423f, https://usegalaxy.eu/published/workflow?id=bace9aebab9d4ce3, https://usegalaxy.eu/published/workflow?id=bc32937d505135ab, https://usegalaxy.eu/published/workflow?id=bc87309a8763d0b4, https://usegalaxy.eu/published/workflow?id=bc8ccd13a07bd9ec, https://usegalaxy.eu/published/workflow?id=bcf99cc0469db276, https://usegalaxy.eu/published/workflow?id=bebcbd6f0ffa55c5, https://usegalaxy.eu/published/workflow?id=bef0a7d604f2ebef, https://usegalaxy.eu/published/workflow?id=bf655ab3dc6fd76a, https://usegalaxy.eu/published/workflow?id=bf99d06567288766, https://usegalaxy.eu/published/workflow?id=c084c2009f6b2d0a, https://usegalaxy.eu/published/workflow?id=c0d1e965daf89006, https://usegalaxy.eu/published/workflow?id=c32d178e6c8e31bd, https://usegalaxy.eu/published/workflow?id=c38e3ac59d8b86d6, https://usegalaxy.eu/published/workflow?id=c39a79bb45b2566e, https://usegalaxy.eu/published/workflow?id=c3a11e1ac1aa8383, https://usegalaxy.eu/published/workflow?id=c3eba26c5d7febff, https://usegalaxy.eu/published/workflow?id=c4119ea7ffd29094, https://usegalaxy.eu/published/workflow?id=c4327bccfa623f7e, https://usegalaxy.eu/published/workflow?id=c4c2e669b86cffbc, https://usegalaxy.eu/published/workflow?id=c4fa05e209a2f082, https://usegalaxy.eu/published/workflow?id=c4fc3adf8f7ff2bc, https://usegalaxy.eu/published/workflow?id=c508c00e81018dd8, https://usegalaxy.eu/published/workflow?id=c5de0b794849e1b1, https://usegalaxy.eu/published/workflow?id=c5e6047b3b256b06, https://usegalaxy.eu/published/workflow?id=c6b22fc33b569c8f, https://usegalaxy.eu/published/workflow?id=c6ca9e6fd28979f8, https://usegalaxy.eu/published/workflow?id=c7026cd5578c8678, https://usegalaxy.eu/published/workflow?id=c750484145c9903b, https://usegalaxy.eu/published/workflow?id=c789ab71876c6ead, https://usegalaxy.eu/published/workflow?id=c7a8f7aabc219831, https://usegalaxy.eu/published/workflow?id=c7b9fb6872444809, https://usegalaxy.eu/published/workflow?id=c7f34c67c9054234, https://usegalaxy.eu/published/workflow?id=c8bc4af6dd3b5d02, https://usegalaxy.eu/published/workflow?id=c8d70d4402852fb5, https://usegalaxy.eu/published/workflow?id=c8f94a2e838fc0f1, https://usegalaxy.eu/published/workflow?id=c917db7d7ba7ea6f, https://usegalaxy.eu/published/workflow?id=c9423228df977254, https://usegalaxy.eu/published/workflow?id=c98a14fcf5998159, https://usegalaxy.eu/published/workflow?id=c9aff55e39e195e3, https://usegalaxy.eu/published/workflow?id=c9f83ce86d407902, https://usegalaxy.eu/published/workflow?id=ca286c2fdc71e960, https://usegalaxy.eu/published/workflow?id=ca39822372847670, https://usegalaxy.eu/published/workflow?id=cab2aa791a814d55, https://usegalaxy.eu/published/workflow?id=caba6d3d7db648e9, https://usegalaxy.eu/published/workflow?id=caf4fb725880a5a8, https://usegalaxy.eu/published/workflow?id=cb2df493f5e334f7, https://usegalaxy.eu/published/workflow?id=cb3d961914ede12e, https://usegalaxy.eu/published/workflow?id=cb978151b1686b71, https://usegalaxy.eu/published/workflow?id=cbe3769f1abb9fa5, https://usegalaxy.eu/published/workflow?id=cc385bd4376a907c, https://usegalaxy.eu/published/workflow?id=ccda8222900499a7, https://usegalaxy.eu/published/workflow?id=ccef778cfd9024d1, https://usegalaxy.eu/published/workflow?id=cd25f70f71683ab6, https://usegalaxy.eu/published/workflow?id=cd675ab32d3e7833, https://usegalaxy.eu/published/workflow?id=cda516957bcfcd9c, https://usegalaxy.eu/published/workflow?id=cde27d06b74ad2fd, https://usegalaxy.eu/published/workflow?id=cdf2f02428f5f83f, https://usegalaxy.eu/published/workflow?id=cdf677a621166238, https://usegalaxy.eu/published/workflow?id=ce1712139b4a4273, https://usegalaxy.eu/published/workflow?id=ce5c16ac23c4fbb1, https://usegalaxy.eu/published/workflow?id=ce5c9287a67e6085, https://usegalaxy.eu/published/workflow?id=cf0159c14418525e, https://usegalaxy.eu/published/workflow?id=cfd37e9e307e5d3d, https://usegalaxy.eu/published/workflow?id=cfe47f0c78ed5ec4, https://usegalaxy.eu/published/workflow?id=d02458f1d7d9c3f4, https://usegalaxy.eu/published/workflow?id=d05c6f0f3205fbd2, https://usegalaxy.eu/published/workflow?id=d07fe8b5a045c176, https://usegalaxy.eu/published/workflow?id=d0a809f0880d7ec0, https://usegalaxy.eu/published/workflow?id=d0ae255151450dad, https://usegalaxy.eu/published/workflow?id=d0d6dae0d1eecc21, https://usegalaxy.eu/published/workflow?id=d0e062aee910086a, https://usegalaxy.eu/published/workflow?id=d12617d0df5f81d0, https://usegalaxy.eu/published/workflow?id=d1357759d0962144, https://usegalaxy.eu/published/workflow?id=d172f927a489e9f8, https://usegalaxy.eu/published/workflow?id=d17d6029914d666b, https://usegalaxy.eu/published/workflow?id=d1a1e6070c0a36ca, https://usegalaxy.eu/published/workflow?id=d1b3b62e7f91e217, https://usegalaxy.eu/published/workflow?id=d1bd5d8597c1d31d, https://usegalaxy.eu/published/workflow?id=d215a2e554fd83bc, https://usegalaxy.eu/published/workflow?id=d261bbd05889ce75, https://usegalaxy.eu/published/workflow?id=d2a9d4eb5b3c72a2, https://usegalaxy.eu/published/workflow?id=d2ef6d4a2189c0a6, https://usegalaxy.eu/published/workflow?id=d33ab07e4cf44f8c, https://usegalaxy.eu/published/workflow?id=d3494c6124f820b2, https://usegalaxy.eu/published/workflow?id=d3edc3f0659a5e5b, https://usegalaxy.eu/published/workflow?id=d4d8e907e26c8587, https://usegalaxy.eu/published/workflow?id=d55df785d4c71876, https://usegalaxy.eu/published/workflow?id=d57d41e306241396, https://usegalaxy.eu/published/workflow?id=d5cf994c03a60fa4, https://usegalaxy.eu/published/workflow?id=d5f5be2c96f9e797, https://usegalaxy.eu/published/workflow?id=d649ec485c4b3994, https://usegalaxy.eu/published/workflow?id=d67299c34e63f3d9, https://usegalaxy.eu/published/workflow?id=d6809603f46de1b3, https://usegalaxy.eu/published/workflow?id=d6f7e86d52d43555, https://usegalaxy.eu/published/workflow?id=d6ff6be33b8bfe85, https://usegalaxy.eu/published/workflow?id=d768c0e0df4d432e, https://usegalaxy.eu/published/workflow?id=d83280cd72ec0f33, https://usegalaxy.eu/published/workflow?id=d87fc6685e47d27d, https://usegalaxy.eu/published/workflow?id=d924fafd8e042952, https://usegalaxy.eu/published/workflow?id=d9535e4afec8866b, https://usegalaxy.eu/published/workflow?id=da19c0eaa757fa39, https://usegalaxy.eu/published/workflow?id=db03a18167f26399, https://usegalaxy.eu/published/workflow?id=db270d0eb035609e, https://usegalaxy.eu/published/workflow?id=dc27453c438577f6, https://usegalaxy.eu/published/workflow?id=dd73bdcbac8649a3, https://usegalaxy.eu/published/workflow?id=dd8b55e7768843b1, https://usegalaxy.eu/published/workflow?id=ddced7b107e4707a, https://usegalaxy.eu/published/workflow?id=de9003e589631029, https://usegalaxy.eu/published/workflow?id=de9cf573314f416c, https://usegalaxy.eu/published/workflow?id=df08e520ec3dbcb7, https://usegalaxy.eu/published/workflow?id=dfc2c53ac3103eff, https://usegalaxy.eu/published/workflow?id=e04be1ab5a16eb9f, https://usegalaxy.eu/published/workflow?id=e0dddc2579c3614e, https://usegalaxy.eu/published/workflow?id=e138640778b7414c, https://usegalaxy.eu/published/workflow?id=e14b81a8c0b1b7a4, https://usegalaxy.eu/published/workflow?id=e2391c40d24d403f, https://usegalaxy.eu/published/workflow?id=e271d95a671182ec, https://usegalaxy.eu/published/workflow?id=e3165c295bc243e4, https://usegalaxy.eu/published/workflow?id=e3b0b521ee8f2aef, https://usegalaxy.eu/published/workflow?id=e472096116cbe392, https://usegalaxy.eu/published/workflow?id=e4dabaf57668dbd1, https://usegalaxy.eu/published/workflow?id=e71a3c5ca3c31df1, https://usegalaxy.eu/published/workflow?id=e73beff62f35d677, https://usegalaxy.eu/published/workflow?id=e795e7f59b4de5e6, https://usegalaxy.eu/published/workflow?id=e7aebe58411d97ed, https://usegalaxy.eu/published/workflow?id=e7e26967cf6cb8d8, https://usegalaxy.eu/published/workflow?id=e82ce9cfdee29b55, https://usegalaxy.eu/published/workflow?id=e8a8c0b59ba9d593, https://usegalaxy.eu/published/workflow?id=e8f9e1d911683b22, https://usegalaxy.eu/published/workflow?id=e91def3fc9738ebb, https://usegalaxy.eu/published/workflow?id=e935d2c8ffb52588, https://usegalaxy.eu/published/workflow?id=ea3b120f105434ec, https://usegalaxy.eu/published/workflow?id=ea8bb8eefdb4ba7a, https://usegalaxy.eu/published/workflow?id=ead0f264798f9418, https://usegalaxy.eu/published/workflow?id=eb03839cc36048f5, https://usegalaxy.eu/published/workflow?id=eb54512829d8509c, https://usegalaxy.eu/published/workflow?id=eb9a53e6062162fb, https://usegalaxy.eu/published/workflow?id=ebbf5cfa946d11d3, https://usegalaxy.eu/published/workflow?id=ec0d89aa1e6674e4, https://usegalaxy.eu/published/workflow?id=ec6b2c926fffab5f, https://usegalaxy.eu/published/workflow?id=ec79f14ab91cd933, https://usegalaxy.eu/published/workflow?id=ed20bd120064bab0, https://usegalaxy.eu/published/workflow?id=edbdbe7aa21ceba0, https://usegalaxy.eu/published/workflow?id=ee6dc47660540ba6, https://usegalaxy.eu/published/workflow?id=ef1d11b79a2e1727, https://usegalaxy.eu/published/workflow?id=ef6556d65ce5d72c, https://usegalaxy.eu/published/workflow?id=f05754467a439134, https://usegalaxy.eu/published/workflow?id=f08b29e4cef76cd5, https://usegalaxy.eu/published/workflow?id=f14ebad1c3c20067, https://usegalaxy.eu/published/workflow?id=f1ca4289ee4f67bb, https://usegalaxy.eu/published/workflow?id=f28459c5b16549b7, https://usegalaxy.eu/published/workflow?id=f30c8054f064ac9f, https://usegalaxy.eu/published/workflow?id=f38745208494d4ab, https://usegalaxy.eu/published/workflow?id=f3e17c8dd80def27, https://usegalaxy.eu/published/workflow?id=f4a55ef0d4c2cd97, https://usegalaxy.eu/published/workflow?id=f5005e80d9ffa109, https://usegalaxy.eu/published/workflow?id=f578a097b4339025, https://usegalaxy.eu/published/workflow?id=f5798b2f5aeccf9f, https://usegalaxy.eu/published/workflow?id=f58526da1fd68108, https://usegalaxy.eu/published/workflow?id=f5be5bcf9b9f171c, https://usegalaxy.eu/published/workflow?id=f63127675a07e00a, https://usegalaxy.eu/published/workflow?id=f689faf267fbe504, https://usegalaxy.eu/published/workflow?id=f698bed6a0867f5f, https://usegalaxy.eu/published/workflow?id=f6a625946dea60fa, https://usegalaxy.eu/published/workflow?id=f6a763951d815944, https://usegalaxy.eu/published/workflow?id=f6b55599db1ab056, https://usegalaxy.eu/published/workflow?id=f6bd10486a0ba17d, https://usegalaxy.eu/published/workflow?id=f71ab313c4e7a25c, https://usegalaxy.eu/published/workflow?id=f774cf05ddff3612, https://usegalaxy.eu/published/workflow?id=f7a7c72489d6b3d4, https://usegalaxy.eu/published/workflow?id=f7cdaf862e6599c0, https://usegalaxy.eu/published/workflow?id=f882d14fc5dabbb9, https://usegalaxy.eu/published/workflow?id=f91245e580319e65, https://usegalaxy.eu/published/workflow?id=f98560da584d5abf, https://usegalaxy.eu/published/workflow?id=f98f0e0c18222cc0, https://usegalaxy.eu/published/workflow?id=f9b705e53b6d6539, https://usegalaxy.eu/published/workflow?id=fa0ff9a0db8bbddb, https://usegalaxy.eu/published/workflow?id=fa53b172def3fe75, https://usegalaxy.eu/published/workflow?id=fa83e26e05418370, https://usegalaxy.eu/published/workflow?id=fb015e398373ea8a, https://usegalaxy.eu/published/workflow?id=fb425d6accf3ca55, https://usegalaxy.eu/published/workflow?id=fb806b88850f3427, https://usegalaxy.eu/published/workflow?id=fba1671d835b6dd3, https://usegalaxy.eu/published/workflow?id=fc0b9efa7d2e61e6, https://usegalaxy.eu/published/workflow?id=fc216dfb0ec9ed41, https://usegalaxy.eu/published/workflow?id=fc25c1f8c6667c87, https://usegalaxy.eu/published/workflow?id=fc42cc9467c6ee8d, https://usegalaxy.eu/published/workflow?id=fcf745185d6e0ea4, https://usegalaxy.eu/published/workflow?id=fd6429a788660c8d, https://usegalaxy.eu/published/workflow?id=fd649ac4d4872c81, https://usegalaxy.eu/published/workflow?id=fd97c08fdaa6a5eb, https://usegalaxy.eu/published/workflow?id=fdca6c9d394986bf, https://usegalaxy.eu/published/workflow?id=fdd60d4121673f62, https://usegalaxy.eu/published/workflow?id=fe0cf1fa5055d4e1, https://usegalaxy.eu/published/workflow?id=fe64d430d50faf0b, https://usegalaxy.eu/published/workflow?id=fed55dc53c5325ff, https://usegalaxy.eu/published/workflow?id=feeb1fa358ccf328, https://usegalaxy.eu/published/workflow?id=ff2fd4a4bb27d859, https://usegalaxy.fr/published/workflow?id=19e99a5c09c01bb7, https://usegalaxy.fr/published/workflow?id=2345fad7dac13daa, https://usegalaxy.fr/published/workflow?id=267af6c99eea4fff, https://usegalaxy.fr/published/workflow?id=2689019758f56c05, https://usegalaxy.fr/published/workflow?id=27682f0045c41ebf, https://usegalaxy.fr/published/workflow?id=4ec0bc782472fa10, https://usegalaxy.fr/published/workflow?id=5083dccc00274ac1, https://usegalaxy.fr/published/workflow?id=591c57173e259ca6, https://usegalaxy.fr/published/workflow?id=5ec6d378e60f7ccc, https://usegalaxy.fr/published/workflow?id=61235264d5d2f666, https://usegalaxy.fr/published/workflow?id=65ab28829a1f9803, https://usegalaxy.fr/published/workflow?id=727cfdb7c79287d1, https://usegalaxy.fr/published/workflow?id=798c8ff19825ab2c, https://usegalaxy.fr/published/workflow?id=7d27dd394b921846, https://usegalaxy.fr/published/workflow?id=7ebb54181b404733, https://usegalaxy.fr/published/workflow?id=80c1ec9c609e79ef, https://usegalaxy.fr/published/workflow?id=98529cff0ef36b91, https://usegalaxy.fr/published/workflow?id=b131218bec7eacb4, https://usegalaxy.fr/published/workflow?id=b168a179d1b456cb, https://usegalaxy.fr/published/workflow?id=c4f6062e51d0f45e, https://usegalaxy.fr/published/workflow?id=c7be6e229a045fad, https://usegalaxy.fr/published/workflow?id=ce4acd38084ee9ef, https://usegalaxy.fr/published/workflow?id=d0d12c0b80c286f9, https://usegalaxy.fr/published/workflow?id=d425a77157cae2ee, https://usegalaxy.fr/published/workflow?id=e0b225d4b2556365, https://usegalaxy.fr/published/workflow?id=e3c04a30258421aa, https://usegalaxy.fr/published/workflow?id=fd733565098d76c9, https://usegalaxy.org.au/published/workflow?id=000c2f1884bc4687, https://usegalaxy.org.au/published/workflow?id=02eebe3d909206ab, https://usegalaxy.org.au/published/workflow?id=02f2a556e77eed14, https://usegalaxy.org.au/published/workflow?id=04ab43fb3e7840ef, https://usegalaxy.org.au/published/workflow?id=04c9266c6a863fab, https://usegalaxy.org.au/published/workflow?id=04f6ad62f34313ea, https://usegalaxy.org.au/published/workflow?id=053c054592b08dce, https://usegalaxy.org.au/published/workflow?id=05e4ef85cbf0dc20, https://usegalaxy.org.au/published/workflow?id=06564b19b0655c19, https://usegalaxy.org.au/published/workflow?id=07c97b9e59c0218f, https://usegalaxy.org.au/published/workflow?id=0810be3d7d2b0322, https://usegalaxy.org.au/published/workflow?id=084bb76cf47d7060, https://usegalaxy.org.au/published/workflow?id=08f53503bfb0f421, https://usegalaxy.org.au/published/workflow?id=08fac3b4c128e597, https://usegalaxy.org.au/published/workflow?id=094655df3ccd0b00, https://usegalaxy.org.au/published/workflow?id=094a545d44ce28cc, https://usegalaxy.org.au/published/workflow?id=09f0170639c978e8, https://usegalaxy.org.au/published/workflow?id=0aa316f8c6cff444, https://usegalaxy.org.au/published/workflow?id=0af0ea50f1237952, https://usegalaxy.org.au/published/workflow?id=0b0957d7cbab16c0, https://usegalaxy.org.au/published/workflow?id=0c11e1ba5e8fa21b, https://usegalaxy.org.au/published/workflow?id=0c6f7bfc826433c4, https://usegalaxy.org.au/published/workflow?id=0cc8c8875df6bccb, https://usegalaxy.org.au/published/workflow?id=0dbb85f727302a72, https://usegalaxy.org.au/published/workflow?id=0df25e2dbd5e8ed5, https://usegalaxy.org.au/published/workflow?id=0dff588f31f1dfd6, https://usegalaxy.org.au/published/workflow?id=0e11619979c2830c, https://usegalaxy.org.au/published/workflow?id=0ebaaecf61dfc921, https://usegalaxy.org.au/published/workflow?id=0edb9c8b767fa74b, https://usegalaxy.org.au/published/workflow?id=0f01e24e6c33a834, https://usegalaxy.org.au/published/workflow?id=0f7406ada6706c91, https://usegalaxy.org.au/published/workflow?id=102eb726f63f3190, https://usegalaxy.org.au/published/workflow?id=10355b2680374a03, https://usegalaxy.org.au/published/workflow?id=109f0c68e617e104, https://usegalaxy.org.au/published/workflow?id=142e5f7c1f340838, https://usegalaxy.org.au/published/workflow?id=14b17f17d03c8424, https://usegalaxy.org.au/published/workflow?id=157e7614ae18849b, https://usegalaxy.org.au/published/workflow?id=16c6c253e009cc0d, https://usegalaxy.org.au/published/workflow?id=16f4846b4d6bc155, https://usegalaxy.org.au/published/workflow?id=1727d16fa4dec19c, https://usegalaxy.org.au/published/workflow?id=1764bb1f506212e8, https://usegalaxy.org.au/published/workflow?id=1782d699b0166725, https://usegalaxy.org.au/published/workflow?id=18d48f1b26811372, https://usegalaxy.org.au/published/workflow?id=1905ec04d5841f09, https://usegalaxy.org.au/published/workflow?id=19e3488987d58d73, https://usegalaxy.org.au/published/workflow?id=1b3c4c9b1ab8032d, https://usegalaxy.org.au/published/workflow?id=1ce2a725df3adb74, https://usegalaxy.org.au/published/workflow?id=1d1c2589f94fc4df, https://usegalaxy.org.au/published/workflow?id=1dcc1b25c9091fbf, https://usegalaxy.org.au/published/workflow?id=1eb3e1452c672480, https://usegalaxy.org.au/published/workflow?id=1f49c65625b9d2de, https://usegalaxy.org.au/published/workflow?id=1ff259845498b818, https://usegalaxy.org.au/published/workflow?id=20e5e6b233ffb951, https://usegalaxy.org.au/published/workflow?id=218ffb4438833bdd, https://usegalaxy.org.au/published/workflow?id=2249ab6710f5e84d, https://usegalaxy.org.au/published/workflow?id=2356584eac7fa234, https://usegalaxy.org.au/published/workflow?id=244ea5e94237ebad, https://usegalaxy.org.au/published/workflow?id=2470cb61ba51288c, https://usegalaxy.org.au/published/workflow?id=252baad4e5ade6bc, https://usegalaxy.org.au/published/workflow?id=2543e425fa6d5144, https://usegalaxy.org.au/published/workflow?id=2617fee24459e680, https://usegalaxy.org.au/published/workflow?id=2789fb3590727342, https://usegalaxy.org.au/published/workflow?id=28705b86e0595ded, https://usegalaxy.org.au/published/workflow?id=28cf646b95e4d3ab, https://usegalaxy.org.au/published/workflow?id=2980172ed0226b59, https://usegalaxy.org.au/published/workflow?id=2b2ce7e1206d177d, https://usegalaxy.org.au/published/workflow?id=2d45d7138d8715b4, https://usegalaxy.org.au/published/workflow?id=2df1d32f78974528, https://usegalaxy.org.au/published/workflow?id=2f520cb446adf726, https://usegalaxy.org.au/published/workflow?id=2fc7d396ef610ed8, https://usegalaxy.org.au/published/workflow?id=2fee25e188531691, https://usegalaxy.org.au/published/workflow?id=319e9d693fac8dce, https://usegalaxy.org.au/published/workflow?id=3223ceaa2b58d940, https://usegalaxy.org.au/published/workflow?id=328adfa7d90b1d54, https://usegalaxy.org.au/published/workflow?id=32d28f800adcea42, https://usegalaxy.org.au/published/workflow?id=3604307ec2835628, https://usegalaxy.org.au/published/workflow?id=36f54eda8568355d, https://usegalaxy.org.au/published/workflow?id=371c9892d261cee2, https://usegalaxy.org.au/published/workflow?id=383ce49fa7a367e9, https://usegalaxy.org.au/published/workflow?id=3b6e9f03b088bf01, https://usegalaxy.org.au/published/workflow?id=3c657dd766d02f6a, https://usegalaxy.org.au/published/workflow?id=3d47e0de658b3304, https://usegalaxy.org.au/published/workflow?id=3df7f45b7b388f8c, https://usegalaxy.org.au/published/workflow?id=3e7fcfd23872ad0d, https://usegalaxy.org.au/published/workflow?id=4047f9f242542716, https://usegalaxy.org.au/published/workflow?id=40666ceb68d101ac, https://usegalaxy.org.au/published/workflow?id=40740c32b9a550c9, https://usegalaxy.org.au/published/workflow?id=410d0d19b6589c78, https://usegalaxy.org.au/published/workflow?id=41282d51f9112552, https://usegalaxy.org.au/published/workflow?id=41795303a88d9e94, https://usegalaxy.org.au/published/workflow?id=41e005d4ebb5885a, https://usegalaxy.org.au/published/workflow?id=4267bd1e4cfd1901, https://usegalaxy.org.au/published/workflow?id=434127690544d0e9, https://usegalaxy.org.au/published/workflow?id=43a951ec514498f6, https://usegalaxy.org.au/published/workflow?id=446ba22c3d2f3367, https://usegalaxy.org.au/published/workflow?id=455e68f185fec41b, https://usegalaxy.org.au/published/workflow?id=462beb964c99619d, https://usegalaxy.org.au/published/workflow?id=466809eb3392f7fb, https://usegalaxy.org.au/published/workflow?id=47ce6a2d30887637, https://usegalaxy.org.au/published/workflow?id=4871f853090e8be8, https://usegalaxy.org.au/published/workflow?id=48a25f8e58d068e6, https://usegalaxy.org.au/published/workflow?id=48a60965b6b3ff54, https://usegalaxy.org.au/published/workflow?id=499245b3a113e06d, https://usegalaxy.org.au/published/workflow?id=4a7f22081ecde089, https://usegalaxy.org.au/published/workflow?id=4bc8ac41ecff7daf, https://usegalaxy.org.au/published/workflow?id=4bd6c5c12fb1a69a, https://usegalaxy.org.au/published/workflow?id=4c7e0703aace6aa3, https://usegalaxy.org.au/published/workflow?id=4cb69c84b73ea9dd, https://usegalaxy.org.au/published/workflow?id=4e7930c7286c6e9e, https://usegalaxy.org.au/published/workflow?id=4ea1049371de111c, https://usegalaxy.org.au/published/workflow?id=4ebf1297793870e7, https://usegalaxy.org.au/published/workflow?id=518d27f68e05a356, https://usegalaxy.org.au/published/workflow?id=51bad198f1fd1215, https://usegalaxy.org.au/published/workflow?id=52056336f24eccf6, https://usegalaxy.org.au/published/workflow?id=5314a7a4732a0ef1, https://usegalaxy.org.au/published/workflow?id=543fb2d9431a7e13, https://usegalaxy.org.au/published/workflow?id=5550585ffc3d8d0e, https://usegalaxy.org.au/published/workflow?id=56bda8e4b0018e03, https://usegalaxy.org.au/published/workflow?id=57b558e1a76c09e1, https://usegalaxy.org.au/published/workflow?id=5a4e49ef8693d7c4, https://usegalaxy.org.au/published/workflow?id=5a975438c8752269, https://usegalaxy.org.au/published/workflow?id=5b0c0e34394afed1, https://usegalaxy.org.au/published/workflow?id=5cd804644a34c8fd, https://usegalaxy.org.au/published/workflow?id=5cd9b9338e75f254, https://usegalaxy.org.au/published/workflow?id=5cf5334877cc1297, https://usegalaxy.org.au/published/workflow?id=5cfea39918e8632d, https://usegalaxy.org.au/published/workflow?id=5ea74382fb77eb10, https://usegalaxy.org.au/published/workflow?id=5f4f874e49515555, https://usegalaxy.org.au/published/workflow?id=5fb44f257e445f56, https://usegalaxy.org.au/published/workflow?id=5fe66b29dcfb22ab, https://usegalaxy.org.au/published/workflow?id=60c0dec52cdca708, https://usegalaxy.org.au/published/workflow?id=63789b6f82172679, https://usegalaxy.org.au/published/workflow?id=65250d6b30d4bc7c, https://usegalaxy.org.au/published/workflow?id=6588e175004aba38, https://usegalaxy.org.au/published/workflow?id=66e530368fd40abd, https://usegalaxy.org.au/published/workflow?id=68b2961117e62890, https://usegalaxy.org.au/published/workflow?id=69233fb6edfcdde9, https://usegalaxy.org.au/published/workflow?id=6ab36c0d5b0d73e0, https://usegalaxy.org.au/published/workflow?id=6b1b0a945d367b4c, https://usegalaxy.org.au/published/workflow?id=6b2716309947836d, https://usegalaxy.org.au/published/workflow?id=6b3df543536faf8c, https://usegalaxy.org.au/published/workflow?id=6c1c11a81a2ab1b8, https://usegalaxy.org.au/published/workflow?id=6c27019d03dd49d8, https://usegalaxy.org.au/published/workflow?id=6c9129acb9d98afe, https://usegalaxy.org.au/published/workflow?id=6cdbcd1f667d0f16, https://usegalaxy.org.au/published/workflow?id=6de8899c40a90b98, https://usegalaxy.org.au/published/workflow?id=6dfbff6d74c0601b, https://usegalaxy.org.au/published/workflow?id=6e1e24f9e0326930, https://usegalaxy.org.au/published/workflow?id=6ec5728eec9c26d7, https://usegalaxy.org.au/published/workflow?id=6efcacf14bfc18b3, https://usegalaxy.org.au/published/workflow?id=6f0801fecbba5d3f, https://usegalaxy.org.au/published/workflow?id=6f76c43e6d2d7f74, https://usegalaxy.org.au/published/workflow?id=7028436ef03171cc, https://usegalaxy.org.au/published/workflow?id=7168c01be9997823, https://usegalaxy.org.au/published/workflow?id=75113a1b41904d2a, https://usegalaxy.org.au/published/workflow?id=7563b3ef697a69fd, https://usegalaxy.org.au/published/workflow?id=76a0a3af8de11622, https://usegalaxy.org.au/published/workflow?id=76bb6bde19975e05, https://usegalaxy.org.au/published/workflow?id=77b2fcf8c805ad5d, https://usegalaxy.org.au/published/workflow?id=781457327e644c7e, https://usegalaxy.org.au/published/workflow?id=7909da83448d8bf4, https://usegalaxy.org.au/published/workflow?id=79bf7b0f5e9052d7, https://usegalaxy.org.au/published/workflow?id=79ca45e45d76871f, https://usegalaxy.org.au/published/workflow?id=7a0b3968968c5994, https://usegalaxy.org.au/published/workflow?id=7a4ee63a04362967, https://usegalaxy.org.au/published/workflow?id=7a97e8ccc332c1e8, https://usegalaxy.org.au/published/workflow?id=7ad9410e36ee9ea1, https://usegalaxy.org.au/published/workflow?id=7c2e7b292803b3e9, https://usegalaxy.org.au/published/workflow?id=7cc2b5010c56f117, https://usegalaxy.org.au/published/workflow?id=7cd4fcc8e06ce4fd, https://usegalaxy.org.au/published/workflow?id=7d268e7209a68e2e, https://usegalaxy.org.au/published/workflow?id=7fd58f5fc93f414e, https://usegalaxy.org.au/published/workflow?id=800d28ec61b15244, https://usegalaxy.org.au/published/workflow?id=8034bd0690b4cbe8, https://usegalaxy.org.au/published/workflow?id=8055596d732590d6, https://usegalaxy.org.au/published/workflow?id=810242a3dc4f6170, https://usegalaxy.org.au/published/workflow?id=81a5b96452c71a52, https://usegalaxy.org.au/published/workflow?id=82d0876385b5ac60, https://usegalaxy.org.au/published/workflow?id=83441e3de699d157, https://usegalaxy.org.au/published/workflow?id=8433a2f79b2e5894, https://usegalaxy.org.au/published/workflow?id=857e482acfcb2dba, https://usegalaxy.org.au/published/workflow?id=8597166abda0a375, https://usegalaxy.org.au/published/workflow?id=85aede91db0122e4, https://usegalaxy.org.au/published/workflow?id=868775ef66d174a5, https://usegalaxy.org.au/published/workflow?id=86eb0ea9dc230f04, https://usegalaxy.org.au/published/workflow?id=888eb87b62c4e6dd, https://usegalaxy.org.au/published/workflow?id=888f8377eb6eabf2, https://usegalaxy.org.au/published/workflow?id=8926e592f2e60863, https://usegalaxy.org.au/published/workflow?id=897a1255cef5c310, https://usegalaxy.org.au/published/workflow?id=8a6233015db6dd24, https://usegalaxy.org.au/published/workflow?id=8b5897305dcaf076, https://usegalaxy.org.au/published/workflow?id=8bf8c9929249f37d, https://usegalaxy.org.au/published/workflow?id=8cab31db0bd3ff52, https://usegalaxy.org.au/published/workflow?id=8d6d4f848067f3d9, https://usegalaxy.org.au/published/workflow?id=8dd86497bc15d981, https://usegalaxy.org.au/published/workflow?id=8e2b94c6fbf44368, https://usegalaxy.org.au/published/workflow?id=8e8a5cce9f3f2f67, https://usegalaxy.org.au/published/workflow?id=8eab5e2b2c683076, https://usegalaxy.org.au/published/workflow?id=9016b2be61f89053, https://usegalaxy.org.au/published/workflow?id=91c8daa5f2bcf7c0, https://usegalaxy.org.au/published/workflow?id=91cfd96f697ba034, https://usegalaxy.org.au/published/workflow?id=91ee716be8bfd508, https://usegalaxy.org.au/published/workflow?id=9281258aefd17c0c, https://usegalaxy.org.au/published/workflow?id=92fcdd490831c6c5, https://usegalaxy.org.au/published/workflow?id=932bad88f8dc8d33, https://usegalaxy.org.au/published/workflow?id=9642aadb83c4f752, https://usegalaxy.org.au/published/workflow?id=970dc0d8bd74707f, https://usegalaxy.org.au/published/workflow?id=9787c8b7adeedb0c, https://usegalaxy.org.au/published/workflow?id=97cdd93e41aa46f9, https://usegalaxy.org.au/published/workflow?id=97e55a900db3863b, https://usegalaxy.org.au/published/workflow?id=9804030358c3f844, https://usegalaxy.org.au/published/workflow?id=981d7b02416b7734, https://usegalaxy.org.au/published/workflow?id=989eb73372135796, https://usegalaxy.org.au/published/workflow?id=98d3def7da131b4c, https://usegalaxy.org.au/published/workflow?id=98f660971010d11d, https://usegalaxy.org.au/published/workflow?id=99821674db7682bb, https://usegalaxy.org.au/published/workflow?id=9b18123afbe1264b, https://usegalaxy.org.au/published/workflow?id=9bc31dff5bcec42b, https://usegalaxy.org.au/published/workflow?id=9e0bae0505ee7c07, https://usegalaxy.org.au/published/workflow?id=9ec9fe2715d7cfdc, https://usegalaxy.org.au/published/workflow?id=9f112e39bd3bd746, https://usegalaxy.org.au/published/workflow?id=9f6e62f465589ca3, https://usegalaxy.org.au/published/workflow?id=a02c102e179596cb, https://usegalaxy.org.au/published/workflow?id=a1015b83baa0eb6d, https://usegalaxy.org.au/published/workflow?id=a1b97364f84022cf, https://usegalaxy.org.au/published/workflow?id=a209f43d8a3cc853, https://usegalaxy.org.au/published/workflow?id=a320948b3eb1a421, https://usegalaxy.org.au/published/workflow?id=a345bf84eb9bf6b2, https://usegalaxy.org.au/published/workflow?id=a40dadc943a0db1e, https://usegalaxy.org.au/published/workflow?id=a484cdc9ff9d7e9e, https://usegalaxy.org.au/published/workflow?id=a525966251895f8a, https://usegalaxy.org.au/published/workflow?id=a5ccbb9aced9ac53, https://usegalaxy.org.au/published/workflow?id=a71349ba0bff403a, https://usegalaxy.org.au/published/workflow?id=a7346c25dfdf2e3e, https://usegalaxy.org.au/published/workflow?id=a740543c4e9808f1, https://usegalaxy.org.au/published/workflow?id=a763e53653b10ce0, https://usegalaxy.org.au/published/workflow?id=a820d57cc8300253, https://usegalaxy.org.au/published/workflow?id=a8ec08a1408cd6e7, https://usegalaxy.org.au/published/workflow?id=a9068ea858222e2b, https://usegalaxy.org.au/published/workflow?id=a9e52a40b63d26fc, https://usegalaxy.org.au/published/workflow?id=a9e59d38c6c710bc, https://usegalaxy.org.au/published/workflow?id=aa1d123c0a0929f3, https://usegalaxy.org.au/published/workflow?id=aa387984ac9e2f71, https://usegalaxy.org.au/published/workflow?id=aaaf580eb00459b6, https://usegalaxy.org.au/published/workflow?id=ac8bdc5a0b2d70cd, https://usegalaxy.org.au/published/workflow?id=ad10cd704268dcf0, https://usegalaxy.org.au/published/workflow?id=ae2a397837b232b1, https://usegalaxy.org.au/published/workflow?id=ae6a03240680712a, https://usegalaxy.org.au/published/workflow?id=afab89bc468da8b3, https://usegalaxy.org.au/published/workflow?id=b09530351a9e9ffb, https://usegalaxy.org.au/published/workflow?id=b0b8b8f79b467cf6, https://usegalaxy.org.au/published/workflow?id=b191da6e594747fb, https://usegalaxy.org.au/published/workflow?id=b19fa49405117317, https://usegalaxy.org.au/published/workflow?id=b1f45d2f8d8343e9, https://usegalaxy.org.au/published/workflow?id=b20f28151e46d3e0, https://usegalaxy.org.au/published/workflow?id=b310af289ada88bc, https://usegalaxy.org.au/published/workflow?id=b432a1312859edd2, https://usegalaxy.org.au/published/workflow?id=b5131e3a0ef2676e, https://usegalaxy.org.au/published/workflow?id=b53f82aaf32fbaa9, https://usegalaxy.org.au/published/workflow?id=b5e546197f47f3ec, https://usegalaxy.org.au/published/workflow?id=b601f48ecec15bf4, https://usegalaxy.org.au/published/workflow?id=b60922a253df6654, https://usegalaxy.org.au/published/workflow?id=b7226d37b25df833, https://usegalaxy.org.au/published/workflow?id=b808cd1c0090b068, https://usegalaxy.org.au/published/workflow?id=b88036506d0be117, https://usegalaxy.org.au/published/workflow?id=b8968fb0bf796e53, https://usegalaxy.org.au/published/workflow?id=b920b02a23f94d11, https://usegalaxy.org.au/published/workflow?id=b9e82e3fae56d8b4, https://usegalaxy.org.au/published/workflow?id=b9e89401313a0cca, https://usegalaxy.org.au/published/workflow?id=b9faf6a3f48fc11b, https://usegalaxy.org.au/published/workflow?id=ba217a34d7e1b5ee, https://usegalaxy.org.au/published/workflow?id=ba7a9d4c857d26b7, https://usegalaxy.org.au/published/workflow?id=baa763dbdf6afb71, https://usegalaxy.org.au/published/workflow?id=bc4e3115586cbe62, https://usegalaxy.org.au/published/workflow?id=bcdbefda8e15e547, https://usegalaxy.org.au/published/workflow?id=bcf230e526632064, https://usegalaxy.org.au/published/workflow?id=bda98c5a0ea70dd0, https://usegalaxy.org.au/published/workflow?id=bdb498b1f0e8944f, https://usegalaxy.org.au/published/workflow?id=be35847680078c90, https://usegalaxy.org.au/published/workflow?id=be9213411c520096, https://usegalaxy.org.au/published/workflow?id=be96bb47b6d6435a, https://usegalaxy.org.au/published/workflow?id=c04a62f528a69e79, https://usegalaxy.org.au/published/workflow?id=c1ce3f2ae7c81c3e, https://usegalaxy.org.au/published/workflow?id=c2dee690320f9845, https://usegalaxy.org.au/published/workflow?id=c38b998d3e90c329, https://usegalaxy.org.au/published/workflow?id=c3bb21f20a3ce689, https://usegalaxy.org.au/published/workflow?id=c3e198bc2146b4ad, https://usegalaxy.org.au/published/workflow?id=c4a303c1571d202e, https://usegalaxy.org.au/published/workflow?id=c556c2270200801d, https://usegalaxy.org.au/published/workflow?id=c622bd03677314aa, https://usegalaxy.org.au/published/workflow?id=c6a71573a299eb3a, https://usegalaxy.org.au/published/workflow?id=c6bc6ee668ab51ab, https://usegalaxy.org.au/published/workflow?id=c7e1f666a3366823, https://usegalaxy.org.au/published/workflow?id=c7f2d6490128dc3c, https://usegalaxy.org.au/published/workflow?id=c853aa707fcddf4e, https://usegalaxy.org.au/published/workflow?id=c87c1f8c4eff415a, https://usegalaxy.org.au/published/workflow?id=c9156ca3df2b595c, https://usegalaxy.org.au/published/workflow?id=c92fead7c30c7497, https://usegalaxy.org.au/published/workflow?id=cac0b8a09d59044b, https://usegalaxy.org.au/published/workflow?id=cbf022e349d726d9, https://usegalaxy.org.au/published/workflow?id=ccc6602623583bcc, https://usegalaxy.org.au/published/workflow?id=ccf936c5b2f2c2f3, https://usegalaxy.org.au/published/workflow?id=ce7106593536f900, https://usegalaxy.org.au/published/workflow?id=ce7f6a1c824920e2, https://usegalaxy.org.au/published/workflow?id=cf775b8ff0745456, https://usegalaxy.org.au/published/workflow?id=d094d2aa9c6e9c24, https://usegalaxy.org.au/published/workflow?id=d0d6743450e5060d, https://usegalaxy.org.au/published/workflow?id=d126940d33e63036, https://usegalaxy.org.au/published/workflow?id=d1b604a5441dc4b0, https://usegalaxy.org.au/published/workflow?id=d298edda13b382e7, https://usegalaxy.org.au/published/workflow?id=d2dcd3b54e5082a6, https://usegalaxy.org.au/published/workflow?id=d35d05be576e8b13, https://usegalaxy.org.au/published/workflow?id=d417e920ff97e4c1, https://usegalaxy.org.au/published/workflow?id=d42d7b1aa47e870f, https://usegalaxy.org.au/published/workflow?id=d5717afa6cce6fb4, https://usegalaxy.org.au/published/workflow?id=d5a3fd1faa3f0a41, https://usegalaxy.org.au/published/workflow?id=d62b6717202f42c9, https://usegalaxy.org.au/published/workflow?id=d69a765cfc82a399, https://usegalaxy.org.au/published/workflow?id=d720c98f7227b6d5, https://usegalaxy.org.au/published/workflow?id=d7f3fc810261e419, https://usegalaxy.org.au/published/workflow?id=d83d5ecf31c20490, https://usegalaxy.org.au/published/workflow?id=d9c181fd954b629a, https://usegalaxy.org.au/published/workflow?id=da79aa2dfd6b34bc, https://usegalaxy.org.au/published/workflow?id=daff6854b5dfc6f1, https://usegalaxy.org.au/published/workflow?id=df4e186069552649, https://usegalaxy.org.au/published/workflow?id=e031af90daa2cadf, https://usegalaxy.org.au/published/workflow?id=e07866576cc2f467, https://usegalaxy.org.au/published/workflow?id=e0b89b4e50d1a99b, https://usegalaxy.org.au/published/workflow?id=e154a9b605ea0886, https://usegalaxy.org.au/published/workflow?id=e1fd89e7248b6661, https://usegalaxy.org.au/published/workflow?id=e28ca83f14f4ede5, https://usegalaxy.org.au/published/workflow?id=e439a0e17a90d24c, https://usegalaxy.org.au/published/workflow?id=e4ddf33ee5b5e259, https://usegalaxy.org.au/published/workflow?id=e57c6d05b560e206, https://usegalaxy.org.au/published/workflow?id=e6552643a3713b50, https://usegalaxy.org.au/published/workflow?id=e66306b1006d010b, https://usegalaxy.org.au/published/workflow?id=e92b4d8dfa2f1cf7, https://usegalaxy.org.au/published/workflow?id=ea687c5613fcce27, https://usegalaxy.org.au/published/workflow?id=ea98be0f99aaceb9, https://usegalaxy.org.au/published/workflow?id=ebf88e79c4f094ba, https://usegalaxy.org.au/published/workflow?id=ecfb8a08e5a40e15, https://usegalaxy.org.au/published/workflow?id=ed2f72e3537e8a4a, https://usegalaxy.org.au/published/workflow?id=eda40b58616a0fe4, https://usegalaxy.org.au/published/workflow?id=edc20b5e70297a7d, https://usegalaxy.org.au/published/workflow?id=ef8c22c2525063a2, https://usegalaxy.org.au/published/workflow?id=f06370394b061e08, https://usegalaxy.org.au/published/workflow?id=f27f6ed478d7a258, https://usegalaxy.org.au/published/workflow?id=f53d8ade897b3f46, https://usegalaxy.org.au/published/workflow?id=f7a866159f1eaecf, https://usegalaxy.org.au/published/workflow?id=f895914e322c8b77, https://usegalaxy.org.au/published/workflow?id=fa37223950a91f34, https://usegalaxy.org.au/published/workflow?id=fa4fa7353dffef9a, https://usegalaxy.org.au/published/workflow?id=fa87a22c8dcd8d78, https://usegalaxy.org.au/published/workflow?id=fbc732db2a2821b0, https://usegalaxy.org.au/published/workflow?id=fdec6e2fcd5e2cf5, https://usegalaxy.org.au/published/workflow?id=fe1e7fa0bc437ed8, https://usegalaxy.org.au/published/workflow?id=fe5542c99cdc57ce, https://usegalaxy.org.au/published/workflow?id=fea0e6c02c2f6274, https://usegalaxy.org.au/published/workflow?id=fff2e49bc90e38ca, https://usegalaxy.org/published/workflow?id=00a4dbc9329c638b, https://usegalaxy.org/published/workflow?id=00bc4e99626da1ba, https://usegalaxy.org/published/workflow?id=0135ec6af1f3be93, https://usegalaxy.org/published/workflow?id=019be65613876562, https://usegalaxy.org/published/workflow?id=028f1beead539975, https://usegalaxy.org/published/workflow?id=02e29499b946f3bb, https://usegalaxy.org/published/workflow?id=0360984110693d9f, https://usegalaxy.org/published/workflow?id=042758b8a8c5ac80, https://usegalaxy.org/published/workflow?id=05e86b4df0d14800, https://usegalaxy.org/published/workflow?id=05ef809e2b11154c, https://usegalaxy.org/published/workflow?id=063173d36c254105, https://usegalaxy.org/published/workflow?id=06b489dc859f6e39, https://usegalaxy.org/published/workflow?id=06f3ca70b542556e, https://usegalaxy.org/published/workflow?id=070e476b3aa36fbe, https://usegalaxy.org/published/workflow?id=0775d8efad0dac10, https://usegalaxy.org/published/workflow?id=07dca0dc191fb1de, https://usegalaxy.org/published/workflow?id=07e761b2501971c6, https://usegalaxy.org/published/workflow?id=07e873a6d75dfe9f, https://usegalaxy.org/published/workflow?id=07fdeadce7a6d5cb, https://usegalaxy.org/published/workflow?id=0843c6f15eae2f15, https://usegalaxy.org/published/workflow?id=08da44d18689dffc, https://usegalaxy.org/published/workflow?id=091f788edad78956, https://usegalaxy.org/published/workflow?id=092be3cf6e40282c, https://usegalaxy.org/published/workflow?id=098375608a1223aa, https://usegalaxy.org/published/workflow?id=098fd236c5e2895d, https://usegalaxy.org/published/workflow?id=0993daadf2db5f51, https://usegalaxy.org/published/workflow?id=0b85fb10ed25d34e, https://usegalaxy.org/published/workflow?id=0c052e50594f6d2d, https://usegalaxy.org/published/workflow?id=0d47009eb2d7bdc1, https://usegalaxy.org/published/workflow?id=0d8eb75d28fa7df2, https://usegalaxy.org/published/workflow?id=0d8ec47a84766f96, https://usegalaxy.org/published/workflow?id=0dec1b9dbbb2f425, https://usegalaxy.org/published/workflow?id=0ebb1f5b6c9c8ab9, https://usegalaxy.org/published/workflow?id=0fa2ce12c2874b1d, https://usegalaxy.org/published/workflow?id=0fb89e9c397c8938, https://usegalaxy.org/published/workflow?id=100340be53c2851c, https://usegalaxy.org/published/workflow?id=1010a9b57c77239c, https://usegalaxy.org/published/workflow?id=10c5f3c5cadd7417, https://usegalaxy.org/published/workflow?id=10d5e195501603bc, https://usegalaxy.org/published/workflow?id=1234a128adc25b03, https://usegalaxy.org/published/workflow?id=1245e9435cbc3985, https://usegalaxy.org/published/workflow?id=1250ec3ad6199cda, https://usegalaxy.org/published/workflow?id=12a52ae52e0f1053, https://usegalaxy.org/published/workflow?id=137d0f05a71d7acb, https://usegalaxy.org/published/workflow?id=1388fe5d8b50bc7c, https://usegalaxy.org/published/workflow?id=13a1fa4f6daf65cc, https://usegalaxy.org/published/workflow?id=13a3954b8894e1b1, https://usegalaxy.org/published/workflow?id=13d9db3715f32b37, https://usegalaxy.org/published/workflow?id=1473cdcbd664d147, https://usegalaxy.org/published/workflow?id=148c071f5c5a4586, https://usegalaxy.org/published/workflow?id=150e288c2c2fe9e9, https://usegalaxy.org/published/workflow?id=1518c8c50747a1c1, https://usegalaxy.org/published/workflow?id=155839aeb6340f54, https://usegalaxy.org/published/workflow?id=156e245e3d9f22ce, https://usegalaxy.org/published/workflow?id=15ea806eaf077617, https://usegalaxy.org/published/workflow?id=162fda90525220de, https://usegalaxy.org/published/workflow?id=16910402667eec78, https://usegalaxy.org/published/workflow?id=170287dcfb9de475, https://usegalaxy.org/published/workflow?id=172ee5e5bef33d2e, https://usegalaxy.org/published/workflow?id=173ecc0c88090d0e, https://usegalaxy.org/published/workflow?id=17a7ff756d37a437, https://usegalaxy.org/published/workflow?id=17f3d7e52777d2e8, https://usegalaxy.org/published/workflow?id=1829c91a30138721, https://usegalaxy.org/published/workflow?id=183254b3565bcb04, https://usegalaxy.org/published/workflow?id=195a608c481040de, https://usegalaxy.org/published/workflow?id=19c1ba21e82d8615, https://usegalaxy.org/published/workflow?id=19ce6cf93298e268, https://usegalaxy.org/published/workflow?id=19fcce20ecaf2ef6, https://usegalaxy.org/published/workflow?id=1a23d8c795846251, https://usegalaxy.org/published/workflow?id=1b434bfc3aac0022, https://usegalaxy.org/published/workflow?id=1b80302437db5937, https://usegalaxy.org/published/workflow?id=1c5a7196a442dd02, https://usegalaxy.org/published/workflow?id=1cad9a0b375ed3d1, https://usegalaxy.org/published/workflow?id=1cbd946c4cc0e7b9, https://usegalaxy.org/published/workflow?id=1d19cf599e1d4a0f, https://usegalaxy.org/published/workflow?id=1d24cc949c52e475, https://usegalaxy.org/published/workflow?id=1d56a0975fca0e99, https://usegalaxy.org/published/workflow?id=1d69ab87c94d68fd, https://usegalaxy.org/published/workflow?id=1d748868e78275dd, https://usegalaxy.org/published/workflow?id=1d8227ad3f3651a0, https://usegalaxy.org/published/workflow?id=1d925422fc6094a0, https://usegalaxy.org/published/workflow?id=1dd63a7b4c6f4c83, https://usegalaxy.org/published/workflow?id=1deaf458d6d8695a, https://usegalaxy.org/published/workflow?id=1e0a55635f5b04cf, https://usegalaxy.org/published/workflow?id=1e1a299825f27f11, https://usegalaxy.org/published/workflow?id=1e1d7fac7e241768, https://usegalaxy.org/published/workflow?id=1e264fc06d87899f, https://usegalaxy.org/published/workflow?id=1ea88ca80a7f0038, https://usegalaxy.org/published/workflow?id=1eec2586d1ff908b, https://usegalaxy.org/published/workflow?id=1f00e44f590b8369, https://usegalaxy.org/published/workflow?id=1f28e673ea725541, https://usegalaxy.org/published/workflow?id=1f98df1adba71b98, https://usegalaxy.org/published/workflow?id=1fdd58f4b7a6f643, https://usegalaxy.org/published/workflow?id=1ffc71df8eeed57e, https://usegalaxy.org/published/workflow?id=20023b26bb60f4df, https://usegalaxy.org/published/workflow?id=202648c6c615929b, https://usegalaxy.org/published/workflow?id=204d0da8a023d7da, https://usegalaxy.org/published/workflow?id=2078abc4c99c3344, https://usegalaxy.org/published/workflow?id=20b7ae4b517a80fd, https://usegalaxy.org/published/workflow?id=2219c4aa7eb8cfb8, https://usegalaxy.org/published/workflow?id=226b506d1fc30e96, https://usegalaxy.org/published/workflow?id=228ae7f537a60226, https://usegalaxy.org/published/workflow?id=23212ae74fc2d2b5, https://usegalaxy.org/published/workflow?id=23468eea382e6bb4, https://usegalaxy.org/published/workflow?id=237ca9f36ca266e7, https://usegalaxy.org/published/workflow?id=23c4e801213eee50, https://usegalaxy.org/published/workflow?id=23eeee48217654d4, https://usegalaxy.org/published/workflow?id=242ef2e9dee35702, https://usegalaxy.org/published/workflow?id=2497103d279cd20e, https://usegalaxy.org/published/workflow?id=2524e026f069e885, https://usegalaxy.org/published/workflow?id=25a9f0693ff6d327, https://usegalaxy.org/published/workflow?id=25b8b5af30042d76, https://usegalaxy.org/published/workflow?id=25cdc47baba556c5, https://usegalaxy.org/published/workflow?id=27ee9da9121d0522, https://usegalaxy.org/published/workflow?id=283bc048cc7a80f5, https://usegalaxy.org/published/workflow?id=284150bb1f296378, https://usegalaxy.org/published/workflow?id=28b2550248a54d74, https://usegalaxy.org/published/workflow?id=28c7e8269d478244, https://usegalaxy.org/published/workflow?id=28d1e2d715476c2c, https://usegalaxy.org/published/workflow?id=28dbbfb3d480f4b1, https://usegalaxy.org/published/workflow?id=28ddea356ae57da1, https://usegalaxy.org/published/workflow?id=291829fed6fa7c44, https://usegalaxy.org/published/workflow?id=2957924403998f3a, https://usegalaxy.org/published/workflow?id=2967ef82911f2cca, https://usegalaxy.org/published/workflow?id=29ba77708cdafe0f, https://usegalaxy.org/published/workflow?id=2a4823c060dd216e, https://usegalaxy.org/published/workflow?id=2af3de32c630e1b4, https://usegalaxy.org/published/workflow?id=2b09f3c9465ee054, https://usegalaxy.org/published/workflow?id=2b41752b8518a87b, https://usegalaxy.org/published/workflow?id=2b5346b94358df88, https://usegalaxy.org/published/workflow?id=2b6245843e632c05, https://usegalaxy.org/published/workflow?id=2b820beaeb49dd64, https://usegalaxy.org/published/workflow?id=2c5c627c08563398, https://usegalaxy.org/published/workflow?id=2cc5472ad7c039d1, https://usegalaxy.org/published/workflow?id=2d3063882d8239ff, https://usegalaxy.org/published/workflow?id=2d6d74294e911fa3, https://usegalaxy.org/published/workflow?id=2d994cc02ec05ede, https://usegalaxy.org/published/workflow?id=2db2d27f0c627f44, https://usegalaxy.org/published/workflow?id=2dceaa255cc8cf83, https://usegalaxy.org/published/workflow?id=2e029537d2f4ab50, https://usegalaxy.org/published/workflow?id=2ec3e326c51d3147, https://usegalaxy.org/published/workflow?id=2f1469dab87a3649, https://usegalaxy.org/published/workflow?id=2f4d5f833aa1c981, https://usegalaxy.org/published/workflow?id=2f774500d5bec9a6, https://usegalaxy.org/published/workflow?id=305eafecadfa8815, https://usegalaxy.org/published/workflow?id=305fb9f84b053713, https://usegalaxy.org/published/workflow?id=30a3744026ad86a7, https://usegalaxy.org/published/workflow?id=30ba39be60ec29be, https://usegalaxy.org/published/workflow?id=31186e478383465b, https://usegalaxy.org/published/workflow?id=313d50268e1e22e4, https://usegalaxy.org/published/workflow?id=3179c157fa5a2fdd, https://usegalaxy.org/published/workflow?id=31a6145b0832fa48, https://usegalaxy.org/published/workflow?id=31acbfc6d3775846, https://usegalaxy.org/published/workflow?id=31ed5a2bcc8da51a, https://usegalaxy.org/published/workflow?id=325783f21bc5fef6, https://usegalaxy.org/published/workflow?id=3269026bb1e0ec42, https://usegalaxy.org/published/workflow?id=326ced2230a49c26, https://usegalaxy.org/published/workflow?id=32c769241ffce3d1, https://usegalaxy.org/published/workflow?id=336795e890851c21, https://usegalaxy.org/published/workflow?id=33e827d75a0074df, https://usegalaxy.org/published/workflow?id=347571ba3b281bf4, https://usegalaxy.org/published/workflow?id=349f1bcdbc84045f, https://usegalaxy.org/published/workflow?id=3511da8b41b1fb5d, https://usegalaxy.org/published/workflow?id=3565de0b5f5da36f, https://usegalaxy.org/published/workflow?id=357225c624e796b5, https://usegalaxy.org/published/workflow?id=35c022174ce79c1e, https://usegalaxy.org/published/workflow?id=35ec8aeeaa59f6ae, https://usegalaxy.org/published/workflow?id=3673a1ced343d0d0, https://usegalaxy.org/published/workflow?id=36a92f1f6d2212a4, https://usegalaxy.org/published/workflow?id=36c885b0bc829da3, https://usegalaxy.org/published/workflow?id=371273ba52f1f5dc, https://usegalaxy.org/published/workflow?id=3753dcca4100e976, https://usegalaxy.org/published/workflow?id=375f5142c207a768, https://usegalaxy.org/published/workflow?id=3823773ef4ecaaf4, https://usegalaxy.org/published/workflow?id=386d3b300cf05305, https://usegalaxy.org/published/workflow?id=38911ba6f66d80f6, https://usegalaxy.org/published/workflow?id=38cc6577c9b15275, https://usegalaxy.org/published/workflow?id=39753cc73284963f, https://usegalaxy.org/published/workflow?id=39810594e5c332d5, https://usegalaxy.org/published/workflow?id=3aa1b79aa6cca06b, https://usegalaxy.org/published/workflow?id=3ab66315f50501f0, https://usegalaxy.org/published/workflow?id=3b2bee20f0cfd957, https://usegalaxy.org/published/workflow?id=3b49ba6b36b863f7, https://usegalaxy.org/published/workflow?id=3b5437544ca3b5dc, https://usegalaxy.org/published/workflow?id=3ba73f679558017c, https://usegalaxy.org/published/workflow?id=3c076bc8551a23d2, https://usegalaxy.org/published/workflow?id=3c0af11dbeeee506, https://usegalaxy.org/published/workflow?id=3c1e2bbb1a77cc30, https://usegalaxy.org/published/workflow?id=3c7349268d74c576, https://usegalaxy.org/published/workflow?id=3cb4fd9ff755d36e, https://usegalaxy.org/published/workflow?id=3d0ba2f11f370e05, https://usegalaxy.org/published/workflow?id=3d7a9694bcee6db5, https://usegalaxy.org/published/workflow?id=3d805d7e0f34c727, https://usegalaxy.org/published/workflow?id=3db4eb1ecb588d44, https://usegalaxy.org/published/workflow?id=3db51822f04f4ff7, https://usegalaxy.org/published/workflow?id=3e57e668cf698d19, https://usegalaxy.org/published/workflow?id=3e6c9ab5ef3250ae, https://usegalaxy.org/published/workflow?id=3e703abaeb870f6f, https://usegalaxy.org/published/workflow?id=3ef08553982f6ffc, https://usegalaxy.org/published/workflow?id=3f252e077e0bcce5, https://usegalaxy.org/published/workflow?id=3f7550d5d2bf0b96, https://usegalaxy.org/published/workflow?id=3f92474cd16ca314, https://usegalaxy.org/published/workflow?id=3fc5bdbd6355477c, https://usegalaxy.org/published/workflow?id=3fdd7a7907233d58, https://usegalaxy.org/published/workflow?id=4054ceeba1a2fa69, https://usegalaxy.org/published/workflow?id=405dc14eb02ff234, https://usegalaxy.org/published/workflow?id=40645bd2f9b3b80c, https://usegalaxy.org/published/workflow?id=408c799822cbf6ea, https://usegalaxy.org/published/workflow?id=40a65b5bc1dcc0b4, https://usegalaxy.org/published/workflow?id=412da1489d6aed45, https://usegalaxy.org/published/workflow?id=414fa13b613b33d8, https://usegalaxy.org/published/workflow?id=41c09a87c6cd5f75, https://usegalaxy.org/published/workflow?id=41c40e7aa6b24f51, https://usegalaxy.org/published/workflow?id=42331381df05b956, https://usegalaxy.org/published/workflow?id=424acfc2ded46f9f, https://usegalaxy.org/published/workflow?id=426358bd988cb39d, https://usegalaxy.org/published/workflow?id=4357180d40560019, https://usegalaxy.org/published/workflow?id=435f0340bf00c940, https://usegalaxy.org/published/workflow?id=43861b38cf6e927e, https://usegalaxy.org/published/workflow?id=438761debd08a9be, https://usegalaxy.org/published/workflow?id=43c39bc86399188f, https://usegalaxy.org/published/workflow?id=442949862ba62462, https://usegalaxy.org/published/workflow?id=442a2868873e7f77, https://usegalaxy.org/published/workflow?id=4445c84aa4795a05, https://usegalaxy.org/published/workflow?id=444c856f03b6d2a7, https://usegalaxy.org/published/workflow?id=446a9297e64ecb72, https://usegalaxy.org/published/workflow?id=44781c8b0bd667ed, https://usegalaxy.org/published/workflow?id=448a0797f9150198, https://usegalaxy.org/published/workflow?id=449a419bcfd3c49e, https://usegalaxy.org/published/workflow?id=44bcae0e352563f9, https://usegalaxy.org/published/workflow?id=450c2181f89e6b23, https://usegalaxy.org/published/workflow?id=45c0b677c4920d03, https://usegalaxy.org/published/workflow?id=45cb3e98b1319c7c, https://usegalaxy.org/published/workflow?id=45f959d5bf505b15, https://usegalaxy.org/published/workflow?id=4612ec88a57ab9e7, https://usegalaxy.org/published/workflow?id=46207bf9ce5ee26a, https://usegalaxy.org/published/workflow?id=462a1176b48eef4a, https://usegalaxy.org/published/workflow?id=4680511d4daad5d7, https://usegalaxy.org/published/workflow?id=46894456a9bec601, https://usegalaxy.org/published/workflow?id=46e718fb8eeb4d54, https://usegalaxy.org/published/workflow?id=46f184a0e95f3c1c, https://usegalaxy.org/published/workflow?id=470b41d0e43bb46b, https://usegalaxy.org/published/workflow?id=472f73c3e81da1d9, https://usegalaxy.org/published/workflow?id=4790266996f12979, https://usegalaxy.org/published/workflow?id=47a2458ee9d57b24, https://usegalaxy.org/published/workflow?id=484f8fcf21d67376, https://usegalaxy.org/published/workflow?id=4884918895db9af0, https://usegalaxy.org/published/workflow?id=498a8c6329ca5728, https://usegalaxy.org/published/workflow?id=49a07807fcea8158, https://usegalaxy.org/published/workflow?id=49c9e8161a46667f, https://usegalaxy.org/published/workflow?id=4a01263e3d4b4edb, https://usegalaxy.org/published/workflow?id=4a0ad87aa5aa558a, https://usegalaxy.org/published/workflow?id=4a3057fdc10d843c, https://usegalaxy.org/published/workflow?id=4b41a8247f52c463, https://usegalaxy.org/published/workflow?id=4b7daa3c73c8ef30, https://usegalaxy.org/published/workflow?id=4b92dfd20d48d479, https://usegalaxy.org/published/workflow?id=4ba61941f31f0215, https://usegalaxy.org/published/workflow?id=4bf38f5b45faa8a1, https://usegalaxy.org/published/workflow?id=4bf73376661baafd, https://usegalaxy.org/published/workflow?id=4c840284d2984fa0, https://usegalaxy.org/published/workflow?id=4c996921fb6a2334, https://usegalaxy.org/published/workflow?id=4ca8b023f9a33440, https://usegalaxy.org/published/workflow?id=4cc70b699ea8bc63, https://usegalaxy.org/published/workflow?id=4cf8cc42e97b2da6, https://usegalaxy.org/published/workflow?id=4dbac8374419d29e, https://usegalaxy.org/published/workflow?id=4e3efbdd0c4c3e64, https://usegalaxy.org/published/workflow?id=4e8639cc4e9050d1, https://usegalaxy.org/published/workflow?id=4ed9f54caa932479, https://usegalaxy.org/published/workflow?id=4f459cfef6108e75, https://usegalaxy.org/published/workflow?id=4f6e8ff94ca4f164, https://usegalaxy.org/published/workflow?id=4faff660f6defa10, https://usegalaxy.org/published/workflow?id=505c826e8c99d7bf, https://usegalaxy.org/published/workflow?id=506acac8c6a58d5e, https://usegalaxy.org/published/workflow?id=51754f5039d2f244, https://usegalaxy.org/published/workflow?id=5199f404ad7ecef8, https://usegalaxy.org/published/workflow?id=51d80a44d7d6fff7, https://usegalaxy.org/published/workflow?id=5203bc68df3cf819, https://usegalaxy.org/published/workflow?id=52592de9687fc6de, https://usegalaxy.org/published/workflow?id=527adadecbab2eb6, https://usegalaxy.org/published/workflow?id=52b7524a3941885c, https://usegalaxy.org/published/workflow?id=52bde903adbbaf60, https://usegalaxy.org/published/workflow?id=52e2b69787ca7a17, https://usegalaxy.org/published/workflow?id=531d02f7213f9113, https://usegalaxy.org/published/workflow?id=5324757bc3974635, https://usegalaxy.org/published/workflow?id=533b1d5d08f9943e, https://usegalaxy.org/published/workflow?id=5361db01e3b6cc0c, https://usegalaxy.org/published/workflow?id=53fdff74729a6780, https://usegalaxy.org/published/workflow?id=553125cd799e5982, https://usegalaxy.org/published/workflow?id=5532e6f775adb0d7, https://usegalaxy.org/published/workflow?id=55c09bcdf3d7ae16, https://usegalaxy.org/published/workflow?id=56427a9b9c3848bf, https://usegalaxy.org/published/workflow?id=570172fbcf865e1d, https://usegalaxy.org/published/workflow?id=57726b39bbfb0c54, https://usegalaxy.org/published/workflow?id=57cfc1b5d9ea0d72, https://usegalaxy.org/published/workflow?id=57e6345fda3e2682, https://usegalaxy.org/published/workflow?id=582f3de3971fc38c, https://usegalaxy.org/published/workflow?id=586b923221fb5da4, https://usegalaxy.org/published/workflow?id=58eeb06f911e8410, https://usegalaxy.org/published/workflow?id=59007e2bc9c807ee, https://usegalaxy.org/published/workflow?id=5951d11d3122abed, https://usegalaxy.org/published/workflow?id=597c4d54f8a8ebe7, https://usegalaxy.org/published/workflow?id=5a16ff38eb80da82, https://usegalaxy.org/published/workflow?id=5a55d9bd9701b1ce, https://usegalaxy.org/published/workflow?id=5aa4b9131c31cb79, https://usegalaxy.org/published/workflow?id=5b540de61a70df64, https://usegalaxy.org/published/workflow?id=5b8497a32bf01c4f, https://usegalaxy.org/published/workflow?id=5bcd1aade71a8035, https://usegalaxy.org/published/workflow?id=5bd6d7af64192b86, https://usegalaxy.org/published/workflow?id=5c259623a010fe77, https://usegalaxy.org/published/workflow?id=5c85cd8c56b9f6ab, https://usegalaxy.org/published/workflow?id=5cad854edbbd3b69, https://usegalaxy.org/published/workflow?id=5cb74afcca56a453, https://usegalaxy.org/published/workflow?id=5ccc7d708e13de60, https://usegalaxy.org/published/workflow?id=5d1208bd49f97aeb, https://usegalaxy.org/published/workflow?id=5d87df0cce36f772, https://usegalaxy.org/published/workflow?id=5dd0a672cceb15ec, https://usegalaxy.org/published/workflow?id=5dfec2a3ae5fa765, https://usegalaxy.org/published/workflow?id=5e18bbbe9ff2d9f5, https://usegalaxy.org/published/workflow?id=5e38c7b36e4918ad, https://usegalaxy.org/published/workflow?id=5eb2e090df59d9a9, https://usegalaxy.org/published/workflow?id=5edabfc62f58d8cf, https://usegalaxy.org/published/workflow?id=5f878c4cc3bff68c, https://usegalaxy.org/published/workflow?id=5ffeb9904cf5f0bf, https://usegalaxy.org/published/workflow?id=605160c81d098703, https://usegalaxy.org/published/workflow?id=607d1683d6e26cef, https://usegalaxy.org/published/workflow?id=60b080dc16141121, https://usegalaxy.org/published/workflow?id=60b9910b7bb69f47, https://usegalaxy.org/published/workflow?id=60e999ef3dcff4ca, https://usegalaxy.org/published/workflow?id=612452c925d723b7, https://usegalaxy.org/published/workflow?id=6229546fb8b0eba9, https://usegalaxy.org/published/workflow?id=626260e3c3ee5c08, https://usegalaxy.org/published/workflow?id=62b052f47ccf0a8c, https://usegalaxy.org/published/workflow?id=62c842e67fca5ab7, https://usegalaxy.org/published/workflow?id=62ecc8078a396e9e, https://usegalaxy.org/published/workflow?id=6341c384ceaf47ed, https://usegalaxy.org/published/workflow?id=634bbef1f67a0e30, https://usegalaxy.org/published/workflow?id=63adc811e3ae529d, https://usegalaxy.org/published/workflow?id=63b0ce2faec558d5, https://usegalaxy.org/published/workflow?id=63b3b266bde77563, https://usegalaxy.org/published/workflow?id=63e0dcf18794dbc1, https://usegalaxy.org/published/workflow?id=63f61ad7cae40646, https://usegalaxy.org/published/workflow?id=642e71c64a975461, https://usegalaxy.org/published/workflow?id=64a329cf75834d6b, https://usegalaxy.org/published/workflow?id=64af2cd469fee16a, https://usegalaxy.org/published/workflow?id=653d553ac2fa51c8, https://usegalaxy.org/published/workflow?id=658f6e4985b6e4a7, https://usegalaxy.org/published/workflow?id=65ccf48b7872e36c, https://usegalaxy.org/published/workflow?id=667493d318b86b7d, https://usegalaxy.org/published/workflow?id=66e6b41f6c6d52b7, https://usegalaxy.org/published/workflow?id=672125473ec700bc, https://usegalaxy.org/published/workflow?id=672ca09dce4b0dc3, https://usegalaxy.org/published/workflow?id=676b88d0aac13fa5, https://usegalaxy.org/published/workflow?id=676fa9af68f6a763, https://usegalaxy.org/published/workflow?id=67992bf894a82587, https://usegalaxy.org/published/workflow?id=67e3457099db3ed2, https://usegalaxy.org/published/workflow?id=67e56a9919ed84f7, https://usegalaxy.org/published/workflow?id=683e725f672b7d9b, https://usegalaxy.org/published/workflow?id=68495cc8ec3d46df, https://usegalaxy.org/published/workflow?id=68832752b883c226, https://usegalaxy.org/published/workflow?id=688a55b9ec2f5bf7, https://usegalaxy.org/published/workflow?id=68b995393b3142ec, https://usegalaxy.org/published/workflow?id=68be9cfc0c58cb44, https://usegalaxy.org/published/workflow?id=68d41ffbf92b2a8e, https://usegalaxy.org/published/workflow?id=695152887ca01bf0, https://usegalaxy.org/published/workflow?id=6960b8f6c98a9b9e, https://usegalaxy.org/published/workflow?id=696b2efc589afd6f, https://usegalaxy.org/published/workflow?id=69edab5d6ad91556, https://usegalaxy.org/published/workflow?id=6a08af55c086ec62, https://usegalaxy.org/published/workflow?id=6a174e7498434bd5, https://usegalaxy.org/published/workflow?id=6a2dace98986992a, https://usegalaxy.org/published/workflow?id=6a3e47124e32e260, https://usegalaxy.org/published/workflow?id=6b11d738ee57f245, https://usegalaxy.org/published/workflow?id=6b511b47176893e3, https://usegalaxy.org/published/workflow?id=6c2bb2209aad5e44, https://usegalaxy.org/published/workflow?id=6c68072bf72e6c4a, https://usegalaxy.org/published/workflow?id=6c95a357a3c1f399, https://usegalaxy.org/published/workflow?id=6d0a3f36d2736087, https://usegalaxy.org/published/workflow?id=6d778eeb176d563c, https://usegalaxy.org/published/workflow?id=6d8f0be547b12528, https://usegalaxy.org/published/workflow?id=6db96a9c7e4b8d14, https://usegalaxy.org/published/workflow?id=6dcb43f86b9cd7dc, https://usegalaxy.org/published/workflow?id=6dd383fd86fea674, https://usegalaxy.org/published/workflow?id=6dfe0c6e87c6cb7b, https://usegalaxy.org/published/workflow?id=6e3ca91737d56374, https://usegalaxy.org/published/workflow?id=6e47a35cc5f2bdce, https://usegalaxy.org/published/workflow?id=6ea1bd64873b6c18, https://usegalaxy.org/published/workflow?id=6ecfa8ce19ed86da, https://usegalaxy.org/published/workflow?id=6f2e4b4860413153, https://usegalaxy.org/published/workflow?id=6fa88ca75caba8e4, https://usegalaxy.org/published/workflow?id=6fc7497c86ebd8ee, https://usegalaxy.org/published/workflow?id=7003470003f4a57b, https://usegalaxy.org/published/workflow?id=7072731b51e16923, https://usegalaxy.org/published/workflow?id=7090bb14a7af15bd, https://usegalaxy.org/published/workflow?id=70e2f3e0d0be8e3b, https://usegalaxy.org/published/workflow?id=70f9c7cc75a1d3c0, https://usegalaxy.org/published/workflow?id=716dc497d7d2e1c3, https://usegalaxy.org/published/workflow?id=7185085cbe953cd9, https://usegalaxy.org/published/workflow?id=7203eb3b663bca11, https://usegalaxy.org/published/workflow?id=72d134a60c694b59, https://usegalaxy.org/published/workflow?id=734e08331f8f34b7, https://usegalaxy.org/published/workflow?id=73a8b48cbd6f1d8c, https://usegalaxy.org/published/workflow?id=73c20d784b7ef81a, https://usegalaxy.org/published/workflow?id=73d98e5f821a78b3, https://usegalaxy.org/published/workflow?id=73f5b1a6fd3c703f, https://usegalaxy.org/published/workflow?id=74049914e4a6c791, https://usegalaxy.org/published/workflow?id=7454015793c4adc9, https://usegalaxy.org/published/workflow?id=74c98eafd363cc2b, https://usegalaxy.org/published/workflow?id=75324d68ed124ff5, https://usegalaxy.org/published/workflow?id=75c2cf36253194c2, https://usegalaxy.org/published/workflow?id=75e23bc4e1ac2f5b, https://usegalaxy.org/published/workflow?id=75fffbce810acaf3, https://usegalaxy.org/published/workflow?id=761675cb2c9ad2ef, https://usegalaxy.org/published/workflow?id=768cee70d9aa8cc6, https://usegalaxy.org/published/workflow?id=769ec5a187095b38, https://usegalaxy.org/published/workflow?id=76d5143860fac947, https://usegalaxy.org/published/workflow?id=76fb573f1372ae86, https://usegalaxy.org/published/workflow?id=771345c66d5b9700, https://usegalaxy.org/published/workflow?id=7757cd56fa4d060c, https://usegalaxy.org/published/workflow?id=778a8867b0a6ea4f, https://usegalaxy.org/published/workflow?id=77d1505c0dd65e26, https://usegalaxy.org/published/workflow?id=77de7101effbff3d, https://usegalaxy.org/published/workflow?id=78249d353038002b, https://usegalaxy.org/published/workflow?id=7832cfdeabe47696, https://usegalaxy.org/published/workflow?id=789647a199e563fd, https://usegalaxy.org/published/workflow?id=78979ec454b98338, https://usegalaxy.org/published/workflow?id=79527e2b83fd5c64, https://usegalaxy.org/published/workflow?id=7965d84a9f71da93, https://usegalaxy.org/published/workflow?id=79a282b2bf89c6ac, https://usegalaxy.org/published/workflow?id=7a23e64dfa6957ce, https://usegalaxy.org/published/workflow?id=7a2b4675c758f34e, https://usegalaxy.org/published/workflow?id=7a4d834e794407d9, https://usegalaxy.org/published/workflow?id=7adf904dea83e699, https://usegalaxy.org/published/workflow?id=7af656b8ea5e7e2e, https://usegalaxy.org/published/workflow?id=7b8ee08ba291d231, https://usegalaxy.org/published/workflow?id=7b9e17cb1d72d7e4, https://usegalaxy.org/published/workflow?id=7c4a2339b17a8930, https://usegalaxy.org/published/workflow?id=7c9a55db0b0eb178, https://usegalaxy.org/published/workflow?id=7cee34a6c06c21e4, https://usegalaxy.org/published/workflow?id=7d11026214dd8c93, https://usegalaxy.org/published/workflow?id=7d110e1fca0ac973, https://usegalaxy.org/published/workflow?id=7d6617b8316cee19, https://usegalaxy.org/published/workflow?id=7da0b02000e3b9e8, https://usegalaxy.org/published/workflow?id=7dba74c915f63dc1, https://usegalaxy.org/published/workflow?id=7dde0721a382ea3e, https://usegalaxy.org/published/workflow?id=7decdde67868ed0f, https://usegalaxy.org/published/workflow?id=7df3246858cd83d1, https://usegalaxy.org/published/workflow?id=7e2651e5ed17e3db, https://usegalaxy.org/published/workflow?id=7e56bee496344ddc, https://usegalaxy.org/published/workflow?id=7f02a9ab182a8f94, https://usegalaxy.org/published/workflow?id=7f6900852a81d121, https://usegalaxy.org/published/workflow?id=7fb4dae5daab0522, https://usegalaxy.org/published/workflow?id=803aec95399f7073, https://usegalaxy.org/published/workflow?id=8041fad92ef6e904, https://usegalaxy.org/published/workflow?id=8095deba606ebd5e, https://usegalaxy.org/published/workflow?id=8151be18aab3a3c6, https://usegalaxy.org/published/workflow?id=8182055f5ef561f3, https://usegalaxy.org/published/workflow?id=81f1f0fd6d9235fd, https://usegalaxy.org/published/workflow?id=824730064b5014e5, https://usegalaxy.org/published/workflow?id=82973143b28bb767, https://usegalaxy.org/published/workflow?id=842c09b49c456429, https://usegalaxy.org/published/workflow?id=85011076892808e0, https://usegalaxy.org/published/workflow?id=85bc37a59a6ea443, https://usegalaxy.org/published/workflow?id=85e2a1d6b1d4e3d7, https://usegalaxy.org/published/workflow?id=85f576c991c3d6f1, https://usegalaxy.org/published/workflow?id=864da6858d34df08, https://usegalaxy.org/published/workflow?id=865d2cc4d14ec7e1, https://usegalaxy.org/published/workflow?id=8689dc9eac10c871, https://usegalaxy.org/published/workflow?id=868acaf49d0743ec, https://usegalaxy.org/published/workflow?id=86c67855acbf6124, https://usegalaxy.org/published/workflow?id=870f4988a5cc815e, https://usegalaxy.org/published/workflow?id=8756aabc654b1050, https://usegalaxy.org/published/workflow?id=875ff758068e1c2f, https://usegalaxy.org/published/workflow?id=87756e064ab1e28a, https://usegalaxy.org/published/workflow?id=87c1bdc00b975377, https://usegalaxy.org/published/workflow?id=87d7a69106ca663d, https://usegalaxy.org/published/workflow?id=87eb1a8ee7a2c984, https://usegalaxy.org/published/workflow?id=87ebf1b5956a61b5, https://usegalaxy.org/published/workflow?id=88327cb2e0fe3c25, https://usegalaxy.org/published/workflow?id=884ee0057bde9135, https://usegalaxy.org/published/workflow?id=885f0e66fa6b8790, https://usegalaxy.org/published/workflow?id=88774b222152b3cd, https://usegalaxy.org/published/workflow?id=8881dc79fcecf7b4, https://usegalaxy.org/published/workflow?id=888bfce1c214ab64, https://usegalaxy.org/published/workflow?id=889b394b38b259eb, https://usegalaxy.org/published/workflow?id=88ac2698fa170993, https://usegalaxy.org/published/workflow?id=88d0b64011c3148c, https://usegalaxy.org/published/workflow?id=88e10493f7e6b9d5, https://usegalaxy.org/published/workflow?id=88f8feaad0f615de, https://usegalaxy.org/published/workflow?id=8990ae43ae855bc7, https://usegalaxy.org/published/workflow?id=899f4f371b4c958c, https://usegalaxy.org/published/workflow?id=89d3c800d3be6050, https://usegalaxy.org/published/workflow?id=89f48993bb8f94bd, https://usegalaxy.org/published/workflow?id=89f52c97b3aee938, https://usegalaxy.org/published/workflow?id=8a01c78688beae1d, https://usegalaxy.org/published/workflow?id=8a15bda6ce7a63ec, https://usegalaxy.org/published/workflow?id=8a215695e7b57cf5, https://usegalaxy.org/published/workflow?id=8ae311282a0d27a1, https://usegalaxy.org/published/workflow?id=8b08a05c5926dd0f, https://usegalaxy.org/published/workflow?id=8b1eedebcb94ba93, https://usegalaxy.org/published/workflow?id=8b2c8c8ce121177d, https://usegalaxy.org/published/workflow?id=8b4945a0fb49e03e, https://usegalaxy.org/published/workflow?id=8b81b9a3b49bbf98, https://usegalaxy.org/published/workflow?id=8bf608c6fd0dabd0, https://usegalaxy.org/published/workflow?id=8caea3788657235d, https://usegalaxy.org/published/workflow?id=8cbb9936e88d4f49, https://usegalaxy.org/published/workflow?id=8ccb42012dcb5db2, https://usegalaxy.org/published/workflow?id=8cf06b14037a8d5a, https://usegalaxy.org/published/workflow?id=8cfbaa14cff5a633, https://usegalaxy.org/published/workflow?id=8d605fbd33003d26, https://usegalaxy.org/published/workflow?id=8d8e8927d63803ef, https://usegalaxy.org/published/workflow?id=8db9ccf14567d9ba, https://usegalaxy.org/published/workflow?id=8e1c6ad6ff623015, https://usegalaxy.org/published/workflow?id=8e2b2a40831dfb08, https://usegalaxy.org/published/workflow?id=8e509c87d143022c, https://usegalaxy.org/published/workflow?id=8e863bbef37cc36b, https://usegalaxy.org/published/workflow?id=8e918c12d2f0d1fc, https://usegalaxy.org/published/workflow?id=8ebcae16a7822d93, https://usegalaxy.org/published/workflow?id=8f392d06d32bdf14, https://usegalaxy.org/published/workflow?id=903e35b62946ed76, https://usegalaxy.org/published/workflow?id=906cc2c2d4e24483, https://usegalaxy.org/published/workflow?id=907aaf55487ddf43, https://usegalaxy.org/published/workflow?id=90ac9dc2bd9d8092, https://usegalaxy.org/published/workflow?id=90ed607bedd65524, https://usegalaxy.org/published/workflow?id=90f5b512997c70f8, https://usegalaxy.org/published/workflow?id=9124c2ec80b35680, https://usegalaxy.org/published/workflow?id=914ec4d8fc0022e4, https://usegalaxy.org/published/workflow?id=916a116b69ac5eeb, https://usegalaxy.org/published/workflow?id=917e5a21d51a61ce, https://usegalaxy.org/published/workflow?id=91806144e90637e8, https://usegalaxy.org/published/workflow?id=918863756ce93725, https://usegalaxy.org/published/workflow?id=9192807702bc3de2, https://usegalaxy.org/published/workflow?id=91a4daecbb97d03e, https://usegalaxy.org/published/workflow?id=91ed290805f590de, https://usegalaxy.org/published/workflow?id=9255c0c9017b139f, https://usegalaxy.org/published/workflow?id=92aab10842ff610d, https://usegalaxy.org/published/workflow?id=931dd3e6b1fae4f5, https://usegalaxy.org/published/workflow?id=932b3bc10186f73e, https://usegalaxy.org/published/workflow?id=93650de42fb8c015, https://usegalaxy.org/published/workflow?id=936ed7447c8e0a2d, https://usegalaxy.org/published/workflow?id=9373050c3ce80d56, https://usegalaxy.org/published/workflow?id=93c1fef4472aa7a8, https://usegalaxy.org/published/workflow?id=93cb976bd4ae546e, https://usegalaxy.org/published/workflow?id=93e69c7e7a857ca3, https://usegalaxy.org/published/workflow?id=942db650f4ed97e1, https://usegalaxy.org/published/workflow?id=94ab68d27de2e60f, https://usegalaxy.org/published/workflow?id=950c7245a6c3f6e9, https://usegalaxy.org/published/workflow?id=953d9cbe05e632a8, https://usegalaxy.org/published/workflow?id=958b64b05011d8c0, https://usegalaxy.org/published/workflow?id=961dac8100c6c70c, https://usegalaxy.org/published/workflow?id=962f784745c1b740, https://usegalaxy.org/published/workflow?id=96ae2544e22d34c5, https://usegalaxy.org/published/workflow?id=96bd0007dceec123, https://usegalaxy.org/published/workflow?id=96cdba1fe599ada8, https://usegalaxy.org/published/workflow?id=97263f3308077ff0, https://usegalaxy.org/published/workflow?id=9763787d7b102f39, https://usegalaxy.org/published/workflow?id=97c20a819394e381, https://usegalaxy.org/published/workflow?id=97dcd7285ebd5817, https://usegalaxy.org/published/workflow?id=987d5caea37794c8, https://usegalaxy.org/published/workflow?id=98a4b90f7fc2bfce, https://usegalaxy.org/published/workflow?id=98b2ac8fc75781f8, https://usegalaxy.org/published/workflow?id=9938a81fb6911412, https://usegalaxy.org/published/workflow?id=995cc428eace3bc4, https://usegalaxy.org/published/workflow?id=9990b6e2facf6dca, https://usegalaxy.org/published/workflow?id=99bc7ba3faa7ed55, https://usegalaxy.org/published/workflow?id=99ee567c092fb34c, https://usegalaxy.org/published/workflow?id=9ab68c65337b893b, https://usegalaxy.org/published/workflow?id=9adf8691809326e5, https://usegalaxy.org/published/workflow?id=9b384b774485b2f2, https://usegalaxy.org/published/workflow?id=9bea2e9f45f07f32, https://usegalaxy.org/published/workflow?id=9c022f4028de0bc6, https://usegalaxy.org/published/workflow?id=9c688a2fc8d1bf4e, https://usegalaxy.org/published/workflow?id=9d626a89800a96ca, https://usegalaxy.org/published/workflow?id=9da91815a6588268, https://usegalaxy.org/published/workflow?id=9da9ddae8d5dc92f, https://usegalaxy.org/published/workflow?id=9db607d8d1cdcc25, https://usegalaxy.org/published/workflow?id=9ddfdc9d6cacea88, https://usegalaxy.org/published/workflow?id=9ded318097694dbc, https://usegalaxy.org/published/workflow?id=9e1762e46ddf9a85, https://usegalaxy.org/published/workflow?id=9e9a027e0c294a79, https://usegalaxy.org/published/workflow?id=9eb29b71d7effefc, https://usegalaxy.org/published/workflow?id=9ecfaa613a112d78, https://usegalaxy.org/published/workflow?id=9edc78f665579559, https://usegalaxy.org/published/workflow?id=9f1e8e82fb3e2033, https://usegalaxy.org/published/workflow?id=9f4c4038d1c519e2, https://usegalaxy.org/published/workflow?id=9fc9f1db50019929, https://usegalaxy.org/published/workflow?id=a124d41da896779c, https://usegalaxy.org/published/workflow?id=a164d857439a126f, https://usegalaxy.org/published/workflow?id=a17af8b7b2b39c1a, https://usegalaxy.org/published/workflow?id=a2046dd883227b49, https://usegalaxy.org/published/workflow?id=a253589432a44e5a, https://usegalaxy.org/published/workflow?id=a2b4a868fa9795d1, https://usegalaxy.org/published/workflow?id=a3ff7dbfadbd96e2, https://usegalaxy.org/published/workflow?id=a4a56efb37d845bf, https://usegalaxy.org/published/workflow?id=a4a6d6846c1692f9, https://usegalaxy.org/published/workflow?id=a5bdab0b219b3797, https://usegalaxy.org/published/workflow?id=a638e12411586555, https://usegalaxy.org/published/workflow?id=a63d3ee4a2a4a20b, https://usegalaxy.org/published/workflow?id=a71fcbc60caae8b6, https://usegalaxy.org/published/workflow?id=a737766dd083b280, https://usegalaxy.org/published/workflow?id=a89def2c2462674a, https://usegalaxy.org/published/workflow?id=a89eaad3f42ec41c, https://usegalaxy.org/published/workflow?id=a8a38b594183db2b, https://usegalaxy.org/published/workflow?id=a8e0f77cd6ef49f9, https://usegalaxy.org/published/workflow?id=a8e5adb65d064641, https://usegalaxy.org/published/workflow?id=a8f633b79b20c760, https://usegalaxy.org/published/workflow?id=a97c694b3298ae44, https://usegalaxy.org/published/workflow?id=a986e4991fc61c92, https://usegalaxy.org/published/workflow?id=a99a938953be5fd6, https://usegalaxy.org/published/workflow?id=aac2ae0419f7d515, https://usegalaxy.org/published/workflow?id=aaec757e04605d3a, https://usegalaxy.org/published/workflow?id=ab0be4897d5355ac, https://usegalaxy.org/published/workflow?id=ab490af27c9ccc80, https://usegalaxy.org/published/workflow?id=ab6e4277fc825c5d, https://usegalaxy.org/published/workflow?id=abf1aec0f3d48d03, https://usegalaxy.org/published/workflow?id=ac19037db14fd2de, https://usegalaxy.org/published/workflow?id=ac3755c1ae5f7f16, https://usegalaxy.org/published/workflow?id=ac87b6133de6a03f, https://usegalaxy.org/published/workflow?id=acada5044d64a30a, https://usegalaxy.org/published/workflow?id=acae55e8f37fea59, https://usegalaxy.org/published/workflow?id=ace738014a7278b0, https://usegalaxy.org/published/workflow?id=ad19db6504b6dc33, https://usegalaxy.org/published/workflow?id=ad6143e2f74e1e94, https://usegalaxy.org/published/workflow?id=adb86df9061dca2b, https://usegalaxy.org/published/workflow?id=adbed5c956a71543, https://usegalaxy.org/published/workflow?id=adca3f2ca63730fe, https://usegalaxy.org/published/workflow?id=ae1de4267e4da154, https://usegalaxy.org/published/workflow?id=ae5327f6f30b6138, https://usegalaxy.org/published/workflow?id=ae83fb92e697e009, https://usegalaxy.org/published/workflow?id=af5d714396856e9a, https://usegalaxy.org/published/workflow?id=af71519c81429287, https://usegalaxy.org/published/workflow?id=af85a2ae187409f4, https://usegalaxy.org/published/workflow?id=afa89bb0e8966753, https://usegalaxy.org/published/workflow?id=afb67b4b9952f57d, https://usegalaxy.org/published/workflow?id=afd7633a34d68704, https://usegalaxy.org/published/workflow?id=affdc1bf42475cc9, https://usegalaxy.org/published/workflow?id=b094b6e1e7d48416, https://usegalaxy.org/published/workflow?id=b0b6dfa166b0d873, https://usegalaxy.org/published/workflow?id=b1004c9974ceb785, https://usegalaxy.org/published/workflow?id=b12f99e2233fcca6, https://usegalaxy.org/published/workflow?id=b16a1642e2cd54a2, https://usegalaxy.org/published/workflow?id=b19a9163c26f1270, https://usegalaxy.org/published/workflow?id=b1b4fc510099d592, https://usegalaxy.org/published/workflow?id=b1cfa3c239ef2523, https://usegalaxy.org/published/workflow?id=b1dc9cf054a63be5, https://usegalaxy.org/published/workflow?id=b232caf4a1e1b7ee, https://usegalaxy.org/published/workflow?id=b28789b6a0e1f5c9, https://usegalaxy.org/published/workflow?id=b34ba9b2e4d8f050, https://usegalaxy.org/published/workflow?id=b3823d276917baf0, https://usegalaxy.org/published/workflow?id=b3c8d64eca750ecf, https://usegalaxy.org/published/workflow?id=b4d57f2aa0678ad2, https://usegalaxy.org/published/workflow?id=b50f2446d5e60334, https://usegalaxy.org/published/workflow?id=b5e8f4a0ff226921, https://usegalaxy.org/published/workflow?id=b63d1e1024cc3295, https://usegalaxy.org/published/workflow?id=b661fb850c4b4b01, https://usegalaxy.org/published/workflow?id=b6d535f210efa18e, https://usegalaxy.org/published/workflow?id=b6d90898e2db6aba, https://usegalaxy.org/published/workflow?id=b76c55dafd44b305, https://usegalaxy.org/published/workflow?id=b78a75ae89ae4c79, https://usegalaxy.org/published/workflow?id=b7b69aaee5202144, https://usegalaxy.org/published/workflow?id=b7c67632a6eabda5, https://usegalaxy.org/published/workflow?id=b7ec8d79dc563a93, https://usegalaxy.org/published/workflow?id=b7fe3873ee5e3a02, https://usegalaxy.org/published/workflow?id=b86d24a103181742, https://usegalaxy.org/published/workflow?id=b893662378ed3da0, https://usegalaxy.org/published/workflow?id=b8ed069eea7879e7, https://usegalaxy.org/published/workflow?id=b93a475af82a3d36, https://usegalaxy.org/published/workflow?id=b9d8a7ee3f5a3f67, https://usegalaxy.org/published/workflow?id=ba5889301928907f, https://usegalaxy.org/published/workflow?id=ba68fd4b4348e63c, https://usegalaxy.org/published/workflow?id=baab0758f2240225, https://usegalaxy.org/published/workflow?id=bae2d6b436cd80ef, https://usegalaxy.org/published/workflow?id=bb1cb6abfe84a646, https://usegalaxy.org/published/workflow?id=bb25ac3ba4863424, https://usegalaxy.org/published/workflow?id=bbc894a79eb0e769, https://usegalaxy.org/published/workflow?id=bbe958a8c0bf4955, https://usegalaxy.org/published/workflow?id=bc461addefad698a, https://usegalaxy.org/published/workflow?id=bcb798fb718968ce, https://usegalaxy.org/published/workflow?id=bd2ce9a97c1598df, https://usegalaxy.org/published/workflow?id=bd355e8ce58a139e, https://usegalaxy.org/published/workflow?id=bd3bed78eb99e294, https://usegalaxy.org/published/workflow?id=bd587951f475533a, https://usegalaxy.org/published/workflow?id=bd6bfd338ffb9637, https://usegalaxy.org/published/workflow?id=be46c5bb8c06a470, https://usegalaxy.org/published/workflow?id=be54e57345ce7ca5, https://usegalaxy.org/published/workflow?id=bf1af666d4ea21e4, https://usegalaxy.org/published/workflow?id=bf3ccae8d5b6ef58, https://usegalaxy.org/published/workflow?id=bf3f71a748d88490, https://usegalaxy.org/published/workflow?id=bf79271a438ffa54, https://usegalaxy.org/published/workflow?id=bfd2e7e63d3e6856, https://usegalaxy.org/published/workflow?id=bfd3ba54576d2d81, https://usegalaxy.org/published/workflow?id=bfef75672b9c3ea4, https://usegalaxy.org/published/workflow?id=c0746df296544a3a, https://usegalaxy.org/published/workflow?id=c07476a937b4e52e, https://usegalaxy.org/published/workflow?id=c09b8a0c96123cbb, https://usegalaxy.org/published/workflow?id=c0a108e53ab05b0d, https://usegalaxy.org/published/workflow?id=c0a9a2d53b8660de, https://usegalaxy.org/published/workflow?id=c12e6b7896f8e114, https://usegalaxy.org/published/workflow?id=c1339c998a55431c, https://usegalaxy.org/published/workflow?id=c156e67ad1ae4a97, https://usegalaxy.org/published/workflow?id=c17fa637bcdec86e, https://usegalaxy.org/published/workflow?id=c1ec12905944ca7b, https://usegalaxy.org/published/workflow?id=c20a68563e80d401, https://usegalaxy.org/published/workflow?id=c24cfddfc88a97a3, https://usegalaxy.org/published/workflow?id=c2898d28a3b380d6, https://usegalaxy.org/published/workflow?id=c2b299627d2baf48, https://usegalaxy.org/published/workflow?id=c30bfd545ef3a228, https://usegalaxy.org/published/workflow?id=c3ea8fa3bb202dc6, https://usegalaxy.org/published/workflow?id=c478d8de43a3f30f, https://usegalaxy.org/published/workflow?id=c4ac09605633655c, https://usegalaxy.org/published/workflow?id=c57f70d686b6062e, https://usegalaxy.org/published/workflow?id=c5f4b7b2463f338b, https://usegalaxy.org/published/workflow?id=c66e2738f37a8c16, https://usegalaxy.org/published/workflow?id=c69f8c26ec5fb8a6, https://usegalaxy.org/published/workflow?id=c707871e1dc9e21d, https://usegalaxy.org/published/workflow?id=c712b85a55da2a2d, https://usegalaxy.org/published/workflow?id=c74e3a24751d9924, https://usegalaxy.org/published/workflow?id=c75acc1ab44c121f, https://usegalaxy.org/published/workflow?id=c7693951c6215e19, https://usegalaxy.org/published/workflow?id=c7b2d2ccc4b0dec5, https://usegalaxy.org/published/workflow?id=c81833a367445f98, https://usegalaxy.org/published/workflow?id=c8f9e048ddae7d03, https://usegalaxy.org/published/workflow?id=c9474fcce2a21188, https://usegalaxy.org/published/workflow?id=c96b12be162f744b, https://usegalaxy.org/published/workflow?id=c978366ac25fed40, https://usegalaxy.org/published/workflow?id=c983ea8a32662cd6, https://usegalaxy.org/published/workflow?id=ca36eebd59575df3, https://usegalaxy.org/published/workflow?id=cace9f1359874352, https://usegalaxy.org/published/workflow?id=cb011900fc0ee12a, https://usegalaxy.org/published/workflow?id=cb03300161109123, https://usegalaxy.org/published/workflow?id=cb4ccd3068819418, https://usegalaxy.org/published/workflow?id=cb7c638fed3ed697, https://usegalaxy.org/published/workflow?id=cb810cdaa4915f4b, https://usegalaxy.org/published/workflow?id=cbbd7e95041d9429, https://usegalaxy.org/published/workflow?id=cc50da71cdf6f244, https://usegalaxy.org/published/workflow?id=ccb66f80518daba3, https://usegalaxy.org/published/workflow?id=cce88bc57b180d09, https://usegalaxy.org/published/workflow?id=cd1badac800122c2, https://usegalaxy.org/published/workflow?id=cd4d88429f096fbc, https://usegalaxy.org/published/workflow?id=cd5f803c80875b9c, https://usegalaxy.org/published/workflow?id=cd824d8631d6a55e, https://usegalaxy.org/published/workflow?id=cdf5dffbed938d49, https://usegalaxy.org/published/workflow?id=ce4d4397eb8a5298, https://usegalaxy.org/published/workflow?id=ce815d36cbb57304, https://usegalaxy.org/published/workflow?id=cf21a13f09fcc070, https://usegalaxy.org/published/workflow?id=cf3320614654adfe, https://usegalaxy.org/published/workflow?id=cf9069dd5d24d58f, https://usegalaxy.org/published/workflow?id=cfa7c3d7e69e91d7, https://usegalaxy.org/published/workflow?id=cfd5dc3c7bc1e832, https://usegalaxy.org/published/workflow?id=d00ac64dcd07f91a, https://usegalaxy.org/published/workflow?id=d02b4d7483936b73, https://usegalaxy.org/published/workflow?id=d08135fa13d1745e, https://usegalaxy.org/published/workflow?id=d1ca40dd7e591025, https://usegalaxy.org/published/workflow?id=d2759906e4124964, https://usegalaxy.org/published/workflow?id=d2c408df40dc311b, https://usegalaxy.org/published/workflow?id=d2dec03b33af1b2f, https://usegalaxy.org/published/workflow?id=d2e8a6b39fe88f4c, https://usegalaxy.org/published/workflow?id=d341660f3d1ce8bf, https://usegalaxy.org/published/workflow?id=d3428dd172a78102, https://usegalaxy.org/published/workflow?id=d3f35215e6f45d79, https://usegalaxy.org/published/workflow?id=d4029ce1344e874a, https://usegalaxy.org/published/workflow?id=d485bf21a5069fe4, https://usegalaxy.org/published/workflow?id=d4b2b85db47c405e, https://usegalaxy.org/published/workflow?id=d4ea6cdd40522eb1, https://usegalaxy.org/published/workflow?id=d50b2df115706adb, https://usegalaxy.org/published/workflow?id=d5514e327878b531, https://usegalaxy.org/published/workflow?id=d6cf3be79a4b7db4, https://usegalaxy.org/published/workflow?id=d768a4a06d3b1a90, https://usegalaxy.org/published/workflow?id=d7e14ff032a6ac4f, https://usegalaxy.org/published/workflow?id=d8afd017905d6702, https://usegalaxy.org/published/workflow?id=d903c7215a88c79f, https://usegalaxy.org/published/workflow?id=d96bd5c9fb553f2c, https://usegalaxy.org/published/workflow?id=d9840d6ecf2b4d2f, https://usegalaxy.org/published/workflow?id=daaded719dcfd53b, https://usegalaxy.org/published/workflow?id=dae5d5e5df5c4dd7, https://usegalaxy.org/published/workflow?id=db7989d9479c80aa, https://usegalaxy.org/published/workflow?id=dbc650d226e89013, https://usegalaxy.org/published/workflow?id=dbdc894ad54675a8, https://usegalaxy.org/published/workflow?id=dc006ebf798f1f2f, https://usegalaxy.org/published/workflow?id=dcbc71347300822d, https://usegalaxy.org/published/workflow?id=dcc7c5fdef8780fd, https://usegalaxy.org/published/workflow?id=dcf658333596d76a, https://usegalaxy.org/published/workflow?id=ddb737f2ad0589e8, https://usegalaxy.org/published/workflow?id=ddf222b797082436, https://usegalaxy.org/published/workflow?id=de208a900880dcdc, https://usegalaxy.org/published/workflow?id=de24e5678f541584, https://usegalaxy.org/published/workflow?id=de2861cdbd4e29ce, https://usegalaxy.org/published/workflow?id=de29cd965a2e93d3, https://usegalaxy.org/published/workflow?id=dec0cf06fa059e65, https://usegalaxy.org/published/workflow?id=deea71ccac30c7ea, https://usegalaxy.org/published/workflow?id=df1fa0b73f741a9c, https://usegalaxy.org/published/workflow?id=df24d76ebf13e3c1, https://usegalaxy.org/published/workflow?id=df8b49863e83824d, https://usegalaxy.org/published/workflow?id=dff3cf6921b3d4d6, https://usegalaxy.org/published/workflow?id=e0ec503626fa0d58, https://usegalaxy.org/published/workflow?id=e12296df7cf33c69, https://usegalaxy.org/published/workflow?id=e12e642b88a0fe08, https://usegalaxy.org/published/workflow?id=e133a816f99ba43d, https://usegalaxy.org/published/workflow?id=e1aad86fdf9e6616, https://usegalaxy.org/published/workflow?id=e282f505ba9f729f, https://usegalaxy.org/published/workflow?id=e2c77aeabb8053b4, https://usegalaxy.org/published/workflow?id=e31abcc04c5c69bc, https://usegalaxy.org/published/workflow?id=e325b97b81b10edb, https://usegalaxy.org/published/workflow?id=e336bca259abd474, https://usegalaxy.org/published/workflow?id=e33f6a058c5f57e5, https://usegalaxy.org/published/workflow?id=e3e646407e3f921d, https://usegalaxy.org/published/workflow?id=e42a07b777c9f9dc, https://usegalaxy.org/published/workflow?id=e4dd39237df58884, https://usegalaxy.org/published/workflow?id=e4f1cce653812a22, https://usegalaxy.org/published/workflow?id=e500078649dd026c, https://usegalaxy.org/published/workflow?id=e50e36a25bae863c, https://usegalaxy.org/published/workflow?id=e53b695ff681b675, https://usegalaxy.org/published/workflow?id=e57d595b0cde1614, https://usegalaxy.org/published/workflow?id=e58a87508a337b91, https://usegalaxy.org/published/workflow?id=e5f79f576548f7c5, https://usegalaxy.org/published/workflow?id=e6a6223ef5ef85a7, https://usegalaxy.org/published/workflow?id=e7ce46762faccaac, https://usegalaxy.org/published/workflow?id=e7fa48d7fd40908b, https://usegalaxy.org/published/workflow?id=e817b5b275b4952f, https://usegalaxy.org/published/workflow?id=e81a10ac8b20c801, https://usegalaxy.org/published/workflow?id=e887adf3afc3253d, https://usegalaxy.org/published/workflow?id=e899acc664c8b808, https://usegalaxy.org/published/workflow?id=e91350e532c9e554, https://usegalaxy.org/published/workflow?id=e97da2da9e0290a7, https://usegalaxy.org/published/workflow?id=e9927c058ec0661f, https://usegalaxy.org/published/workflow?id=e9aaa56af9d230d6, https://usegalaxy.org/published/workflow?id=e9f4de639f4cfe02, https://usegalaxy.org/published/workflow?id=e9ffad95baa43478, https://usegalaxy.org/published/workflow?id=ea206593698adbfd, https://usegalaxy.org/published/workflow?id=ea248022a4217e0e, https://usegalaxy.org/published/workflow?id=ea3257e0ef9f505a, https://usegalaxy.org/published/workflow?id=ea4c2defce2f5258, https://usegalaxy.org/published/workflow?id=ea5d2401f6711dff, https://usegalaxy.org/published/workflow?id=ea61cd21e3fbad2b, https://usegalaxy.org/published/workflow?id=eab7347464872b4c, https://usegalaxy.org/published/workflow?id=eae5ae951abe6761, https://usegalaxy.org/published/workflow?id=eaf96fa3c39c210b, https://usegalaxy.org/published/workflow?id=eafe4aa62a600e1d, https://usegalaxy.org/published/workflow?id=eb77b976984afa9c, https://usegalaxy.org/published/workflow?id=ebbcdc389aad0eb8, https://usegalaxy.org/published/workflow?id=ebc9aad36017b567, https://usegalaxy.org/published/workflow?id=ebe7f93204402a5a, https://usegalaxy.org/published/workflow?id=ec2f77224324f22e, https://usegalaxy.org/published/workflow?id=ec3d8d5d1531f92e, https://usegalaxy.org/published/workflow?id=ec66767cab0022ee, https://usegalaxy.org/published/workflow?id=ecb279a9114140ab, https://usegalaxy.org/published/workflow?id=eccaebba0605d876, https://usegalaxy.org/published/workflow?id=edf9be785ab9eb65, https://usegalaxy.org/published/workflow?id=ee27581327d147da, https://usegalaxy.org/published/workflow?id=ee3b8d7ba29da11c, https://usegalaxy.org/published/workflow?id=ef6036efe8a03a12, https://usegalaxy.org/published/workflow?id=efe7ca87323773c0, https://usegalaxy.org/published/workflow?id=f062eda543541ba8, https://usegalaxy.org/published/workflow?id=f09033420c6267ab, https://usegalaxy.org/published/workflow?id=f0ee8bcd7c8fadca, https://usegalaxy.org/published/workflow?id=f18946db4c93e88b, https://usegalaxy.org/published/workflow?id=f18e6fa5270fcd37, https://usegalaxy.org/published/workflow?id=f1a54b10d4afce8f, https://usegalaxy.org/published/workflow?id=f1c2d920bd41cebb, https://usegalaxy.org/published/workflow?id=f23e5f333987a89f, https://usegalaxy.org/published/workflow?id=f29d1bcfeaacba04, https://usegalaxy.org/published/workflow?id=f2f633d2b02b6050, https://usegalaxy.org/published/workflow?id=f35ccb693cd874c1, https://usegalaxy.org/published/workflow?id=f3b417763495221b, https://usegalaxy.org/published/workflow?id=f3c8093c5b8a7233, https://usegalaxy.org/published/workflow?id=f4ed1c9434ed0445, https://usegalaxy.org/published/workflow?id=f5200b7bcceed5d6, https://usegalaxy.org/published/workflow?id=f58aa85ceaa19534, https://usegalaxy.org/published/workflow?id=f58c90061c31bd48, https://usegalaxy.org/published/workflow?id=f5bd2da36ab0a870, https://usegalaxy.org/published/workflow?id=f733ad0a6cc50cb9, https://usegalaxy.org/published/workflow?id=f765c8aa4bc3176c, https://usegalaxy.org/published/workflow?id=f794b4b9bb990c80, https://usegalaxy.org/published/workflow?id=f7975ae799daf463, https://usegalaxy.org/published/workflow?id=f7a3567ba6b57c9c, https://usegalaxy.org/published/workflow?id=f7d1c6be4e4c3357, https://usegalaxy.org/published/workflow?id=f88f186bc851e954, https://usegalaxy.org/published/workflow?id=f8d85cda81baa77d, https://usegalaxy.org/published/workflow?id=f8ed1ae9d501bb87, https://usegalaxy.org/published/workflow?id=f93a4f6b5f3aaaed, https://usegalaxy.org/published/workflow?id=f93b5864d6d2659c, https://usegalaxy.org/published/workflow?id=f9cd2289c007f103, https://usegalaxy.org/published/workflow?id=fa226c044fa026ef, https://usegalaxy.org/published/workflow?id=fa26fd51caea53c7, https://usegalaxy.org/published/workflow?id=fa36d9b50e956917, https://usegalaxy.org/published/workflow?id=fa89d2d0edabe803, https://usegalaxy.org/published/workflow?id=fb588edfd343b24d, https://usegalaxy.org/published/workflow?id=fb98ef955b3dbd4b, https://usegalaxy.org/published/workflow?id=fbf75fbb72b488bd, https://usegalaxy.org/published/workflow?id=fc130cb411aa7d06, https://usegalaxy.org/published/workflow?id=fc2b48600853f3ea, https://usegalaxy.org/published/workflow?id=fc7b14aafa0b421e, https://usegalaxy.org/published/workflow?id=fcae9dfcdca70798, https://usegalaxy.org/published/workflow?id=fcbd4767298488b9, https://usegalaxy.org/published/workflow?id=fcbe12fc4eaae12e, https://usegalaxy.org/published/workflow?id=fcc39f74d5cddf12, https://usegalaxy.org/published/workflow?id=fce1837144d3a86e, https://usegalaxy.org/published/workflow?id=fd155fcba9bed7ff, https://usegalaxy.org/published/workflow?id=fd40e50c9f1545ce, https://usegalaxy.org/published/workflow?id=fd75347cfea06651, https://usegalaxy.org/published/workflow?id=fda29ba2b6c98f8b, https://usegalaxy.org/published/workflow?id=fe4c2791508c56ab, https://usegalaxy.org/published/workflow?id=ff3ade25b35f4893, https://usegalaxy.org/published/workflow?id=ffae9c47980a5170, https://usegalaxy.org/published/workflow?id=fff1a5c7475b3eeb, https://workflowhub.eu/workflows/1035?version=1, https://workflowhub.eu/workflows/1054?version=1, https://workflowhub.eu/workflows/1057?version=8, https://workflowhub.eu/workflows/1060?version=1, https://workflowhub.eu/workflows/1062?version=1, https://workflowhub.eu/workflows/1063?version=5, https://workflowhub.eu/workflows/1096?version=2, https://workflowhub.eu/workflows/109?version=9, https://workflowhub.eu/workflows/1103?version=3, https://workflowhub.eu/workflows/1104?version=2, https://workflowhub.eu/workflows/110?version=11, https://workflowhub.eu/workflows/111?version=5, https://workflowhub.eu/workflows/117?version=1, https://workflowhub.eu/workflows/1189?version=2, https://workflowhub.eu/workflows/1190?version=1, https://workflowhub.eu/workflows/1201?version=4, https://workflowhub.eu/workflows/1207?version=2, https://workflowhub.eu/workflows/1208?version=1, https://workflowhub.eu/workflows/1218?version=1, https://workflowhub.eu/workflows/1225?version=1, https://workflowhub.eu/workflows/123?version=1, https://workflowhub.eu/workflows/1256?version=1, https://workflowhub.eu/workflows/1258?version=1, https://workflowhub.eu/workflows/1259?version=1, https://workflowhub.eu/workflows/1260?version=2, https://workflowhub.eu/workflows/1267?version=1, https://workflowhub.eu/workflows/1269?version=2, https://workflowhub.eu/workflows/1270?version=2, https://workflowhub.eu/workflows/1271?version=3, https://workflowhub.eu/workflows/1272?version=2, https://workflowhub.eu/workflows/1273?version=2, https://workflowhub.eu/workflows/1274?version=2, https://workflowhub.eu/workflows/1275?version=2, https://workflowhub.eu/workflows/1296?version=2, https://workflowhub.eu/workflows/1327?version=6, https://workflowhub.eu/workflows/1352?version=3, https://workflowhub.eu/workflows/1353?version=2, https://workflowhub.eu/workflows/1356?version=1, https://workflowhub.eu/workflows/1369?version=1, https://workflowhub.eu/workflows/1388?version=1, https://workflowhub.eu/workflows/1392?version=1, https://workflowhub.eu/workflows/1395?version=2, https://workflowhub.eu/workflows/1396?version=1, https://workflowhub.eu/workflows/1397?version=1, https://workflowhub.eu/workflows/1402?version=1, https://workflowhub.eu/workflows/1403?version=1, https://workflowhub.eu/workflows/1405?version=1, https://workflowhub.eu/workflows/1407?version=1, https://workflowhub.eu/workflows/1417?version=1, https://workflowhub.eu/workflows/1425?version=1, https://workflowhub.eu/workflows/1426?version=1, https://workflowhub.eu/workflows/1427?version=1, https://workflowhub.eu/workflows/1430?version=1, https://workflowhub.eu/workflows/1435?version=1, https://workflowhub.eu/workflows/1437?version=1, https://workflowhub.eu/workflows/1441?version=1, https://workflowhub.eu/workflows/1442?version=1, https://workflowhub.eu/workflows/1447?version=2, https://workflowhub.eu/workflows/1448?version=1, https://workflowhub.eu/workflows/1449?version=1, https://workflowhub.eu/workflows/1450?version=1, https://workflowhub.eu/workflows/1455?version=1, https://workflowhub.eu/workflows/1456?version=2, https://workflowhub.eu/workflows/1464?version=1, https://workflowhub.eu/workflows/1466?version=2, https://workflowhub.eu/workflows/1469?version=1, https://workflowhub.eu/workflows/1473?version=1, https://workflowhub.eu/workflows/1475?version=1, https://workflowhub.eu/workflows/1478?version=1, https://workflowhub.eu/workflows/1479?version=1, https://workflowhub.eu/workflows/1480?version=1, https://workflowhub.eu/workflows/1484?version=1, https://workflowhub.eu/workflows/1486?version=1, https://workflowhub.eu/workflows/1487?version=2, https://workflowhub.eu/workflows/1489?version=1, https://workflowhub.eu/workflows/1493?version=1, https://workflowhub.eu/workflows/1495?version=1, https://workflowhub.eu/workflows/1506?version=1, https://workflowhub.eu/workflows/1513?version=1, https://workflowhub.eu/workflows/1520?version=1, https://workflowhub.eu/workflows/1524?version=1, https://workflowhub.eu/workflows/1530?version=1, https://workflowhub.eu/workflows/1535?version=1, https://workflowhub.eu/workflows/1536?version=1, https://workflowhub.eu/workflows/1539?version=1, https://workflowhub.eu/workflows/1541?version=1, https://workflowhub.eu/workflows/1542?version=1, https://workflowhub.eu/workflows/1543?version=1, https://workflowhub.eu/workflows/1544?version=1, https://workflowhub.eu/workflows/1550?version=1, https://workflowhub.eu/workflows/1552?version=1, https://workflowhub.eu/workflows/1556?version=1, https://workflowhub.eu/workflows/1558?version=1, https://workflowhub.eu/workflows/155?version=5, https://workflowhub.eu/workflows/1564?version=1, https://workflowhub.eu/workflows/1565?version=1, https://workflowhub.eu/workflows/1566?version=1, https://workflowhub.eu/workflows/1567?version=1, https://workflowhub.eu/workflows/1569?version=1, https://workflowhub.eu/workflows/1575?version=1, https://workflowhub.eu/workflows/1594?version=1, https://workflowhub.eu/workflows/1597?version=1, https://workflowhub.eu/workflows/1601?version=1, https://workflowhub.eu/workflows/1607?version=1, https://workflowhub.eu/workflows/1618?version=1, https://workflowhub.eu/workflows/1623?version=1, https://workflowhub.eu/workflows/1628?version=1, https://workflowhub.eu/workflows/1629?version=1, https://workflowhub.eu/workflows/1631?version=1, https://workflowhub.eu/workflows/1636?version=1, https://workflowhub.eu/workflows/1638?version=1, https://workflowhub.eu/workflows/1641?version=1, https://workflowhub.eu/workflows/1645?version=1, https://workflowhub.eu/workflows/1647?version=1, https://workflowhub.eu/workflows/1651?version=1, https://workflowhub.eu/workflows/1653?version=1, https://workflowhub.eu/workflows/1656?version=1, https://workflowhub.eu/workflows/1665?version=1, https://workflowhub.eu/workflows/1671?version=1, https://workflowhub.eu/workflows/1678?version=1, https://workflowhub.eu/workflows/1680?version=1, https://workflowhub.eu/workflows/1682?version=1, https://workflowhub.eu/workflows/1684?version=1, https://workflowhub.eu/workflows/1686?version=1, https://workflowhub.eu/workflows/1687?version=1, https://workflowhub.eu/workflows/1688?version=1, https://workflowhub.eu/workflows/1691?version=1, https://workflowhub.eu/workflows/1696?version=1, https://workflowhub.eu/workflows/1698?version=1, https://workflowhub.eu/workflows/1699?version=1, https://workflowhub.eu/workflows/1703?version=1, https://workflowhub.eu/workflows/1706?version=1, https://workflowhub.eu/workflows/1707?version=1, https://workflowhub.eu/workflows/1708?version=1, https://workflowhub.eu/workflows/1713?version=1, https://workflowhub.eu/workflows/1715?version=1, https://workflowhub.eu/workflows/1745?version=2, https://workflowhub.eu/workflows/1788?version=1, https://workflowhub.eu/workflows/1792?version=1, https://workflowhub.eu/workflows/1794?version=1, https://workflowhub.eu/workflows/247?version=2, https://workflowhub.eu/workflows/248?version=4, https://workflowhub.eu/workflows/249?version=4, https://workflowhub.eu/workflows/354?version=1, https://workflowhub.eu/workflows/358?version=1, https://workflowhub.eu/workflows/363?version=2, https://workflowhub.eu/workflows/394?version=1, https://workflowhub.eu/workflows/395?version=15, https://workflowhub.eu/workflows/397?version=14, https://workflowhub.eu/workflows/398?version=15, https://workflowhub.eu/workflows/399?version=19, https://workflowhub.eu/workflows/400?version=12, https://workflowhub.eu/workflows/401?version=13, https://workflowhub.eu/workflows/403?version=9, https://workflowhub.eu/workflows/439?version=3, https://workflowhub.eu/workflows/468?version=3, https://workflowhub.eu/workflows/470?version=1, https://workflowhub.eu/workflows/512?version=2, https://workflowhub.eu/workflows/513?version=3, https://workflowhub.eu/workflows/519?version=1, https://workflowhub.eu/workflows/53?version=1, https://workflowhub.eu/workflows/561?version=11, https://workflowhub.eu/workflows/603?version=2, https://workflowhub.eu/workflows/607?version=1, https://workflowhub.eu/workflows/612?version=23, https://workflowhub.eu/workflows/622?version=11, https://workflowhub.eu/workflows/625?version=23, https://workflowhub.eu/workflows/628?version=1, https://workflowhub.eu/workflows/629?version=1, https://workflowhub.eu/workflows/633?version=21, https://workflowhub.eu/workflows/641?version=25, https://workflowhub.eu/workflows/642?version=23, https://workflowhub.eu/workflows/643?version=5, https://workflowhub.eu/workflows/645?version=12, https://workflowhub.eu/workflows/646?version=2, https://workflowhub.eu/workflows/660?version=1, https://workflowhub.eu/workflows/662?version=1, https://workflowhub.eu/workflows/676?version=1, https://workflowhub.eu/workflows/689?version=1, https://workflowhub.eu/workflows/694?version=7, https://workflowhub.eu/workflows/698?version=1, https://workflowhub.eu/workflows/751?version=16, https://workflowhub.eu/workflows/758?version=1, https://workflowhub.eu/workflows/761?version=1, https://workflowhub.eu/workflows/762?version=1, https://workflowhub.eu/workflows/763?version=1, https://workflowhub.eu/workflows/764?version=1, https://workflowhub.eu/workflows/794?version=2, https://workflowhub.eu/workflows/876?version=1, https://workflowhub.eu/workflows/878?version=1, https://workflowhub.eu/workflows/879?version=1, https://workflowhub.eu/workflows/880?version=1, https://workflowhub.eu/workflows/888?version=2 |
assembly/ERGA-post-assembly-QC, assembly/assembly-decontamination, assembly/ecoli_comparison, assembly/metagenomics-assembly, assembly/vgp_genome_assembly, climate/climate-101, climate/fates, computational-chemistry/cheminformatics, computational-chemistry/htmd-analysis, computational-chemistry/md-simulation-gromacs, computational-chemistry/zauberkugel, contributing/create-new-tutorial, data-science/data-manipulation-olympics, digital-humanities/text_mining_chinese, ecology/Ecoregionalization_tutorial, ecology/PAMPA-toolsuite-tutorial, ecology/biodiversity-data-exploration, ecology/ecoregiolifetraits, ecology/obisindicators, ecology/phylogeny-data-prep, ecology/ref-based-rad-seq, ecology/regionalGAM, ecology/species-distribution-modeling, epigenetics/atac-seq, epigenetics/methylation-seq, evolution/mtb_transmission, galaxy-interface/ncbi-sarf, galaxy-interface/workflow-editor, galaxy-interface/workflow-parameters, galaxy-interface/workflow-reports, genome-annotation/bacterial-genome-annotation, genome-annotation/crispr-screen, genome-annotation/hpc-for-lsgc, genome-annotation/lncrna, genome-annotation/secondary-metabolite-discovery, genome-annotation/tnseq, introduction/data-manipulation-olympics, introduction/galaxy-intro-101, introduction/galaxy-intro-101-everyone, introduction/galaxy-intro-peaks2genes, introduction/galaxy-intro-strands, introduction/galaxy-reproduce, metabolomics/qcxms-predictions, microbiome/clinical-mp-2-discovery, microbiome/clinical-mp-3-verification, microbiome/dada-16S, microbiome/metagenomics-assembly, microbiome/metaplasmidome_query, microbiome/metatranscriptomics, microbiome/metatranscriptomics-short, microbiome/nanopore-16S-metagenomics, microbiome/pathogen-detection-from-nanopore-foodborne-data, proteomics/biomarker_selection, proteomics/clinical-mp-2-discovery, proteomics/clinical-mp-3-verification, proteomics/mass-spectrometry-imaging-loading-exploring-data, proteomics/maxquant-label-free, proteomics/maxquant-msstats-dda-lfq, proteomics/metaquantome-data-creation, proteomics/multiGSEA-tutorial, proteomics/neoantigen-fusion-database-generation, proteomics/neoantigen-non-reference-database-generation, proteomics/neoantigen-predicting-hla-binding, proteomics/protein-quant-sil, proteomics/proteogenomics-dbcreation, proteomics/secretome-prediction, sequence-analysis/human-reads-removal, single-cell/EBI-retrieval, single-cell/bulk-deconvolution-evaluate, single-cell/bulk-music-2-preparescref, single-cell/bulk-music-3-preparebulk, single-cell/pseudobulk-analysis, single-cell/scatac-preprocessing-tenx, single-cell/scrna-case_alevin-combine-datasets, single-cell/scrna-case_cell-cycle, single-cell/scrna-case_monocle3-trajectories, single-cell/scrna-data-ingest, single-cell/scrna-ncbi-anndata, single-cell/scrna-preprocessing, single-cell/scrna-raceid, statistics/fruit_360, transcriptomics/clipseq, transcriptomics/differential-isoform-expression, transcriptomics/minerva-pathways, transcriptomics/ref-based, transcriptomics/rna-seq-analysis-clustering-viz, transcriptomics/rna-seq-counts-to-genes, transcriptomics/rna-seq-genes-to-pathways, transcriptomics/small_ncrna_clustering, variant-analysis/aiv-analysis, variant-analysis/baculovirus-isolate-variation, variant-analysis/mapping-by-sequencing, variant-analysis/sars-cov-2, variant-analysis/somatic-variant-discovery, variant-analysis/somatic-variants, variant-analysis/tb-variant-analysis, variant-analysis/trio-analysis |
|
tgsgapcloser |
tgsgapcloser |
TGS-GapCloser uses error-prone long reads or preassembled contigs to fill N-gap in the genome assembly. |
2021-11-14 |
https://github.com/BGI-Qingdao/TGS-GapCloser |
1.0.3 |
tgsgapcloser |
1.2.1 |
To update |
Assembly |
Genome assembly, Read mapping, Scaffolding, Localised reassembly |
Genome assembly, Read mapping, Scaffolding, Localised reassembly |
Sequencing, Sequence assembly, Phylogeny, Transcription factors and regulatory sites, Mapping |
Sequencing, Sequence assembly, Phylogeny, Transcription factors and regulatory sites, Mapping |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/tgsgapcloser |
https://github.com/bgruening/galaxytools/tree/master/tools/tgsgapcloser |
TGS-GapCloser |
TGS-GapCloser |
TGS-GapCloser is a fast and accurately passing through the Bermuda in large genome using error-prone third-generation long reads. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
53 |
53 |
552 |
552 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
552 |
552 |
53 |
53 |
|
|
|
tiara |
tiara |
Tool for identification of eukaryotic sequences in the metagenomic datasets. |
2024-05-23 |
https://github.com/ibe-uw/tiara |
1.0.3 |
tiara |
|
To update |
Metagenomics, Sequence Analysis |
Genome comparison, Data retrieval, Variant calling, Genome visualisation, Structural variation detection |
Genome comparison, Data retrieval, Variant calling, Genome visualisation, Structural variation detection |
Sequencing, Genomics, DNA polymorphism, DNA structural variation |
Sequencing, Genomics, DNA polymorphism |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/tiara |
https://github.com/bgruening/galaxytools/tree/master/tools/tiara |
Tiara |
TIARA |
Total Integrated Archive of Short-Read and Array (TIARA) database, contains personal genomic information obtained from next generation sequencing (NGS) techniques and ultra-high-resolution comparative genomic hybridization (CGH) arrays. This database improves the accuracy of detecting personal genomic variations, such as SNPs, short indels and structural variants (SVs). |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
16 |
16 |
296 |
296 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
296 |
296 |
16 |
16 |
|
|
|
tmhmm_and_signalp |
promoter2, Psortb, rxlr_motifs, signalp3, tmhmm2, wolf_psort |
TMHMM, SignalP, Promoter, RXLR motifs, WoLF PSORT and PSORTb |
2010-10-21 |
https://github.com/peterjc/pico_galaxy/tree/master/tools/protein_analysis |
0.0.13 |
promoter |
|
To update |
Sequence Analysis |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/protein_analysis |
https://github.com/peterjc/pico_galaxy/tree/master/tools/protein_analysis |
|
|
|
|
0 |
0 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
6 |
6 |
0 |
468 |
507 |
12344 |
13651 |
1 |
1 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
6 |
13659 |
12346 |
509 |
469 |
https://dev.workflowhub.eu/workflows/1035?version=1, https://dev.workflowhub.eu/workflows/1143?version=2, https://usegalaxy.eu/published/workflow?id=3280dc48d768b46a, https://usegalaxy.eu/published/workflow?id=33312e5643279e8a, https://usegalaxy.eu/published/workflow?id=7f6950394a8c9c4a, https://usegalaxy.eu/published/workflow?id=a018307be3563f28, https://usegalaxy.eu/published/workflow?id=cde27d06b74ad2fd, https://workflowhub.eu/workflows/1417?version=1 |
proteomics/secretome-prediction |
|
tophat |
tophat |
Tophat for Illumina |
2014-01-27 |
|
1.5.0 |
samtools |
1.22.1 |
To update |
RNA, Next Gen Mappers |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/tophat |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/tophat |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
24 |
7228 |
123 |
66524 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
66525 |
123 |
7229 |
24 |
https://usegalaxy.org/published/workflow?id=035c28a247976f2c, https://usegalaxy.org/published/workflow?id=0599241ce8eae217, https://usegalaxy.org/published/workflow?id=0bddfc0618e59d02, https://usegalaxy.org/published/workflow?id=3686146fc097c66f, https://usegalaxy.org/published/workflow?id=41b181f1d763e419, https://usegalaxy.org/published/workflow?id=462261c5e22635f0, https://usegalaxy.org/published/workflow?id=486ee20613d58dcf, https://usegalaxy.org/published/workflow?id=61b7ad6588f7db41, https://usegalaxy.org/published/workflow?id=62401f33a369bac0, https://usegalaxy.org/published/workflow?id=712d9ae42b45c4b9, https://usegalaxy.org/published/workflow?id=7253824f78a90431, https://usegalaxy.org/published/workflow?id=77e4bb9d6aea0c9a, https://usegalaxy.org/published/workflow?id=7c3b5398dd05a6a5, https://usegalaxy.org/published/workflow?id=a24092b7f00b4e2a, https://usegalaxy.org/published/workflow?id=a57db139837dd24c, https://usegalaxy.org/published/workflow?id=b5c79535c499bc58, https://usegalaxy.org/published/workflow?id=eae740bac11ecc91, https://usegalaxy.org/published/workflow?id=fcce98489c8ca7a3 |
|
|
tophat2 |
tophat2 |
Tophat - fast splice junction mapper for RNA-Seq reads |
2014-01-27 |
http://ccb.jhu.edu/software/tophat/index.shtml |
2.1.1 |
bowtie2 |
2.5.4 |
To update |
RNA, Next Gen Mappers |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/tophat2 |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/tophat2 |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
1 |
1 |
1 |
0 |
1038 |
1759 |
14952 |
27721 |
7697 |
28159 |
75300 |
345961 |
393 |
1035 |
4936 |
14370 |
0 |
0 |
0 |
0 |
388052 |
95188 |
30953 |
9128 |
https://usegalaxy.eu/published/workflow?id=0ab3e47ebd3b520e, https://usegalaxy.eu/published/workflow?id=5be158931abca947, https://usegalaxy.eu/published/workflow?id=60f2a8721e203057, https://usegalaxy.eu/published/workflow?id=eb3cfa4d1f05fc0e, https://usegalaxy.org.au/published/workflow?id=0427bd5f28789a1f, https://usegalaxy.org.au/published/workflow?id=115896e8f4059e44, https://usegalaxy.org.au/published/workflow?id=126116a92f2e9a68, https://usegalaxy.org.au/published/workflow?id=1624a678c6791ca6, https://usegalaxy.org.au/published/workflow?id=189c584ea4bde59a, https://usegalaxy.org.au/published/workflow?id=1ac197bae296b2bf, https://usegalaxy.org.au/published/workflow?id=2a97585556d53a43, https://usegalaxy.org.au/published/workflow?id=39bb22274ede7500, https://usegalaxy.org.au/published/workflow?id=427e27f87b8048a3, https://usegalaxy.org.au/published/workflow?id=50fdbdb8f807c021, https://usegalaxy.org.au/published/workflow?id=52d2fb868defa474, https://usegalaxy.org.au/published/workflow?id=581c455f74aa55a4, https://usegalaxy.org.au/published/workflow?id=60c5675ed2f4a7d8, https://usegalaxy.org.au/published/workflow?id=73854e391eec51d0, https://usegalaxy.org.au/published/workflow?id=79572be1bf642251, https://usegalaxy.org.au/published/workflow?id=7a63fff9a122e60c, https://usegalaxy.org.au/published/workflow?id=80a1493fb9593bb3, https://usegalaxy.org.au/published/workflow?id=84589f66ec87ad99, https://usegalaxy.org.au/published/workflow?id=89531196e32e330e, https://usegalaxy.org.au/published/workflow?id=9176f8ebac92d10c, https://usegalaxy.org.au/published/workflow?id=98449d19a2e8022f, https://usegalaxy.org.au/published/workflow?id=9beae9b0c863d335, https://usegalaxy.org.au/published/workflow?id=a3efc48b5992374e, https://usegalaxy.org.au/published/workflow?id=b2818098da6e2f82, https://usegalaxy.org.au/published/workflow?id=b518ee5540ed01fd, https://usegalaxy.org.au/published/workflow?id=cc6de673126c56cb, https://usegalaxy.org.au/published/workflow?id=d0933b5040adf902, https://usegalaxy.org.au/published/workflow?id=d1b604a5441dc4b0, https://usegalaxy.org.au/published/workflow?id=d3989c6c2c663cd3, https://usegalaxy.org.au/published/workflow?id=d42df3bb51a94a52, https://usegalaxy.org.au/published/workflow?id=d68e167c3423c795, https://usegalaxy.org.au/published/workflow?id=d8ee4c7ef846e30f, https://usegalaxy.org.au/published/workflow?id=ec202ccfb5f03d0d, https://usegalaxy.org.au/published/workflow?id=fd1b3d7f2d34ff09, https://usegalaxy.org/published/workflow?id=07e4414905458c86, https://usegalaxy.org/published/workflow?id=11ba260b93522c22, https://usegalaxy.org/published/workflow?id=14410527253c6f40, https://usegalaxy.org/published/workflow?id=17beb47e45a7690c, https://usegalaxy.org/published/workflow?id=2566f7c6bef19b18, https://usegalaxy.org/published/workflow?id=2ae1b71ea4634d1e, https://usegalaxy.org/published/workflow?id=2b1c98865a3ce11a, https://usegalaxy.org/published/workflow?id=3fbaa9ae67362495, https://usegalaxy.org/published/workflow?id=48dd684196c65735, https://usegalaxy.org/published/workflow?id=58ce6470337a190d, https://usegalaxy.org/published/workflow?id=6e6651ae846d8f83, https://usegalaxy.org/published/workflow?id=794e7e952003d3d9, https://usegalaxy.org/published/workflow?id=846b6fa2b8e20c3c, https://usegalaxy.org/published/workflow?id=87fab09e4c592435, https://usegalaxy.org/published/workflow?id=8b2c8c8ce121177d, https://usegalaxy.org/published/workflow?id=930dfd894899173e, https://usegalaxy.org/published/workflow?id=97064f2af2f30dc4, https://usegalaxy.org/published/workflow?id=a036991efb5503ab, https://usegalaxy.org/published/workflow?id=aae5b6d9beb860ba, https://usegalaxy.org/published/workflow?id=adaa12b855e4c336, https://usegalaxy.org/published/workflow?id=b4090679dcca6ce2, https://usegalaxy.org/published/workflow?id=b4174fd0cf4f865c, https://usegalaxy.org/published/workflow?id=c64719e91e7346a2, https://usegalaxy.org/published/workflow?id=c8653e558a68eb68, https://usegalaxy.org/published/workflow?id=d69ea491b99016f4, https://usegalaxy.org/published/workflow?id=d72e33effe07de02, https://usegalaxy.org/published/workflow?id=dcf6f201b787d148, https://usegalaxy.org/published/workflow?id=df7459b7e8acb872, https://usegalaxy.org/published/workflow?id=e4e5dec116e7240b, https://usegalaxy.org/published/workflow?id=e7bfa3c733835b22, https://usegalaxy.org/published/workflow?id=fe2c0e4694c56b6b, https://workflowhub.eu/workflows/37?version=1, https://workflowhub.eu/workflows/40?version=1 |
|
|
tophat_fusion_post |
tophat_fusion_post |
Wrapper for Tophat-Fusion post step |
2014-01-27 |
|
0.1 |
blast+ |
|
To update |
Transcriptomics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/tophat_fusion_post |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/tophat_fusion_post |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
39 |
48 |
209 |
249 |
2 |
191 |
6 |
814 |
7 |
12 |
95 |
120 |
0 |
0 |
0 |
0 |
1183 |
310 |
251 |
48 |
|
|
|
trim_galore |
trim_galore |
Trim Galore adaptive quality and adapter trimmer |
2015-02-28 |
http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/ |
0.6.10 |
trim-galore |
0.6.10 |
Up-to-date |
Sequence Analysis, Fastq Manipulation |
Sequence trimming, Primer removal, Read pre-processing |
Sequence trimming, Primer removal, Read pre-processing |
Sequence analysis |
Sequence analysis |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore |
https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore |
trim_galore |
Trim Galore |
A wrapper tool around Cutadapt and FastQC to consistently apply quality and adapter trimming to FastQ files, with some extra functionality for MspI-digested RRBS-type (Reduced Representation Bisufite-Seq) libraries. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
5968 |
7091 |
267020 |
328827 |
12187 |
17960 |
260025 |
373545 |
1474 |
1684 |
31547 |
33788 |
255 |
255 |
2790 |
2790 |
738950 |
561382 |
26990 |
19884 |
https://dev.workflowhub.eu/workflows/1152?version=2, https://dev.workflowhub.eu/workflows/1153?version=2, https://dev.workflowhub.eu/workflows/1161?version=2, https://dev.workflowhub.eu/workflows/1265?version=1, https://dev.workflowhub.eu/workflows/1269?version=1, https://dev.workflowhub.eu/workflows/1281?version=1, https://dev.workflowhub.eu/workflows/1318?version=2, https://usegalaxy.eu/published/workflow?id=02631612a43a4d9b, https://usegalaxy.eu/published/workflow?id=02a212cc9f134570, https://usegalaxy.eu/published/workflow?id=1524b189069b42a5, https://usegalaxy.eu/published/workflow?id=1590085d315aa80e, https://usegalaxy.eu/published/workflow?id=1d2e17a4f71f2455, https://usegalaxy.eu/published/workflow?id=1ee43d90b69829e9, https://usegalaxy.eu/published/workflow?id=21dd4bd16579fc12, https://usegalaxy.eu/published/workflow?id=2a73d658446747de, https://usegalaxy.eu/published/workflow?id=2cf09adb1ed6c3ec, https://usegalaxy.eu/published/workflow?id=2d2d0c2231babc50, https://usegalaxy.eu/published/workflow?id=2f37c35ade97aa8d, https://usegalaxy.eu/published/workflow?id=346b46e6316c6950, https://usegalaxy.eu/published/workflow?id=385cc7df70d7916b, https://usegalaxy.eu/published/workflow?id=401746888e8b3aa8, https://usegalaxy.eu/published/workflow?id=40a621934a07c7ee, https://usegalaxy.eu/published/workflow?id=41b5f0d519404df7, https://usegalaxy.eu/published/workflow?id=443ea80b36d862f5, https://usegalaxy.eu/published/workflow?id=48fe9c4de045d414, https://usegalaxy.eu/published/workflow?id=4d80a87510b2a54e, https://usegalaxy.eu/published/workflow?id=579ff83177c5ee09, https://usegalaxy.eu/published/workflow?id=59b274da8df01ead, https://usegalaxy.eu/published/workflow?id=5ec0d6d108e02e1a, https://usegalaxy.eu/published/workflow?id=60a45de522b8b695, https://usegalaxy.eu/published/workflow?id=60f2a8721e203057, https://usegalaxy.eu/published/workflow?id=6158c3b5fc12044e, https://usegalaxy.eu/published/workflow?id=6223333100a9e73f, https://usegalaxy.eu/published/workflow?id=667bac8d7453e5f1, https://usegalaxy.eu/published/workflow?id=67e20e3082d24fbd, https://usegalaxy.eu/published/workflow?id=6a5c39c1d38a10c2, https://usegalaxy.eu/published/workflow?id=6fc2b9bea5b75a49, https://usegalaxy.eu/published/workflow?id=7136ce9f18c74853, https://usegalaxy.eu/published/workflow?id=7734928ebc0a2654, https://usegalaxy.eu/published/workflow?id=7d84b0419296857d, https://usegalaxy.eu/published/workflow?id=8601a62dbca3082f, https://usegalaxy.eu/published/workflow?id=8bc1c3b9e665ea37, https://usegalaxy.eu/published/workflow?id=8deb08d4f228e198, https://usegalaxy.eu/published/workflow?id=9382f9bbbdddb5ad, https://usegalaxy.eu/published/workflow?id=9472be79da012999, https://usegalaxy.eu/published/workflow?id=9cbba5de2cbeeb0f, https://usegalaxy.eu/published/workflow?id=a08279c2a305afff, https://usegalaxy.eu/published/workflow?id=a108b575b16e6cb9, https://usegalaxy.eu/published/workflow?id=a8417c63e9e22afb, https://usegalaxy.eu/published/workflow?id=ad4b347f9b68e127, https://usegalaxy.eu/published/workflow?id=b66e1d8171e6dac2, https://usegalaxy.eu/published/workflow?id=b6eb5fe7e37f680a, https://usegalaxy.eu/published/workflow?id=b91a380ceaa0342b, https://usegalaxy.eu/published/workflow?id=bbe2a1615c8faaae, https://usegalaxy.eu/published/workflow?id=bc79a9f797334b01, https://usegalaxy.eu/published/workflow?id=c3aa516e78ca4191, https://usegalaxy.eu/published/workflow?id=d4603d244cf8ac5b, https://usegalaxy.eu/published/workflow?id=d57d41e306241396, https://usegalaxy.eu/published/workflow?id=d72edb9f8c529f47, https://usegalaxy.eu/published/workflow?id=d9f8c5d575da02b1, https://usegalaxy.eu/published/workflow?id=eb8168bc01249596, https://usegalaxy.eu/published/workflow?id=fd90652d475ed739, https://usegalaxy.eu/published/workflow?id=fe64d430d50faf0b, https://usegalaxy.org.au/published/workflow?id=0a477899db53d098, https://usegalaxy.org.au/published/workflow?id=25f65a29ce3c3ee0, https://usegalaxy.org.au/published/workflow?id=5926a7669eabb1c6, https://usegalaxy.org.au/published/workflow?id=7a63fff9a122e60c, https://usegalaxy.org.au/published/workflow?id=7ad277dd448e57b3, https://usegalaxy.org.au/published/workflow?id=c456492ce4f963d0, https://usegalaxy.org.au/published/workflow?id=daff6854b5dfc6f1, https://usegalaxy.org/published/workflow?id=07fdeadce7a6d5cb, https://usegalaxy.org/published/workflow?id=092be3cf6e40282c, https://usegalaxy.org/published/workflow?id=0f3f91de5f022b6e, https://usegalaxy.org/published/workflow?id=0f43ad9dfd0f6d16, https://usegalaxy.org/published/workflow?id=11ba260b93522c22, https://usegalaxy.org/published/workflow?id=173ecc0c88090d0e, https://usegalaxy.org/published/workflow?id=18c6e87a884fb5ed, https://usegalaxy.org/published/workflow?id=204d0da8a023d7da, https://usegalaxy.org/published/workflow?id=2219c4aa7eb8cfb8, https://usegalaxy.org/published/workflow?id=228ae7f537a60226, https://usegalaxy.org/published/workflow?id=2f21358621337cf2, https://usegalaxy.org/published/workflow?id=41efc922cf146e0c, https://usegalaxy.org/published/workflow?id=427fce51fd9508eb, https://usegalaxy.org/published/workflow?id=43c39bc86399188f, https://usegalaxy.org/published/workflow?id=48adcc44fe62a99c, https://usegalaxy.org/published/workflow?id=5203bc68df3cf819, https://usegalaxy.org/published/workflow?id=526b05cbffecbc85, https://usegalaxy.org/published/workflow?id=53834a5fb46ca0f6, https://usegalaxy.org/published/workflow?id=5efe288b18c7d0ab, https://usegalaxy.org/published/workflow?id=5fc0c7c65edc7457, https://usegalaxy.org/published/workflow?id=623dcf47f7963700, https://usegalaxy.org/published/workflow?id=6d0a3f36d2736087, https://usegalaxy.org/published/workflow?id=6dada297572d77bd, https://usegalaxy.org/published/workflow?id=734e08331f8f34b7, https://usegalaxy.org/published/workflow?id=73ef57dfa532af3d, https://usegalaxy.org/published/workflow?id=7ee7412cdd82f1ee, https://usegalaxy.org/published/workflow?id=82681bd5f059e39a, https://usegalaxy.org/published/workflow?id=8e32b0a5a141543e, https://usegalaxy.org/published/workflow?id=93650de42fb8c015, https://usegalaxy.org/published/workflow?id=93bfbd7db42db543, https://usegalaxy.org/published/workflow?id=958f78270fc8f55c, https://usegalaxy.org/published/workflow?id=9e187245d39c7864, https://usegalaxy.org/published/workflow?id=a89def2c2462674a, https://usegalaxy.org/published/workflow?id=aac2ae0419f7d515, https://usegalaxy.org/published/workflow?id=b094b6e1e7d48416, https://usegalaxy.org/published/workflow?id=b3026f28a45626a5, https://usegalaxy.org/published/workflow?id=b3823d276917baf0, https://usegalaxy.org/published/workflow?id=bb9e69ae66c3d916, https://usegalaxy.org/published/workflow?id=c4cde7e8d897cd25, https://usegalaxy.org/published/workflow?id=d5514e327878b531, https://usegalaxy.org/published/workflow?id=ddb737f2ad0589e8, https://usegalaxy.org/published/workflow?id=dec0cf06fa059e65, https://usegalaxy.org/published/workflow?id=e04f443a8ceca0d2, https://usegalaxy.org/published/workflow?id=eb33df15225b8aa0, https://usegalaxy.org/published/workflow?id=eb4b32fcf4a9f64a, https://usegalaxy.org/published/workflow?id=ecb279a9114140ab, https://usegalaxy.org/published/workflow?id=eed1aadf2fb83f6c, https://usegalaxy.org/published/workflow?id=eedbd4e9caca6195, https://usegalaxy.org/published/workflow?id=f1a9667c0b0999f4, https://workflowhub.eu/workflows/1562?version=1, https://workflowhub.eu/workflows/1615?version=1, https://workflowhub.eu/workflows/1619?version=1, https://workflowhub.eu/workflows/1628?version=1, https://workflowhub.eu/workflows/1657?version=1, https://workflowhub.eu/workflows/1661?version=1, https://workflowhub.eu/workflows/1673?version=1, https://workflowhub.eu/workflows/1717?version=1, https://workflowhub.eu/workflows/99?version=1 |
epigenetics/cut_and_run, epigenetics/estrogen-receptor-binding-site-identification, epigenetics/formation_of_super-structures_on_xi, sequence-analysis/mapping, transcriptomics/mirna-target-finder, transcriptomics/srna, variant-analysis/baculovirus-isolate-variation |
|
trimmer |
trimmer |
Trim leading or trailing characters. |
2012-12-04 |
|
0.0.1 |
|
|
To update |
Text Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/trimmer |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/trimmer |
|
|
|
|
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
1 |
1 |
0 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
544 |
628 |
5722 |
8055 |
619 |
2986 |
14579 |
109059 |
62 |
91 |
572 |
1140 |
10 |
11 |
36 |
56 |
118310 |
20909 |
3716 |
1235 |
https://usegalaxy.eu/published/workflow?id=04a4dcac3fd922c5, https://usegalaxy.eu/published/workflow?id=250e6058f160825f, https://usegalaxy.eu/published/workflow?id=2cec6a39cd496f09, https://usegalaxy.eu/published/workflow?id=7c80cd57b2de54d4, https://usegalaxy.eu/published/workflow?id=933ab5e7fe13a8e0, https://usegalaxy.eu/published/workflow?id=c5e6047b3b256b06, https://usegalaxy.org/published/workflow?id=08edef22fa132799, https://usegalaxy.org/published/workflow?id=0a3513961f0cf9dd, https://usegalaxy.org/published/workflow?id=14f62361a15f8a24, https://usegalaxy.org/published/workflow?id=3269026bb1e0ec42, https://usegalaxy.org/published/workflow?id=3edea70fbdb9dbd9, https://usegalaxy.org/published/workflow?id=4266aa248d5b1ea4, https://usegalaxy.org/published/workflow?id=5004f1087f5e87db, https://usegalaxy.org/published/workflow?id=7ca9c5203520ca7e, https://usegalaxy.org/published/workflow?id=bb9ee8e05f7042a9, https://usegalaxy.org/published/workflow?id=e107d8036c064616, https://usegalaxy.org/published/workflow?id=e10859cc568da07c, https://usegalaxy.org/published/workflow?id=e4f1cce653812a22 |
|
|
trna_prediction |
aragorn_trna, trnascan |
Aragorn predicts tRNA and tmRNA in nucleotide sequences. |
2015-02-28 |
http://mbioserv2.mbioekol.lu.se/ARAGORN/ |
0.6 |
aragorn |
1.2.41 |
To update |
RNA |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/trna_prediction |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/trna_prediction |
|
|
|
|
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
0 |
448 |
526 |
5108 |
5535 |
0 |
0 |
0 |
0 |
111 |
111 |
2718 |
2718 |
0 |
0 |
0 |
0 |
8253 |
7826 |
637 |
559 |
https://usegalaxy.eu/published/workflow?id=33312e5643279e8a, https://usegalaxy.eu/published/workflow?id=3dcf09e75d707573, https://usegalaxy.eu/published/workflow?id=9275d0c90a8713d6, https://usegalaxy.eu/published/workflow?id=a448400f69594135, https://usegalaxy.eu/published/workflow?id=c0f225536e78a178 |
|
|
ucsc_custom_track |
build_ucsc_custom_track_1 |
Build custom track for UCSC genome browser |
2014-07-28 |
|
1.0.1 |
python |
|
To update |
Sequence Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/ucsc_custom_track |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/ucsc_custom_track |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
144 |
165 |
424 |
529 |
609 |
4139 |
2248 |
18852 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
10 |
19391 |
2672 |
4305 |
753 |
https://usegalaxy.eu/published/workflow?id=0ed8817a90caa2b1, https://usegalaxy.eu/published/workflow?id=7878623b7e959284, https://usegalaxy.org/published/workflow?id=4782a4943b6fa990 |
|
|
uniprot_rest_interface |
uniprot |
UniProt ID mapping and sequence retrieval |
2015-10-09 |
https://github.com/jdrudolph/uniprot |
0.7 |
requests |
|
To update |
Proteomics, Sequence Analysis |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/uniprot_rest_interface |
https://github.com/bgruening/galaxytools/tree/master/tools/uniprot_rest_interface |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
358 |
439 |
2162 |
2829 |
566 |
1035 |
2821 |
5928 |
56 |
56 |
902 |
902 |
0 |
0 |
0 |
0 |
9659 |
5885 |
1530 |
980 |
https://dev.workflowhub.eu/workflows/1026?version=1, https://dev.workflowhub.eu/workflows/1035?version=1, https://dev.workflowhub.eu/workflows/1143?version=2, https://dev.workflowhub.eu/workflows/1240?version=1, https://usegalaxy.eu/published/workflow?id=cde27d06b74ad2fd, https://usegalaxy.eu/published/workflow?id=d22dac11eba8c5a3, https://usegalaxy.org.au/published/workflow?id=1727d16fa4dec19c, https://workflowhub.eu/workflows/1417?version=1, https://workflowhub.eu/workflows/1426?version=1 |
proteomics/maxquant-msstats-dda-lfq, proteomics/secretome-prediction |
|
unique |
bg_uniq |
This tool returns all unique lines from a tab-separated file. |
2015-02-28 |
https://github.com/bgruening/galaxytools/tree/master/tools/file_manipulation |
0.4 |
python |
|
To update |
Text Manipulation |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/file_manipulation |
https://github.com/bgruening/galaxytools/tree/master/tools/file_manipulation |
|
|
|
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
551 |
625 |
6218 |
8855 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
49 |
49 |
392 |
392 |
9247 |
6610 |
674 |
600 |
https://dev.workflowhub.eu/workflows/1035?version=1, https://dev.workflowhub.eu/workflows/1099?version=1, https://dev.workflowhub.eu/workflows/1116?version=1, https://dev.workflowhub.eu/workflows/1143?version=2, https://usegalaxy.eu/published/workflow?id=2d2d0c2231babc50, https://usegalaxy.eu/published/workflow?id=516b4d4146e4af66, https://usegalaxy.eu/published/workflow?id=6064d1dd87b458be, https://usegalaxy.eu/published/workflow?id=6f4bbed7a320dc2f, https://usegalaxy.eu/published/workflow?id=836cc09d17eaecb0, https://usegalaxy.eu/published/workflow?id=b46b51b2860b63d5, https://usegalaxy.eu/published/workflow?id=c9423228df977254, https://usegalaxy.eu/published/workflow?id=c94a1d028357c81e, https://usegalaxy.eu/published/workflow?id=ca286c2fdc71e960, https://usegalaxy.eu/published/workflow?id=cde27d06b74ad2fd, https://usegalaxy.eu/published/workflow?id=ce5c16ac23c4fbb1, https://usegalaxy.eu/published/workflow?id=f7a7c72489d6b3d4, https://workflowhub.eu/workflows/117?version=1, https://workflowhub.eu/workflows/1417?version=1, https://workflowhub.eu/workflows/1480?version=1, https://workflowhub.eu/workflows/1631?version=1 |
assembly/metagenomics-assembly, ecology/ENA_Biodiv_submission, genome-annotation/bacterial-comparative-genomics-dataset-construction, microbiome/metagenomics-assembly, proteomics/secretome-prediction |
|
varscan_version_2 |
varscan |
VarScan wrapper |
2013-11-17 |
https://dkoboldt.github.io/varscan/ |
2.4.2 |
varscan |
2.4.6 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/varscan_version_2 |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/varscan_version_2 |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
631 |
763 |
7185 |
8578 |
2830 |
5950 |
16004 |
54780 |
420 |
484 |
2322 |
2741 |
44 |
44 |
152 |
152 |
66251 |
25663 |
7241 |
3925 |
https://usegalaxy.org/published/workflow?id=3d5347f1e8ee7db2, https://usegalaxy.org/published/workflow?id=683a0ab042fa34c9, https://usegalaxy.org/published/workflow?id=80b12b6e7ac8861f, https://usegalaxy.org/published/workflow?id=9a1b4c9747bf6ae0, https://usegalaxy.org/published/workflow?id=a37961bf3d435918, https://usegalaxy.org/published/workflow?id=a765dc267c6a5c3a, https://usegalaxy.org/published/workflow?id=a7a145c196aa55c9, https://usegalaxy.org/published/workflow?id=a7ee7de93a7fb261, https://usegalaxy.org/published/workflow?id=c4a1246974f279c5, https://usegalaxy.org/published/workflow?id=e2432c4d2b61705a, https://usegalaxy.org/published/workflow?id=ff137b61d4ef1b86 |
|
|
vcf2pgsnp |
vcf2pgSnp |
VCF to pgSnp |
2014-07-28 |
|
1.0.0 |
|
|
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/vcf2pgsnp |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/vcf2pgsnp |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
56 |
66 |
189 |
231 |
191 |
602 |
1331 |
2735 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2966 |
1520 |
668 |
247 |
|
|
|
vcf_annotate |
vcf_annotate |
Annotate a VCF file (dbSNP, hapmap) |
2014-01-27 |
|
1.0.0 |
|
|
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/vcf_annotate |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/vcf_annotate |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
1 |
0 |
1 |
28 |
54 |
220 |
340 |
0 |
0 |
0 |
0 |
342 |
220 |
56 |
28 |
|
|
|
vcf_extract |
vcf_extract |
Extract reads from a specified region |
2014-01-27 |
|
1.0.0 |
|
|
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/vcf_extract |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/vcf_extract |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
9 |
433 |
569 |
0 |
0 |
0 |
0 |
569 |
433 |
9 |
5 |
|
|
|
vcf_filter |
vcf_filter |
Filter a VCF file |
2014-01-27 |
|
1.0.0 |
|
|
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/vcf_filter |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/vcf_filter |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
156 |
167 |
465 |
540 |
0 |
0 |
0 |
0 |
17 |
56 |
205 |
606 |
0 |
0 |
0 |
0 |
1146 |
670 |
223 |
173 |
|
|
|
vcf_intersect |
vcf_intersect |
Generate the intersection of two VCF files |
2014-01-27 |
|
1.0.0 |
|
|
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/vcf_intersect |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/vcf_intersect |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
19 |
0 |
0 |
0 |
0 |
18 |
28 |
287 |
463 |
0 |
0 |
0 |
0 |
482 |
287 |
31 |
18 |
|
|
|
vcftools_annotate |
vcftools_annotate |
Annotate VCF using custom/user-defined annotations |
2013-11-24 |
https://vcftools.github.io/ |
0.1 |
echo |
|
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcftools/vcftools_annotate |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/vcftools/vcftools_annotate |
|
|
|
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
96 |
107 |
167 |
214 |
627 |
1368 |
1992 |
4211 |
12 |
16 |
128 |
156 |
2 |
2 |
2 |
2 |
4583 |
2289 |
1493 |
737 |
https://usegalaxy.org/published/workflow?id=a7a145c196aa55c9, https://usegalaxy.org/published/workflow?id=e7586d70715207b5, https://usegalaxy.org/published/workflow?id=ff137b61d4ef1b86 |
|
|
vcftools_compare |
vcftools_compare |
Compare VCF files to get overlap and uniqueness statistics |
2013-11-24 |
https://vcftools.github.io/ |
0.1 |
tabix |
1.11 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcftools/vcftools_compare |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/vcftools/vcftools_compare |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
132 |
157 |
465 |
637 |
0 |
0 |
0 |
0 |
0 |
12 |
0 |
16 |
0 |
0 |
0 |
0 |
653 |
465 |
169 |
132 |
|
|
|
vcftools_consensus |
vcftools_consensus |
Apply VCF variants to a fasta file to create consensus sequence |
2016-10-16 |
https://vcftools.github.io/ |
0.1.11 |
samtools |
1.22.1 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcftools/vcftools_consensus |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/vcftools/vcftools_consensus |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
vcftools_isec |
vcftools_isec |
Intersect multiple VCF datasets |
2013-11-24 |
https://vcftools.github.io/ |
0.1.1 |
tabix |
1.11 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcftools/vcftools_isec |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/vcftools/vcftools_isec |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
109 |
130 |
406 |
572 |
0 |
1 |
0 |
1 |
29 |
49 |
40 |
498 |
0 |
0 |
0 |
0 |
1071 |
446 |
180 |
138 |
https://usegalaxy.org.au/published/workflow?id=3d5deed70ac9bde4 |
|
|
vcftools_merge |
vcftools_merge |
Merge multiple VCF datasets into a single dataset |
2013-11-24 |
https://vcftools.github.io/ |
0.1.11 |
tabix |
1.11 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcftools/vcftools_merge |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/vcftools/vcftools_merge |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
259 |
295 |
984 |
1283 |
0 |
0 |
0 |
0 |
45 |
63 |
93 |
455 |
0 |
0 |
0 |
0 |
1738 |
1077 |
358 |
304 |
https://usegalaxy.eu/published/workflow?id=c00fe92f9a579a15 |
|
|
vcftools_slice |
vcftools_slice |
Subset VCF dataset by genomic regions |
2013-11-24 |
https://vcftools.github.io/ |
0.1 |
echo |
|
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcftools/vcftools_slice |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/vcftools/vcftools_slice |
|
|
|
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
58 |
65 |
418 |
443 |
136 |
369 |
5343 |
8143 |
10 |
19 |
108 |
157 |
1 |
1 |
5 |
5 |
8748 |
5874 |
454 |
205 |
|
|
|
vcftools_subset |
vcftools_subset |
Select samples from a VCF dataset |
2013-11-24 |
https://vcftools.github.io/ |
0.1 |
tabix |
1.11 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcftools/vcftools_subset |
https://github.com/galaxyproject/tools-devteam/tree/main/tool_collections/vcftools/vcftools_subset |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
45 |
50 |
125 |
144 |
0 |
0 |
0 |
0 |
11 |
19 |
104 |
142 |
0 |
0 |
0 |
0 |
286 |
229 |
69 |
56 |
|
|
|
venn_list |
venn_list |
Draw Venn Diagram (PDF) from lists, FASTA files, etc |
2013-09-26 |
https://github.com/peterjc/pico_galaxy/tree/master/tools/venn_list |
0.1.2 |
galaxy_sequence_utils |
1.2.0 |
To update |
Graphics, Sequence Analysis, Visualization |
|
|
|
|
peterjc |
https://github.com/peterjc/pico_galaxy/tree/master/tools/venn_list |
https://github.com/peterjc/pico_galaxy/tree/master/tools/venn_list |
|
|
|
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
700 |
831 |
4824 |
6098 |
968 |
2080 |
9871 |
18774 |
0 |
0 |
0 |
0 |
24 |
24 |
94 |
94 |
24966 |
14789 |
2935 |
1692 |
https://usegalaxy.eu/published/workflow?id=9e0d784860d6cc91, https://usegalaxy.eu/published/workflow?id=ca286c2fdc71e960 |
|
|
viennarna |
viennarna_kinfold, viennarna_kinwalker, viennarna_rna2dfold, viennarna_rnaaliduplex, viennarna_rnaalifold, viennarna_rnacofold, viennarna_rnadistance, viennarna_rnaduplex, viennarna_rnaeval, viennarna_rnafold, viennarna_rnaheat, viennarna_rnainverse, viennarna_rnalalifold, viennarna_rnalfold, viennarna_rnapaln, viennarna_rnadpdist, viennarna_rnapkplex, viennarna_rnaplex, viennarna_rnaplfold, viennarna_rnaplot, viennarna_rnasnoop, viennarna_rnasubopt, viennarna_rnaup |
ViennaRNA - Prediction and comparison of RNA secondary structures |
2015-02-28 |
http://www.tbi.univie.ac.at/RNA/ |
2.2.10 |
viennarna |
2.7.0 |
To update |
RNA |
|
|
|
|
rnateam |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna |
https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna |
|
|
|
|
0 |
0 |
21 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
21 |
21 |
0 |
138 |
180 |
2895 |
8297 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8297 |
2895 |
180 |
138 |
https://usegalaxy.eu/published/workflow?id=58fd339165ded462, https://usegalaxy.eu/published/workflow?id=5cd167ed9e159e73, https://usegalaxy.eu/published/workflow?id=9b1b135109072e71, https://usegalaxy.eu/published/workflow?id=bc4155d947ea0808, https://usegalaxy.eu/published/workflow?id=e51f857dd851e7d7 |
|
|
vpt |
vpt_extract, vpt_segment |
Vizgen Post-processing Tool |
2025-04-29 |
https://vizgen.github.io/vizgen-postprocessing/ |
1.3.0 |
|
|
To update |
Single Cell, Spatial Omics, Transcriptomics, Imaging |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/vpt |
https://github.com/bgruening/galaxytools/tree/master/tools/vpt |
|
|
|
|
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
vrhyme |
vrhyme |
Tool for dereplication and binning virus genomes from metagenomes. |
2025-05-14 |
https://github.com/AnantharamanLab/vRhyme |
1.1.0 |
vrhyme |
1.1.0 |
Up-to-date |
Metagenomics |
Scaffolding, Read binning, Read mapping, Sequence trimming |
Scaffolding, Read binning, Read mapping, Sequence trimming |
Metagenomics, Microbial ecology, Model organisms, Machine learning, Sequence assembly |
Metagenomics, Microbial ecology, Model organisms, Machine learning, Sequence assembly |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/vrhyme |
https://github.com/bgruening/galaxytools/tree/master/tools/vrhyme |
vRhyme |
vRhyme |
vRhyme enables binning of viral genomes from metagenomes. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
vt |
vt_@BINARY@, vt_@BINARY@ |
A tool set for short variant discovery in genetic sequence data. |
2015-02-28 |
|
0.2 |
vt |
2015.11.10 |
To update |
Sequence Analysis, Variant Analysis |
|
|
|
|
bgruening |
https://github.com/atks/vt |
https://github.com/bgruening/galaxytools/tree/master/tools/vt |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
weightedaverage |
wtavg |
Assign weighted-average of the values of features overlapping an interval |
2014-04-01 |
|
1.0.1 |
galaxy-ops |
1.1.0 |
To update |
Sequence Analysis, Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/weightedaverage |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/weightedaverage |
|
|
|
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
17 |
76 |
188 |
2308 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2308 |
188 |
76 |
17 |
|
|
|
whisper |
whisper |
Transcribe audio or video files to text using the OpenAI Whisper. |
2024-04-23 |
https://github.com/bgruening/galaxytools/tree/master/tools/whisper |
20231117 |
|
|
To update |
Machine Learning |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/whisper |
https://github.com/bgruening/galaxytools/tree/master/tools/whisper |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
18 |
18 |
234 |
234 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
234 |
234 |
18 |
18 |
https://usegalaxy.eu/published/workflow?id=a2284469005518e1 |
|
|
whisperx |
whisperx |
Transcribe audio or video files to text using the OpenAI Whisper and speaker diarization using pyannote audio |
2025-07-01 |
https://github.com/bgruening/galaxytools/tree/master/tools/whisperx |
3.4.2 |
|
|
To update |
Machine Learning |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/whisperx |
https://github.com/bgruening/galaxytools/tree/master/tools/whisperx |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
windowsplitter |
winSplitter |
Make windows |
2014-04-01 |
|
1.0.1 |
bx-python |
0.14.0 |
To update |
Sequence Analysis, Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/windowsplitter |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/windowsplitter |
|
|
|
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
11 |
36 |
330 |
154 |
3963 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3974 |
154 |
332 |
36 |
|
|
|
wordcloud |
wordcloud |
A little word cloud generator in Python. |
2024-12-13 |
https://github.com/amueller/word_cloud |
1.9.4 |
wordcloud |
|
To update |
Visualization |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/wordcloud |
https://github.com/bgruening/galaxytools/tree/master/tools/wordcloud |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
12 |
12 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
12 |
2 |
2 |
https://usegalaxy.eu/published/workflow?id=c917db7d7ba7ea6f, https://workflowhub.eu/workflows/1623?version=1 |
digital-humanities/text_mining_chinese |
|
wtdbg |
wtdbg |
WTDBG is a fuzzy Bruijn graph (FBG) approach to long noisy reads assembly. |
2018-06-12 |
https://github.com/ruanjue/wtdbg2 |
2.5 |
wtdbg |
2.5 |
Up-to-date |
Assembly |
Genome assembly, De-novo assembly |
Genome assembly, De-novo assembly |
Sequence assembly, Sequencing |
Sequence assembly, Sequencing |
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/wtdbg |
https://github.com/bgruening/galaxytools/tree/master/tools/wtdbg |
wtdbg2 |
wtdbg2 |
Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output. Wtdbg2 is able to assemble the human and even the 32Gb Axolotl genome at a speed tens of times faster than CANU and FALCON while producing contigs of comparable base accuracy. |
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
369 |
416 |
1372 |
1826 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
26 |
26 |
142 |
142 |
1968 |
1514 |
442 |
395 |
|
|
|
xy_plot |
XY_Plot_1 |
Plotting tool for multiple series and graph types |
2013-09-25 |
|
1.0.2 |
r-base |
|
To update |
Graphics, Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-devteam/tree/master/tools/xy_plot |
https://github.com/galaxyproject/tools-devteam/tree/main/tools/xy_plot |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
771 |
928 |
4441 |
6254 |
2030 |
3933 |
6341 |
16255 |
564 |
612 |
2053 |
2341 |
99 |
99 |
340 |
340 |
25190 |
13175 |
5572 |
3464 |
https://dev.workflowhub.eu/workflows/1101?version=1, https://dev.workflowhub.eu/workflows/1129?version=1, https://usegalaxy.eu/published/workflow?id=17ad465d9515cd25, https://usegalaxy.eu/published/workflow?id=25850714d13f0b0f, https://usegalaxy.eu/published/workflow?id=c1e26abe61c69688, https://usegalaxy.eu/published/workflow?id=c67d2e75eeb4fd19, https://usegalaxy.eu/published/workflow?id=ce21961260fe4351, https://usegalaxy.eu/published/workflow?id=dadca1020f586338, https://usegalaxy.eu/published/workflow?id=f21d6a40a10a8ae8, https://usegalaxy.org.au/published/workflow?id=2717e90438c7fb8c, https://usegalaxy.org.au/published/workflow?id=5877e2d5eba79f36, https://usegalaxy.org.au/published/workflow?id=aa1d123c0a0929f3, https://usegalaxy.org/published/workflow?id=67080f040e855990, https://usegalaxy.org/published/workflow?id=6f090b2c259847d2, https://usegalaxy.org/published/workflow?id=746f4eef47648b26, https://usegalaxy.org/published/workflow?id=775335812a6b7a61, https://usegalaxy.org/published/workflow?id=9cc814d43379c2a6, https://usegalaxy.org/published/workflow?id=bc01b8b203ecc754, https://usegalaxy.org/published/workflow?id=c50f10ecd1ac2ff9, https://usegalaxy.org/published/workflow?id=d653eaefcf6b4697, https://usegalaxy.org/published/workflow?id=e3c1736cca484dda, https://workflowhub.eu/workflows/1412?version=1, https://workflowhub.eu/workflows/1465?version=1, https://workflowhub.eu/workflows/652?version=1 |
microbiome/mothur-miseq-sop, microbiome/mothur-miseq-sop-short |
|
yolo |
json2yolosegment, yolo_predict, yolo_training |
tools for building yolo workflows. |
2025-06-12 |
https://github.com/bgruening/galaxytools |
8.3.0 |
|
|
To update |
Imaging |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools |
https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/yolo |
|
|
|
|
0 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
AMRFinderPlus |
amrfinderplus |
"AMRFinderPlus is designed to find acquired antimicrobial resistance genes and point mutations in protein and/or assembled nucleotide sequences.It can also search "plus", stress, heat, and biocide resistance and virulence factors for some organisms. |
2023-05-12 |
https://github.com/ncbi/amr |
3.12.8 |
ncbi-amrfinderplus |
4.0.23 |
To update |
Sequence Analysis |
Antimicrobial resistance prediction |
Antimicrobial resistance prediction |
Microbiology, Public health and epidemiology, Infectious disease |
Microbiology, Public health and epidemiology, Infectious disease |
iuc |
https://github.com/galaxyproject/tools-iuc/blob/master/tools/amrfinderplus |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/amrfinderplus |
amrfinderplus |
AMRFinderPlus |
AMRFinderPlus is designed to find acquired antimicrobial resistance genes and point mutations in protein and/or assembled nucleotide sequences.It can also search "plus", stress, heat, and biocide resistance and virulence factors for some organisms |
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
533 |
533 |
10706 |
10706 |
316 |
316 |
7698 |
7698 |
0 |
0 |
0 |
0 |
16 |
16 |
774 |
774 |
19178 |
19178 |
865 |
865 |
https://usegalaxy.eu/published/workflow?id=1ce523ef51f47134, https://usegalaxy.eu/published/workflow?id=309fc4fc2e0da89c, https://usegalaxy.eu/published/workflow?id=34df701aa23a9fb3, https://usegalaxy.eu/published/workflow?id=41d207d06a32ba05, https://usegalaxy.eu/published/workflow?id=a448400f69594135, https://usegalaxy.eu/published/workflow?id=abe85758e77c78e6, https://usegalaxy.eu/published/workflow?id=b203dec6ee6da2fd, https://usegalaxy.eu/published/workflow?id=cc59ae1a9878942c, https://usegalaxy.eu/published/workflow?id=e37cc0b64774561b, https://usegalaxy.eu/published/workflow?id=eb5ab8bc82569eee, https://usegalaxy.eu/published/workflow?id=f30f8e7dcd50cd0d, https://usegalaxy.eu/published/workflow?id=fde21b5f5c169114, https://usegalaxy.org/published/workflow?id=2078a54de1f2628d, https://usegalaxy.org/published/workflow?id=2b4b1fe82258f303, https://usegalaxy.org/published/workflow?id=3c177fdf38311118, https://usegalaxy.org/published/workflow?id=aaf8e740b3f8e2c0, https://usegalaxy.org/published/workflow?id=ef187f85b103d858, https://usegalaxy.org/published/workflow?id=fde774a049875466, https://workflowhub.eu/workflows/1049?version=7 |
|
|
Beacon2_Import |
beacon2_analyses, beacon2_biosamples, beacon2_bracket, beacon2_cnv, beacon2_cohorts, beacon2_datasets, beacon2_gene, beacon2_import, beacon2_individuals, beacon2_range, beacon2_runs, beacon2_sequence |
Beacon Import uploads local genetic data to the server, while Beacon Query searches for genetic information such as genes, sequences, and variants. |
2024-07-22 |
https://pypi.org/project/beacon2-import/ |
2.2.4 |
beacon2-import |
2.2.4 |
Up-to-date |
Variant Analysis |
Service discovery, Database search, Genetic variation analysis |
Service discovery, Database search, Genetic variation analysis |
Genetic variation, Population genetics, Data security, Rare diseases |
Genetic variation, Population genetics, Data security, Rare diseases |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/beacon2-import |
ga4gh_beacon |
GA4GH Beacon |
A global search engine for genetic mutations. |
|
0 |
12 |
12 |
12 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
5 |
51 |
51 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
51 |
51 |
5 |
5 |
|
variant-analysis/beacon_cnv_query, variant-analysis/beaconise_1000hg |
|
ISEScan |
isescan |
"ISEScan is a pipeline to identify IS (Insertion Sequence) elements in genome and metagenomebased on profile hidden Markov models constructed from manually curated IS elements." |
2022-09-01 |
https://github.com/xiezhq/ISEScan |
1.7.3 |
isescan |
1.7.3 |
Up-to-date |
Sequence Analysis |
Structural variation detection |
Structural variation detection |
Genomics, DNA structural variation, Sequence analysis, Genetic variation |
Genomics, Sequence analysis, Genetic variation |
iuc |
https://github.com/galaxyproject/tools-iuc/blob/master/tools/isescan |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/isescan |
ISEScan |
ISEScan |
Automated identification of insertion sequence elements in prokaryotic genomes. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
274 |
274 |
63211 |
63211 |
106 |
106 |
435 |
435 |
90 |
90 |
5189 |
5189 |
29 |
29 |
909 |
909 |
69744 |
69744 |
499 |
499 |
https://dev.workflowhub.eu/workflows/1136?version=2, https://usegalaxy.eu/published/workflow?id=2c1a6da84d891cf2, https://usegalaxy.eu/published/workflow?id=3081569659a45b9e, https://usegalaxy.eu/published/workflow?id=36ea584e0f60893e, https://usegalaxy.eu/published/workflow?id=3f5fe28793ed0c6c, https://usegalaxy.eu/published/workflow?id=4a218fb93d78ba67, https://usegalaxy.eu/published/workflow?id=61948fcaefa1418a, https://usegalaxy.eu/published/workflow?id=6b69ab27c565257b, https://usegalaxy.eu/published/workflow?id=8792eaecb69fbc26, https://usegalaxy.eu/published/workflow?id=a18aed4b03ffd27e, https://usegalaxy.eu/published/workflow?id=b1afc8d1e81fc904, https://usegalaxy.eu/published/workflow?id=bcd50e655809cfcb, https://usegalaxy.eu/published/workflow?id=d8db0b2e30370b84, https://usegalaxy.eu/published/workflow?id=dfb8e0f3c534000e, https://usegalaxy.fr/published/workflow?id=7964ddc68853458f, https://usegalaxy.org/published/workflow?id=04c5ea133de3204c, https://usegalaxy.org/published/workflow?id=3940186d02245b1d, https://usegalaxy.org/published/workflow?id=4f8bdd61c524b901, https://usegalaxy.org/published/workflow?id=649cdc14757e5755, https://usegalaxy.org/published/workflow?id=8cb8a588a0495cfa, https://usegalaxy.org/published/workflow?id=993534c11310a207, https://usegalaxy.org/published/workflow?id=d2a5f6a5181aada5, https://workflowhub.eu/workflows/1050?version=11, https://workflowhub.eu/workflows/1513?version=1 |
genome-annotation/bacterial-genome-annotation |
|
abricate |
abricate, abricate_list, abricate_summary |
Mass screening of contigs for antiobiotic resistance genes |
2016-07-29 |
https://github.com/tseemann/abricate |
1.0.1 |
abricate |
1.0.1 |
Up-to-date |
Sequence Analysis |
Antimicrobial resistance prediction |
Antimicrobial resistance prediction |
Genomics, Microbiology |
Genomics, Microbiology |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/abricate |
ABRicate |
ABRicate |
Mass screening of contigs for antimicrobial resistance or virulence genes. |
|
3 |
3 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
3 |
0 |
3760 |
3823 |
656194 |
672009 |
2665 |
2665 |
345048 |
345052 |
1655 |
1908 |
521371 |
537399 |
46 |
46 |
11594 |
11594 |
1566054 |
1534207 |
8442 |
8126 |
https://dev.workflowhub.eu/workflows/1091?version=1, https://usegalaxy.eu/published/workflow?id=1ce523ef51f47134, https://usegalaxy.eu/published/workflow?id=2b888e200dfd91bc, https://usegalaxy.eu/published/workflow?id=2e0075791f7fa384, https://usegalaxy.eu/published/workflow?id=3081569659a45b9e, https://usegalaxy.eu/published/workflow?id=309fc4fc2e0da89c, https://usegalaxy.eu/published/workflow?id=34df701aa23a9fb3, https://usegalaxy.eu/published/workflow?id=37da7b42cb063a3a, https://usegalaxy.eu/published/workflow?id=3f5fe28793ed0c6c, https://usegalaxy.eu/published/workflow?id=41d207d06a32ba05, https://usegalaxy.eu/published/workflow?id=42c0da2e86318b37, https://usegalaxy.eu/published/workflow?id=49c46d7653d6c349, https://usegalaxy.eu/published/workflow?id=4f245ac304ab76d9, https://usegalaxy.eu/published/workflow?id=5826e573b6f93762, https://usegalaxy.eu/published/workflow?id=585c21b7b1d864fc, https://usegalaxy.eu/published/workflow?id=628062a8cf93261f, https://usegalaxy.eu/published/workflow?id=6984990d0ac2e1e6, https://usegalaxy.eu/published/workflow?id=6a5c39c1d38a10c2, https://usegalaxy.eu/published/workflow?id=6d87481be47902e1, https://usegalaxy.eu/published/workflow?id=77e5bbd317750915, https://usegalaxy.eu/published/workflow?id=94c3d329c31c712f, https://usegalaxy.eu/published/workflow?id=a337bfb2eb1e583f, https://usegalaxy.eu/published/workflow?id=a84bac86ec183d46, https://usegalaxy.eu/published/workflow?id=abe85758e77c78e6, https://usegalaxy.eu/published/workflow?id=b203dec6ee6da2fd, https://usegalaxy.eu/published/workflow?id=bf48b0eb15e8ff75, https://usegalaxy.eu/published/workflow?id=c9ef2d2ce92e2dfb, https://usegalaxy.eu/published/workflow?id=e37cc0b64774561b, https://usegalaxy.eu/published/workflow?id=eb5ab8bc82569eee, https://usegalaxy.eu/published/workflow?id=f30f8e7dcd50cd0d, https://usegalaxy.eu/published/workflow?id=fde21b5f5c169114, https://usegalaxy.org.au/published/workflow?id=084bb76cf47d7060, https://usegalaxy.org.au/published/workflow?id=35f39173f0ac9179, https://usegalaxy.org.au/published/workflow?id=59618ed15510f531, https://usegalaxy.org.au/published/workflow?id=7a0c4804e4d4c905, https://usegalaxy.org.au/published/workflow?id=914330feb75ea9ab, https://usegalaxy.org.au/published/workflow?id=c997a34b55425155, https://usegalaxy.org.au/published/workflow?id=c9b7de574fb2f2d5, https://usegalaxy.org.au/published/workflow?id=d78f885b4b86635f, https://usegalaxy.org.au/published/workflow?id=e20172eb0f30d6cd, https://usegalaxy.org.au/published/workflow?id=ef8c22c2525063a2, https://usegalaxy.org/published/workflow?id=2078a54de1f2628d, https://usegalaxy.org/published/workflow?id=2b4b1fe82258f303, https://usegalaxy.org/published/workflow?id=3c177fdf38311118, https://usegalaxy.org/published/workflow?id=3f252e077e0bcce5, https://usegalaxy.org/published/workflow?id=8111bb9bb26bb665, https://usegalaxy.org/published/workflow?id=aaf8e740b3f8e2c0, https://usegalaxy.org/published/workflow?id=c65bec6c332bf740, https://usegalaxy.org/published/workflow?id=cce88bc57b180d09, https://usegalaxy.org/published/workflow?id=e12324f5e3b930fd, https://usegalaxy.org/published/workflow?id=ef187f85b103d858, https://usegalaxy.org/published/workflow?id=fb01e1a49793c8be, https://usegalaxy.org/published/workflow?id=fde774a049875466, https://workflowhub.eu/workflows/1049?version=7, https://workflowhub.eu/workflows/1062?version=1, https://workflowhub.eu/workflows/1189?version=2, https://workflowhub.eu/workflows/1495?version=1, https://workflowhub.eu/workflows/470?version=1 |
microbiome/pathogen-detection-from-nanopore-foodborne-data |
|
abritamr |
abritamr |
A pipeline for running AMRfinderPlus and collating results into functional classes |
2023-04-03 |
https://zenodo.org/record/7370628 |
1.0.19 |
abritamr |
1.0.19 |
Up-to-date |
Sequence Analysis |
Antimicrobial resistance prediction |
Antimicrobial resistance prediction |
Microbiology, Public health and epidemiology, Infectious disease, Antimicrobial resistance |
Microbiology, Public health and epidemiology, Infectious disease |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/abritamr |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/abritamr |
abritamr |
abriTAMR |
an AMR gene detection pipeline that runs AMRFinderPlus on a single (or list ) of given isolates and collates the results into a table, separating genes identified into functionally relevant groups. |
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
194 |
194 |
1663 |
1663 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1663 |
1663 |
194 |
194 |
https://usegalaxy.eu/published/workflow?id=eb5ab8bc82569eee, https://workflowhub.eu/workflows/634?version=1 |
|
|
abyss |
abyss-pe |
Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler |
2015-04-14 |
http://www.bcgsc.ca/platform/bioinfo/software/abyss |
2.3.10 |
abyss |
2.3.10 |
Up-to-date |
Assembly |
Genome assembly, De-novo assembly, Scaffolding |
Genome assembly, De-novo assembly, Scaffolding |
Sequence assembly |
Sequence assembly |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/abyss |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/abyss |
abyss |
ABySS |
De novo genome sequence assembler using short reads. |
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1090 |
1131 |
5811 |
6064 |
409 |
414 |
1286 |
1305 |
350 |
350 |
2224 |
2224 |
6 |
6 |
8 |
8 |
9601 |
9329 |
1901 |
1855 |
|
|
|
adapter_removal |
adapter_removal |
Removes residual adapter sequences from single-end (SE) or paired-end (PE) FASTQ reads. |
2022-05-04 |
https://github.com/MikkelSchubert/adapterremoval |
2.3.4 |
adapterremoval |
2.3.4 |
Up-to-date |
Fasta Manipulation, Sequence Analysis |
Sequence trimming, Sequence merging, Primer removal |
Sequence trimming, Sequence merging, Primer removal |
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/adapter_removal/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/adapter_removal |
adapterremoval |
AdapterRemoval |
AdapterRemoval searches for and removes adapter sequences from High-Throughput Sequencing (HTS) data and (optionally) trims low quality bases from the 3' end of reads following adapter removal. AdapterRemoval can analyze both single end and paired end data, and can be used to merge overlapping paired-ended reads into (longer) consensus sequences. Additionally, AdapterRemoval can construct a consensus adapter sequence for paired-ended reads, if which this information is not available. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
71 |
71 |
517 |
517 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
517 |
517 |
71 |
71 |
|
|
|
add_input_name_as_column |
addName |
Add input name as column on an existing tabular file |
2020-03-24 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/add_input_name_as_column |
0.2.0 |
python |
|
To update |
Text Manipulation |
|
|
|
|
mvdbeek |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/add_input_name_as_column |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/add_input_name_as_column |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
230 |
261 |
83660 |
93449 |
309 |
423 |
26182 |
27654 |
7 |
7 |
167 |
167 |
0 |
0 |
0 |
0 |
121270 |
110009 |
691 |
546 |
https://dev.workflowhub.eu/workflows/1010?version=1, https://dev.workflowhub.eu/workflows/1314?version=2, https://usegalaxy.eu/published/workflow?id=03e8b0d3dcedc092, https://usegalaxy.eu/published/workflow?id=098f43ded1b5fa7f, https://usegalaxy.eu/published/workflow?id=16418e8b023ff226, https://usegalaxy.eu/published/workflow?id=1f3f6757de60d3cf, https://usegalaxy.eu/published/workflow?id=2ebf65efe8ca4a7f, https://usegalaxy.eu/published/workflow?id=31c6dcd3a25620df, https://usegalaxy.eu/published/workflow?id=389d992ff7268247, https://usegalaxy.eu/published/workflow?id=64bb7a64877034dc, https://usegalaxy.eu/published/workflow?id=89ed570bc0703472, https://usegalaxy.eu/published/workflow?id=8d00a8b70b0c019c, https://usegalaxy.eu/published/workflow?id=9aa290ce1927d700, https://usegalaxy.eu/published/workflow?id=9c5a0596956064a6, https://usegalaxy.eu/published/workflow?id=9e497c5c9e64d9b3, https://usegalaxy.eu/published/workflow?id=cc385bd4376a907c, https://usegalaxy.eu/published/workflow?id=d0d6dae0d1eecc21, https://usegalaxy.eu/published/workflow?id=f4a55ef0d4c2cd97, https://usegalaxy.org.au/published/workflow?id=2df1d32f78974528, https://usegalaxy.org.au/published/workflow?id=2fee25e188531691, https://usegalaxy.org.au/published/workflow?id=446ba22c3d2f3367, https://usegalaxy.org.au/published/workflow?id=499245b3a113e06d, https://usegalaxy.org.au/published/workflow?id=518d27f68e05a356, https://usegalaxy.org.au/published/workflow?id=66e530368fd40abd, https://usegalaxy.org.au/published/workflow?id=9016b2be61f89053, https://usegalaxy.org.au/published/workflow?id=92fcdd490831c6c5, https://usegalaxy.org.au/published/workflow?id=cf775b8ff0745456, https://usegalaxy.org.au/published/workflow?id=e6552643a3713b50, https://usegalaxy.org/published/workflow?id=1e264fc06d87899f, https://usegalaxy.org/published/workflow?id=44bcae0e352563f9, https://usegalaxy.org/published/workflow?id=450c2181f89e6b23, https://usegalaxy.org/published/workflow?id=768cee70d9aa8cc6, https://usegalaxy.org/published/workflow?id=b1b4fc510099d592, https://usegalaxy.org/published/workflow?id=bf79271a438ffa54, https://usegalaxy.org/published/workflow?id=e50e36a25bae863c, https://usegalaxy.org/published/workflow?id=f18e6fa5270fcd37, https://workflowhub.eu/workflows/1057?version=8, https://workflowhub.eu/workflows/1564?version=1 |
evolution/mtb_transmission |
|
aegean |
aegean_canongff3, aegean_gaeval, aegean_locuspocus, aegean_parseval |
AEGeAn toolkit wrappers |
2021-01-03 |
https://github.com/BrendelGroup/AEGeAn |
0.16.0 |
aegean |
0.16.0 |
Up-to-date |
Transcriptomics, Sequence Analysis |
Sequence annotation |
Sequence annotation |
Sequence analysis, Gene structure |
Sequence analysis, Gene structure |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/aegean |
gaeval |
GAEVAL |
Gene Annotation EVAluation. |
|
1 |
4 |
4 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
4 |
0 |
0 |
61 |
61 |
256 |
256 |
47 |
47 |
103 |
103 |
30 |
30 |
2211 |
2211 |
22 |
22 |
49 |
49 |
2619 |
2619 |
160 |
160 |
https://dev.workflowhub.eu/workflows/1202?version=1, https://usegalaxy.cz/published/workflow?id=932f4901960a595a, https://usegalaxy.org.au/published/workflow?id=4e161a8f5098cc49, https://workflowhub.eu/workflows/1525?version=1, https://workflowhub.eu/workflows/754?version=1 |
genome-annotation/funannotate |
|
aldex2 |
aldex2 |
Performs analysis Of differential abundance taking sample variation into account |
2022-06-29 |
https://github.com/ggloor/ALDEx_bioc |
1.26.0 |
bioconductor-aldex2 |
1.38.0 |
To update |
Metagenomics |
Statistical inference |
Statistical inference |
Gene expression, Statistics and probability |
Gene expression, Statistics and probability |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/aldex2 |
aldex2 |
ALDEx2 |
A differential abundance analysis for the comparison of two or more conditions. It uses a Dirichlet-multinomial model to infer abundance from counts, that has been optimized for three or more experimental replicates. Infers sampling variation and calculates the expected FDR given the biological and sampling variation using the Wilcox rank test and Welches t-test, or the glm and Kruskal Wallis tests. Reports both P and fdr values calculated by the Benjamini Hochberg correction. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
47 |
47 |
299 |
299 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
299 |
299 |
47 |
47 |
|
|
|
allegro |
allegro |
Linkage and haplotype analysis from deCODE |
2017-11-19 |
http://www.decode.com/software/ |
2 |
allegro |
3 |
To update |
Variant Analysis |
Sequence motif discovery |
Sequence motif discovery |
Sequence analysis, Transcription factors and regulatory sites, DNA |
Sequence analysis, Transcription factors and regulatory sites, DNA |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/allegro/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/allegro |
allegro |
Allegro |
It does simultaneous discovery of cis-regulatory motifs and their associated expression profiles. Its input are DNA sequences (typically, promoters or 3′ UTRs) and genome-wide expression profiles. Its output is the set of motifs found, and for each motif the set of genes it regulates (its transcriptional module). It is highly efficient and can analyze expression profiles of thousands of genes, measured across dozens of experimental conditions, along with all regulatory sequences in the genome. |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
amplican |
amplican |
AmpliCan is an analysis tool for genome editing. |
2021-09-22 |
https://github.com/valenlab/amplican |
1.14.0 |
bioconductor-amplican |
1.28.0 |
To update |
Sequence Analysis |
Alignment, Standardisation and normalisation |
Alignment, Standardisation and normalisation |
PCR experiment, Statistics and probability |
PCR experiment, Statistics and probability |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/amplican |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/amplican |
amplican |
amplican |
It performs alignment of the amplicon reads, normalizes gathered data, calculates multiple statistics (e.g. cut rates, frameshifts) and presents results in form of aggregated reports. Data and statistics can be broken down by experiments, barcodes, user defined groups, guides and amplicons allowing for quick identification of potential problems. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
18 |
18 |
84 |
84 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
84 |
84 |
18 |
18 |
|
|
|
ampligone |
ampligone |
AmpliGone is a tool which accurately finds and removes primer sequences from NGS reads in an amplicon experiment. |
2025-07-29 |
https://rivm-bioinformatics.github.io/AmpliGone/latest/ |
2.0.1 |
AmpliGone |
2.0.1 |
Up-to-date |
Sequence Analysis, Fastq Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ampligone |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ampligone |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
ampvis2 |
ampvis2_alpha_diversity, ampvis2_boxplot, ampvis2_core, ampvis2_export_fasta, ampvis2_export_otu, ampvis2_frequency, ampvis2_heatmap, ampvis2_load, ampvis2_merge_ampvis2, ampvis2_mergereplicates, ampvis2_octave, ampvis2_ordinate, ampvis2_otu_network, ampvis2_rankabundance, ampvis2_rarecurve, ampvis2_setmetadata, ampvis2_subset_samples, ampvis2_subset_taxa, ampvis2_timeseries, ampvis2_venn |
ampvis2 |
2022-04-04 |
https://github.com/MadsAlbertsen/ampvis2/ |
2.8.9 |
|
|
To update |
Metagenomics |
Analysis, Visualisation |
Analysis, Visualisation |
Biodiversity |
Biodiversity |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ampvis2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ampvis2 |
ampvis |
ampvis |
ampvis2 is an R-package to conveniently visualise and analyse 16S rRNA amplicon data in different ways. |
|
1 |
0 |
20 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
19 |
0 |
0 |
50 |
50 |
2708 |
2708 |
4 |
4 |
4 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2712 |
2712 |
54 |
54 |
https://usegalaxy.eu/published/workflow?id=466bdd8ba7b67264, https://usegalaxy.eu/published/workflow?id=b4ed2a3690da0196, https://usegalaxy.eu/published/workflow?id=e91def3fc9738ebb, https://usegalaxy.org/published/workflow?id=82973143b28bb767, https://usegalaxy.org/published/workflow?id=b76c55dafd44b305, https://workflowhub.eu/workflows/1275?version=2 |
|
|
ancombc |
ancombc |
Performs analysis of compositions of microbiomes with bias correction. |
2022-07-16 |
https://github.com/FrederickHuangLin/ANCOMBC |
1.4.0 |
bioconductor-ancombc |
2.8.0 |
To update |
Metagenomics |
DNA barcoding |
DNA barcoding |
Microbial ecology, Metagenomics, Taxonomy |
Microbial ecology, Metagenomics, Taxonomy |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ancombc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ancombc |
ancombc |
ANCOMBC |
Determine taxa whose absolute abundances, per unit volume, of the ecosystem (e.g. gut) are significantly different with changes in the covariate of interest (e.g. group). The current version of ancombc function implements Analysis of Compositions of Microbiomes with Bias Correction (ANCOM-BC) in cross-sectional data while allowing for covariate adjustment. |
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
9 |
9 |
37 |
37 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
37 |
37 |
9 |
9 |
|
|
|
anndata |
anndata_export, anndata_import, anndata_inspect, anndata_manipulate, modify_loom |
Import, Export, Inspect and Manipulate Anndata and Loom objects |
2019-03-21 |
https://anndata.readthedocs.io |
0.10.9 |
anndata |
0.6.22.post1 |
To update |
Single Cell, Spatial Omics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/anndata/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/anndata |
anndata |
anndata |
From https://anndata.readthedocs.io/en/latest/"Python package for handling annotated data matrices in memory and on disk, positioned between pandas and xarray." |
|
5 |
5 |
5 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
5 |
5 |
0 |
789 |
799 |
46937 |
47633 |
342 |
342 |
19201 |
19201 |
125 |
125 |
10481 |
10481 |
0 |
0 |
0 |
0 |
77315 |
76619 |
1266 |
1256 |
https://dev.workflowhub.eu/workflows/1012?version=1, https://dev.workflowhub.eu/workflows/1013?version=1, https://dev.workflowhub.eu/workflows/1014?version=1, https://dev.workflowhub.eu/workflows/1015?version=1, https://dev.workflowhub.eu/workflows/1016?version=1, https://dev.workflowhub.eu/workflows/1017?version=1, https://dev.workflowhub.eu/workflows/1018?version=1, https://dev.workflowhub.eu/workflows/1019?version=1, https://dev.workflowhub.eu/workflows/1020?version=1, https://dev.workflowhub.eu/workflows/1021?version=1, https://dev.workflowhub.eu/workflows/1023?version=1, https://dev.workflowhub.eu/workflows/1208?version=1, https://dev.workflowhub.eu/workflows/1212?version=1, https://dev.workflowhub.eu/workflows/1219?version=2, https://dev.workflowhub.eu/workflows/1225?version=1, https://dev.workflowhub.eu/workflows/1228?version=1, https://dev.workflowhub.eu/workflows/1233?version=1, https://dev.workflowhub.eu/workflows/1238?version=1, https://dev.workflowhub.eu/workflows/1246?version=2, https://dev.workflowhub.eu/workflows/1247?version=2, https://dev.workflowhub.eu/workflows/1251?version=2, https://dev.workflowhub.eu/workflows/1255?version=2, https://dev.workflowhub.eu/workflows/1259?version=3, https://dev.workflowhub.eu/workflows/1261?version=1, https://dev.workflowhub.eu/workflows/1266?version=1, https://dev.workflowhub.eu/workflows/1272?version=2, https://dev.workflowhub.eu/workflows/1343?version=2, https://dev.workflowhub.eu/workflows/1377?version=1, https://dev.workflowhub.eu/workflows/1378?version=1, https://usegalaxy.eu/published/workflow?id=030e978022e19375, https://usegalaxy.eu/published/workflow?id=0e6e181234b48121, https://usegalaxy.eu/published/workflow?id=171d6fca2c3339e2, https://usegalaxy.eu/published/workflow?id=21315ffd2df2f159, https://usegalaxy.eu/published/workflow?id=35c092316cdc27d1, https://usegalaxy.eu/published/workflow?id=37e51e215684bdcc, https://usegalaxy.eu/published/workflow?id=3fe3b9a57762841e, https://usegalaxy.eu/published/workflow?id=409ac72c9906f16a, https://usegalaxy.eu/published/workflow?id=4756053b2596b6cf, https://usegalaxy.eu/published/workflow?id=49a6ddcba35bf085, https://usegalaxy.eu/published/workflow?id=5b8e4ae3447934d9, https://usegalaxy.eu/published/workflow?id=704e6c9bc51db49f, https://usegalaxy.eu/published/workflow?id=715ca378c1d68de3, https://usegalaxy.eu/published/workflow?id=73aa794916b91bb2, https://usegalaxy.eu/published/workflow?id=767f8c990316b66a, https://usegalaxy.eu/published/workflow?id=77e85bde57477194, https://usegalaxy.eu/published/workflow?id=78dc6fca5b58ec05, https://usegalaxy.eu/published/workflow?id=7d22eea4278570e8, https://usegalaxy.eu/published/workflow?id=921cab3e6faf30be, https://usegalaxy.eu/published/workflow?id=9a657909d6191203, https://usegalaxy.eu/published/workflow?id=9a9bbd8046da7b19, https://usegalaxy.eu/published/workflow?id=9d15b328d8408715, https://usegalaxy.eu/published/workflow?id=b5627201bb4f6943, https://usegalaxy.eu/published/workflow?id=d1a1e6070c0a36ca, https://usegalaxy.eu/published/workflow?id=d20fbb95f15386f5, https://usegalaxy.eu/published/workflow?id=d70dc4cfeedb690b, https://usegalaxy.eu/published/workflow?id=ddced7b107e4707a, https://usegalaxy.eu/published/workflow?id=decd6ad0b41289ef, https://usegalaxy.eu/published/workflow?id=e2391c40d24d403f, https://usegalaxy.eu/published/workflow?id=e472096116cbe392, https://usegalaxy.eu/published/workflow?id=e4e969e9943cdaa5, https://usegalaxy.eu/published/workflow?id=f05754467a439134, https://usegalaxy.eu/published/workflow?id=f689faf267fbe504, https://usegalaxy.org.au/published/workflow?id=102eb726f63f3190, https://usegalaxy.org.au/published/workflow?id=218ffb4438833bdd, https://usegalaxy.org.au/published/workflow?id=471615c412b305f2, https://usegalaxy.org.au/published/workflow?id=57321b64220d5835, https://usegalaxy.org.au/published/workflow?id=8055596d732590d6, https://usegalaxy.org.au/published/workflow?id=94241afd07e8a8b7, https://usegalaxy.org/published/workflow?id=dd43ae9a5b303086, https://usegalaxy.org/published/workflow?id=ea3257e0ef9f505a, https://usegalaxy.org/published/workflow?id=f35ccb693cd874c1, https://workflowhub.eu/workflows/1077?version=1, https://workflowhub.eu/workflows/1078?version=1, https://workflowhub.eu/workflows/1256?version=1, https://workflowhub.eu/workflows/1356?version=1, https://workflowhub.eu/workflows/1362?version=1, https://workflowhub.eu/workflows/1485?version=1, https://workflowhub.eu/workflows/1490?version=1, https://workflowhub.eu/workflows/1496?version=1, https://workflowhub.eu/workflows/1501?version=1, https://workflowhub.eu/workflows/1506?version=1, https://workflowhub.eu/workflows/1519?version=1, https://workflowhub.eu/workflows/1520?version=1, https://workflowhub.eu/workflows/1523?version=1, https://workflowhub.eu/workflows/1524?version=1, https://workflowhub.eu/workflows/1527?version=1, https://workflowhub.eu/workflows/1529?version=1, https://workflowhub.eu/workflows/1531?version=1, https://workflowhub.eu/workflows/1537?version=1, https://workflowhub.eu/workflows/1539?version=1, https://workflowhub.eu/workflows/1543?version=1, https://workflowhub.eu/workflows/1548?version=1, https://workflowhub.eu/workflows/1550?version=1, https://workflowhub.eu/workflows/1551?version=1, https://workflowhub.eu/workflows/1556?version=1, https://workflowhub.eu/workflows/1561?version=1, https://workflowhub.eu/workflows/1565?version=1, https://workflowhub.eu/workflows/1574?version=1, https://workflowhub.eu/workflows/1745?version=2, https://workflowhub.eu/workflows/468?version=3, https://workflowhub.eu/workflows/512?version=2, https://workflowhub.eu/workflows/513?version=3, https://workflowhub.eu/workflows/646?version=2 |
single-cell/bulk-music-2-preparescref, single-cell/pseudobulk-analysis, single-cell/scatac-batch-correction-snapatac2, single-cell/scatac-preprocessing-tenx, single-cell/scatac-standard-processing-snapatac2, single-cell/scrna-case_alevin, single-cell/scrna-case_alevin-combine-datasets, single-cell/scrna-case_basic-pipeline, single-cell/scrna-case_cell-cycle, single-cell/scrna-case_monocle3-trajectories, single-cell/scrna-case_trajectories, single-cell/scrna-data-ingest, single-cell/scrna-ncbi-anndata, single-cell/scrna-plant, single-cell/scrna-scanpy-pbmc3k |
|
anndata2ri |
anndata2ri |
Convert between Anndata and SingCellExperiment objects |
2025-02-12 |
https://github.com/theislab/anndata2ri |
1.3.2 |
anndata2ri |
2.0 |
To update |
Single Cell, Convert Formats |
Data handling |
Data handling |
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/anndata2ri/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/anndata2ri |
anndata2ri |
anndata2ri |
RPy2 converter from AnnData to SingleCellExperiment and back. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
annotatemyids |
annotatemyids |
annotateMyIDs: get annotation for a set of IDs using the Bioconductor annotation packages |
2017-11-17 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotatemyids |
3.18.0 |
bioconductor-org.hs.eg.db |
3.20.0 |
To update |
Genome annotation |
Annotation |
Annotation |
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotatemyids |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/annotatemyids |
annotatemyids |
annotatemyids |
This tool can get annotation for a generic set of IDs, using the Bioconductor annotation data packages. Supported organisms are human, mouse, rat, fruit fly and zebrafish. The org.db packages that are used here are primarily based on mapping using Entrez Gene identifiers. More information on the annotation packages can be found at the Bioconductor website, for example, information on the human annotation package (org.Hs.eg.db) can be found here. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
3232 |
3439 |
31518 |
34272 |
6524 |
7241 |
60687 |
72517 |
1138 |
1160 |
6237 |
6380 |
22 |
22 |
148 |
148 |
113317 |
98590 |
11862 |
10916 |
https://dev.workflowhub.eu/workflows/1230?version=1, https://dev.workflowhub.eu/workflows/1261?version=1, https://dev.workflowhub.eu/workflows/1321?version=1, https://dev.workflowhub.eu/workflows/1332?version=1, https://usegalaxy.eu/published/workflow?id=030e978022e19375, https://usegalaxy.eu/published/workflow?id=0f7acf235096b708, https://usegalaxy.eu/published/workflow?id=227d97974573aaf2, https://usegalaxy.eu/published/workflow?id=2ae4a83327615155, https://usegalaxy.eu/published/workflow?id=2f7c04ad219a9d2d, https://usegalaxy.eu/published/workflow?id=3386856a60b35897, https://usegalaxy.eu/published/workflow?id=36eefcc25ab1fe15, https://usegalaxy.eu/published/workflow?id=6d47a24218d08930, https://usegalaxy.eu/published/workflow?id=a6290cdfa12d34ad, https://usegalaxy.eu/published/workflow?id=ca286c2fdc71e960, https://usegalaxy.eu/published/workflow?id=d9f8c5d575da02b1, https://usegalaxy.eu/published/workflow?id=f98f0e0c18222cc0, https://usegalaxy.eu/published/workflow?id=f9ddc4dd9140b293, https://usegalaxy.eu/published/workflow?id=fe6c64676be56ee9, https://usegalaxy.org.au/published/workflow?id=bdb498b1f0e8944f, https://usegalaxy.org/published/workflow?id=5944c5effd56b0d6, https://usegalaxy.org/published/workflow?id=93bfbd7db42db543, https://workflowhub.eu/workflows/1542?version=1, https://workflowhub.eu/workflows/1548?version=1, https://workflowhub.eu/workflows/1684?version=1, https://workflowhub.eu/workflows/1703?version=1, https://workflowhub.eu/workflows/689?version=1 |
single-cell/bulk-deconvolution-evaluate, single-cell/bulk-music-2-preparescref, single-cell/bulk-music-3-preparebulk, transcriptomics/minerva-pathways, transcriptomics/rna-seq-counts-to-genes |
|
argnorm |
argnorm |
argNorm is a tool to normalize antibiotic resistance genes (ARGs) by mapping them to the antibiotic resistance ontology (ARO) created by the CARD database |
2024-08-28 |
https://github.com/BigDataBiology/argNorm |
1.0.0 |
argnorm |
1.1.0 |
To update |
Genome annotation |
Gene functional annotation |
Gene functional annotation |
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm |
argnorm |
argNorm |
argNorm is a tool to normalize antibiotic resistance genes (ARGs) by mapping them to the antibiotic resistance ontology (ARO) created by the CARD database.argNorm also enhances antibiotic resistance gene annotations by providing drug categorization of the drugs that antibiotic resistance genes confer resistance to. |
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
21 |
21 |
49 |
49 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
27 |
27 |
76 |
76 |
22 |
22 |
|
|
|
arriba |
arriba, arriba_draw_fusions, arriba_get_filters |
Arriba detects fusion genes in RNA-Seq data after running RNA-STAR |
2022-07-27 |
https://github.com/suhrig/arriba |
2.5.1 |
arriba |
2.5.1 |
Up-to-date |
Sequence Analysis, Transcriptomics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/arriba |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/arriba |
|
|
|
|
3 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
60 |
60 |
3866 |
3866 |
7 |
7 |
112 |
112 |
9 |
9 |
338 |
338 |
0 |
0 |
0 |
0 |
4316 |
4316 |
76 |
76 |
https://dev.workflowhub.eu/workflows/1383?version=1, https://usegalaxy.eu/published/workflow?id=d0a809f0880d7ec0, https://usegalaxy.org.au/published/workflow?id=0dff588f31f1dfd6, https://usegalaxy.org.au/published/workflow?id=65250d6b30d4bc7c, https://usegalaxy.org.au/published/workflow?id=d5a3fd1faa3f0a41, https://usegalaxy.org/published/workflow?id=39810594e5c332d5, https://usegalaxy.org/published/workflow?id=b28789b6a0e1f5c9, https://workflowhub.eu/workflows/1442?version=1, https://workflowhub.eu/workflows/1792?version=1 |
proteomics/neoantigen-fusion-database-generation |
|
art |
art_454, art_illumina, art_solid |
Simulator for Illumina, 454, and SOLiD sequencing data |
2015-02-11 |
http://www.niehs.nih.gov/research/resources/software/biostatistics/art/ |
2014.11.03.0 |
art |
2016.06.05 |
To update |
Sequence Analysis, Data Source |
Conversion |
Conversion |
Bioinformatics |
Bioinformatics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/art |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/art |
art |
ART |
ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process with empirical error models or quality profiles summarized from large recalibrated sequencing data. ART can also simulate reads using user own read error model or quality profiles. ART supports simulation of single-end, paired-end/mate-pair reads of three major commercial next-generation sequencing platforms. Illuminas Solexa, Roches 454 and Applied Biosystems SOLiD |
|
0 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
19 |
19 |
259 |
259 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
259 |
259 |
19 |
19 |
|
|
|
artic |
artic_guppyplex, artic_minion |
The artic pipeline is designed to help run the artic bioinformatics protocols;for example the nCoV-2019 novel coronavirus protocol.Features include: read filtering, primer trimming, amplicon coverage normalisation,variant calling and consensus building |
2020-04-17 |
https://github.com/artic-network/fieldbioinformatics |
1.7.3 |
artic |
1.8.0 |
To update |
Sequence Analysis |
Sequence alignment |
Sequence alignment |
Genomics |
Genomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/artic |
artic |
ARTIC |
A bioinformatics pipeline for working with virus sequencing data sequenced with nanopore |
|
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
2 |
1 |
0 |
182 |
182 |
11912 |
11912 |
0 |
0 |
0 |
0 |
8 |
8 |
531 |
531 |
0 |
0 |
0 |
0 |
12443 |
12443 |
190 |
190 |
https://usegalaxy.org.au/published/workflow?id=aa1d123c0a0929f3, https://workflowhub.eu/workflows/521?version=1 |
|
|
assembly_stats |
assembly_stats |
Assembly metric visualisations to facilitate rapid assessment and comparison of assembly quality. |
2023-06-21 |
https://github.com/rjchallis/assembly-stats |
17.02 |
rjchallis-assembly-stats |
17.02 |
Up-to-date |
Assembly |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/assembly-stats |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/assembly-stats |
|
|
|
|
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
14 |
14 |
26 |
26 |
26 |
26 |
14 |
14 |
|
|
|
astral |
astral |
Tool for estimating an unrooted species tree given a set of unrooted gene trees |
2024-08-28 |
https://github.com/smirarab/ASTRAL |
5.7.8 |
astral-tree |
5.7.8 |
Up-to-date |
Phylogenetics |
|
|
|
|
iuc |
https://github.com/usegalaxy-be/galaxytools/tree/main/astral |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/astral |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
5 |
151 |
151 |
0 |
0 |
0 |
0 |
151 |
151 |
5 |
5 |
https://workflowhub.eu/workflows/359?version=1 |
|
|
augustus |
augustus, augustus_training |
AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences. |
2017-10-05 |
http://bioinf.uni-greifswald.de/augustus/ |
3.5.0 |
augustus |
3.5.0 |
Up-to-date |
Sequence Analysis |
Gene prediction, Ab-initio gene prediction, Homology-based gene prediction, Homology-based gene prediction, Operation |
Ab-initio gene prediction, Homology-based gene prediction, Homology-based gene prediction, Operation |
Gene transcripts, Gene and protein families |
Gene transcripts, Gene and protein families |
bgruening |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/augustus |
augustus |
AUGUSTUS |
AUGUSTUS is a eukaryotic gene prediction tool. It can integrate evidence, e.g. from RNA-Seq, ESTs, proteomics, but can also predict genes ab initio. The PPX extension to AUGUSTUS can take a protein sequence multiple sequence alignment as input to find new members of the family in a genome. It can be run through a web interface (see https://bio.tools/webaugustus), or downloaded and run locally. |
|
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
1632 |
1823 |
14780 |
16318 |
2532 |
2532 |
17131 |
17131 |
416 |
416 |
7735 |
7735 |
42 |
42 |
4656 |
4656 |
45840 |
44302 |
4813 |
4622 |
https://dev.workflowhub.eu/workflows/1164?version=2, https://usegalaxy.eu/published/workflow?id=26ad77bc07a7e512, https://usegalaxy.eu/published/workflow?id=33312e5643279e8a, https://usegalaxy.eu/published/workflow?id=6ca20e710f4f3ffb, https://usegalaxy.org.au/published/workflow?id=7e40485d1ed45b7c, https://usegalaxy.org/published/workflow?id=ec3cc032a90c44f1, https://workflowhub.eu/workflows/1504?version=1 |
genome-annotation/annotation-with-maker |
|
autobigs |
autobigs-cli |
Automated MLST typing from PubMLST and InstitutPasteur. |
2025-02-24 |
https://github.com/Syph-and-VPD-Lab/autoBIGS.cli |
0.6.2 |
autobigs-cli |
0.6.5 |
To update |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/Syph-and-VPD-Lab/autoBIGS.cli |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/autobigs |
AutoBIGS.CLI |
AutoBIGS.CLI |
A command-line interface (CLI) based program that allows quickly batched requests for obtaining MLST profiles on multiple FASTA sequences and exporting it as a convenient CSV. Capable of querying a variety of MLST databases from both Institut Pasteur and PubMLST. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
b2btools |
b2btools_single_sequence |
This software suite provides structural predictions for protein sequences made by Bio2Byte group.About Bio2Byte: We investigate how the dynamics, conformational states, and available experimental data of proteins relate to their amino acid sequence.Underlying physical and chemical principles are computationally unraveled through data integration, analysis, and machine learning, so connecting themto biological events and improving our understanding of the way proteins work. |
2022-08-09 |
https://bio2byte.be |
3.0.5+galaxy0 |
b2btools |
3.0.7 |
To update |
Computational chemistry, Molecular Dynamics, Proteomics, Sequence Analysis, Synthetic Biology |
Protein disorder prediction, Protein secondary structure prediction, Protein feature detection |
Protein disorder prediction, Protein secondary structure prediction |
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/b2tools |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/b2btools |
b2btools |
b2bTools |
The bio2byte tools server (b2btools) offers the following single protein sequence based predictions:- Backbone and sidechain dynamics (DynaMine)- Helix, sheet, coil and polyproline-II propensity- Early folding propensity (EFoldMine)- Disorder (DisoMine)- Beta-sheet aggregation (Agmata)In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'biophysical limits' of a protein family as defined in the MSA |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
20 |
20 |
372 |
372 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
372 |
372 |
20 |
20 |
|
|
|
bakta |
bakta |
"Bakta is a tool for the rapid & standardized annotation of bacterial genomes and plasmids from both isolates and MAGs.It provides dbxref-rich and sORF-including annotations in machine-readable JSON & bioinformatics standard file formats for automatic downstream analysis." |
2022-09-01 |
https://github.com/oschwengers/bakta |
1.9.4 |
bakta |
1.11.3 |
To update |
Sequence Analysis |
Genome annotation |
Genome annotation |
Genomics, Sequence analysis, Bioinformatics |
Genomics, Sequence analysis, Bioinformatics |
iuc |
https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bakta |
bakta |
Bakta |
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
901 |
901 |
16861 |
16861 |
333 |
333 |
2041 |
2041 |
238 |
238 |
18219 |
18219 |
56 |
56 |
1931 |
1931 |
39052 |
39052 |
1528 |
1528 |
https://dev.workflowhub.eu/workflows/1136?version=2, https://dev.workflowhub.eu/workflows/1168?version=2, https://usegalaxy.eu/published/workflow?id=2c1a6da84d891cf2, https://usegalaxy.eu/published/workflow?id=309fc4fc2e0da89c, https://usegalaxy.eu/published/workflow?id=36ea584e0f60893e, https://usegalaxy.eu/published/workflow?id=3f5fe28793ed0c6c, https://usegalaxy.eu/published/workflow?id=3f6c7249ef71ae41, https://usegalaxy.eu/published/workflow?id=4a218fb93d78ba67, https://usegalaxy.eu/published/workflow?id=61948fcaefa1418a, https://usegalaxy.eu/published/workflow?id=6b69ab27c565257b, https://usegalaxy.eu/published/workflow?id=7ecd92cb382d8168, https://usegalaxy.eu/published/workflow?id=8792eaecb69fbc26, https://usegalaxy.eu/published/workflow?id=968f0ac2617aa524, https://usegalaxy.eu/published/workflow?id=a18aed4b03ffd27e, https://usegalaxy.eu/published/workflow?id=b1afc8d1e81fc904, https://usegalaxy.eu/published/workflow?id=bcd50e655809cfcb, https://usegalaxy.eu/published/workflow?id=cc59ae1a9878942c, https://usegalaxy.eu/published/workflow?id=d8db0b2e30370b84, https://usegalaxy.eu/published/workflow?id=dfb8e0f3c534000e, https://usegalaxy.eu/published/workflow?id=fde21b5f5c169114, https://usegalaxy.fr/published/workflow?id=7964ddc68853458f, https://usegalaxy.org.au/published/workflow?id=b6bad1f167257248, https://usegalaxy.org/published/workflow?id=04c5ea133de3204c, https://usegalaxy.org/published/workflow?id=3940186d02245b1d, https://usegalaxy.org/published/workflow?id=4f8bdd61c524b901, https://usegalaxy.org/published/workflow?id=547f86db467bf620, https://usegalaxy.org/published/workflow?id=649cdc14757e5755, https://usegalaxy.org/published/workflow?id=8cb8a588a0495cfa, https://usegalaxy.org/published/workflow?id=993534c11310a207, https://usegalaxy.org/published/workflow?id=d2a5f6a5181aada5, https://workflowhub.eu/workflows/1050?version=11, https://workflowhub.eu/workflows/1352?version=3, https://workflowhub.eu/workflows/1488?version=1, https://workflowhub.eu/workflows/1513?version=1 |
genome-annotation/amr-gene-detection, genome-annotation/bacterial-genome-annotation |
|
bam2fastx |
bam2fastx |
Convert PacBio Bam File to fasta or fastq file |
2024-03-11 |
https://github.com/PacificBiosciences/pbtk |
3.5.0 |
pbtk |
3.5.0 |
Up-to-date |
Convert Formats, Fasta Manipulation, Fastq Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/pbtk |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pbtk |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
34 |
34 |
126 |
126 |
38 |
38 |
277 |
277 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
403 |
403 |
72 |
72 |
|
|
|
bam_to_scidx |
bam_to_scidx |
Contains a tool that converts a BAM file to an ScIdx file. |
2015-12-07 |
https://github.com/seqcode/cegr-tools/tree/master/src/org/seqcode/cegrtools/bamtoscidx |
1.0.1 |
openjdk |
|
To update |
Convert Formats |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/bam_to_scidx |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bam_to_scidx |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
13 |
20 |
57 |
131 |
42 |
210 |
286 |
788 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
919 |
343 |
230 |
55 |
|
|
|
bamtools |
bamtools_split_mapped, bamtools_split_paired, bamtools_split_ref, bamtools_split_tag |
Utility for filtering BAM files. It is based on the BAMtools suiteof tools by Derek Barnett. |
2017-06-09 |
https://github.com/pezmaster31/bamtools |
2.5.2 |
bamtools |
2.5.3 |
To update |
Sequence Analysis, SAM |
Data handling, Sequence alignment analysis |
Data handling, Sequence alignment analysis |
Sequencing, Data management, Sequence analysis |
Sequencing, Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/bamtools/bamtools_split |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/bamtools/bamtools_split |
bamtools |
BamTools |
BamTools provides a fast, flexible C++ API & toolkit for reading, writing, and managing BAM files. |
|
4 |
3 |
4 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
251 |
251 |
20731 |
20731 |
192 |
192 |
4702 |
4702 |
11 |
11 |
227 |
227 |
0 |
0 |
0 |
0 |
25660 |
25660 |
454 |
454 |
https://dev.workflowhub.eu/workflows/1087?version=2, https://usegalaxy.eu/published/workflow?id=344cd3a3c2ce5302, https://usegalaxy.eu/published/workflow?id=98bfad0c684011e9, https://usegalaxy.eu/published/workflow?id=a15dabcadb63b46d, https://usegalaxy.eu/published/workflow?id=a705370bc2c13d5c, https://usegalaxy.eu/published/workflow?id=c789ab71876c6ead, https://usegalaxy.eu/published/workflow?id=cd25f70f71683ab6, https://usegalaxy.org.au/published/workflow?id=25d52afddaa3451b, https://usegalaxy.org.au/published/workflow?id=69d91340fc7effa2, https://usegalaxy.org/published/workflow?id=1518c8c50747a1c1, https://usegalaxy.org/published/workflow?id=574e42683dc3961b, https://usegalaxy.org/published/workflow?id=97263f3308077ff0, https://usegalaxy.org/published/workflow?id=a8b9252fad5fe06a, https://usegalaxy.org/published/workflow?id=e12324f5e3b930fd, https://workflowhub.eu/workflows/1061?version=1, https://workflowhub.eu/workflows/1260?version=2, https://workflowhub.eu/workflows/1492?version=2 |
microbiome/pathogen-detection-from-nanopore-foodborne-data, variant-analysis/aiv-analysis |
|
bamtools |
bamtools |
Operate on and transform BAM datasets in various ways using bamtools |
2017-06-09 |
https://github.com/pezmaster31/bamtools |
2.5.2 |
bamtools |
2.5.3 |
To update |
Sequence Analysis, SAM |
Data handling, Sequence alignment analysis |
Data handling, Sequence alignment analysis |
Sequencing, Data management, Sequence analysis |
Sequencing, Sequence analysis |
devteam |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/bamtools/bamtools |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/bamtools/bamtools |
bamtools |
BamTools |
BamTools provides a fast, flexible C++ API & toolkit for reading, writing, and managing BAM files. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
624 |
734 |
14256 |
15720 |
1477 |
5710 |
60638 |
101980 |
4 |
4 |
120 |
120 |
13 |
13 |
54 |
54 |
117874 |
75068 |
6461 |
2118 |
https://dev.workflowhub.eu/workflows/1099?version=1, https://dev.workflowhub.eu/workflows/1116?version=1, https://usegalaxy.eu/published/workflow?id=36a4646959829018, https://usegalaxy.eu/published/workflow?id=99022559adf01c4a, https://usegalaxy.eu/published/workflow?id=ce5c16ac23c4fbb1, https://workflowhub.eu/workflows/1480?version=1, https://workflowhub.eu/workflows/1631?version=1 |
assembly/metagenomics-assembly, microbiome/metagenomics-assembly |
|
bamtools_filter |
bamFilter |
Filter BAM datasets on various attributes using bamtools filter |
2017-06-09 |
https://github.com/pezmaster31/bamtools |
2.5.2 |
bamtools |
2.5.3 |
To update |
Sequence Analysis, SAM |
Data handling, Sequence alignment analysis |
Data handling, Sequence alignment analysis |
Sequencing, Data management, Sequence analysis |
Sequencing, Sequence analysis |
devteam |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/bamtools/bamtools_filter |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/bamtools/bamtools_filter |
bamtools |
BamTools |
BamTools provides a fast, flexible C++ API & toolkit for reading, writing, and managing BAM files. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
3327 |
3618 |
121087 |
131737 |
6716 |
11234 |
98496 |
150535 |
555 |
555 |
6901 |
6901 |
470 |
471 |
2129 |
2192 |
291365 |
228613 |
15878 |
11068 |
https://dev.workflowhub.eu/workflows/1081?version=1, https://dev.workflowhub.eu/workflows/1100?version=2, https://dev.workflowhub.eu/workflows/1161?version=2, https://dev.workflowhub.eu/workflows/1169?version=2, https://dev.workflowhub.eu/workflows/1214?version=1, https://dev.workflowhub.eu/workflows/1265?version=1, https://dev.workflowhub.eu/workflows/574?version=1, https://usegalaxy.eu/published/workflow?id=02655d0e4af0ee0d, https://usegalaxy.eu/published/workflow?id=1089e5c66dbcc1a3, https://usegalaxy.eu/published/workflow?id=111527fe542846af, https://usegalaxy.eu/published/workflow?id=1ee43d90b69829e9, https://usegalaxy.eu/published/workflow?id=25aa944237d7fb82, https://usegalaxy.eu/published/workflow?id=291c36e1b18e9deb, https://usegalaxy.eu/published/workflow?id=2cd5670f075704ab, https://usegalaxy.eu/published/workflow?id=2f51a82838722bec, https://usegalaxy.eu/published/workflow?id=30e7dc81e323cbdb, https://usegalaxy.eu/published/workflow?id=3b8ef7905c902b27, https://usegalaxy.eu/published/workflow?id=40a621934a07c7ee, https://usegalaxy.eu/published/workflow?id=45f63151bf4f1a49, https://usegalaxy.eu/published/workflow?id=48f63ef14a12f306, https://usegalaxy.eu/published/workflow?id=49073a24429d93d6, https://usegalaxy.eu/published/workflow?id=4daa0c33d6d50379, https://usegalaxy.eu/published/workflow?id=4f62794453f65cba, https://usegalaxy.eu/published/workflow?id=54b91dd86f463391, https://usegalaxy.eu/published/workflow?id=5a16af00bf8bf57b, https://usegalaxy.eu/published/workflow?id=6ebd09100fc98878, https://usegalaxy.eu/published/workflow?id=7e0ba4c14803448e, https://usegalaxy.eu/published/workflow?id=8132c3b710fd6d48, https://usegalaxy.eu/published/workflow?id=83049910e2cd5128, https://usegalaxy.eu/published/workflow?id=86e2e2faa2e0bd46, https://usegalaxy.eu/published/workflow?id=88064e2231165fd2, https://usegalaxy.eu/published/workflow?id=93a7047396080fda, https://usegalaxy.eu/published/workflow?id=94b9287365ea4d0d, https://usegalaxy.eu/published/workflow?id=a08279c2a305afff, https://usegalaxy.eu/published/workflow?id=a3da32b6b45da639, https://usegalaxy.eu/published/workflow?id=ad4b347f9b68e127, https://usegalaxy.eu/published/workflow?id=af7c349497a75314, https://usegalaxy.eu/published/workflow?id=c3eba26c5d7febff, https://usegalaxy.eu/published/workflow?id=c64b219b4031fabd, https://usegalaxy.eu/published/workflow?id=c98a14fcf5998159, https://usegalaxy.eu/published/workflow?id=c9aff55e39e195e3, https://usegalaxy.eu/published/workflow?id=d12617d0df5f81d0, https://usegalaxy.eu/published/workflow?id=d3494c6124f820b2, https://usegalaxy.eu/published/workflow?id=d3edc3f0659a5e5b, https://usegalaxy.eu/published/workflow?id=d649ec485c4b3994, https://usegalaxy.eu/published/workflow?id=d83280cd72ec0f33, https://usegalaxy.eu/published/workflow?id=e522be58f0bac656, https://usegalaxy.eu/published/workflow?id=ef1d11b79a2e1727, https://usegalaxy.eu/published/workflow?id=f14ebad1c3c20067, https://usegalaxy.eu/published/workflow?id=f841e1207611f28f, https://usegalaxy.eu/published/workflow?id=fa53b172def3fe75, https://usegalaxy.fr/published/workflow?id=334189184455d9a2, https://usegalaxy.fr/published/workflow?id=74b4d11c07f7f0a4, https://usegalaxy.org.au/published/workflow?id=0a477899db53d098, https://usegalaxy.org.au/published/workflow?id=0f48060aa1bd41a5, https://usegalaxy.org.au/published/workflow?id=2362ff8880213586, https://usegalaxy.org.au/published/workflow?id=32d28f800adcea42, https://usegalaxy.org.au/published/workflow?id=3e6f755ee62f7301, https://usegalaxy.org.au/published/workflow?id=3e7fcfd23872ad0d, https://usegalaxy.org.au/published/workflow?id=466809eb3392f7fb, https://usegalaxy.org.au/published/workflow?id=46f352c70356184a, https://usegalaxy.org.au/published/workflow?id=52056336f24eccf6, https://usegalaxy.org.au/published/workflow?id=5cd9b9338e75f254, https://usegalaxy.org.au/published/workflow?id=6b3df543536faf8c, https://usegalaxy.org.au/published/workflow?id=79f4bdf9aab7c256, https://usegalaxy.org.au/published/workflow?id=7ae06a27188b9438, https://usegalaxy.org.au/published/workflow?id=99821674db7682bb, https://usegalaxy.org/published/workflow?id=00bc4e99626da1ba, https://usegalaxy.org/published/workflow?id=06d6dcd2655592af, https://usegalaxy.org/published/workflow?id=0a57740c68e85e21, https://usegalaxy.org/published/workflow?id=0a89328e6d28dd07, https://usegalaxy.org/published/workflow?id=0d8eb75d28fa7df2, https://usegalaxy.org/published/workflow?id=0ebb1f5b6c9c8ab9, https://usegalaxy.org/published/workflow?id=1250ec3ad6199cda, https://usegalaxy.org/published/workflow?id=13a1fa4f6daf65cc, https://usegalaxy.org/published/workflow?id=156e245e3d9f22ce, https://usegalaxy.org/published/workflow?id=15ea806eaf077617, https://usegalaxy.org/published/workflow?id=17f3d7e52777d2e8, https://usegalaxy.org/published/workflow?id=1d1ee1fad4e20eeb, https://usegalaxy.org/published/workflow?id=1d748868e78275dd, https://usegalaxy.org/published/workflow?id=1e1d7fac7e241768, https://usegalaxy.org/published/workflow?id=1e53fcd07ae5d859, https://usegalaxy.org/published/workflow?id=1f28e673ea725541, https://usegalaxy.org/published/workflow?id=1f4dc0488f0554c6, https://usegalaxy.org/published/workflow?id=1ffc71df8eeed57e, https://usegalaxy.org/published/workflow?id=202648c6c615929b, https://usegalaxy.org/published/workflow?id=20fe561687df596c, https://usegalaxy.org/published/workflow?id=2219c4aa7eb8cfb8, https://usegalaxy.org/published/workflow?id=270e2cb6b02afc9c, https://usegalaxy.org/published/workflow?id=2957924403998f3a, https://usegalaxy.org/published/workflow?id=2b5346b94358df88, https://usegalaxy.org/published/workflow?id=2cc5472ad7c039d1, https://usegalaxy.org/published/workflow?id=336795e890851c21, https://usegalaxy.org/published/workflow?id=3565de0b5f5da36f, https://usegalaxy.org/published/workflow?id=3673a1ced343d0d0, https://usegalaxy.org/published/workflow?id=38cc6577c9b15275, https://usegalaxy.org/published/workflow?id=3e6c9ab5ef3250ae, https://usegalaxy.org/published/workflow?id=41efc922cf146e0c, https://usegalaxy.org/published/workflow?id=43ca7614f6bb03d2, https://usegalaxy.org/published/workflow?id=46d035f814a9b4f8, https://usegalaxy.org/published/workflow?id=46e718fb8eeb4d54, https://usegalaxy.org/published/workflow?id=470b41d0e43bb46b, https://usegalaxy.org/published/workflow?id=472f73c3e81da1d9, https://usegalaxy.org/published/workflow?id=49f8b32c3206f76c, https://usegalaxy.org/published/workflow?id=506acac8c6a58d5e, https://usegalaxy.org/published/workflow?id=527adadecbab2eb6, https://usegalaxy.org/published/workflow?id=528ed34505b1a993, https://usegalaxy.org/published/workflow?id=529c6c68df669c51, https://usegalaxy.org/published/workflow?id=52bde903adbbaf60, https://usegalaxy.org/published/workflow?id=52e2b69787ca7a17, https://usegalaxy.org/published/workflow?id=53fdff74729a6780, https://usegalaxy.org/published/workflow?id=553125cd799e5982, https://usegalaxy.org/published/workflow?id=5641d1cbe795203f, https://usegalaxy.org/published/workflow?id=59007e2bc9c807ee, https://usegalaxy.org/published/workflow?id=5d1208bd49f97aeb, https://usegalaxy.org/published/workflow?id=60b9910b7bb69f47, https://usegalaxy.org/published/workflow?id=62ae08ab1133c22f, https://usegalaxy.org/published/workflow?id=62b052f47ccf0a8c, https://usegalaxy.org/published/workflow?id=676b88d0aac13fa5, https://usegalaxy.org/published/workflow?id=67e56a9919ed84f7, https://usegalaxy.org/published/workflow?id=68d05aae72fcd2c9, https://usegalaxy.org/published/workflow?id=6a174e7498434bd5, https://usegalaxy.org/published/workflow?id=6cb8b40b819f2764, https://usegalaxy.org/published/workflow?id=6d60c4491138813a, https://usegalaxy.org/published/workflow?id=6db96a9c7e4b8d14, https://usegalaxy.org/published/workflow?id=725f7ffa1cffa069, https://usegalaxy.org/published/workflow?id=75fffbce810acaf3, https://usegalaxy.org/published/workflow?id=778a8867b0a6ea4f, https://usegalaxy.org/published/workflow?id=7b9e17cb1d72d7e4, https://usegalaxy.org/published/workflow?id=7c4a2339b17a8930, https://usegalaxy.org/published/workflow?id=7fb4dae5daab0522, https://usegalaxy.org/published/workflow?id=8095deba606ebd5e, https://usegalaxy.org/published/workflow?id=85bc37a59a6ea443, https://usegalaxy.org/published/workflow?id=868acaf49d0743ec, https://usegalaxy.org/published/workflow?id=885f0e66fa6b8790, https://usegalaxy.org/published/workflow?id=88e10493f7e6b9d5, https://usegalaxy.org/published/workflow?id=8a215695e7b57cf5, https://usegalaxy.org/published/workflow?id=8bf608c6fd0dabd0, https://usegalaxy.org/published/workflow?id=8daa91d54040ba95, https://usegalaxy.org/published/workflow?id=907aaf55487ddf43, https://usegalaxy.org/published/workflow?id=91806144e90637e8, https://usegalaxy.org/published/workflow?id=91a4daecbb97d03e, https://usegalaxy.org/published/workflow?id=9255c0c9017b139f, https://usegalaxy.org/published/workflow?id=93cb976bd4ae546e, https://usegalaxy.org/published/workflow?id=93e69c7e7a857ca3, https://usegalaxy.org/published/workflow?id=96ae2544e22d34c5, https://usegalaxy.org/published/workflow?id=97c20a819394e381, https://usegalaxy.org/published/workflow?id=98a4b90f7fc2bfce, https://usegalaxy.org/published/workflow?id=99ee567c092fb34c, https://usegalaxy.org/published/workflow?id=9b32025036bdacb9, https://usegalaxy.org/published/workflow?id=9b5ae15bb9aaba48, https://usegalaxy.org/published/workflow?id=9c0bbf9e1c90cd66, https://usegalaxy.org/published/workflow?id=9d2d8c39b63d8ef0, https://usegalaxy.org/published/workflow?id=9d456396b9cd79d7, https://usegalaxy.org/published/workflow?id=9e9a027e0c294a79, https://usegalaxy.org/published/workflow?id=9eb29b71d7effefc, https://usegalaxy.org/published/workflow?id=a164d857439a126f, https://usegalaxy.org/published/workflow?id=a4a56efb37d845bf, https://usegalaxy.org/published/workflow?id=a89008fccc1f1d17, https://usegalaxy.org/published/workflow?id=a99a938953be5fd6, https://usegalaxy.org/published/workflow?id=adb86df9061dca2b, https://usegalaxy.org/published/workflow?id=af5d714396856e9a, https://usegalaxy.org/published/workflow?id=afd7633a34d68704, https://usegalaxy.org/published/workflow?id=b1dc9cf054a63be5, https://usegalaxy.org/published/workflow?id=b5e8f4a0ff226921, https://usegalaxy.org/published/workflow?id=b63d1e1024cc3295, https://usegalaxy.org/published/workflow?id=b78a75ae89ae4c79, https://usegalaxy.org/published/workflow?id=bb25ac3ba4863424, https://usegalaxy.org/published/workflow?id=c74e3a24751d9924, https://usegalaxy.org/published/workflow?id=c81833a367445f98, https://usegalaxy.org/published/workflow?id=ca36eebd59575df3, https://usegalaxy.org/published/workflow?id=cb03300161109123, https://usegalaxy.org/published/workflow?id=cbbd7e95041d9429, https://usegalaxy.org/published/workflow?id=cd5f803c80875b9c, https://usegalaxy.org/published/workflow?id=cd824d8631d6a55e, https://usegalaxy.org/published/workflow?id=cf3320614654adfe, https://usegalaxy.org/published/workflow?id=d00ac64dcd07f91a, https://usegalaxy.org/published/workflow?id=d4029ce1344e874a, https://usegalaxy.org/published/workflow?id=d903c7215a88c79f, https://usegalaxy.org/published/workflow?id=dab54002b3c0e351, https://usegalaxy.org/published/workflow?id=dbc650d226e89013, https://usegalaxy.org/published/workflow?id=dcf658333596d76a, https://usegalaxy.org/published/workflow?id=de29cd965a2e93d3, https://usegalaxy.org/published/workflow?id=df1fa0b73f741a9c, https://usegalaxy.org/published/workflow?id=df24d76ebf13e3c1, https://usegalaxy.org/published/workflow?id=dff3cf6921b3d4d6, https://usegalaxy.org/published/workflow?id=e0ec503626fa0d58, https://usegalaxy.org/published/workflow?id=e42a07b777c9f9dc, https://usegalaxy.org/published/workflow?id=e51aaf4d6b16b4d4, https://usegalaxy.org/published/workflow?id=e58a87508a337b91, https://usegalaxy.org/published/workflow?id=e7030b62a3335bd7, https://usegalaxy.org/published/workflow?id=e899acc664c8b808, https://usegalaxy.org/published/workflow?id=e9ffad95baa43478, https://usegalaxy.org/published/workflow?id=ea4c2defce2f5258, https://usegalaxy.org/published/workflow?id=eafe4aa62a600e1d, https://usegalaxy.org/published/workflow?id=ee3b8d7ba29da11c, https://usegalaxy.org/published/workflow?id=f0ee8bcd7c8fadca, https://usegalaxy.org/published/workflow?id=f3c8093c5b8a7233, https://usegalaxy.org/published/workflow?id=fcbe12fc4eaae12e, https://usegalaxy.org/published/workflow?id=feeec17310351914, https://workflowhub.eu/workflows/1494?version=1, https://workflowhub.eu/workflows/1562?version=1, https://workflowhub.eu/workflows/1568?version=1, https://workflowhub.eu/workflows/1659?version=1, https://workflowhub.eu/workflows/1661?version=1, https://workflowhub.eu/workflows/1678?version=1, https://workflowhub.eu/workflows/399?version=19, https://workflowhub.eu/workflows/400?version=12, https://workflowhub.eu/workflows/401?version=13, https://workflowhub.eu/workflows/625?version=23 |
epigenetics/atac-seq, epigenetics/cut_and_run, sequence-analysis/mapping, single-cell/scrna-preprocessing, variant-analysis/non-dip, variant-analysis/somatic-variants |
|
bamutil |
bamutil_clip_overlap, bamutil_diff |
bamUtil is a repository that contains several programs that perform operations on SAM/BAM files. |
2021-03-29 |
https://github.com/statgen/bamUtil |
|
bamutil |
1.0.15 |
To update |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/bamutil |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bamutil |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
21 |
21 |
47 |
47 |
23 |
23 |
71 |
71 |
1 |
1 |
318 |
318 |
0 |
0 |
0 |
0 |
436 |
436 |
45 |
45 |
|
|
|
bandage |
bandage_image, bandage_info |
Bandage - A Bioinformatics Application for Navigating De novo Assembly Graphs Easily |
2018-09-06 |
https://github.com/rrwick/Bandage |
2022.09 |
bandage_ng |
2025.6.1 |
To update |
Visualization |
Sequence assembly visualisation |
Sequence assembly visualisation |
Genomics, Sequence assembly |
Genomics, Sequence assembly |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/bandage |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bandage |
bandage |
Bandage |
GUI program that allows users to interact with the assembly graphs made by de novo assemblers such as Velvet, SPAdes, MEGAHIT and others. It visualises assembly graphs, with connections, using graph layout algorithms. |
|
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
4274 |
4419 |
63829 |
65480 |
4266 |
4266 |
57281 |
57281 |
2682 |
2682 |
21301 |
21301 |
266 |
266 |
7771 |
7771 |
151833 |
150182 |
11633 |
11488 |
https://dev.workflowhub.eu/workflows/1005?version=1, https://dev.workflowhub.eu/workflows/1091?version=1, https://dev.workflowhub.eu/workflows/1103?version=1, https://dev.workflowhub.eu/workflows/1107?version=1, https://dev.workflowhub.eu/workflows/1120?version=1, https://dev.workflowhub.eu/workflows/1127?version=3, https://dev.workflowhub.eu/workflows/1132?version=2, https://dev.workflowhub.eu/workflows/1135?version=2, https://dev.workflowhub.eu/workflows/1139?version=1, https://dev.workflowhub.eu/workflows/1170?version=2, https://dev.workflowhub.eu/workflows/1178?version=1, https://dev.workflowhub.eu/workflows/1197?version=2, https://dev.workflowhub.eu/workflows/1435?version=1, https://dev.workflowhub.eu/workflows/39?version=1, https://dev.workflowhub.eu/workflows/584?version=1, https://dev.workflowhub.eu/workflows/585?version=1, https://dev.workflowhub.eu/workflows/586?version=1, https://usegalaxy.eu/published/workflow?id=002a51bdef00e14d, https://usegalaxy.eu/published/workflow?id=01fe4c590e608103, https://usegalaxy.eu/published/workflow?id=03be9d62e8e4a129, https://usegalaxy.eu/published/workflow?id=0404013d5c27210d, https://usegalaxy.eu/published/workflow?id=085c3a4c89d137b5, https://usegalaxy.eu/published/workflow?id=089e5e83b1de0511, https://usegalaxy.eu/published/workflow?id=0ebfab0e957b7267, https://usegalaxy.eu/published/workflow?id=1151052f4393852a, https://usegalaxy.eu/published/workflow?id=1483534f49b826bf, https://usegalaxy.eu/published/workflow?id=152223c8aed27357, https://usegalaxy.eu/published/workflow?id=194a05d42687b524, https://usegalaxy.eu/published/workflow?id=1ac0a15758277730, https://usegalaxy.eu/published/workflow?id=1bb084f1bc102734, https://usegalaxy.eu/published/workflow?id=1da7ac8eaf891f39, https://usegalaxy.eu/published/workflow?id=1e02a7292e9974b1, https://usegalaxy.eu/published/workflow?id=1f2a1438e41188f2, https://usegalaxy.eu/published/workflow?id=21a3f72851f29925, https://usegalaxy.eu/published/workflow?id=249c115413f17f28, https://usegalaxy.eu/published/workflow?id=2671a5f85b2cccfe, https://usegalaxy.eu/published/workflow?id=270b6f82efab28b2, https://usegalaxy.eu/published/workflow?id=2b888e200dfd91bc, https://usegalaxy.eu/published/workflow?id=2e0075791f7fa384, https://usegalaxy.eu/published/workflow?id=32d2f5340098bcbd, https://usegalaxy.eu/published/workflow?id=3303a04887a47675, https://usegalaxy.eu/published/workflow?id=342a5df69951e3d7, https://usegalaxy.eu/published/workflow?id=346b46e6316c6950, https://usegalaxy.eu/published/workflow?id=374797e58377c40f, https://usegalaxy.eu/published/workflow?id=379642036b6f5a66, https://usegalaxy.eu/published/workflow?id=39837ca09374598b, https://usegalaxy.eu/published/workflow?id=3a3e2d50fe7a9ee3, https://usegalaxy.eu/published/workflow?id=3d937648809ca4e7, https://usegalaxy.eu/published/workflow?id=3e255a5b7026d26e, https://usegalaxy.eu/published/workflow?id=3eb6663a66f8e69a, https://usegalaxy.eu/published/workflow?id=3f5414bb38b47fcf, https://usegalaxy.eu/published/workflow?id=416141b245073406, https://usegalaxy.eu/published/workflow?id=4216424f032c055f, https://usegalaxy.eu/published/workflow?id=44e53ea319e07daa, https://usegalaxy.eu/published/workflow?id=471eb8b4c54f897d, https://usegalaxy.eu/published/workflow?id=475ea16f943cc013, https://usegalaxy.eu/published/workflow?id=4856e3522b2ee059, https://usegalaxy.eu/published/workflow?id=497b82d3b92dc076, https://usegalaxy.eu/published/workflow?id=4c3a9b574f37eebb, https://usegalaxy.eu/published/workflow?id=4d41ee83fc0040d4, https://usegalaxy.eu/published/workflow?id=4ddbffe4b3fef275, https://usegalaxy.eu/published/workflow?id=54590ccd11ffbf65, https://usegalaxy.eu/published/workflow?id=5826e573b6f93762, https://usegalaxy.eu/published/workflow?id=585c21b7b1d864fc, https://usegalaxy.eu/published/workflow?id=5ad406442ec21345, https://usegalaxy.eu/published/workflow?id=5e1906290f5b4d8a, https://usegalaxy.eu/published/workflow?id=62c47e3c9d4f3aa3, https://usegalaxy.eu/published/workflow?id=6573f3b1606b7f09, https://usegalaxy.eu/published/workflow?id=69cdd404592535ec, https://usegalaxy.eu/published/workflow?id=71a6d128a09210f0, https://usegalaxy.eu/published/workflow?id=723e718f37e9ab91, https://usegalaxy.eu/published/workflow?id=7337d15d121596da, https://usegalaxy.eu/published/workflow?id=77e5bbd317750915, https://usegalaxy.eu/published/workflow?id=79b5afb125e3c3da, https://usegalaxy.eu/published/workflow?id=7aa32aba3fde0708, https://usegalaxy.eu/published/workflow?id=7b755497d168cb13, https://usegalaxy.eu/published/workflow?id=7e48134082dab0a3, https://usegalaxy.eu/published/workflow?id=847403b72dd346ff, https://usegalaxy.eu/published/workflow?id=86cf02cc0868d238, https://usegalaxy.eu/published/workflow?id=8b2f53745e720d0f, https://usegalaxy.eu/published/workflow?id=8be366ad6a42408b, https://usegalaxy.eu/published/workflow?id=9219557de92e0203, https://usegalaxy.eu/published/workflow?id=92dafb3d1c06e074, https://usegalaxy.eu/published/workflow?id=93d1035a307fe63d, https://usegalaxy.eu/published/workflow?id=95f420d8856bf725, https://usegalaxy.eu/published/workflow?id=968f0ac2617aa524, https://usegalaxy.eu/published/workflow?id=98bfad0c684011e9, https://usegalaxy.eu/published/workflow?id=9c0b67496dfe52b2, https://usegalaxy.eu/published/workflow?id=9ddb703e1db13504, https://usegalaxy.eu/published/workflow?id=9f2d18f0d0896e8b, https://usegalaxy.eu/published/workflow?id=a337bfb2eb1e583f, https://usegalaxy.eu/published/workflow?id=a6dd62ab4b9a0725, https://usegalaxy.eu/published/workflow?id=a847773b563b2328, https://usegalaxy.eu/published/workflow?id=a84bac86ec183d46, https://usegalaxy.eu/published/workflow?id=aa6dc57f5c67fb4b, https://usegalaxy.eu/published/workflow?id=ac6eb99f70d35999, https://usegalaxy.eu/published/workflow?id=ae74f60cd20d56bc, https://usegalaxy.eu/published/workflow?id=b211fceaecf41c9e, https://usegalaxy.eu/published/workflow?id=b4948afacccfefdb, https://usegalaxy.eu/published/workflow?id=b4de76c0a4d0e23a, https://usegalaxy.eu/published/workflow?id=b93333efdab316d8, https://usegalaxy.eu/published/workflow?id=bc32937d505135ab, https://usegalaxy.eu/published/workflow?id=bcf99cc0469db276, https://usegalaxy.eu/published/workflow?id=bf48b0eb15e8ff75, https://usegalaxy.eu/published/workflow?id=c48807045e258dd8, https://usegalaxy.eu/published/workflow?id=c4c2e669b86cffbc, https://usegalaxy.eu/published/workflow?id=c508c00e81018dd8, https://usegalaxy.eu/published/workflow?id=c702c76cadebac30, https://usegalaxy.eu/published/workflow?id=c9ef2d2ce92e2dfb, https://usegalaxy.eu/published/workflow?id=caba6d3d7db648e9, https://usegalaxy.eu/published/workflow?id=d2f75f70c33394ee, https://usegalaxy.eu/published/workflow?id=dc27453c438577f6, https://usegalaxy.eu/published/workflow?id=dc7107896a3f2964, https://usegalaxy.eu/published/workflow?id=de9cf573314f416c, https://usegalaxy.eu/published/workflow?id=e138640778b7414c, https://usegalaxy.eu/published/workflow?id=e532d98f4b368666, https://usegalaxy.eu/published/workflow?id=e7aebe58411d97ed, https://usegalaxy.eu/published/workflow?id=e8f9e1d911683b22, https://usegalaxy.eu/published/workflow?id=ea485dbabc76488d, https://usegalaxy.eu/published/workflow?id=eb5ab8bc82569eee, https://usegalaxy.eu/published/workflow?id=ec79f14ab91cd933, https://usegalaxy.eu/published/workflow?id=ecf48fa50af560a0, https://usegalaxy.eu/published/workflow?id=ef83f7fd2176a244, https://usegalaxy.eu/published/workflow?id=f1ca4289ee4f67bb, https://usegalaxy.eu/published/workflow?id=f38745208494d4ab, https://usegalaxy.eu/published/workflow?id=f578a097b4339025, https://usegalaxy.eu/published/workflow?id=fb015e398373ea8a, https://usegalaxy.eu/published/workflow?id=fc0b9efa7d2e61e6, https://usegalaxy.eu/published/workflow?id=fc25c1f8c6667c87, https://usegalaxy.eu/published/workflow?id=fca458178b3c794a, https://usegalaxy.eu/published/workflow?id=fd649ac4d4872c81, https://usegalaxy.fr/published/workflow?id=5bb882218afda132, https://usegalaxy.org.au/published/workflow?id=02eebe3d909206ab, https://usegalaxy.org.au/published/workflow?id=044b6b475b4db27a, https://usegalaxy.org.au/published/workflow?id=084bb76cf47d7060, https://usegalaxy.org.au/published/workflow?id=08fac3b4c128e597, https://usegalaxy.org.au/published/workflow?id=0af0ea50f1237952, https://usegalaxy.org.au/published/workflow?id=0cc8c8875df6bccb, https://usegalaxy.org.au/published/workflow?id=10355b2680374a03, https://usegalaxy.org.au/published/workflow?id=1ad4c47cee851dda, https://usegalaxy.org.au/published/workflow?id=1eb3e1452c672480, https://usegalaxy.org.au/published/workflow?id=22bd45f60c60a338, https://usegalaxy.org.au/published/workflow?id=2470cb61ba51288c, https://usegalaxy.org.au/published/workflow?id=2cb16d321a804b1a, https://usegalaxy.org.au/published/workflow?id=2d45d7138d8715b4, https://usegalaxy.org.au/published/workflow?id=2e29b21cdec7d0cc, https://usegalaxy.org.au/published/workflow?id=319e9d693fac8dce, https://usegalaxy.org.au/published/workflow?id=35f39173f0ac9179, https://usegalaxy.org.au/published/workflow?id=3604307ec2835628, https://usegalaxy.org.au/published/workflow?id=36604d0ab0dee988, https://usegalaxy.org.au/published/workflow?id=36f54eda8568355d, https://usegalaxy.org.au/published/workflow?id=371c9892d261cee2, https://usegalaxy.org.au/published/workflow?id=38d992baf9a2a2bc, https://usegalaxy.org.au/published/workflow?id=3df7f45b7b388f8c, https://usegalaxy.org.au/published/workflow?id=40666ceb68d101ac, https://usegalaxy.org.au/published/workflow?id=41795303a88d9e94, https://usegalaxy.org.au/published/workflow?id=4267bd1e4cfd1901, https://usegalaxy.org.au/published/workflow?id=479c6b0a96ea1610, https://usegalaxy.org.au/published/workflow?id=51bad198f1fd1215, https://usegalaxy.org.au/published/workflow?id=52065a4100b11184, https://usegalaxy.org.au/published/workflow?id=5550585ffc3d8d0e, https://usegalaxy.org.au/published/workflow?id=5b0c0e34394afed1, https://usegalaxy.org.au/published/workflow?id=5b32e2f0d390a4ba, https://usegalaxy.org.au/published/workflow?id=5f4f874e49515555, https://usegalaxy.org.au/published/workflow?id=60c0dec52cdca708, https://usegalaxy.org.au/published/workflow?id=63789b6f82172679, https://usegalaxy.org.au/published/workflow?id=68b2961117e62890, https://usegalaxy.org.au/published/workflow?id=6c27019d03dd49d8, https://usegalaxy.org.au/published/workflow?id=6c9129acb9d98afe, https://usegalaxy.org.au/published/workflow?id=7c343e5b55474d19, https://usegalaxy.org.au/published/workflow?id=803ef29108e36e58, https://usegalaxy.org.au/published/workflow?id=813a4938397cf6ee, https://usegalaxy.org.au/published/workflow?id=8926e592f2e60863, https://usegalaxy.org.au/published/workflow?id=8a40059343cf4b87, https://usegalaxy.org.au/published/workflow?id=8a6233015db6dd24, https://usegalaxy.org.au/published/workflow?id=8bf8c9929249f37d, https://usegalaxy.org.au/published/workflow?id=8dd86497bc15d981, https://usegalaxy.org.au/published/workflow?id=8e8a5cce9f3f2f67, https://usegalaxy.org.au/published/workflow?id=91ee716be8bfd508, https://usegalaxy.org.au/published/workflow?id=9642aadb83c4f752, https://usegalaxy.org.au/published/workflow?id=970dc0d8bd74707f, https://usegalaxy.org.au/published/workflow?id=98f660971010d11d, https://usegalaxy.org.au/published/workflow?id=9c60b83feaa22415, https://usegalaxy.org.au/published/workflow?id=9e0bae0505ee7c07, https://usegalaxy.org.au/published/workflow?id=a02c102e179596cb, https://usegalaxy.org.au/published/workflow?id=a345bf84eb9bf6b2, https://usegalaxy.org.au/published/workflow?id=a525966251895f8a, https://usegalaxy.org.au/published/workflow?id=ad10cd704268dcf0, https://usegalaxy.org.au/published/workflow?id=b19fa49405117317, https://usegalaxy.org.au/published/workflow?id=b1f45d2f8d8343e9, https://usegalaxy.org.au/published/workflow?id=b5131e3a0ef2676e, https://usegalaxy.org.au/published/workflow?id=b5403e4fff2961f9, https://usegalaxy.org.au/published/workflow?id=b59fada651043735, https://usegalaxy.org.au/published/workflow?id=b6bad1f167257248, https://usegalaxy.org.au/published/workflow?id=b9faf6a3f48fc11b, https://usegalaxy.org.au/published/workflow?id=be96bb47b6d6435a, https://usegalaxy.org.au/published/workflow?id=c4d23297f6fbf5f3, https://usegalaxy.org.au/published/workflow?id=c6a71573a299eb3a, https://usegalaxy.org.au/published/workflow?id=c7e1f666a3366823, https://usegalaxy.org.au/published/workflow?id=c7f2d6490128dc3c, https://usegalaxy.org.au/published/workflow?id=c9b7de574fb2f2d5, https://usegalaxy.org.au/published/workflow?id=d298edda13b382e7, https://usegalaxy.org.au/published/workflow?id=d42d7b1aa47e870f, https://usegalaxy.org.au/published/workflow?id=d7f3fc810261e419, https://usegalaxy.org.au/published/workflow?id=d832905fbaf2ca31, https://usegalaxy.org.au/published/workflow?id=d9571b3dfef34e5e, https://usegalaxy.org.au/published/workflow?id=d9c181fd954b629a, https://usegalaxy.org.au/published/workflow?id=df4e186069552649, https://usegalaxy.org.au/published/workflow?id=e031af90daa2cadf, https://usegalaxy.org.au/published/workflow?id=e28ca83f14f4ede5, https://usegalaxy.org.au/published/workflow?id=ea687c5613fcce27, https://usegalaxy.org.au/published/workflow?id=ef8c22c2525063a2, https://usegalaxy.org.au/published/workflow?id=f2541030f6d70b59, https://usegalaxy.org.au/published/workflow?id=f7a866159f1eaecf, https://usegalaxy.org.au/published/workflow?id=f83a3cda33131fb8, https://usegalaxy.org.au/published/workflow?id=fc3c83b11f527977, https://usegalaxy.org.au/published/workflow?id=fc664a96d8099652, https://usegalaxy.org.au/published/workflow?id=fe1e7fa0bc437ed8, https://usegalaxy.org.au/published/workflow?id=fff2e49bc90e38ca, https://usegalaxy.org/published/workflow?id=0602c14704dbe1ff, https://usegalaxy.org/published/workflow?id=07e873a6d75dfe9f, https://usegalaxy.org/published/workflow?id=0993daadf2db5f51, https://usegalaxy.org/published/workflow?id=0e30324072570abb, https://usegalaxy.org/published/workflow?id=1245e9435cbc3985, https://usegalaxy.org/published/workflow?id=137d0f05a71d7acb, https://usegalaxy.org/published/workflow?id=1eec2586d1ff908b, https://usegalaxy.org/published/workflow?id=25a9f0693ff6d327, https://usegalaxy.org/published/workflow?id=284150bb1f296378, https://usegalaxy.org/published/workflow?id=2c5c627c08563398, https://usegalaxy.org/published/workflow?id=2d994cc02ec05ede, https://usegalaxy.org/published/workflow?id=305fb9f84b053713, https://usegalaxy.org/published/workflow?id=3ba73f679558017c, https://usegalaxy.org/published/workflow?id=3db4eb1ecb588d44, https://usegalaxy.org/published/workflow?id=3f252e077e0bcce5, https://usegalaxy.org/published/workflow?id=3f7550d5d2bf0b96, https://usegalaxy.org/published/workflow?id=408c799822cbf6ea, https://usegalaxy.org/published/workflow?id=4161cfd67ed94b5d, https://usegalaxy.org/published/workflow?id=435f0340bf00c940, https://usegalaxy.org/published/workflow?id=44781c8b0bd667ed, https://usegalaxy.org/published/workflow?id=484f8fcf21d67376, https://usegalaxy.org/published/workflow?id=498a8c6329ca5728, https://usegalaxy.org/published/workflow?id=4a0ad87aa5aa558a, https://usegalaxy.org/published/workflow?id=4bf73376661baafd, https://usegalaxy.org/published/workflow?id=4d1279007d0137fa, https://usegalaxy.org/published/workflow?id=5039ae2c81d0aba8, https://usegalaxy.org/published/workflow?id=524602abe59b18f7, https://usegalaxy.org/published/workflow?id=547f86db467bf620, https://usegalaxy.org/published/workflow?id=57e6345fda3e2682, https://usegalaxy.org/published/workflow?id=597c4d54f8a8ebe7, https://usegalaxy.org/published/workflow?id=5cd56232e873beab, https://usegalaxy.org/published/workflow?id=5dfec2a3ae5fa765, https://usegalaxy.org/published/workflow?id=653d553ac2fa51c8, https://usegalaxy.org/published/workflow?id=683e725f672b7d9b, https://usegalaxy.org/published/workflow?id=6b511b47176893e3, https://usegalaxy.org/published/workflow?id=7072731b51e16923, https://usegalaxy.org/published/workflow?id=7dba74c915f63dc1, https://usegalaxy.org/published/workflow?id=7f6900852a81d121, https://usegalaxy.org/published/workflow?id=8111bb9bb26bb665, https://usegalaxy.org/published/workflow?id=81f1f0fd6d9235fd, https://usegalaxy.org/published/workflow?id=864da6858d34df08, https://usegalaxy.org/published/workflow?id=8a350e0d96e937a5, https://usegalaxy.org/published/workflow?id=8cfbaa14cff5a633, https://usegalaxy.org/published/workflow?id=90f5b512997c70f8, https://usegalaxy.org/published/workflow?id=932b3bc10186f73e, https://usegalaxy.org/published/workflow?id=936ed7447c8e0a2d, https://usegalaxy.org/published/workflow?id=93c1fef4472aa7a8, https://usegalaxy.org/published/workflow?id=961dac8100c6c70c, https://usegalaxy.org/published/workflow?id=9938a81fb6911412, https://usegalaxy.org/published/workflow?id=9ac1e4efe310b3b3, https://usegalaxy.org/published/workflow?id=9ddfdc9d6cacea88, https://usegalaxy.org/published/workflow?id=9e5c5ddb60a24889, https://usegalaxy.org/published/workflow?id=a8e0f77cd6ef49f9, https://usegalaxy.org/published/workflow?id=ab0be4897d5355ac, https://usegalaxy.org/published/workflow?id=acada5044d64a30a, https://usegalaxy.org/published/workflow?id=b661fb850c4b4b01, https://usegalaxy.org/published/workflow?id=b6d535f210efa18e, https://usegalaxy.org/published/workflow?id=bb1cb6abfe84a646, https://usegalaxy.org/published/workflow?id=bbc894a79eb0e769, https://usegalaxy.org/published/workflow?id=bc72dcbca89ca35d, https://usegalaxy.org/published/workflow?id=bd6bfd338ffb9637, https://usegalaxy.org/published/workflow?id=bfd2e7e63d3e6856, https://usegalaxy.org/published/workflow?id=bff206b4625375bc, https://usegalaxy.org/published/workflow?id=c0a9a2d53b8660de, https://usegalaxy.org/published/workflow?id=c454c930ccfb0d3f, https://usegalaxy.org/published/workflow?id=c65bec6c332bf740, https://usegalaxy.org/published/workflow?id=c8d74054c1820087, https://usegalaxy.org/published/workflow?id=c983ea8a32662cd6, https://usegalaxy.org/published/workflow?id=cce88bc57b180d09, https://usegalaxy.org/published/workflow?id=d08135fa13d1745e, https://usegalaxy.org/published/workflow?id=d3f35215e6f45d79, https://usegalaxy.org/published/workflow?id=daaded719dcfd53b, https://usegalaxy.org/published/workflow?id=dae5d5e5df5c4dd7, https://usegalaxy.org/published/workflow?id=e4dd39237df58884, https://usegalaxy.org/published/workflow?id=f1a54b10d4afce8f, https://usegalaxy.org/published/workflow?id=f4d623a19b32370e, https://usegalaxy.org/published/workflow?id=fa26fd51caea53c7, https://usegalaxy.org/published/workflow?id=fb01e1a49793c8be, https://usegalaxy.org/published/workflow?id=fc7b14aafa0b421e, https://usegalaxy.org/published/workflow?id=fd40e50c9f1545ce, https://workflowhub.eu/workflows/1043?version=9, https://workflowhub.eu/workflows/1062?version=1, https://workflowhub.eu/workflows/1114?version=1, https://workflowhub.eu/workflows/1162?version=2, https://workflowhub.eu/workflows/1390?version=2, https://workflowhub.eu/workflows/1477?version=1, https://workflowhub.eu/workflows/1495?version=1, https://workflowhub.eu/workflows/1595?version=1, https://workflowhub.eu/workflows/1602?version=1, https://workflowhub.eu/workflows/1612?version=1, https://workflowhub.eu/workflows/1613?version=1, https://workflowhub.eu/workflows/1616?version=1, https://workflowhub.eu/workflows/1617?version=1, https://workflowhub.eu/workflows/1634?version=1, https://workflowhub.eu/workflows/1641?version=1, https://workflowhub.eu/workflows/221?version=3, https://workflowhub.eu/workflows/225?version=1, https://workflowhub.eu/workflows/406?version=1, https://workflowhub.eu/workflows/52?version=1, https://workflowhub.eu/workflows/605?version=1, https://workflowhub.eu/workflows/612?version=23, https://workflowhub.eu/workflows/641?version=25, https://workflowhub.eu/workflows/642?version=23, https://workflowhub.eu/workflows/750?version=2, https://workflowhub.eu/workflows/788?version=1, https://workflowhub.eu/workflows/789?version=1 |
assembly/ERGA-post-assembly-QC, assembly/assembly-with-preprocessing, assembly/chloroplast-assembly, assembly/largegenome, assembly/metagenomics-assembly, assembly/mrsa-illumina, assembly/mrsa-nanopore, microbiome/metagenomics-assembly, microbiome/pathogen-detection-from-nanopore-foodborne-data, microbiome/plasmid-metagenomics-nanopore |
|
barcode_splitter |
barcode_splitter |
A utility to split sequence files using multiple sets of barcodes |
2019-02-21 |
https://bitbucket.org/princeton_genomics/barcode_splitter/ |
0.18.4.0 |
barcode_splitter |
0.18.6 |
To update |
Fastq Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/barcode_splitter |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/barcode_splitter |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
baredsc |
baredsc_1d, baredsc_2d, baredsc_combine_1d, baredsc_combine_2d |
baredSC is a tool that uses a Monte-Carlo Markov Chain to estimate a confidence interval on the probability density function (PDF) of expression of one or two genes from single-cell RNA-seq data. |
2023-09-06 |
https://github.com/lldelisle/baredSC |
1.1.3 |
baredsc |
1.1.3 |
Up-to-date |
Single Cell, Transcriptomics, Visualization |
Data retrieval, Expression correlation analysis, Differential gene expression profiling |
Data retrieval, Expression correlation analysis, Differential gene expression profiling |
RNA-Seq, Cytometry, Transcriptomics, Gene transcripts, Statistics and probability |
RNA-Seq, Cytometry, Transcriptomics, Gene transcripts, Statistics and probability |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/baredsc |
baredsc |
baredSC |
The baredSC (Bayesian Approach to Retreive Expression Distribution of Single Cell) is a tool that uses a Monte-Carlo Markov Chain to estimate a confidence interval on the probability density function (PDF) of expression of one or two genes from single-cell RNA-seq data. |
|
4 |
4 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
5 |
5 |
114 |
114 |
10 |
10 |
33 |
33 |
1 |
1 |
168 |
168 |
0 |
0 |
0 |
0 |
315 |
315 |
16 |
16 |
https://usegalaxy.eu/published/workflow?id=2da3c41ad5c11c3b, https://usegalaxy.eu/published/workflow?id=3410a75a2a4899dc, https://usegalaxy.eu/published/workflow?id=4025b5dca188e6a4, https://usegalaxy.eu/published/workflow?id=49d913cefc5daaf3, https://usegalaxy.eu/published/workflow?id=4eb8aec8a5be98b3, https://usegalaxy.eu/published/workflow?id=72c03f7b5bc9fb9d, https://usegalaxy.eu/published/workflow?id=7341ca7572447d60, https://usegalaxy.eu/published/workflow?id=967f890c0883f72a, https://usegalaxy.eu/published/workflow?id=b3d38025c7ff72ed, https://usegalaxy.eu/published/workflow?id=cdf782de6c67477a, https://usegalaxy.eu/published/workflow?id=da41880826c3d758, https://usegalaxy.eu/published/workflow?id=fb08922b0bd812a9, https://usegalaxy.org.au/published/workflow?id=2436bc493e76f438, https://usegalaxy.org.au/published/workflow?id=31a664d151978dc6, https://usegalaxy.org.au/published/workflow?id=481c666fbc7ffa02, https://usegalaxy.org.au/published/workflow?id=51aaafbd00b91717, https://usegalaxy.org.au/published/workflow?id=579da54989f5d55c, https://usegalaxy.org.au/published/workflow?id=5e3ff382ab802baf, https://usegalaxy.org.au/published/workflow?id=ac4799c5009f98d3, https://usegalaxy.org.au/published/workflow?id=b73280eaeb77a0a9, https://usegalaxy.org.au/published/workflow?id=d01ff75a4943fa79, https://usegalaxy.org.au/published/workflow?id=d6521e6c247eeaaf, https://usegalaxy.org.au/published/workflow?id=ecafc3d43b4c63f7, https://usegalaxy.org.au/published/workflow?id=ffeef94c4539c3e5, https://usegalaxy.org/published/workflow?id=0f6bb7847f8769af, https://usegalaxy.org/published/workflow?id=1a08efa0bf83d225, https://usegalaxy.org/published/workflow?id=3d0f92e7f63978b6, https://usegalaxy.org/published/workflow?id=6cad14c78ec330ac, https://usegalaxy.org/published/workflow?id=6f1da4e0830e6051, https://usegalaxy.org/published/workflow?id=84112c29ee53a5db, https://usegalaxy.org/published/workflow?id=92b67534076ae889, https://usegalaxy.org/published/workflow?id=a8fa62e35610d85e, https://usegalaxy.org/published/workflow?id=e3366346808b1f55, https://usegalaxy.org/published/workflow?id=ebdf324634e7243c, https://usegalaxy.org/published/workflow?id=fd511165e30cb62c, https://usegalaxy.org/published/workflow?id=fda56c998bb88e2a, https://usegalaxy.org/published/workflow?id=ff84d87fd3638a3f, https://workflowhub.eu/workflows/615?version=6 |
|
|
barrnap |
barrnap |
Contains the Barrnap tool for finding ribosomal RNAs in FASTA sequences. |
2017-08-25 |
https://github.com/tseemann/barrnap |
1.2.2 |
barrnap |
0.9 |
To update |
Sequence Analysis |
Gene prediction |
Gene prediction |
Genomics, Model organisms, Model organisms |
Genomics, Model organisms, Model organisms |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/barrnap |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/barrnap |
barrnap |
Barrnap |
Predict the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S). |
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
414 |
414 |
7731 |
7731 |
0 |
0 |
0 |
0 |
240 |
350 |
7118 |
8132 |
17 |
17 |
235 |
235 |
16098 |
15084 |
781 |
671 |
https://usegalaxy.eu/published/workflow?id=e8eb80ee09159bac, https://usegalaxy.eu/published/workflow?id=fe43cf59e48bf556 |
|
|
basil |
basil |
Breakpoint detection, including large insertions |
2019-05-22 |
https://github.com/seqan/anise_basil |
1.2.0 |
anise_basil |
1.2.0 |
Up-to-date |
Variant Analysis |
|
|
|
|
iuc |
|
https://github.com/galaxyproject/tools-iuc/tree/main/tools/basil |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
79 |
84 |
280 |
317 |
109 |
109 |
487 |
489 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
806 |
767 |
193 |
188 |
https://usegalaxy.org/published/workflow?id=e67b6da41e1e6932 |
|
|
bax2bam |
bax2bam |
BAX to BAM converter |
2019-10-12 |
https://github.com/pacificbiosciences/bax2bam/ |
0.0.11 |
bax2bam |
0.0.11 |
Up-to-date |
Convert Formats, Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/pax2bam |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bax2bam |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
20 |
26 |
154 |
208 |
32 |
32 |
212 |
212 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
420 |
366 |
58 |
52 |
|
|
|
bayescan |
BayeScan |
Detecting natural selection from population-based genetic data |
2017-03-09 |
http://cmpg.unibe.ch/software/BayeScan/index.html |
2.1 |
bayescan |
2.0.1 |
To update |
Sequence Analysis |
Statistical inference |
Statistical inference |
Genetics, Evolutionary biology, Statistics and probability, DNA polymorphism |
Genetics, Evolutionary biology, Statistics and probability, DNA polymorphism |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/bayescan/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bayescan |
bayescan |
BayeScan |
BAYEsian genome SCAN for outliers, aims at identifying candidate loci under natural selection from genetic data, using differences in allele frequencies between populations. It is based on the multinomial-Dirichlet model. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
32 |
32 |
104 |
104 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
104 |
104 |
32 |
32 |
|
|
|
bbgbigwig |
bbgtobigwig |
Make a coverage bigwig from bam, bed or gff, optionally with a chromosome length file. |
2024-06-14 |
https://www.encodeproject.org/software/bedgraphtobigwig/ |
0.1 |
ucsc-bedgraphtobigwig |
482 |
To update |
Convert Formats |
|
|
Sequence analysis |
Sequence analysis |
iuc |
https://www.encodeproject.org/software/bedgraphtobigwig/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bbgbigwig |
UCSC_Genome_Browser_Utilities |
UCSC Genome Browser Utilities |
Utilities for handling sequences and assemblies from the UCSC Genome Browser project. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
23 |
23 |
219 |
219 |
121 |
121 |
863 |
863 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1082 |
1082 |
144 |
144 |
https://usegalaxy.eu/published/workflow?id=2880a32a52d27743, https://usegalaxy.eu/published/workflow?id=e522be58f0bac656 |
epigenetics/formation_of_super-structures_on_xi |
|
bbtools |
bbtools_bbduk, bbtools_bbmap, bbtools_bbmerge, bbtools_bbnorm, bbtools_callvariants, bbtools_tadpole |
BBTools is a suite of fast, multithreaded bioinformatics tools designed for analysis of DNA and RNA sequence data.BBTools can handle common sequencing file formats such as fastq, fasta, sam, scarf, fasta+qual, compressed or raw,with autodetection of quality encoding and interleaving. It is written in Java and works on any platform supportingJava, including Linux, MacOS, and Microsoft Windows and Linux; there are no dependencies other than Java (version7 or higher). Program descriptions and options are shown when running the shell scripts with no parameters. |
2021-10-04 |
https://jgi.doe.gov/data-and-tools/bbtools/ |
39.08 |
bbmap |
39.33 |
To update |
Sequence Analysis |
RNA-Seq analysis, Sequence trimming, Read mapping, Sequence contamination filtering, Read binning, Sequence alignment |
RNA-Seq analysis, Sequence trimming, Read mapping, Sequence contamination filtering, Read binning, Sequence alignment |
Sequencing, RNA splicing, Whole genome sequencing, Phylogenetics, Metagenomics, RNA-Seq |
RNA splicing, Whole genome sequencing, Phylogenetics, Metagenomics, RNA-Seq |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bbtools |
bbmap |
BBMap |
BBMap is a fast splice-aware aligner for RNA and DNA. It is faster than almost all short-read aligners, yet retains unrivaled sensitivity and specificity, particularly for reads with many errors and indels. |
|
6 |
3 |
6 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
6 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
328 |
328 |
16089 |
16089 |
506 |
506 |
6953 |
6953 |
117 |
117 |
2968 |
2968 |
0 |
0 |
0 |
0 |
26010 |
26010 |
951 |
951 |
https://usegalaxy.org.au/published/workflow?id=25f65a29ce3c3ee0, https://workflowhub.eu/workflows/407?version=1, https://workflowhub.eu/workflows/519?version=1 |
|
|
bcftools |
bcftools_@EXECUTABLE@, bcftools_@EXECUTABLE@, bcftools_@EXECUTABLE@, bcftools_@EXECUTABLE@, bcftools_@EXECUTABLE@, bcftools_@EXECUTABLE@_from_vcf, bcftools_@EXECUTABLE@_to_vcf, bcftools_@EXECUTABLE@, bcftools_@EXECUTABLE@, bcftools_@EXECUTABLE@, bcftools_@EXECUTABLE@, bcftools_@EXECUTABLE@, bcftools_@EXECUTABLE@, bcftools_@EXECUTABLE@, bcftools_plugin_@PLUGIN_ID@, bcftools_plugin_@PLUGIN_ID@, bcftools_plugin_@PLUGIN_ID@, bcftools_plugin_@PLUGIN_ID@, bcftools_plugin_@PLUGIN_ID@, bcftools_plugin_@PLUGIN_ID@, bcftools_plugin_@PLUGIN_ID@, bcftools_plugin_@PLUGIN_ID@, bcftools_plugin_@PLUGIN_ID@, bcftools_plugin_@PLUGIN_ID@, bcftools_plugin_@PLUGIN_ID@, bcftools_plugin_@PLUGIN_ID@, bcftools_plugin_@PLUGIN_ID@, bcftools_@EXECUTABLE@, bcftools_@EXECUTABLE@_list_samples, bcftools_@EXECUTABLE@, bcftools_@EXECUTABLE@, bcftools_@EXECUTABLE@, bcftools_@EXECUTABLE@ |
BCFtools toolkit wrappers |
2015-08-12 |
https://samtools.github.io/bcftools/ |
1.15.1 |
bcftools |
1.22 |
To update |
Variant Analysis |
Data handling, Variant calling |
Data handling, Variant calling |
Genetic variation, DNA polymorphism, GWAS study, Genotyping experiment |
DNA polymorphism, GWAS study, Genotyping experiment |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bcftools |
bcftools |
BCFtools |
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
bctools |
bctools_convert_to_binary_barcode, bctools_extract_crosslinked_nucleotides, bctools_extract_alignment_ends, bctools_extract_barcodes, bctools_merge_pcr_duplicates, bctools_remove_tail, bctools_remove_spurious_events |
bctools is a set of tools for handling barcodes and UMIs in NGS data.bctools can be used to merge PCR duplicates according to unique molecular barcodes (UMIs),to extract barcodes from arbitrary positions relative to the read starts,to clean up readthroughs into UMIs with paired-end sequencing andhandles binary barcodes as used with uvCLAP and FLASH.License: Apache License 2.0 |
2017-10-05 |
https://github.com/dmaticzka/bctools |
0.2.2 |
bctools |
0.2.2 |
Up-to-date |
Sequence Analysis, Transcriptomics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bctools |
|
|
|
|
0 |
0 |
7 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
7 |
7 |
0 |
129 |
148 |
1978 |
3130 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3130 |
1978 |
148 |
129 |
https://dev.workflowhub.eu/workflows/1285?version=2, https://usegalaxy.eu/published/workflow?id=0c619b25c1394a09, https://usegalaxy.eu/published/workflow?id=153ba1581743d31f, https://usegalaxy.eu/published/workflow?id=24ddd188da35b061, https://usegalaxy.eu/published/workflow?id=6514e610c79df72c, https://usegalaxy.eu/published/workflow?id=8fb156020285e049, https://usegalaxy.eu/published/workflow?id=b619339f4e1c6fdf, https://usegalaxy.eu/published/workflow?id=f5be5bcf9b9f171c, https://workflowhub.eu/workflows/1706?version=1 |
transcriptomics/clipseq |
|
beacon2 |
beacon2_csv2xlsx, beacon2_pxf2bff, beacon2_vcf2bff |
beacon2-ri-tools are part of the ELIXIR-CRG Beacon v2 Reference Implementation (B2RI). |
2023-08-11 |
https://github.com/EGA-archive/beacon2-ri-tools/tree/main |
2.0.0 |
beacon2-ri-tools |
2.0.0 |
Up-to-date |
Variant Analysis |
Service discovery, Database search, Genetic variation analysis |
Service discovery, Database search, Genetic variation analysis |
Genetic variation, Population genetics, Data security, Rare diseases |
Genetic variation, Population genetics, Data security, Rare diseases |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/beacon2 |
ga4gh_beacon |
GA4GH Beacon |
A global search engine for genetic mutations. |
|
0 |
3 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
9 |
9 |
52 |
52 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
52 |
52 |
9 |
9 |
|
|
|
beagle |
beagle |
Beagle is a program for phasing and imputing missing genotypes. |
2021-07-03 |
https://faculty.washington.edu/browning/beagle/beagle.html |
5.4_29Oct24.c8e |
beagle |
5.4_22Jul22.46e |
To update |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/beagle |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/beagle |
|
|
|
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
32 |
32 |
137 |
137 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
137 |
137 |
32 |
32 |
|
|
|
bedops_sortbed |
bedops-sort-bed |
BEDOPS: high-performance genomic feature operations |
2023-08-08 |
https://bedops.readthedocs.io/en/latest/ |
2.4.42 |
bedops |
2.4.42 |
Up-to-date |
Genomic Interval Operations |
|
|
|
|
iuc |
https://bedops.readthedocs.io/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bedops |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
62 |
62 |
184 |
184 |
85 |
85 |
273 |
273 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
457 |
457 |
147 |
147 |
|
|
|
bedtools |
bedtools_annotatebed, bedtools_bamtobed, bedtools_bed12tobed6, bedtools_bedtobam, bedtools_bedtoigv, bedtools_bedpetobam, bedtools_closestbed, bedtools_clusterbed, bedtools_complementbed, bedtools_coveragebed, bedtools_expandbed, bedtools_fisher, bedtools_flankbed, bedtools_genomecoveragebed, bedtools_getfastabed, bedtools_groupbybed, bedtools_intersectbed, bedtools_jaccard, bedtools_links, bedtools_makewindowsbed, bedtools_map, bedtools_maskfastabed, bedtools_mergebed, bedtools_multicovtbed, bedtools_multiintersectbed, bedtools_nucbed, bedtools_overlapbed, bedtools_randombed, bedtools_reldistbed, bedtools_shufflebed, bedtools_slopbed, bedtools_sortbed, bedtools_spacingbed, bedtools_subtractbed, bedtools_tagbed, bedtools_unionbedgraph, bedtools_windowbed |
bedtools is a powerful toolset for genome arithmetic |
2014-09-13 |
https://github.com/arq5x/bedtools2 |
2.31.1 |
bedtools |
2.31.1 |
Up-to-date |
Genomic Interval Operations, Text Manipulation |
Mapping |
Mapping |
Genomics |
Genomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bedtools |
bedtools |
BEDTools |
BEDTools is an extensive suite of utilities for comparing genomic features in BED format. |
|
37 |
37 |
37 |
37 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
37 |
37 |
37 |
0 |
0 |
0 |
0 |
0 |
37 |
0 |
0 |
0 |
0 |
37 |
37 |
37 |
0 |
4562 |
4901 |
943491 |
1002560 |
6821 |
8985 |
405712 |
674852 |
960 |
1000 |
87815 |
96143 |
268 |
268 |
8935 |
9359 |
1782914 |
1445953 |
15154 |
12611 |
https://dev.workflowhub.eu/workflows/1002?version=1, https://dev.workflowhub.eu/workflows/1012?version=1, https://dev.workflowhub.eu/workflows/1077?version=2, https://dev.workflowhub.eu/workflows/1106?version=2, https://dev.workflowhub.eu/workflows/1113?version=2, https://dev.workflowhub.eu/workflows/1153?version=2, https://dev.workflowhub.eu/workflows/1161?version=2, https://dev.workflowhub.eu/workflows/1169?version=2, https://dev.workflowhub.eu/workflows/1175?version=2, https://dev.workflowhub.eu/workflows/1187?version=2, https://dev.workflowhub.eu/workflows/1208?version=1, https://dev.workflowhub.eu/workflows/120?version=1, https://dev.workflowhub.eu/workflows/1285?version=2, https://dev.workflowhub.eu/workflows/1440?version=1, https://dev.workflowhub.eu/workflows/1441?version=1, https://dev.workflowhub.eu/workflows/194?version=2, https://dev.workflowhub.eu/workflows/574?version=1, https://usegalaxy.eu/published/workflow?id=020f877513f2d0d1, https://usegalaxy.eu/published/workflow?id=0229f3f3835c2d53, https://usegalaxy.eu/published/workflow?id=02655d0e4af0ee0d, https://usegalaxy.eu/published/workflow?id=06544e74f583fd05, https://usegalaxy.eu/published/workflow?id=069d99391a69baf4, https://usegalaxy.eu/published/workflow?id=079e2a968d8e6176, https://usegalaxy.eu/published/workflow?id=08e25b733cd796e6, https://usegalaxy.eu/published/workflow?id=0ae360bfbb3b2494, https://usegalaxy.eu/published/workflow?id=0c3ce9feb83f7920, https://usegalaxy.eu/published/workflow?id=0c619b25c1394a09, https://usegalaxy.eu/published/workflow?id=0c92c3c322c3effe, https://usegalaxy.eu/published/workflow?id=0cf3c2114ab65858, https://usegalaxy.eu/published/workflow?id=0d24e8ff7221c9dc, https://usegalaxy.eu/published/workflow?id=0e492839192d26e0, https://usegalaxy.eu/published/workflow?id=0fb12e3a127fc4be, https://usegalaxy.eu/published/workflow?id=1089e5c66dbcc1a3, https://usegalaxy.eu/published/workflow?id=111527fe542846af, https://usegalaxy.eu/published/workflow?id=117177b0c231dc55, https://usegalaxy.eu/published/workflow?id=133b299125ff9905, https://usegalaxy.eu/published/workflow?id=146cef3acb2eba75, https://usegalaxy.eu/published/workflow?id=153ba1581743d31f, https://usegalaxy.eu/published/workflow?id=16080c3c1488a8b5, https://usegalaxy.eu/published/workflow?id=19f139dc7d2727e6, https://usegalaxy.eu/published/workflow?id=1ac5745645634825, https://usegalaxy.eu/published/workflow?id=1c267e93aa8015e6, https://usegalaxy.eu/published/workflow?id=1ce406de61de8492, https://usegalaxy.eu/published/workflow?id=1dba8278fb2786fb, https://usegalaxy.eu/published/workflow?id=1ee43d90b69829e9, https://usegalaxy.eu/published/workflow?id=24ddd188da35b061, https://usegalaxy.eu/published/workflow?id=25aa944237d7fb82, https://usegalaxy.eu/published/workflow?id=272e9106e50c9fe6, https://usegalaxy.eu/published/workflow?id=2880a32a52d27743, https://usegalaxy.eu/published/workflow?id=288da0863f5032f3, https://usegalaxy.eu/published/workflow?id=2a13eb981d6ee36e, https://usegalaxy.eu/published/workflow?id=2a33d4fcb806e942, https://usegalaxy.eu/published/workflow?id=2b00b6498a2b4779, https://usegalaxy.eu/published/workflow?id=2c5cae1389c11881, https://usegalaxy.eu/published/workflow?id=2d9d4445a1871230, https://usegalaxy.eu/published/workflow?id=2e6561d8dadc9e17, https://usegalaxy.eu/published/workflow?id=2e93613c688ea52e, https://usegalaxy.eu/published/workflow?id=2f094f5e1f391529, https://usegalaxy.eu/published/workflow?id=2f51a82838722bec, https://usegalaxy.eu/published/workflow?id=3010ecad1a342331, https://usegalaxy.eu/published/workflow?id=309969a261189b5f, https://usegalaxy.eu/published/workflow?id=30e7dc81e323cbdb, https://usegalaxy.eu/published/workflow?id=31f8c7c46207432f, https://usegalaxy.eu/published/workflow?id=376119528377a3ae, https://usegalaxy.eu/published/workflow?id=38f12705279b5dfa, https://usegalaxy.eu/published/workflow?id=3a4ef58e24e7b1ef, https://usegalaxy.eu/published/workflow?id=3a7a0abd351f2cbb, https://usegalaxy.eu/published/workflow?id=3aaea772745ca295, https://usegalaxy.eu/published/workflow?id=3b57fc81001667b5, https://usegalaxy.eu/published/workflow?id=3b7c0b64033f38ac, https://usegalaxy.eu/published/workflow?id=3b8ef7905c902b27, https://usegalaxy.eu/published/workflow?id=3cf3dd9727b7ac92, https://usegalaxy.eu/published/workflow?id=3f61bd49caa49440, https://usegalaxy.eu/published/workflow?id=412617e754e76528, https://usegalaxy.eu/published/workflow?id=429ae28a178cd07c, https://usegalaxy.eu/published/workflow?id=437704898229dfb6, https://usegalaxy.eu/published/workflow?id=44c92c04f1d14631, https://usegalaxy.eu/published/workflow?id=454f3b736267aa2d, https://usegalaxy.eu/published/workflow?id=45c5e0a1e10edc54, https://usegalaxy.eu/published/workflow?id=45f63151bf4f1a49, https://usegalaxy.eu/published/workflow?id=461bd2ef88dd737c, https://usegalaxy.eu/published/workflow?id=475e4a5c3b1acda3, https://usegalaxy.eu/published/workflow?id=476db04368d5e90c, https://usegalaxy.eu/published/workflow?id=478190607a114390, https://usegalaxy.eu/published/workflow?id=48f63ef14a12f306, https://usegalaxy.eu/published/workflow?id=4949751217c0e211, https://usegalaxy.eu/published/workflow?id=498311923691884b, https://usegalaxy.eu/published/workflow?id=49d3cbacd6112a72, https://usegalaxy.eu/published/workflow?id=4b9459829b45ec67, https://usegalaxy.eu/published/workflow?id=4ca06bc64bf896a3, https://usegalaxy.eu/published/workflow?id=4cb25c0bb103f54f, https://usegalaxy.eu/published/workflow?id=4d97068a725c975c, https://usegalaxy.eu/published/workflow?id=4daa0c33d6d50379, https://usegalaxy.eu/published/workflow?id=4e57c5cf750afadd, https://usegalaxy.eu/published/workflow?id=5138874b208adb4b, https://usegalaxy.eu/published/workflow?id=51b0f5f95075cf7b, https://usegalaxy.eu/published/workflow?id=522500fac247be6f, https://usegalaxy.eu/published/workflow?id=5279af5c95ae4f7a, https://usegalaxy.eu/published/workflow?id=529f30e894beacc2, https://usegalaxy.eu/published/workflow?id=533819bcb5aa78c5, https://usegalaxy.eu/published/workflow?id=5385abe9c2589b69, https://usegalaxy.eu/published/workflow?id=5395e76fa828c343, https://usegalaxy.eu/published/workflow?id=54b91dd86f463391, https://usegalaxy.eu/published/workflow?id=55a9fc5d30392777, https://usegalaxy.eu/published/workflow?id=587e4d5ce25f48da, https://usegalaxy.eu/published/workflow?id=591ebf913450f49e, https://usegalaxy.eu/published/workflow?id=5b686090a45f803f, https://usegalaxy.eu/published/workflow?id=5cc732a6b4338bf5, https://usegalaxy.eu/published/workflow?id=5cef0f268d6ff4e0, https://usegalaxy.eu/published/workflow?id=5ded4002e684a02c, https://usegalaxy.eu/published/workflow?id=5e3c352233aa7a52, https://usegalaxy.eu/published/workflow?id=5ec0d6d108e02e1a, https://usegalaxy.eu/published/workflow?id=5f29105e842716db, https://usegalaxy.eu/published/workflow?id=6514e610c79df72c, https://usegalaxy.eu/published/workflow?id=652433160b04b232, https://usegalaxy.eu/published/workflow?id=6588229d0365657f, https://usegalaxy.eu/published/workflow?id=66f2a58637054c16, https://usegalaxy.eu/published/workflow?id=6bce1d419a179c50, https://usegalaxy.eu/published/workflow?id=6c0560c041bde8c6, https://usegalaxy.eu/published/workflow?id=6c91fe92ef069d64, https://usegalaxy.eu/published/workflow?id=6ebd09100fc98878, https://usegalaxy.eu/published/workflow?id=70cae21eafab7c03, https://usegalaxy.eu/published/workflow?id=70d3ebf31940bfb3, https://usegalaxy.eu/published/workflow?id=713e7c113a764ffb, https://usegalaxy.eu/published/workflow?id=71c4ec4805f83cd5, https://usegalaxy.eu/published/workflow?id=74e4a8f2edb25f1a, https://usegalaxy.eu/published/workflow?id=7582a48054c44d6e, https://usegalaxy.eu/published/workflow?id=792b24fc23bd3071, https://usegalaxy.eu/published/workflow?id=7b4a9aebb09b51ca, https://usegalaxy.eu/published/workflow?id=7b7d6a5c6c65d74b, https://usegalaxy.eu/published/workflow?id=7d44ea091d437edf, https://usegalaxy.eu/published/workflow?id=7e0ba4c14803448e, https://usegalaxy.eu/published/workflow?id=7e383fe34031a9d0, https://usegalaxy.eu/published/workflow?id=7e68cf8a67efa8e9, https://usegalaxy.eu/published/workflow?id=7ea91d562a02eb2f, https://usegalaxy.eu/published/workflow?id=7f76e43f19b27b22, https://usegalaxy.eu/published/workflow?id=8132c3b710fd6d48, https://usegalaxy.eu/published/workflow?id=82a60d94d699efbf, https://usegalaxy.eu/published/workflow?id=830eb4faff21eb0c, https://usegalaxy.eu/published/workflow?id=84236d781f7dd2ad, https://usegalaxy.eu/published/workflow?id=865f470be3c18b08, https://usegalaxy.eu/published/workflow?id=86e2e2faa2e0bd46, https://usegalaxy.eu/published/workflow?id=895b8f5736bb92bb, https://usegalaxy.eu/published/workflow?id=8b00eb89132be02f, https://usegalaxy.eu/published/workflow?id=8b7de28980c455ce, https://usegalaxy.eu/published/workflow?id=8c4331f1bac67aba, https://usegalaxy.eu/published/workflow?id=8f9dc5ba61a02815, https://usegalaxy.eu/published/workflow?id=8faf828e269ca54c, https://usegalaxy.eu/published/workflow?id=8fb156020285e049, https://usegalaxy.eu/published/workflow?id=8ff9d3ad20e87819, https://usegalaxy.eu/published/workflow?id=9019642fcce59ae2, https://usegalaxy.eu/published/workflow?id=93a7047396080fda, https://usegalaxy.eu/published/workflow?id=94b9287365ea4d0d, https://usegalaxy.eu/published/workflow?id=96158fee05bbca5f, https://usegalaxy.eu/published/workflow?id=96b75a7373a58aae, https://usegalaxy.eu/published/workflow?id=9953f2d313643f2b, https://usegalaxy.eu/published/workflow?id=99799eec4497f977, https://usegalaxy.eu/published/workflow?id=99c7ec2841af3a20, https://usegalaxy.eu/published/workflow?id=9ac74bd7d1000093, https://usegalaxy.eu/published/workflow?id=9b9e1e28f3683f92, https://usegalaxy.eu/published/workflow?id=9c24df68dc7d25a4, https://usegalaxy.eu/published/workflow?id=9dc6c073f9994265, https://usegalaxy.eu/published/workflow?id=9e4df2893767591a, https://usegalaxy.eu/published/workflow?id=9edd9ccffe6f4c59, https://usegalaxy.eu/published/workflow?id=a018307be3563f28, https://usegalaxy.eu/published/workflow?id=a06b1ed5cd25922f, https://usegalaxy.eu/published/workflow?id=a2daeb488bee0152, https://usegalaxy.eu/published/workflow?id=a37d1e0db16cfb67, https://usegalaxy.eu/published/workflow?id=a3da32b6b45da639, https://usegalaxy.eu/published/workflow?id=a53f78aa6866b811, https://usegalaxy.eu/published/workflow?id=a62f21701ff37788, https://usegalaxy.eu/published/workflow?id=a639ea0419de1078, https://usegalaxy.eu/published/workflow?id=a7ae5dbedf55c7d6, https://usegalaxy.eu/published/workflow?id=aada0111f835ce49, https://usegalaxy.eu/published/workflow?id=ad4b347f9b68e127, https://usegalaxy.eu/published/workflow?id=ae16643c04ad1216, https://usegalaxy.eu/published/workflow?id=af472984b3f3d65f, https://usegalaxy.eu/published/workflow?id=b287bb779cf686ef, https://usegalaxy.eu/published/workflow?id=b402aee2dc424569, https://usegalaxy.eu/published/workflow?id=b57c3522bdd7c2d5, https://usegalaxy.eu/published/workflow?id=b619339f4e1c6fdf, https://usegalaxy.eu/published/workflow?id=b8fc492025ad6ff0, https://usegalaxy.eu/published/workflow?id=bc8ccd13a07bd9ec, https://usegalaxy.eu/published/workflow?id=bf655ab3dc6fd76a, https://usegalaxy.eu/published/workflow?id=c0d1e965daf89006, https://usegalaxy.eu/published/workflow?id=c3eba26c5d7febff, https://usegalaxy.eu/published/workflow?id=c832ecfa83bcda14, https://usegalaxy.eu/published/workflow?id=c8bc4af6dd3b5d02, https://usegalaxy.eu/published/workflow?id=c8f94a2e838fc0f1, https://usegalaxy.eu/published/workflow?id=c98a14fcf5998159, https://usegalaxy.eu/published/workflow?id=c9aff55e39e195e3, https://usegalaxy.eu/published/workflow?id=ca6d971fc3a0f417, https://usegalaxy.eu/published/workflow?id=cab2aa791a814d55, https://usegalaxy.eu/published/workflow?id=cc2bc81352d2e2cd, https://usegalaxy.eu/published/workflow?id=cfe47f0c78ed5ec4, https://usegalaxy.eu/published/workflow?id=d12617d0df5f81d0, https://usegalaxy.eu/published/workflow?id=d3494c6124f820b2, https://usegalaxy.eu/published/workflow?id=d3a4e6cc1b4565e5, https://usegalaxy.eu/published/workflow?id=d3dfe7ba11508c72, https://usegalaxy.eu/published/workflow?id=d3edc3f0659a5e5b, https://usegalaxy.eu/published/workflow?id=d4a6fb334f5dd10e, https://usegalaxy.eu/published/workflow?id=d52ff93f4ffdd981, https://usegalaxy.eu/published/workflow?id=d5f5be2c96f9e797, https://usegalaxy.eu/published/workflow?id=d768c0e0df4d432e, https://usegalaxy.eu/published/workflow?id=d83280cd72ec0f33, https://usegalaxy.eu/published/workflow?id=db03a18167f26399, https://usegalaxy.eu/published/workflow?id=e3165c295bc243e4, https://usegalaxy.eu/published/workflow?id=e71a3c5ca3c31df1, https://usegalaxy.eu/published/workflow?id=ea0524e0b5eab8b9, https://usegalaxy.eu/published/workflow?id=ea485dbabc76488d, https://usegalaxy.eu/published/workflow?id=ea8bb8eefdb4ba7a, https://usegalaxy.eu/published/workflow?id=eb9a53e6062162fb, https://usegalaxy.eu/published/workflow?id=ecf48fa50af560a0, https://usegalaxy.eu/published/workflow?id=ef1d11b79a2e1727, https://usegalaxy.eu/published/workflow?id=efb58bba65393347, https://usegalaxy.eu/published/workflow?id=f14ebad1c3c20067, https://usegalaxy.eu/published/workflow?id=f5005e80d9ffa109, https://usegalaxy.eu/published/workflow?id=f560e06d23818b4c, https://usegalaxy.eu/published/workflow?id=f5798b2f5aeccf9f, https://usegalaxy.eu/published/workflow?id=f5be5bcf9b9f171c, https://usegalaxy.eu/published/workflow?id=f6a763951d815944, https://usegalaxy.eu/published/workflow?id=f6b55599db1ab056, https://usegalaxy.eu/published/workflow?id=f71ab313c4e7a25c, https://usegalaxy.eu/published/workflow?id=f9b705e53b6d6539, https://usegalaxy.eu/published/workflow?id=fa53b172def3fe75, https://usegalaxy.eu/published/workflow?id=fb806b88850f3427, https://usegalaxy.eu/published/workflow?id=fe0cf1fa5055d4e1, https://usegalaxy.eu/published/workflow?id=feeb1fa358ccf328, https://usegalaxy.eu/published/workflow?id=ff2fd4a4bb27d859, https://usegalaxy.fr/published/workflow?id=0df61a88d64de252, https://usegalaxy.fr/published/workflow?id=61235264d5d2f666, https://usegalaxy.fr/published/workflow?id=65ab28829a1f9803, https://usegalaxy.fr/published/workflow?id=80c1ec9c609e79ef, https://usegalaxy.fr/published/workflow?id=a3e9062133fdf7c2, https://usegalaxy.fr/published/workflow?id=bf8ffe72b7ce4570, https://usegalaxy.fr/published/workflow?id=e3c04a30258421aa, https://usegalaxy.org.au/published/workflow?id=08f53503bfb0f421, https://usegalaxy.org.au/published/workflow?id=0aa316f8c6cff444, https://usegalaxy.org.au/published/workflow?id=0b0957d7cbab16c0, https://usegalaxy.org.au/published/workflow?id=0dbb85f727302a72, https://usegalaxy.org.au/published/workflow?id=0f48060aa1bd41a5, https://usegalaxy.org.au/published/workflow?id=0f7406ada6706c91, https://usegalaxy.org.au/published/workflow?id=2789fb3590727342, https://usegalaxy.org.au/published/workflow?id=2955ea7be1cdda29, https://usegalaxy.org.au/published/workflow?id=2980172ed0226b59, https://usegalaxy.org.au/published/workflow?id=29f0c07c8a24b542, https://usegalaxy.org.au/published/workflow?id=2b0a986519532412, https://usegalaxy.org.au/published/workflow?id=2b71eb1dc2aa28a1, https://usegalaxy.org.au/published/workflow?id=2f520cb446adf726, https://usegalaxy.org.au/published/workflow?id=32d28f800adcea42, https://usegalaxy.org.au/published/workflow?id=3b6e9f03b088bf01, https://usegalaxy.org.au/published/workflow?id=3d5deed70ac9bde4, https://usegalaxy.org.au/published/workflow?id=3e7fcfd23872ad0d, https://usegalaxy.org.au/published/workflow?id=434127690544d0e9, https://usegalaxy.org.au/published/workflow?id=455e68f185fec41b, https://usegalaxy.org.au/published/workflow?id=4b681937a01df465, https://usegalaxy.org.au/published/workflow?id=4ea1049371de111c, https://usegalaxy.org.au/published/workflow?id=52056336f24eccf6, https://usegalaxy.org.au/published/workflow?id=57b558e1a76c09e1, https://usegalaxy.org.au/published/workflow?id=5cd7f1824db7a960, https://usegalaxy.org.au/published/workflow?id=5cd9b9338e75f254, https://usegalaxy.org.au/published/workflow?id=5cf5334877cc1297, https://usegalaxy.org.au/published/workflow?id=61a21c9928182ae4, https://usegalaxy.org.au/published/workflow?id=6795e545b0cafded, https://usegalaxy.org.au/published/workflow?id=6b3df543536faf8c, https://usegalaxy.org.au/published/workflow?id=6c1c11a81a2ab1b8, https://usegalaxy.org.au/published/workflow?id=6de8899c40a90b98, https://usegalaxy.org.au/published/workflow?id=6ec5728eec9c26d7, https://usegalaxy.org.au/published/workflow?id=7028436ef03171cc, https://usegalaxy.org.au/published/workflow?id=77b2fcf8c805ad5d, https://usegalaxy.org.au/published/workflow?id=79f4bdf9aab7c256, https://usegalaxy.org.au/published/workflow?id=7a97e8ccc332c1e8, https://usegalaxy.org.au/published/workflow?id=851552cc3e830253, https://usegalaxy.org.au/published/workflow?id=868775ef66d174a5, https://usegalaxy.org.au/published/workflow?id=86eb0ea9dc230f04, https://usegalaxy.org.au/published/workflow?id=932bad88f8dc8d33, https://usegalaxy.org.au/published/workflow?id=99821674db7682bb, https://usegalaxy.org.au/published/workflow?id=a1b97364f84022cf, https://usegalaxy.org.au/published/workflow?id=a484cdc9ff9d7e9e, https://usegalaxy.org.au/published/workflow?id=a5ccbb9aced9ac53, https://usegalaxy.org.au/published/workflow?id=a77ce877e786d44a, https://usegalaxy.org.au/published/workflow?id=a8ec08a1408cd6e7, https://usegalaxy.org.au/published/workflow?id=aa1d123c0a0929f3, https://usegalaxy.org.au/published/workflow?id=ae2a397837b232b1, https://usegalaxy.org.au/published/workflow?id=ae6a03240680712a, https://usegalaxy.org.au/published/workflow?id=b20f28151e46d3e0, https://usegalaxy.org.au/published/workflow?id=b53f82aaf32fbaa9, https://usegalaxy.org.au/published/workflow?id=b60922a253df6654, https://usegalaxy.org.au/published/workflow?id=b808cd1c0090b068, https://usegalaxy.org.au/published/workflow?id=b9e89401313a0cca, https://usegalaxy.org.au/published/workflow?id=ba7a9d4c857d26b7, https://usegalaxy.org.au/published/workflow?id=be35847680078c90, https://usegalaxy.org.au/published/workflow?id=bf999071343171b7, https://usegalaxy.org.au/published/workflow?id=c87c1f8c4eff415a, https://usegalaxy.org.au/published/workflow?id=cac0b8a09d59044b, https://usegalaxy.org.au/published/workflow?id=daff6854b5dfc6f1, https://usegalaxy.org.au/published/workflow?id=e07866576cc2f467, https://usegalaxy.org.au/published/workflow?id=e0b89b4e50d1a99b, https://usegalaxy.org.au/published/workflow?id=e154a9b605ea0886, https://usegalaxy.org.au/published/workflow?id=ea98be0f99aaceb9, https://usegalaxy.org.au/published/workflow?id=ebd1ee73906fdea0, https://usegalaxy.org.au/published/workflow?id=eda00feabdd21711, https://usegalaxy.org.au/published/workflow?id=eda40b58616a0fe4, https://usegalaxy.org.au/published/workflow?id=f65b54fcffaa11e5, https://usegalaxy.org.au/published/workflow?id=fa4fa7353dffef9a, https://usegalaxy.org.au/published/workflow?id=fdec6e2fcd5e2cf5, https://usegalaxy.org/published/workflow?id=00bc4e99626da1ba, https://usegalaxy.org/published/workflow?id=01585f1230125ba1, https://usegalaxy.org/published/workflow?id=019be65613876562, https://usegalaxy.org/published/workflow?id=02755c14619242da, https://usegalaxy.org/published/workflow?id=02c96a9c6bb708ac, https://usegalaxy.org/published/workflow?id=0392de36b6f55a8f, https://usegalaxy.org/published/workflow?id=049e6609da2b67c4, https://usegalaxy.org/published/workflow?id=05bf642dc7c58c40, https://usegalaxy.org/published/workflow?id=05ef809e2b11154c, https://usegalaxy.org/published/workflow?id=0660a00407fc16a1, https://usegalaxy.org/published/workflow?id=07739fbbd53755f6, https://usegalaxy.org/published/workflow?id=0775d8efad0dac10, https://usegalaxy.org/published/workflow?id=0843c6f15eae2f15, https://usegalaxy.org/published/workflow?id=08da44d18689dffc, https://usegalaxy.org/published/workflow?id=0a57740c68e85e21, https://usegalaxy.org/published/workflow?id=0b85fb10ed25d34e, https://usegalaxy.org/published/workflow?id=0bb15b58857c12b8, https://usegalaxy.org/published/workflow?id=0cbab8b7044d24f9, https://usegalaxy.org/published/workflow?id=0d8ec47a84766f96, https://usegalaxy.org/published/workflow?id=0dec1b9dbbb2f425, https://usegalaxy.org/published/workflow?id=0ebb1f5b6c9c8ab9, https://usegalaxy.org/published/workflow?id=100340be53c2851c, https://usegalaxy.org/published/workflow?id=100d0edb39f83ce7, https://usegalaxy.org/published/workflow?id=10d8d47f97afc999, https://usegalaxy.org/published/workflow?id=1250ec3ad6199cda, https://usegalaxy.org/published/workflow?id=1388fe5d8b50bc7c, https://usegalaxy.org/published/workflow?id=13a1fa4f6daf65cc, https://usegalaxy.org/published/workflow?id=13d9db3715f32b37, https://usegalaxy.org/published/workflow?id=150e288c2c2fe9e9, https://usegalaxy.org/published/workflow?id=155839aeb6340f54, https://usegalaxy.org/published/workflow?id=156e245e3d9f22ce, https://usegalaxy.org/published/workflow?id=15ea806eaf077617, https://usegalaxy.org/published/workflow?id=16910402667eec78, https://usegalaxy.org/published/workflow?id=170287dcfb9de475, https://usegalaxy.org/published/workflow?id=172ee5e5bef33d2e, https://usegalaxy.org/published/workflow?id=17a7ff756d37a437, https://usegalaxy.org/published/workflow?id=17f3d7e52777d2e8, https://usegalaxy.org/published/workflow?id=199d1df1df160ad1, https://usegalaxy.org/published/workflow?id=19ce6cf93298e268, https://usegalaxy.org/published/workflow?id=1c5a7196a442dd02, https://usegalaxy.org/published/workflow?id=1d8227ad3f3651a0, https://usegalaxy.org/published/workflow?id=1dd63a7b4c6f4c83, https://usegalaxy.org/published/workflow?id=1ddabc7d272dc702, https://usegalaxy.org/published/workflow?id=1deaf458d6d8695a, https://usegalaxy.org/published/workflow?id=1e1d7fac7e241768, https://usegalaxy.org/published/workflow?id=1ea88ca80a7f0038, https://usegalaxy.org/published/workflow?id=1f28e673ea725541, https://usegalaxy.org/published/workflow?id=1f98df1adba71b98, https://usegalaxy.org/published/workflow?id=1fdd58f4b7a6f643, https://usegalaxy.org/published/workflow?id=1ffc71df8eeed57e, https://usegalaxy.org/published/workflow?id=20023b26bb60f4df, https://usegalaxy.org/published/workflow?id=2049d38325423cfe, https://usegalaxy.org/published/workflow?id=21a047a4e068860f, https://usegalaxy.org/published/workflow?id=226b506d1fc30e96, https://usegalaxy.org/published/workflow?id=22f6b939e97d3b47, https://usegalaxy.org/published/workflow?id=23468eea382e6bb4, https://usegalaxy.org/published/workflow?id=23c4e801213eee50, https://usegalaxy.org/published/workflow?id=23eeee48217654d4, https://usegalaxy.org/published/workflow?id=2497103d279cd20e, https://usegalaxy.org/published/workflow?id=2524e026f069e885, https://usegalaxy.org/published/workflow?id=25b8b5af30042d76, https://usegalaxy.org/published/workflow?id=262ab42118016c41, https://usegalaxy.org/published/workflow?id=2644a8c0da3066c5, https://usegalaxy.org/published/workflow?id=26c4909f2f3df704, https://usegalaxy.org/published/workflow?id=27e174711b459ddf, https://usegalaxy.org/published/workflow?id=28abac549697f65a, https://usegalaxy.org/published/workflow?id=28b2550248a54d74, https://usegalaxy.org/published/workflow?id=28dbbfb3d480f4b1, https://usegalaxy.org/published/workflow?id=28ddea356ae57da1, https://usegalaxy.org/published/workflow?id=291829fed6fa7c44, https://usegalaxy.org/published/workflow?id=2957924403998f3a, https://usegalaxy.org/published/workflow?id=2af3de32c630e1b4, https://usegalaxy.org/published/workflow?id=2b5346b94358df88, https://usegalaxy.org/published/workflow?id=2b6245843e632c05, https://usegalaxy.org/published/workflow?id=2b820beaeb49dd64, https://usegalaxy.org/published/workflow?id=2cc5472ad7c039d1, https://usegalaxy.org/published/workflow?id=2ceff2cf26eae4cd, https://usegalaxy.org/published/workflow?id=2cfbf7d01161992c, https://usegalaxy.org/published/workflow?id=2d3063882d8239ff, https://usegalaxy.org/published/workflow?id=2d50f038984f2389, https://usegalaxy.org/published/workflow?id=2db2d27f0c627f44, https://usegalaxy.org/published/workflow?id=2dd4f04c7de7d173, https://usegalaxy.org/published/workflow?id=2e029537d2f4ab50, https://usegalaxy.org/published/workflow?id=2e65bc5f9d9f2a75, https://usegalaxy.org/published/workflow?id=305eafecadfa8815, https://usegalaxy.org/published/workflow?id=30a3744026ad86a7, https://usegalaxy.org/published/workflow?id=30ba39be60ec29be, https://usegalaxy.org/published/workflow?id=31acbfc6d3775846, https://usegalaxy.org/published/workflow?id=31cc891be77cbc6f, https://usegalaxy.org/published/workflow?id=31ed5a2bcc8da51a, https://usegalaxy.org/published/workflow?id=325783f21bc5fef6, https://usegalaxy.org/published/workflow?id=326ced2230a49c26, https://usegalaxy.org/published/workflow?id=32c769241ffce3d1, https://usegalaxy.org/published/workflow?id=336795e890851c21, https://usegalaxy.org/published/workflow?id=349f1bcdbc84045f, https://usegalaxy.org/published/workflow?id=357225c624e796b5, https://usegalaxy.org/published/workflow?id=3673a1ced343d0d0, https://usegalaxy.org/published/workflow?id=36bd1c3d32150b90, https://usegalaxy.org/published/workflow?id=36c885b0bc829da3, https://usegalaxy.org/published/workflow?id=375f5142c207a768, https://usegalaxy.org/published/workflow?id=39753cc73284963f, https://usegalaxy.org/published/workflow?id=39e79458c9ba581c, https://usegalaxy.org/published/workflow?id=3bed12ef73ba93bf, https://usegalaxy.org/published/workflow?id=3d0ba2f11f370e05, https://usegalaxy.org/published/workflow?id=3d7a9694bcee6db5, https://usegalaxy.org/published/workflow?id=3d805d7e0f34c727, https://usegalaxy.org/published/workflow?id=3db51822f04f4ff7, https://usegalaxy.org/published/workflow?id=3dc57709c4387ba7, https://usegalaxy.org/published/workflow?id=3e6c9ab5ef3250ae, https://usegalaxy.org/published/workflow?id=3ef08553982f6ffc, https://usegalaxy.org/published/workflow?id=3fdd7a7907233d58, https://usegalaxy.org/published/workflow?id=4054ceeba1a2fa69, https://usegalaxy.org/published/workflow?id=405dc14eb02ff234, https://usegalaxy.org/published/workflow?id=40645bd2f9b3b80c, https://usegalaxy.org/published/workflow?id=415c7152cb78e86f, https://usegalaxy.org/published/workflow?id=41bbf3cd893d400a, https://usegalaxy.org/published/workflow?id=424acfc2ded46f9f, https://usegalaxy.org/published/workflow?id=4357180d40560019, https://usegalaxy.org/published/workflow?id=43861b38cf6e927e, https://usegalaxy.org/published/workflow?id=438761debd08a9be, https://usegalaxy.org/published/workflow?id=446a9297e64ecb72, https://usegalaxy.org/published/workflow?id=449a419bcfd3c49e, https://usegalaxy.org/published/workflow?id=45f959d5bf505b15, https://usegalaxy.org/published/workflow?id=462a1176b48eef4a, https://usegalaxy.org/published/workflow?id=46894456a9bec601, https://usegalaxy.org/published/workflow?id=46e4acdc08eb3ea5, https://usegalaxy.org/published/workflow?id=46e718fb8eeb4d54, https://usegalaxy.org/published/workflow?id=472f73c3e81da1d9, https://usegalaxy.org/published/workflow?id=4790266996f12979, https://usegalaxy.org/published/workflow?id=4a01263e3d4b4edb, https://usegalaxy.org/published/workflow?id=4b92dfd20d48d479, https://usegalaxy.org/published/workflow?id=4ba61941f31f0215, https://usegalaxy.org/published/workflow?id=4d04cc04954f069b, https://usegalaxy.org/published/workflow?id=4d0607d3589e0775, https://usegalaxy.org/published/workflow?id=4d251ecda59c87c5, https://usegalaxy.org/published/workflow?id=4e3efbdd0c4c3e64, https://usegalaxy.org/published/workflow?id=4e8639cc4e9050d1, https://usegalaxy.org/published/workflow?id=4ed9f54caa932479, https://usegalaxy.org/published/workflow?id=4f459cfef6108e75, https://usegalaxy.org/published/workflow?id=4f6e8ff94ca4f164, https://usegalaxy.org/published/workflow?id=4ffdb2cf21759d26, https://usegalaxy.org/published/workflow?id=50206b10de958d03, https://usegalaxy.org/published/workflow?id=506acac8c6a58d5e, https://usegalaxy.org/published/workflow?id=507c817755b2410d, https://usegalaxy.org/published/workflow?id=51754f5039d2f244, https://usegalaxy.org/published/workflow?id=51d80a44d7d6fff7, https://usegalaxy.org/published/workflow?id=527adadecbab2eb6, https://usegalaxy.org/published/workflow?id=52b7524a3941885c, https://usegalaxy.org/published/workflow?id=52bde903adbbaf60, https://usegalaxy.org/published/workflow?id=52e2b69787ca7a17, https://usegalaxy.org/published/workflow?id=533b1d5d08f9943e, https://usegalaxy.org/published/workflow?id=5361db01e3b6cc0c, https://usegalaxy.org/published/workflow?id=53fdff74729a6780, https://usegalaxy.org/published/workflow?id=553125cd799e5982, https://usegalaxy.org/published/workflow?id=55c09bcdf3d7ae16, https://usegalaxy.org/published/workflow?id=56427a9b9c3848bf, https://usegalaxy.org/published/workflow?id=57726b39bbfb0c54, https://usegalaxy.org/published/workflow?id=57cfc1b5d9ea0d72, https://usegalaxy.org/published/workflow?id=5834e562fa403732, https://usegalaxy.org/published/workflow?id=58eeb06f911e8410, https://usegalaxy.org/published/workflow?id=59007e2bc9c807ee, https://usegalaxy.org/published/workflow?id=5951d11d3122abed, https://usegalaxy.org/published/workflow?id=59d34b4f0178120b, https://usegalaxy.org/published/workflow?id=5a16ff38eb80da82, https://usegalaxy.org/published/workflow?id=5a55d9bd9701b1ce, https://usegalaxy.org/published/workflow?id=5aa4b9131c31cb79, https://usegalaxy.org/published/workflow?id=5b540de61a70df64, https://usegalaxy.org/published/workflow?id=5bd6d7af64192b86, https://usegalaxy.org/published/workflow?id=5c85cd8c56b9f6ab, https://usegalaxy.org/published/workflow?id=5cad854edbbd3b69, https://usegalaxy.org/published/workflow?id=5ccc7d708e13de60, https://usegalaxy.org/published/workflow?id=5ce5b3061c6afd82, https://usegalaxy.org/published/workflow?id=5d1208bd49f97aeb, https://usegalaxy.org/published/workflow?id=5eb2e090df59d9a9, https://usegalaxy.org/published/workflow?id=5fa548beeb1411f2, https://usegalaxy.org/published/workflow?id=5ffeb9904cf5f0bf, https://usegalaxy.org/published/workflow?id=607d1683d6e26cef, https://usegalaxy.org/published/workflow?id=60b9910b7bb69f47, https://usegalaxy.org/published/workflow?id=60e999ef3dcff4ca, https://usegalaxy.org/published/workflow?id=61d03396ad7f25b9, https://usegalaxy.org/published/workflow?id=6229546fb8b0eba9, https://usegalaxy.org/published/workflow?id=626260e3c3ee5c08, https://usegalaxy.org/published/workflow?id=62c842e67fca5ab7, https://usegalaxy.org/published/workflow?id=6341c384ceaf47ed, https://usegalaxy.org/published/workflow?id=63b0ce2faec558d5, https://usegalaxy.org/published/workflow?id=64a329cf75834d6b, https://usegalaxy.org/published/workflow?id=658f6e4985b6e4a7, https://usegalaxy.org/published/workflow?id=65f3a5772ae05a7a, https://usegalaxy.org/published/workflow?id=672125473ec700bc, https://usegalaxy.org/published/workflow?id=672ca09dce4b0dc3, https://usegalaxy.org/published/workflow?id=676b88d0aac13fa5, https://usegalaxy.org/published/workflow?id=676fa9af68f6a763, https://usegalaxy.org/published/workflow?id=67992bf894a82587, https://usegalaxy.org/published/workflow?id=67e3457099db3ed2, https://usegalaxy.org/published/workflow?id=6822f413a3b09cb4, https://usegalaxy.org/published/workflow?id=68495cc8ec3d46df, https://usegalaxy.org/published/workflow?id=688a55b9ec2f5bf7, https://usegalaxy.org/published/workflow?id=68b995393b3142ec, https://usegalaxy.org/published/workflow?id=68be9cfc0c58cb44, https://usegalaxy.org/published/workflow?id=68d41ffbf92b2a8e, https://usegalaxy.org/published/workflow?id=692a2b0bb818336d, https://usegalaxy.org/published/workflow?id=695152887ca01bf0, https://usegalaxy.org/published/workflow?id=6960b8f6c98a9b9e, https://usegalaxy.org/published/workflow?id=6a08af55c086ec62, https://usegalaxy.org/published/workflow?id=6a174e7498434bd5, https://usegalaxy.org/published/workflow?id=6a2dace98986992a, https://usegalaxy.org/published/workflow?id=6ba03802169c0063, https://usegalaxy.org/published/workflow?id=6be2c7930c391b35, https://usegalaxy.org/published/workflow?id=6c68072bf72e6c4a, https://usegalaxy.org/published/workflow?id=6c95a357a3c1f399, https://usegalaxy.org/published/workflow?id=6d8f0be547b12528, https://usegalaxy.org/published/workflow?id=6db96a9c7e4b8d14, https://usegalaxy.org/published/workflow?id=6dcb43f86b9cd7dc, https://usegalaxy.org/published/workflow?id=6dd383fd86fea674, https://usegalaxy.org/published/workflow?id=6ea1bd64873b6c18, https://usegalaxy.org/published/workflow?id=6f2e4b4860413153, https://usegalaxy.org/published/workflow?id=6fa88ca75caba8e4, https://usegalaxy.org/published/workflow?id=7090bb14a7af15bd, https://usegalaxy.org/published/workflow?id=70e2f3e0d0be8e3b, https://usegalaxy.org/published/workflow?id=7185085cbe953cd9, https://usegalaxy.org/published/workflow?id=71f129d96b81851e, https://usegalaxy.org/published/workflow?id=7203eb3b663bca11, https://usegalaxy.org/published/workflow?id=73f5b1a6fd3c703f, https://usegalaxy.org/published/workflow?id=74049914e4a6c791, https://usegalaxy.org/published/workflow?id=75fffbce810acaf3, https://usegalaxy.org/published/workflow?id=76247065c01f01d1, https://usegalaxy.org/published/workflow?id=7643e66a9b4e9c11, https://usegalaxy.org/published/workflow?id=769ec5a187095b38, https://usegalaxy.org/published/workflow?id=7757cd56fa4d060c, https://usegalaxy.org/published/workflow?id=778a8867b0a6ea4f, https://usegalaxy.org/published/workflow?id=78249d353038002b, https://usegalaxy.org/published/workflow?id=789647a199e563fd, https://usegalaxy.org/published/workflow?id=78979ec454b98338, https://usegalaxy.org/published/workflow?id=79527e2b83fd5c64, https://usegalaxy.org/published/workflow?id=7965d84a9f71da93, https://usegalaxy.org/published/workflow?id=7a23e64dfa6957ce, https://usegalaxy.org/published/workflow?id=7a2b4675c758f34e, https://usegalaxy.org/published/workflow?id=7a4d834e794407d9, https://usegalaxy.org/published/workflow?id=7b20a62d69d53efc, https://usegalaxy.org/published/workflow?id=7b8ee08ba291d231, https://usegalaxy.org/published/workflow?id=7b9e17cb1d72d7e4, https://usegalaxy.org/published/workflow?id=7c4a2339b17a8930, https://usegalaxy.org/published/workflow?id=7d110e1fca0ac973, https://usegalaxy.org/published/workflow?id=7decdde67868ed0f, https://usegalaxy.org/published/workflow?id=7e56bee496344ddc, https://usegalaxy.org/published/workflow?id=7f02a9ab182a8f94, https://usegalaxy.org/published/workflow?id=7fb4dae5daab0522, https://usegalaxy.org/published/workflow?id=803aec95399f7073, https://usegalaxy.org/published/workflow?id=8041fad92ef6e904, https://usegalaxy.org/published/workflow?id=8095deba606ebd5e, https://usegalaxy.org/published/workflow?id=8151be18aab3a3c6, https://usegalaxy.org/published/workflow?id=8182055f5ef561f3, https://usegalaxy.org/published/workflow?id=840a7be198dc8ae4, https://usegalaxy.org/published/workflow?id=842c09b49c456429, https://usegalaxy.org/published/workflow?id=85bc37a59a6ea443, https://usegalaxy.org/published/workflow?id=85e2a1d6b1d4e3d7, https://usegalaxy.org/published/workflow?id=8689dc9eac10c871, https://usegalaxy.org/published/workflow?id=868acaf49d0743ec, https://usegalaxy.org/published/workflow?id=86b802ea75d18160, https://usegalaxy.org/published/workflow?id=870f4988a5cc815e, https://usegalaxy.org/published/workflow?id=87c1bdc00b975377, https://usegalaxy.org/published/workflow?id=87ebf1b5956a61b5, https://usegalaxy.org/published/workflow?id=88327cb2e0fe3c25, https://usegalaxy.org/published/workflow?id=884ee0057bde9135, https://usegalaxy.org/published/workflow?id=885f0e66fa6b8790, https://usegalaxy.org/published/workflow?id=88774b222152b3cd, https://usegalaxy.org/published/workflow?id=889b394b38b259eb, https://usegalaxy.org/published/workflow?id=88e10493f7e6b9d5, https://usegalaxy.org/published/workflow?id=89660361d4121fa8, https://usegalaxy.org/published/workflow?id=8a15bda6ce7a63ec, https://usegalaxy.org/published/workflow?id=8a215695e7b57cf5, https://usegalaxy.org/published/workflow?id=8ae311282a0d27a1, https://usegalaxy.org/published/workflow?id=8b08a05c5926dd0f, https://usegalaxy.org/published/workflow?id=8b133c1d302c8681, https://usegalaxy.org/published/workflow?id=8bf608c6fd0dabd0, https://usegalaxy.org/published/workflow?id=8c1516493c55bf7d, https://usegalaxy.org/published/workflow?id=8c4fcd4bd9d5a72d, https://usegalaxy.org/published/workflow?id=8caea3788657235d, https://usegalaxy.org/published/workflow?id=8cf06b14037a8d5a, https://usegalaxy.org/published/workflow?id=8db9ccf14567d9ba, https://usegalaxy.org/published/workflow?id=8e2b2a40831dfb08, https://usegalaxy.org/published/workflow?id=903e35b62946ed76, https://usegalaxy.org/published/workflow?id=9057e2e000a7ef02, https://usegalaxy.org/published/workflow?id=906cc2c2d4e24483, https://usegalaxy.org/published/workflow?id=907aaf55487ddf43, https://usegalaxy.org/published/workflow?id=914ec4d8fc0022e4, https://usegalaxy.org/published/workflow?id=916a116b69ac5eeb, https://usegalaxy.org/published/workflow?id=91806144e90637e8, https://usegalaxy.org/published/workflow?id=918863756ce93725, https://usegalaxy.org/published/workflow?id=9192807702bc3de2, https://usegalaxy.org/published/workflow?id=91ed290805f590de, https://usegalaxy.org/published/workflow?id=9255c0c9017b139f, https://usegalaxy.org/published/workflow?id=931dd3e6b1fae4f5, https://usegalaxy.org/published/workflow?id=9373050c3ce80d56, https://usegalaxy.org/published/workflow?id=93cb976bd4ae546e, https://usegalaxy.org/published/workflow?id=93e69c7e7a857ca3, https://usegalaxy.org/published/workflow?id=953d9cbe05e632a8, https://usegalaxy.org/published/workflow?id=958b64b05011d8c0, https://usegalaxy.org/published/workflow?id=95db417c58c586fa, https://usegalaxy.org/published/workflow?id=962f784745c1b740, https://usegalaxy.org/published/workflow?id=96ae2544e22d34c5, https://usegalaxy.org/published/workflow?id=9763787d7b102f39, https://usegalaxy.org/published/workflow?id=97c20a819394e381, https://usegalaxy.org/published/workflow?id=97dcd7285ebd5817, https://usegalaxy.org/published/workflow?id=98a4b90f7fc2bfce, https://usegalaxy.org/published/workflow?id=99bc7ba3faa7ed55, https://usegalaxy.org/published/workflow?id=99ee567c092fb34c, https://usegalaxy.org/published/workflow?id=9b384b774485b2f2, https://usegalaxy.org/published/workflow?id=9bea2e9f45f07f32, https://usegalaxy.org/published/workflow?id=9d626a89800a96ca, https://usegalaxy.org/published/workflow?id=9da91815a6588268, https://usegalaxy.org/published/workflow?id=9db607d8d1cdcc25, https://usegalaxy.org/published/workflow?id=9e9a027e0c294a79, https://usegalaxy.org/published/workflow?id=9eb29b71d7effefc, https://usegalaxy.org/published/workflow?id=9ecfaa613a112d78, https://usegalaxy.org/published/workflow?id=9f4c4038d1c519e2, https://usegalaxy.org/published/workflow?id=9f5f2e309a3ea50c, https://usegalaxy.org/published/workflow?id=a124d41da896779c, https://usegalaxy.org/published/workflow?id=a164d857439a126f, https://usegalaxy.org/published/workflow?id=a2046dd883227b49, https://usegalaxy.org/published/workflow?id=a2b4a868fa9795d1, https://usegalaxy.org/published/workflow?id=a3ff7dbfadbd96e2, https://usegalaxy.org/published/workflow?id=a4a56efb37d845bf, https://usegalaxy.org/published/workflow?id=a4a6d6846c1692f9, https://usegalaxy.org/published/workflow?id=a4f7af1e2cd826c3, https://usegalaxy.org/published/workflow?id=a5bdab0b219b3797, https://usegalaxy.org/published/workflow?id=a89008fccc1f1d17, https://usegalaxy.org/published/workflow?id=a89eaad3f42ec41c, https://usegalaxy.org/published/workflow?id=a986e4991fc61c92, https://usegalaxy.org/published/workflow?id=a98a3ac1a41752bc, https://usegalaxy.org/published/workflow?id=a99a938953be5fd6, https://usegalaxy.org/published/workflow?id=aa9def6ec8f13b3a, https://usegalaxy.org/published/workflow?id=ab0ffa36361293da, https://usegalaxy.org/published/workflow?id=ab490af27c9ccc80, https://usegalaxy.org/published/workflow?id=ab6e4277fc825c5d, https://usegalaxy.org/published/workflow?id=ab8590a0ee1b9951, https://usegalaxy.org/published/workflow?id=ace738014a7278b0, https://usegalaxy.org/published/workflow?id=adb86df9061dca2b, https://usegalaxy.org/published/workflow?id=adca3f2ca63730fe, https://usegalaxy.org/published/workflow?id=adf531bc12766c9b, https://usegalaxy.org/published/workflow?id=ae83fb92e697e009, https://usegalaxy.org/published/workflow?id=af5acb5dd7bfac56, https://usegalaxy.org/published/workflow?id=af5d714396856e9a, https://usegalaxy.org/published/workflow?id=af71519c81429287, https://usegalaxy.org/published/workflow?id=afa89bb0e8966753, https://usegalaxy.org/published/workflow?id=afd7633a34d68704, https://usegalaxy.org/published/workflow?id=affdc1bf42475cc9, https://usegalaxy.org/published/workflow?id=b0b6dfa166b0d873, https://usegalaxy.org/published/workflow?id=b1004c9974ceb785, https://usegalaxy.org/published/workflow?id=b16a1642e2cd54a2, https://usegalaxy.org/published/workflow?id=b19a9163c26f1270, https://usegalaxy.org/published/workflow?id=b1dc9cf054a63be5, https://usegalaxy.org/published/workflow?id=b232caf4a1e1b7ee, https://usegalaxy.org/published/workflow?id=b33ad2032a655706, https://usegalaxy.org/published/workflow?id=b3d83022d4944404, https://usegalaxy.org/published/workflow?id=b3f2647ad8eeb620, https://usegalaxy.org/published/workflow?id=b461ac6f18e0c9cf, https://usegalaxy.org/published/workflow?id=b4d57f2aa0678ad2, https://usegalaxy.org/published/workflow?id=b50f2446d5e60334, https://usegalaxy.org/published/workflow?id=b5e8f4a0ff226921, https://usegalaxy.org/published/workflow?id=b63d1e1024cc3295, https://usegalaxy.org/published/workflow?id=b6d90898e2db6aba, https://usegalaxy.org/published/workflow?id=b78a75ae89ae4c79, https://usegalaxy.org/published/workflow?id=b7b69aaee5202144, https://usegalaxy.org/published/workflow?id=b7ec8d79dc563a93, https://usegalaxy.org/published/workflow?id=b8804291f2754fc8, https://usegalaxy.org/published/workflow?id=b8ed069eea7879e7, https://usegalaxy.org/published/workflow?id=b93a475af82a3d36, https://usegalaxy.org/published/workflow?id=b9e6ddbc79904844, https://usegalaxy.org/published/workflow?id=ba405b449e27ba37, https://usegalaxy.org/published/workflow?id=ba68fd4b4348e63c, https://usegalaxy.org/published/workflow?id=bb16936081b820f6, https://usegalaxy.org/published/workflow?id=bb25ac3ba4863424, https://usegalaxy.org/published/workflow?id=bbe958a8c0bf4955, https://usegalaxy.org/published/workflow?id=bcb798fb718968ce, https://usegalaxy.org/published/workflow?id=bd00c8a7a3b7e5be, https://usegalaxy.org/published/workflow?id=bd184804cfddafc4, https://usegalaxy.org/published/workflow?id=bd3bed78eb99e294, https://usegalaxy.org/published/workflow?id=be46c5bb8c06a470, https://usegalaxy.org/published/workflow?id=bf1af666d4ea21e4, https://usegalaxy.org/published/workflow?id=bfd3ba54576d2d81, https://usegalaxy.org/published/workflow?id=bfee1238c70627cb, https://usegalaxy.org/published/workflow?id=c0746df296544a3a, https://usegalaxy.org/published/workflow?id=c07476a937b4e52e, https://usegalaxy.org/published/workflow?id=c11dfc3314e33b33, https://usegalaxy.org/published/workflow?id=c1339c998a55431c, https://usegalaxy.org/published/workflow?id=c156e67ad1ae4a97, https://usegalaxy.org/published/workflow?id=c1ec12905944ca7b, https://usegalaxy.org/published/workflow?id=c20a68563e80d401, https://usegalaxy.org/published/workflow?id=c2898d28a3b380d6, https://usegalaxy.org/published/workflow?id=c332d1bbd62e139d, https://usegalaxy.org/published/workflow?id=c478d8de43a3f30f, https://usegalaxy.org/published/workflow?id=c4aaf11b0cb6e5ac, https://usegalaxy.org/published/workflow?id=c57c820557ae9b55, https://usegalaxy.org/published/workflow?id=c5f4b7b2463f338b, https://usegalaxy.org/published/workflow?id=c66e2738f37a8c16, https://usegalaxy.org/published/workflow?id=c712b85a55da2a2d, https://usegalaxy.org/published/workflow?id=c74e3a24751d9924, https://usegalaxy.org/published/workflow?id=c75acc1ab44c121f, https://usegalaxy.org/published/workflow?id=c7b2d2ccc4b0dec5, https://usegalaxy.org/published/workflow?id=c81833a367445f98, https://usegalaxy.org/published/workflow?id=c81ae10f59b3f600, https://usegalaxy.org/published/workflow?id=c9474fcce2a21188, https://usegalaxy.org/published/workflow?id=c95fc8692a886a59, https://usegalaxy.org/published/workflow?id=c9e442a395fc1a58, https://usegalaxy.org/published/workflow?id=ca36eebd59575df3, https://usegalaxy.org/published/workflow?id=cb029d0205155150, https://usegalaxy.org/published/workflow?id=cbbd7e95041d9429, https://usegalaxy.org/published/workflow?id=cd4d88429f096fbc, https://usegalaxy.org/published/workflow?id=cd5f803c80875b9c, https://usegalaxy.org/published/workflow?id=cd824d8631d6a55e, https://usegalaxy.org/published/workflow?id=cdea4f88ccbd155f, https://usegalaxy.org/published/workflow?id=ced446bf2428497b, https://usegalaxy.org/published/workflow?id=cf3320614654adfe, https://usegalaxy.org/published/workflow?id=cf9069dd5d24d58f, https://usegalaxy.org/published/workflow?id=cfa7c3d7e69e91d7, https://usegalaxy.org/published/workflow?id=cfd37af9d6e4cbdb, https://usegalaxy.org/published/workflow?id=d00ac64dcd07f91a, https://usegalaxy.org/published/workflow?id=d02b4d7483936b73, https://usegalaxy.org/published/workflow?id=d0981820adf9c7d2, https://usegalaxy.org/published/workflow?id=d136d24e4c96962a, https://usegalaxy.org/published/workflow?id=d196c3bde666eccb, https://usegalaxy.org/published/workflow?id=d2759906e4124964, https://usegalaxy.org/published/workflow?id=d2dec03b33af1b2f, https://usegalaxy.org/published/workflow?id=d2edc47cc7963885, https://usegalaxy.org/published/workflow?id=d314df52f2f51502, https://usegalaxy.org/published/workflow?id=d341660f3d1ce8bf, https://usegalaxy.org/published/workflow?id=d4029ce1344e874a, https://usegalaxy.org/published/workflow?id=d50b2df115706adb, https://usegalaxy.org/published/workflow?id=d6cf3be79a4b7db4, https://usegalaxy.org/published/workflow?id=d7049965ca7d8ea9, https://usegalaxy.org/published/workflow?id=d768a4a06d3b1a90, https://usegalaxy.org/published/workflow?id=d7e14ff032a6ac4f, https://usegalaxy.org/published/workflow?id=d85f8ef78040fbb1, https://usegalaxy.org/published/workflow?id=d903c7215a88c79f, https://usegalaxy.org/published/workflow?id=d9840d6ecf2b4d2f, https://usegalaxy.org/published/workflow?id=dbc650d226e89013, https://usegalaxy.org/published/workflow?id=dbcf0fbf5329b3fb, https://usegalaxy.org/published/workflow?id=dbdc894ad54675a8, https://usegalaxy.org/published/workflow?id=dcf658333596d76a, https://usegalaxy.org/published/workflow?id=ddf222b797082436, https://usegalaxy.org/published/workflow?id=de2861cdbd4e29ce, https://usegalaxy.org/published/workflow?id=de29cd965a2e93d3, https://usegalaxy.org/published/workflow?id=deea71ccac30c7ea, https://usegalaxy.org/published/workflow?id=df24d76ebf13e3c1, https://usegalaxy.org/published/workflow?id=dff3cf6921b3d4d6, https://usegalaxy.org/published/workflow?id=e0ec503626fa0d58, https://usegalaxy.org/published/workflow?id=e2c77aeabb8053b4, https://usegalaxy.org/published/workflow?id=e2d7b8a4e6c422a3, https://usegalaxy.org/published/workflow?id=e31abcc04c5c69bc, https://usegalaxy.org/published/workflow?id=e325b97b81b10edb, https://usegalaxy.org/published/workflow?id=e42a07b777c9f9dc, https://usegalaxy.org/published/workflow?id=e483f5a30a683925, https://usegalaxy.org/published/workflow?id=e500078649dd026c, https://usegalaxy.org/published/workflow?id=e53b695ff681b675, https://usegalaxy.org/published/workflow?id=e57d595b0cde1614, https://usegalaxy.org/published/workflow?id=e58a87508a337b91, https://usegalaxy.org/published/workflow?id=e5f79f576548f7c5, https://usegalaxy.org/published/workflow?id=e67db5dc8eab60f3, https://usegalaxy.org/published/workflow?id=e6a6223ef5ef85a7, https://usegalaxy.org/published/workflow?id=e6b803c1232cd08e, https://usegalaxy.org/published/workflow?id=e6f57346a02be07f, https://usegalaxy.org/published/workflow?id=e817b5b275b4952f, https://usegalaxy.org/published/workflow?id=e899acc664c8b808, https://usegalaxy.org/published/workflow?id=e91350e532c9e554, https://usegalaxy.org/published/workflow?id=e9927c058ec0661f, https://usegalaxy.org/published/workflow?id=e9aaa56af9d230d6, https://usegalaxy.org/published/workflow?id=e9ffad95baa43478, https://usegalaxy.org/published/workflow?id=ea4c2defce2f5258, https://usegalaxy.org/published/workflow?id=eab7347464872b4c, https://usegalaxy.org/published/workflow?id=eae5ae951abe6761, https://usegalaxy.org/published/workflow?id=eafe4aa62a600e1d, https://usegalaxy.org/published/workflow?id=eb4b32fcf4a9f64a, https://usegalaxy.org/published/workflow?id=ebbcdc389aad0eb8, https://usegalaxy.org/published/workflow?id=ebc9aad36017b567, https://usegalaxy.org/published/workflow?id=ebe7f93204402a5a, https://usegalaxy.org/published/workflow?id=ec3cc032a90c44f1, https://usegalaxy.org/published/workflow?id=ec3d8d5d1531f92e, https://usegalaxy.org/published/workflow?id=ec96e3bf30d5f771, https://usegalaxy.org/published/workflow?id=eccaebba0605d876, https://usegalaxy.org/published/workflow?id=edb299ecbf147618, https://usegalaxy.org/published/workflow?id=edf9be785ab9eb65, https://usegalaxy.org/published/workflow?id=ee27581327d147da, https://usegalaxy.org/published/workflow?id=ee3b8d7ba29da11c, https://usegalaxy.org/published/workflow?id=ef44d02a79bd28bf, https://usegalaxy.org/published/workflow?id=ef6036efe8a03a12, https://usegalaxy.org/published/workflow?id=f062eda543541ba8, https://usegalaxy.org/published/workflow?id=f09033420c6267ab, https://usegalaxy.org/published/workflow?id=f0ee8bcd7c8fadca, https://usegalaxy.org/published/workflow?id=f0feca8af9aeddba, https://usegalaxy.org/published/workflow?id=f14121a9358dffdb, https://usegalaxy.org/published/workflow?id=f202add6857fabbe, https://usegalaxy.org/published/workflow?id=f23e5f333987a89f, https://usegalaxy.org/published/workflow?id=f29d1bcfeaacba04, https://usegalaxy.org/published/workflow?id=f2f633d2b02b6050, https://usegalaxy.org/published/workflow?id=f302d673420a9bdd, https://usegalaxy.org/published/workflow?id=f3b417763495221b, https://usegalaxy.org/published/workflow?id=f3c8093c5b8a7233, https://usegalaxy.org/published/workflow?id=f4ed1c9434ed0445, https://usegalaxy.org/published/workflow?id=f5200b7bcceed5d6, https://usegalaxy.org/published/workflow?id=f58aa85ceaa19534, https://usegalaxy.org/published/workflow?id=f5bd2da36ab0a870, https://usegalaxy.org/published/workflow?id=f60818a405f1bbbd, https://usegalaxy.org/published/workflow?id=f63f7a0a33a83841, https://usegalaxy.org/published/workflow?id=f765c8aa4bc3176c, https://usegalaxy.org/published/workflow?id=f794b4b9bb990c80, https://usegalaxy.org/published/workflow?id=f7a3567ba6b57c9c, https://usegalaxy.org/published/workflow?id=f88f186bc851e954, https://usegalaxy.org/published/workflow?id=f8d85cda81baa77d, https://usegalaxy.org/published/workflow?id=f8ed1ae9d501bb87, https://usegalaxy.org/published/workflow?id=f9d546aae406cf15, https://usegalaxy.org/published/workflow?id=fa226c044fa026ef, https://usegalaxy.org/published/workflow?id=fa36d9b50e956917, https://usegalaxy.org/published/workflow?id=fa89d2d0edabe803, https://usegalaxy.org/published/workflow?id=fae519dcba6bfc72, https://usegalaxy.org/published/workflow?id=fb98ef955b3dbd4b, https://usegalaxy.org/published/workflow?id=fc130cb411aa7d06, https://usegalaxy.org/published/workflow?id=fcbe12fc4eaae12e, https://usegalaxy.org/published/workflow?id=fce1837144d3a86e, https://usegalaxy.org/published/workflow?id=fda29ba2b6c98f8b, https://usegalaxy.org/published/workflow?id=fe4c2791508c56ab, https://usegalaxy.org/published/workflow?id=ffd718437128bce2, https://usegalaxy.org/published/workflow?id=fff1a5c7475b3eeb, https://workflowhub.eu/workflows/1054?version=1, https://workflowhub.eu/workflows/1060?version=1, https://workflowhub.eu/workflows/1103?version=3, https://workflowhub.eu/workflows/1104?version=2, https://workflowhub.eu/workflows/111?version=5, https://workflowhub.eu/workflows/1270?version=2, https://workflowhub.eu/workflows/1273?version=2, https://workflowhub.eu/workflows/138?version=9, https://workflowhub.eu/workflows/1487?version=2, https://workflowhub.eu/workflows/1493?version=1, https://workflowhub.eu/workflows/1506?version=1, https://workflowhub.eu/workflows/1562?version=1, https://workflowhub.eu/workflows/1568?version=1, https://workflowhub.eu/workflows/1606?version=1, https://workflowhub.eu/workflows/1607?version=1, https://workflowhub.eu/workflows/1615?version=1, https://workflowhub.eu/workflows/1638?version=1, https://workflowhub.eu/workflows/1706?version=1, https://workflowhub.eu/workflows/356?version=1, https://workflowhub.eu/workflows/395?version=15, https://workflowhub.eu/workflows/399?version=19, https://workflowhub.eu/workflows/400?version=12, https://workflowhub.eu/workflows/401?version=13, https://workflowhub.eu/workflows/561?version=11, https://workflowhub.eu/workflows/878?version=1 |
assembly/ecoli_comparison, assembly/vgp_genome_assembly, epigenetics/atac-seq, epigenetics/cut_and_run, epigenetics/formation_of_super-structures_on_xi, epigenetics/tal1-binding-site-identification, genome-annotation/repeatmasker, introduction/galaxy-intro-101, microbiome/pathogen-detection-from-nanopore-foodborne-data, single-cell/scatac-preprocessing-tenx, transcriptomics/clipseq |
|
bellavista |
bellavista_prepare |
Open-Source Visualization for Imaging-Based Spatial Transcriptomics |
2025-05-02 |
https://github.com/pkosurilab/BellaVista |
0.0.2 |
|
|
To update |
Single Cell, Spatial Omics, Transcriptomics, Imaging |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/bellavista |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bellavista |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
bellerophon |
bellerophon |
Filter mapped reads where the mapping spans a junction, retaining the 5-prime read. |
2021-05-28 |
https://github.com/davebx/bellerophon |
1.0 |
bellerophon |
1.0 |
Up-to-date |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/davebx/bellerophon |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bellerophon |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
293 |
293 |
1850 |
1850 |
86 |
86 |
1278 |
1278 |
31 |
31 |
671 |
671 |
0 |
0 |
0 |
0 |
3799 |
3799 |
410 |
410 |
https://dev.workflowhub.eu/workflows/1002?version=1, https://dev.workflowhub.eu/workflows/1127?version=3, https://dev.workflowhub.eu/workflows/1187?version=2, https://usegalaxy.eu/published/workflow?id=069d99391a69baf4, https://usegalaxy.eu/published/workflow?id=0c3ce9feb83f7920, https://usegalaxy.eu/published/workflow?id=0cf3c2114ab65858, https://usegalaxy.eu/published/workflow?id=3010ecad1a342331, https://usegalaxy.eu/published/workflow?id=31f8c7c46207432f, https://usegalaxy.eu/published/workflow?id=3b57fc81001667b5, https://usegalaxy.eu/published/workflow?id=4949751217c0e211, https://usegalaxy.eu/published/workflow?id=652433160b04b232, https://usegalaxy.eu/published/workflow?id=792b24fc23bd3071, https://usegalaxy.eu/published/workflow?id=a37d1e0db16cfb67, https://usegalaxy.eu/published/workflow?id=a53f78aa6866b811, https://usegalaxy.eu/published/workflow?id=b287bb779cf686ef, https://usegalaxy.eu/published/workflow?id=bc32937d505135ab, https://usegalaxy.eu/published/workflow?id=bc8ccd13a07bd9ec, https://usegalaxy.eu/published/workflow?id=c8f94a2e838fc0f1, https://usegalaxy.eu/published/workflow?id=feeb1fa358ccf328, https://usegalaxy.org.au/published/workflow?id=0aa316f8c6cff444, https://usegalaxy.org.au/published/workflow?id=0dbb85f727302a72, https://usegalaxy.org.au/published/workflow?id=29f0c07c8a24b542, https://usegalaxy.org.au/published/workflow?id=434127690544d0e9, https://usegalaxy.org.au/published/workflow?id=455e68f185fec41b, https://usegalaxy.org.au/published/workflow?id=6c1c11a81a2ab1b8, https://usegalaxy.org.au/published/workflow?id=6ec5728eec9c26d7, https://usegalaxy.org.au/published/workflow?id=7028436ef03171cc, https://usegalaxy.org.au/published/workflow?id=77b2fcf8c805ad5d, https://usegalaxy.org.au/published/workflow?id=7a97e8ccc332c1e8, https://usegalaxy.org.au/published/workflow?id=86eb0ea9dc230f04, https://usegalaxy.org.au/published/workflow?id=ae6a03240680712a, https://usegalaxy.org.au/published/workflow?id=b9e89401313a0cca, https://usegalaxy.org.au/published/workflow?id=be35847680078c90, https://usegalaxy.org.au/published/workflow?id=cac0b8a09d59044b, https://usegalaxy.org.au/published/workflow?id=e07866576cc2f467, https://usegalaxy.org.au/published/workflow?id=fdec6e2fcd5e2cf5, https://usegalaxy.org/published/workflow?id=155839aeb6340f54, https://usegalaxy.org/published/workflow?id=28dbbfb3d480f4b1, https://usegalaxy.org/published/workflow?id=28ddea356ae57da1, https://usegalaxy.org/published/workflow?id=3d805d7e0f34c727, https://usegalaxy.org/published/workflow?id=3db51822f04f4ff7, https://usegalaxy.org/published/workflow?id=6341c384ceaf47ed, https://usegalaxy.org/published/workflow?id=88327cb2e0fe3c25, https://usegalaxy.org/published/workflow?id=903e35b62946ed76, https://usegalaxy.org/published/workflow?id=9f4c4038d1c519e2, https://usegalaxy.org/published/workflow?id=a4a6d6846c1692f9, https://usegalaxy.org/published/workflow?id=afa89bb0e8966753, https://usegalaxy.org/published/workflow?id=f09033420c6267ab, https://workflowhub.eu/workflows/1054?version=1, https://workflowhub.eu/workflows/1607?version=1, https://workflowhub.eu/workflows/1641?version=1, https://workflowhub.eu/workflows/608?version=1, https://workflowhub.eu/workflows/702?version=1 |
assembly/ERGA-post-assembly-QC, assembly/vgp_genome_assembly |
|
berokka |
berokka |
Berokka is used to trim, circularise, orient & filter long read bacterial genome assemblies. |
2019-03-08 |
https://github.com/tseemann/berokka |
0.2.3 |
berokka |
0.2.3 |
Up-to-date |
Fasta Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/blob/master/tools/berokka |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/berokka |
|
|
|
|
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
73 |
73 |
1024 |
1024 |
0 |
0 |
0 |
0 |
1024 |
1024 |
73 |
73 |
|
|
|
bigscape |
bigscape |
Construct sequence similarity networks of BGCs and groups them into GCF |
2024-02-18 |
https://github.com/medema-group/BiG-SCAPE |
1.1.9 |
bigscape |
1.1.9 |
Up-to-date |
Metagenomics |
Clustering, Global alignment, Fold recognition |
Clustering, Global alignment, Fold recognition |
Phylogeny, Microbial ecology, Mapping, Metabolomics, Bioinformatics, Gene and protein families |
Phylogeny, Microbial ecology, Mapping, Metabolomics, Bioinformatics, Gene and protein families |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigscape/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bigscape |
BiG-SCAPE |
BiG-SCAPE |
A computational framework to explore large-scale biosynthetic diversity.BiG-SCAPE (Biosynthetic Gene Similarity Clustering and Prospecting Engine) is a software package, written in Python, that constructs sequence similarity networks of Biosynthetic Gene Clusters (BGCs) and groups them into Gene Cluster Families (GCFs). BiG-SCAPE does this by rapidly calculating a distance matrix between gene clusters based on a comparison of their protein domain content, order, copy number and sequence identity.It defines a distance metric between Gene Clusters using a combination of three indices (Jaccard Index of domain types, Domain Sequence Similarity the Adjacency...BiG-SCAPE and CORASON provide a set of tools to explore the diversity of biosynthetic gene clusters (BGCs) across large numbers of genomes, by constructing BGC sequence similarity networks, grouping BGCs into gene cluster families, and exploring gene cluster diversity linked to enzyme phylogenies. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
43 |
43 |
1196 |
1196 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1196 |
1196 |
43 |
43 |
|
|
|
bigwig_outlier_bed |
bigwig_outlier_bed |
pybigtools and numpy code to find continuous runs above a high or below a low quantile cutpoint in bigwig files |
2024-07-05 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed |
0.2.4 |
python |
|
To update |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bigwig_outlier_bed |
bigtools |
bigtools |
Bigtools is a library and associated tools for reading and writing bigwig and bigbed files. Rust. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
11 |
877 |
877 |
21 |
21 |
687 |
687 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1564 |
1564 |
32 |
32 |
https://usegalaxy.eu/published/workflow?id=3b94f511c52da835 |
|
|
binette |
binette |
Binning refinement tool |
2025-01-14 |
https://github.com/genotoul-bioinfo/Binette |
1.1.2 |
binette |
1.1.2 |
Up-to-date |
Metagenomics |
Read binning |
Read binning |
Metagenomics |
Metagenomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/binette/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/binette |
binette |
Binette |
Binette is a fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools. |
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
https://usegalaxy.eu/published/workflow?id=3f6c7249ef71ae41, https://usegalaxy.eu/published/workflow?id=7ecd92cb382d8168, https://usegalaxy.eu/published/workflow?id=83c5bf0208f4d217, https://usegalaxy.eu/published/workflow?id=aa5b077da1d36b23, https://usegalaxy.eu/published/workflow?id=b0377f05f97b18b1, https://usegalaxy.eu/published/workflow?id=ce5c9287a67e6085, https://usegalaxy.org/published/workflow?id=7251c6e0dad8f927, https://workflowhub.eu/workflows/1352?version=3 |
|
|
binning_refiner |
bin_refiner |
Reconciles the outputs of different binning programs with the aim to improve the quality of genome bins,especially with respect to contamination levels. |
2022-02-18 |
https://github.com/songweizhi/Binning_refiner |
1.4.3 |
binning_refiner |
1.4.3 |
Up-to-date |
Metagenomics |
Read binning, Sequence clustering |
Read binning, Sequence clustering |
Metagenomics, Sequence assembly, Microbial ecology |
Metagenomics, Sequence assembly, Microbial ecology |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/binning_refiner/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/binning_refiner |
binning_refiner |
Binning_refiner |
Improving genome bins through the combination of different binning programs |
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
50 |
50 |
161 |
161 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
161 |
161 |
50 |
50 |
|
|
|
bio_hansel |
bio_hansel |
Heidelberg and Enteritidis SNP Elucidation |
2017-09-29 |
https://github.com/phac-nml/bio_hansel |
2.6.1 |
bio_hansel |
2.6.1 |
Up-to-date |
Sequence Analysis |
Genotyping, SNP detection, Genome assembly |
Genotyping, SNP detection, Genome assembly |
Whole genome sequencing, DNA polymorphism, Genotype and phenotype, Infectious disease, Agricultural science |
Whole genome sequencing, DNA polymorphism, Genotype and phenotype, Infectious disease, Agricultural science |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/hansel |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/hansel |
Biohansel |
BioHansel |
BioHansel is a tool for performing high-resolution genotyping of bacterial isolates by identifying phylogenetically informative single nucleotide polymorphisms (SNPs), also known as canonical SNPs, in whole genome sequencing (WGS) data. The application uses a fast k-mer matching algorithm to map pathogen WGS data to canonical SNPs contained in hierarchically structured schemas and assigns genotypes based on the detected SNP profile. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
32 |
33 |
332 |
360 |
58 |
58 |
377 |
377 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
737 |
709 |
91 |
90 |
|
|
|
bioext |
bioext_bam2msa, bioext_bealign |
A suite of Galaxy tools designed around the BioExt extension to BioPython. Align sequences, merge duplicate sequences into one, and more! |
2016-11-03 |
https://pypi.python.org/pypi/biopython-extensions/ |
0.21.9 |
python-bioext |
0.21.9 |
Up-to-date |
Next Gen Mappers |
|
|
|
|
iuc |
https://github.com/davebx/bioext-gx/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bioext |
|
|
|
|
2 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
669 |
669 |
31488 |
31488 |
1159 |
1159 |
18020 |
18020 |
1 |
1 |
2 |
2 |
0 |
0 |
0 |
0 |
49510 |
49510 |
1829 |
1829 |
https://usegalaxy.eu/published/workflow?id=90f993a1b245eb68, https://usegalaxy.eu/published/workflow?id=b681f7b677b23168, https://usegalaxy.eu/published/workflow?id=fc0b9efa7d2e61e6, https://usegalaxy.org/published/workflow?id=4884918895db9af0, https://usegalaxy.org/published/workflow?id=63adc811e3ae529d, https://usegalaxy.org/published/workflow?id=c03c18813a3380b3 |
|
|
bioinformatics_cafe |
fasta_regex_finder |
Miscellanea of scripts for bioinformatics |
2023-01-25 |
https://github.com/dariober/bioinformatics-cafe/ |
0.1.0 |
python |
|
To update |
Sequence Analysis |
|
|
|
|
mbernt |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bioinformatics-cafe |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bioinformatics_cafe |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
110 |
110 |
1524 |
1524 |
95 |
95 |
1168 |
1168 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2692 |
2692 |
205 |
205 |
https://usegalaxy.eu/published/workflow?id=3fb550d7c2bc390a, https://usegalaxy.eu/published/workflow?id=629e57958afed44c |
variant-analysis/pox-tiled-amplicon, variant-analysis/sars-cov-2-variant-discovery |
|
biomformat |
biom_add_metadata, biom_convert, biom_from_uc, biom_normalize_table, biom_subset_table, biom_summarize_table |
The biom-format package provides a command line interface and Python API for working with BIOM files. |
2016-06-07 |
https://github.com/biocore/biom-format |
2.1.15 |
biom-format |
2.1.7 |
To update |
Metagenomics |
Formatting |
Formatting |
Laboratory information management, Sequence analysis |
Laboratory information management, Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/biom_format |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/biom_format |
biomformat |
biomformat |
This package includes basic tools for reading biom-format files, accessing and subsetting data tables from a biom object, as well as limited support for writing a biom-object back to a biom-format file. The design of this API is intended to match the python API and other tools included with the biom-format project, but with a decidedly "R flavor" that should be familiar to R users. This includes S4 classes and methods, as well as extensions of common core functions/methods. |
|
2 |
2 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
277 |
277 |
14928 |
14928 |
351 |
544 |
2771 |
5214 |
180 |
216 |
2268 |
2569 |
0 |
0 |
0 |
0 |
22711 |
19967 |
1037 |
808 |
https://usegalaxy.eu/published/workflow?id=08e25b733cd796e6, https://usegalaxy.eu/published/workflow?id=437704898229dfb6, https://usegalaxy.eu/published/workflow?id=466bdd8ba7b67264, https://usegalaxy.eu/published/workflow?id=8f747dbff3216993, https://usegalaxy.eu/published/workflow?id=e14b81a8c0b1b7a4, https://usegalaxy.eu/published/workflow?id=fb806b88850f3427, https://usegalaxy.org.au/published/workflow?id=14e80b7f9f68ec2a, https://usegalaxy.org.au/published/workflow?id=20d472fc5563a640, https://usegalaxy.org.au/published/workflow?id=4f837b7f90d5ebac, https://usegalaxy.org.au/published/workflow?id=869440d35a618836, https://usegalaxy.org.au/published/workflow?id=ca6f29110df8dadc, https://usegalaxy.org/published/workflow?id=45f959d5bf505b15, https://usegalaxy.org/published/workflow?id=8151be18aab3a3c6, https://workflowhub.eu/workflows/1270?version=2, https://workflowhub.eu/workflows/1273?version=2, https://workflowhub.eu/workflows/142?version=1, https://workflowhub.eu/workflows/232?version=1, https://workflowhub.eu/workflows/233?version=1 |
|
|
biotradis |
bacteria_tradis, tradis_essentiality, tradis_gene_insert_sites |
Bio-Tradis is a tool suite dedicated to essentiality analyses with TraDis data. |
2020-01-17 |
https://www.sanger.ac.uk/science/tools/bio-tradis |
1.4.5 |
biotradis |
1.4.5 |
Up-to-date |
Genome annotation |
Sequence analysis |
Sequence analysis |
Mobile genetic elements, Workflows |
Mobile genetic elements, Workflows |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/biotradis |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/biotradis |
biotradis |
biotradis |
The Bio::TraDIS pipeline provides software utilities for the processing, mapping, and analysis of transposon insertion sequencing data. The pipeline was designed with the data from the TraDIS sequencing protocol in mind, but should work with a variety of transposon insertion sequencing protocols as long as they produce data in the expected format. |
|
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
170 |
170 |
6465 |
6465 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6465 |
6465 |
170 |
170 |
|
|
|
biscot |
biscot |
Bionano scaffolding correction tool |
2023-01-06 |
https://github.com/institut-de-genomique/biscot |
2.3.3 |
biscot |
2.3.3 |
Up-to-date |
Assembly |
|
|
|
|
iuc |
https://github.com/bgruening/iuc/tree/master/tools/biscot |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/biscot |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
1 |
1 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
1 |
1 |
|
|
|
blastxml_to_gapped_gff3 |
blastxml_to_gapped_gff3 |
BlastXML to gapped GFF3 |
2015-05-25 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/blastxml_to_gapped_gff3 |
1.1 |
bcbiogff |
0.6.6 |
To update |
Convert Formats, Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/blastxml_to_gapped_gff3 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/blastxml_to_gapped_gff3 |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
112 |
114 |
770 |
784 |
69 |
69 |
181 |
181 |
18 |
18 |
157 |
157 |
0 |
0 |
0 |
0 |
1122 |
1108 |
201 |
199 |
https://usegalaxy.eu/published/workflow?id=0b9071d5dfa38559, https://usegalaxy.eu/published/workflow?id=44189803f223acd1, https://usegalaxy.eu/published/workflow?id=df7d9943423549df, https://usegalaxy.eu/published/workflow?id=f62d7c0c7cc57eb6 |
|
|
bowtie2 |
bowtie2 |
Bowtie2: Fast and sensitive read alignment |
2017-05-08 |
http://bowtie-bio.sourceforge.net/bowtie2 |
2.5.3 |
bowtie2 |
2.5.4 |
To update |
Next Gen Mappers |
Read mapping |
Read mapping |
Mapping, Genomics, Mapping |
Mapping, Genomics, Mapping |
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/bowtie2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bowtie2 |
bowtie2 |
Bowtie 2 |
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
1 |
1 |
1 |
0 |
13303 |
14904 |
422163 |
464976 |
34393 |
55511 |
593570 |
957866 |
3906 |
4566 |
65734 |
75207 |
1402 |
1404 |
22749 |
22822 |
1520871 |
1104216 |
76385 |
53004 |
https://dev.workflowhub.eu/workflows/1099?version=1, https://dev.workflowhub.eu/workflows/1103?version=1, https://dev.workflowhub.eu/workflows/1116?version=1, https://dev.workflowhub.eu/workflows/1120?version=1, https://dev.workflowhub.eu/workflows/1132?version=2, https://dev.workflowhub.eu/workflows/1152?version=2, https://dev.workflowhub.eu/workflows/1153?version=2, https://dev.workflowhub.eu/workflows/1161?version=2, https://dev.workflowhub.eu/workflows/1168?version=2, https://dev.workflowhub.eu/workflows/1169?version=2, https://dev.workflowhub.eu/workflows/1197?version=2, https://dev.workflowhub.eu/workflows/1265?version=1, https://dev.workflowhub.eu/workflows/1269?version=1, https://dev.workflowhub.eu/workflows/1307?version=1, https://dev.workflowhub.eu/workflows/145?version=1, https://dev.workflowhub.eu/workflows/198?version=2, https://dev.workflowhub.eu/workflows/574?version=1, https://dev.workflowhub.eu/workflows/583?version=1, https://usegalaxy.eu/published/workflow?id=006ea49456a2a8ca, https://usegalaxy.eu/published/workflow?id=007ce6405d196df3, https://usegalaxy.eu/published/workflow?id=01dc0619e050dc91, https://usegalaxy.eu/published/workflow?id=02655d0e4af0ee0d, https://usegalaxy.eu/published/workflow?id=03d1d2e0dc6e2024, https://usegalaxy.eu/published/workflow?id=0563f58718be932d, https://usegalaxy.eu/published/workflow?id=0599f049e4697839, https://usegalaxy.eu/published/workflow?id=0622a66ce02ae8b7, https://usegalaxy.eu/published/workflow?id=0821ec1cb4d6f30b, https://usegalaxy.eu/published/workflow?id=0882300f7b399587, https://usegalaxy.eu/published/workflow?id=0e5b701ed5ca69a7, https://usegalaxy.eu/published/workflow?id=1089e5c66dbcc1a3, https://usegalaxy.eu/published/workflow?id=111527fe542846af, https://usegalaxy.eu/published/workflow?id=11290f22e13899bd, https://usegalaxy.eu/published/workflow?id=146cef3acb2eba75, https://usegalaxy.eu/published/workflow?id=14b9753269cd368f, https://usegalaxy.eu/published/workflow?id=1524b189069b42a5, https://usegalaxy.eu/published/workflow?id=166eb3f14feffa1b, https://usegalaxy.eu/published/workflow?id=1860e02bcb894a64, https://usegalaxy.eu/published/workflow?id=1aa1344d6145ade3, https://usegalaxy.eu/published/workflow?id=1c44bbaa5f4f8b54, https://usegalaxy.eu/published/workflow?id=1cd85fe90839c10d, https://usegalaxy.eu/published/workflow?id=1d41197b6c664b68, https://usegalaxy.eu/published/workflow?id=1dba8278fb2786fb, https://usegalaxy.eu/published/workflow?id=1e22a76bea3f46ff, https://usegalaxy.eu/published/workflow?id=1e5f1d9a51032e44, https://usegalaxy.eu/published/workflow?id=1eac2ebffcbb8d59, https://usegalaxy.eu/published/workflow?id=1ee43d90b69829e9, https://usegalaxy.eu/published/workflow?id=21a39ac4c1becb31, https://usegalaxy.eu/published/workflow?id=231a2dc7412d250b, https://usegalaxy.eu/published/workflow?id=25850714d13f0b0f, https://usegalaxy.eu/published/workflow?id=25aa944237d7fb82, https://usegalaxy.eu/published/workflow?id=2c5cae1389c11881, https://usegalaxy.eu/published/workflow?id=2cf9f0e2ab5a7f8b, https://usegalaxy.eu/published/workflow?id=2f053b615d9788bf, https://usegalaxy.eu/published/workflow?id=2f1ee01aeee2b9f0, https://usegalaxy.eu/published/workflow?id=2f51a82838722bec, https://usegalaxy.eu/published/workflow?id=30e7dc81e323cbdb, https://usegalaxy.eu/published/workflow?id=326d4102190b74fc, https://usegalaxy.eu/published/workflow?id=3588c40cab9b4e1d, https://usegalaxy.eu/published/workflow?id=3817cfbab7b39ee1, https://usegalaxy.eu/published/workflow?id=3828466d773e508c, https://usegalaxy.eu/published/workflow?id=39b195a36408277c, https://usegalaxy.eu/published/workflow?id=3b8ef7905c902b27, https://usegalaxy.eu/published/workflow?id=3ce75b5de4922cba, https://usegalaxy.eu/published/workflow?id=3f6c7249ef71ae41, https://usegalaxy.eu/published/workflow?id=4176b9d43325a8d8, https://usegalaxy.eu/published/workflow?id=41b5f0d519404df7, https://usegalaxy.eu/published/workflow?id=43098b8afe78b071, https://usegalaxy.eu/published/workflow?id=443ea80b36d862f5, https://usegalaxy.eu/published/workflow?id=44a2b6c8ae54eb31, https://usegalaxy.eu/published/workflow?id=4566262dd0acc8ab, https://usegalaxy.eu/published/workflow?id=45f63151bf4f1a49, https://usegalaxy.eu/published/workflow?id=4643edf74f3eaec3, https://usegalaxy.eu/published/workflow?id=464b642261ed7452, https://usegalaxy.eu/published/workflow?id=478190607a114390, https://usegalaxy.eu/published/workflow?id=48f63ef14a12f306, https://usegalaxy.eu/published/workflow?id=4a51e616d96338ed, https://usegalaxy.eu/published/workflow?id=4daa0c33d6d50379, https://usegalaxy.eu/published/workflow?id=503a2f4caacaf63e, https://usegalaxy.eu/published/workflow?id=5138874b208adb4b, https://usegalaxy.eu/published/workflow?id=5279af5c95ae4f7a, https://usegalaxy.eu/published/workflow?id=536368c5922ef17b, https://usegalaxy.eu/published/workflow?id=54b91dd86f463391, https://usegalaxy.eu/published/workflow?id=55ead91471bf1008, https://usegalaxy.eu/published/workflow?id=57769c948e14f9ac, https://usegalaxy.eu/published/workflow?id=579ff83177c5ee09, https://usegalaxy.eu/published/workflow?id=58f779d238d569dc, https://usegalaxy.eu/published/workflow?id=5b46c8533cd95447, https://usegalaxy.eu/published/workflow?id=5e4135eeb4972709, https://usegalaxy.eu/published/workflow?id=5ec0d6d108e02e1a, https://usegalaxy.eu/published/workflow?id=606a04c4aa95d010, https://usegalaxy.eu/published/workflow?id=61fe08fb3d5e83f8, https://usegalaxy.eu/published/workflow?id=62c47e3c9d4f3aa3, https://usegalaxy.eu/published/workflow?id=63478edcea3f449a, https://usegalaxy.eu/published/workflow?id=67be21795d403ca3, https://usegalaxy.eu/published/workflow?id=6bce1d419a179c50, https://usegalaxy.eu/published/workflow?id=6be946c7ec91835e, https://usegalaxy.eu/published/workflow?id=6deb9781d9f45a52, https://usegalaxy.eu/published/workflow?id=6fb2bd16960be65b, https://usegalaxy.eu/published/workflow?id=70b1c40b818cc320, https://usegalaxy.eu/published/workflow?id=72e3e5fdc766e24a, https://usegalaxy.eu/published/workflow?id=74e4a8f2edb25f1a, https://usegalaxy.eu/published/workflow?id=77d2adf5249eb826, https://usegalaxy.eu/published/workflow?id=79fd2517af48c594, https://usegalaxy.eu/published/workflow?id=7aa0af193da74f60, https://usegalaxy.eu/published/workflow?id=7aa32aba3fde0708, https://usegalaxy.eu/published/workflow?id=7b2b1e08b8576e2e, https://usegalaxy.eu/published/workflow?id=7d44ea091d437edf, https://usegalaxy.eu/published/workflow?id=7d84b0419296857d, https://usegalaxy.eu/published/workflow?id=7e0ba4c14803448e, https://usegalaxy.eu/published/workflow?id=7ecd92cb382d8168, https://usegalaxy.eu/published/workflow?id=8132c3b710fd6d48, https://usegalaxy.eu/published/workflow?id=830eb4faff21eb0c, https://usegalaxy.eu/published/workflow?id=83c5bf0208f4d217, https://usegalaxy.eu/published/workflow?id=8ab6a554cdea5195, https://usegalaxy.eu/published/workflow?id=8bb0caa154111585, https://usegalaxy.eu/published/workflow?id=93a7047396080fda, https://usegalaxy.eu/published/workflow?id=93d1035a307fe63d, https://usegalaxy.eu/published/workflow?id=93e32219d412c1f1, https://usegalaxy.eu/published/workflow?id=94b9287365ea4d0d, https://usegalaxy.eu/published/workflow?id=97312d273b6e8bd9, https://usegalaxy.eu/published/workflow?id=987a2abb5cd56e57, https://usegalaxy.eu/published/workflow?id=9ad5aff92e185907, https://usegalaxy.eu/published/workflow?id=9b9e1e28f3683f92, https://usegalaxy.eu/published/workflow?id=9c24df68dc7d25a4, https://usegalaxy.eu/published/workflow?id=a108b575b16e6cb9, https://usegalaxy.eu/published/workflow?id=a4e3667f6879bfaf, https://usegalaxy.eu/published/workflow?id=a52c5dd688def9ba, https://usegalaxy.eu/published/workflow?id=a76629eccfdeafb8, https://usegalaxy.eu/published/workflow?id=aa5b077da1d36b23, https://usegalaxy.eu/published/workflow?id=ad4b347f9b68e127, https://usegalaxy.eu/published/workflow?id=af3500703833c8f4, https://usegalaxy.eu/published/workflow?id=b02d90c32dc67730, https://usegalaxy.eu/published/workflow?id=b0377f05f97b18b1, https://usegalaxy.eu/published/workflow?id=b14845359b702444, https://usegalaxy.eu/published/workflow?id=b323867a9efcc6c6, https://usegalaxy.eu/published/workflow?id=b5e3360f933d1950, https://usegalaxy.eu/published/workflow?id=b681f7b677b23168, https://usegalaxy.eu/published/workflow?id=b84fd6a0e2632ad9, https://usegalaxy.eu/published/workflow?id=b9ad204395f7d931, https://usegalaxy.eu/published/workflow?id=bc79a9f797334b01, https://usegalaxy.eu/published/workflow?id=bdc7cfaac0db2eab, https://usegalaxy.eu/published/workflow?id=c00fe92f9a579a15, https://usegalaxy.eu/published/workflow?id=c09159d7aad0f264, https://usegalaxy.eu/published/workflow?id=c0d1e965daf89006, https://usegalaxy.eu/published/workflow?id=c3eba26c5d7febff, https://usegalaxy.eu/published/workflow?id=c6ca9e6fd28979f8, https://usegalaxy.eu/published/workflow?id=c7a8f7aabc219831, https://usegalaxy.eu/published/workflow?id=c7e1aee909c9b483, https://usegalaxy.eu/published/workflow?id=c8b961a3ad0fb93e, https://usegalaxy.eu/published/workflow?id=c9aff55e39e195e3, https://usegalaxy.eu/published/workflow?id=ca4e564da54d057b, https://usegalaxy.eu/published/workflow?id=cb2df493f5e334f7, https://usegalaxy.eu/published/workflow?id=cd3398e29f375d97, https://usegalaxy.eu/published/workflow?id=ce5c16ac23c4fbb1, https://usegalaxy.eu/published/workflow?id=ce5c9287a67e6085, https://usegalaxy.eu/published/workflow?id=cf9dc7ad34c81fa2, https://usegalaxy.eu/published/workflow?id=cfe47f0c78ed5ec4, https://usegalaxy.eu/published/workflow?id=d12617d0df5f81d0, https://usegalaxy.eu/published/workflow?id=d4603d244cf8ac5b, https://usegalaxy.eu/published/workflow?id=d768c0e0df4d432e, https://usegalaxy.eu/published/workflow?id=d83280cd72ec0f33, https://usegalaxy.eu/published/workflow?id=da5d4e3e6c66cf3b, https://usegalaxy.eu/published/workflow?id=db10c092fad70d69, https://usegalaxy.eu/published/workflow?id=de9003e589631029, https://usegalaxy.eu/published/workflow?id=e5f6d12e08d7a13b, https://usegalaxy.eu/published/workflow?id=ebbf5cfa946d11d3, https://usegalaxy.eu/published/workflow?id=f14ebad1c3c20067, https://usegalaxy.eu/published/workflow?id=f5005e80d9ffa109, https://usegalaxy.eu/published/workflow?id=f54b4d76f7f9a589, https://usegalaxy.eu/published/workflow?id=f6b55599db1ab056, https://usegalaxy.eu/published/workflow?id=fa0ff9a0db8bbddb, https://usegalaxy.eu/published/workflow?id=fa670d951fc4f778, https://usegalaxy.eu/published/workflow?id=fd6429a788660c8d, https://usegalaxy.fr/published/workflow?id=57b5a45c9f71a09c, https://usegalaxy.fr/published/workflow?id=ca0bd0e42cb774f9, https://usegalaxy.fr/published/workflow?id=ff14dc4005e92cfd, https://usegalaxy.org.au/published/workflow?id=0a477899db53d098, https://usegalaxy.org.au/published/workflow?id=0f7406ada6706c91, https://usegalaxy.org.au/published/workflow?id=14b17f17d03c8424, https://usegalaxy.org.au/published/workflow?id=18d48f1b26811372, https://usegalaxy.org.au/published/workflow?id=1dd4392c51766383, https://usegalaxy.org.au/published/workflow?id=1ff259845498b818, https://usegalaxy.org.au/published/workflow?id=2543e425fa6d5144, https://usegalaxy.org.au/published/workflow?id=2617fee24459e680, https://usegalaxy.org.au/published/workflow?id=2789fb3590727342, https://usegalaxy.org.au/published/workflow?id=2980172ed0226b59, https://usegalaxy.org.au/published/workflow?id=2f520cb446adf726, https://usegalaxy.org.au/published/workflow?id=31dbd313e5c8160b, https://usegalaxy.org.au/published/workflow?id=32d28f800adcea42, https://usegalaxy.org.au/published/workflow?id=3d5deed70ac9bde4, https://usegalaxy.org.au/published/workflow?id=3e7fcfd23872ad0d, https://usegalaxy.org.au/published/workflow?id=41bd0340dcde60ec, https://usegalaxy.org.au/published/workflow?id=41e005d4ebb5885a, https://usegalaxy.org.au/published/workflow?id=46f352c70356184a, https://usegalaxy.org.au/published/workflow?id=48a25f8e58d068e6, https://usegalaxy.org.au/published/workflow?id=4bd6c5c12fb1a69a, https://usegalaxy.org.au/published/workflow?id=52056336f24eccf6, https://usegalaxy.org.au/published/workflow?id=57b558e1a76c09e1, https://usegalaxy.org.au/published/workflow?id=6a04c54236f30e8d, https://usegalaxy.org.au/published/workflow?id=6b2716309947836d, https://usegalaxy.org.au/published/workflow?id=6b3df543536faf8c, https://usegalaxy.org.au/published/workflow?id=6efcacf14bfc18b3, https://usegalaxy.org.au/published/workflow?id=79ca45e45d76871f, https://usegalaxy.org.au/published/workflow?id=7a4ee63a04362967, https://usegalaxy.org.au/published/workflow?id=7ad9410e36ee9ea1, https://usegalaxy.org.au/published/workflow?id=7c2e7b292803b3e9, https://usegalaxy.org.au/published/workflow?id=7d268e7209a68e2e, https://usegalaxy.org.au/published/workflow?id=8433a2f79b2e5894, https://usegalaxy.org.au/published/workflow?id=9787c8b7adeedb0c, https://usegalaxy.org.au/published/workflow?id=99821674db7682bb, https://usegalaxy.org.au/published/workflow?id=9bc31dff5bcec42b, https://usegalaxy.org.au/published/workflow?id=9c60b83feaa22415, https://usegalaxy.org.au/published/workflow?id=a29670ff0ecb1a38, https://usegalaxy.org.au/published/workflow?id=a35e5a238a70176a, https://usegalaxy.org.au/published/workflow?id=a484cdc9ff9d7e9e, https://usegalaxy.org.au/published/workflow?id=a5ccbb9aced9ac53, https://usegalaxy.org.au/published/workflow?id=a820d57cc8300253, https://usegalaxy.org.au/published/workflow?id=a8ec08a1408cd6e7, https://usegalaxy.org.au/published/workflow?id=b191da6e594747fb, https://usegalaxy.org.au/published/workflow?id=b20f28151e46d3e0, https://usegalaxy.org.au/published/workflow?id=b59fada651043735, https://usegalaxy.org.au/published/workflow?id=b8968fb0bf796e53, https://usegalaxy.org.au/published/workflow?id=c456492ce4f963d0, https://usegalaxy.org.au/published/workflow?id=c87c1f8c4eff415a, https://usegalaxy.org.au/published/workflow?id=ce7106593536f900, https://usegalaxy.org.au/published/workflow?id=cef4a514f35576e5, https://usegalaxy.org.au/published/workflow?id=d7c329b354f4426d, https://usegalaxy.org.au/published/workflow?id=daff6854b5dfc6f1, https://usegalaxy.org.au/published/workflow?id=e0b89b4e50d1a99b, https://usegalaxy.org.au/published/workflow?id=e57c6d05b560e206, https://usegalaxy.org.au/published/workflow?id=e92b4d8dfa2f1cf7, https://usegalaxy.org.au/published/workflow?id=fa4fa7353dffef9a, https://usegalaxy.org.au/published/workflow?id=fa87a22c8dcd8d78, https://usegalaxy.org.au/published/workflow?id=fc3c83b11f527977, https://usegalaxy.org.au/published/workflow?id=fe4e34a407157389, https://usegalaxy.org/published/workflow?id=00bc4e99626da1ba, https://usegalaxy.org/published/workflow?id=028f1beead539975, https://usegalaxy.org/published/workflow?id=02e29499b946f3bb, https://usegalaxy.org/published/workflow?id=02ff4efb583aaf49, https://usegalaxy.org/published/workflow?id=05e86b4df0d14800, https://usegalaxy.org/published/workflow?id=05ed292f512db24e, https://usegalaxy.org/published/workflow?id=063173d36c254105, https://usegalaxy.org/published/workflow?id=06b489dc859f6e39, https://usegalaxy.org/published/workflow?id=06f3ca70b542556e, https://usegalaxy.org/published/workflow?id=07dca0dc191fb1de, https://usegalaxy.org/published/workflow?id=08bdcecd1cb0bda3, https://usegalaxy.org/published/workflow?id=08da44d18689dffc, https://usegalaxy.org/published/workflow?id=08f58af7b6cc0ab6, https://usegalaxy.org/published/workflow?id=091f788edad78956, https://usegalaxy.org/published/workflow?id=098375608a1223aa, https://usegalaxy.org/published/workflow?id=098fd236c5e2895d, https://usegalaxy.org/published/workflow?id=0b1fa3e8d05d6e53, https://usegalaxy.org/published/workflow?id=0d47009eb2d7bdc1, https://usegalaxy.org/published/workflow?id=0d8eb75d28fa7df2, https://usegalaxy.org/published/workflow?id=0d8ec47a84766f96, https://usegalaxy.org/published/workflow?id=0e3e3958f55c606e, https://usegalaxy.org/published/workflow?id=0e6a842034ca9aec, https://usegalaxy.org/published/workflow?id=0ebb1f5b6c9c8ab9, https://usegalaxy.org/published/workflow?id=0ee0493f3168cbb3, https://usegalaxy.org/published/workflow?id=0f308c521abfe2c9, https://usegalaxy.org/published/workflow?id=0f3f91de5f022b6e, https://usegalaxy.org/published/workflow?id=0f8b4fd0bf276968, https://usegalaxy.org/published/workflow?id=1010a9b57c77239c, https://usegalaxy.org/published/workflow?id=10c5f3c5cadd7417, https://usegalaxy.org/published/workflow?id=1250ec3ad6199cda, https://usegalaxy.org/published/workflow?id=12a52ae52e0f1053, https://usegalaxy.org/published/workflow?id=13a1fa4f6daf65cc, https://usegalaxy.org/published/workflow?id=148c071f5c5a4586, https://usegalaxy.org/published/workflow?id=150e288c2c2fe9e9, https://usegalaxy.org/published/workflow?id=156e245e3d9f22ce, https://usegalaxy.org/published/workflow?id=15ea806eaf077617, https://usegalaxy.org/published/workflow?id=162fda90525220de, https://usegalaxy.org/published/workflow?id=172ee5e5bef33d2e, https://usegalaxy.org/published/workflow?id=17f3d7e52777d2e8, https://usegalaxy.org/published/workflow?id=1829c91a30138721, https://usegalaxy.org/published/workflow?id=195f7acb16c5a2e2, https://usegalaxy.org/published/workflow?id=19c1ba21e82d8615, https://usegalaxy.org/published/workflow?id=1a23d8c795846251, https://usegalaxy.org/published/workflow?id=1b4ac2bc54435ae4, https://usegalaxy.org/published/workflow?id=1b57987895f8ca9e, https://usegalaxy.org/published/workflow?id=1cad9a0b375ed3d1, https://usegalaxy.org/published/workflow?id=1cbd946c4cc0e7b9, https://usegalaxy.org/published/workflow?id=1d56a0975fca0e99, https://usegalaxy.org/published/workflow?id=1d69ab87c94d68fd, https://usegalaxy.org/published/workflow?id=1d8227ad3f3651a0, https://usegalaxy.org/published/workflow?id=1dd63a7b4c6f4c83, https://usegalaxy.org/published/workflow?id=1ddabc7d272dc702, https://usegalaxy.org/published/workflow?id=1e0a55635f5b04cf, https://usegalaxy.org/published/workflow?id=1e1d7fac7e241768, https://usegalaxy.org/published/workflow?id=1f00e44f590b8369, https://usegalaxy.org/published/workflow?id=1ffc71df8eeed57e, https://usegalaxy.org/published/workflow?id=2078abc4c99c3344, https://usegalaxy.org/published/workflow?id=2135b0255284752c, https://usegalaxy.org/published/workflow?id=21a047a4e068860f, https://usegalaxy.org/published/workflow?id=21b416bcf0b8c8cf, https://usegalaxy.org/published/workflow?id=23c4e801213eee50, https://usegalaxy.org/published/workflow?id=262ab42118016c41, https://usegalaxy.org/published/workflow?id=27ee9da9121d0522, https://usegalaxy.org/published/workflow?id=291829fed6fa7c44, https://usegalaxy.org/published/workflow?id=2957924403998f3a, https://usegalaxy.org/published/workflow?id=2b0d73370a1577b4, https://usegalaxy.org/published/workflow?id=2b5346b94358df88, https://usegalaxy.org/published/workflow?id=2bf89464c21ec7cd, https://usegalaxy.org/published/workflow?id=2cc5472ad7c039d1, https://usegalaxy.org/published/workflow?id=2ceff2cf26eae4cd, https://usegalaxy.org/published/workflow?id=2d6d74294e911fa3, https://usegalaxy.org/published/workflow?id=2e029537d2f4ab50, https://usegalaxy.org/published/workflow?id=2f4d5f833aa1c981, https://usegalaxy.org/published/workflow?id=303af6cec326947c, https://usegalaxy.org/published/workflow?id=30ba39be60ec29be, https://usegalaxy.org/published/workflow?id=313d50268e1e22e4, https://usegalaxy.org/published/workflow?id=326ced2230a49c26, https://usegalaxy.org/published/workflow?id=32c769241ffce3d1, https://usegalaxy.org/published/workflow?id=336795e890851c21, https://usegalaxy.org/published/workflow?id=33e827d75a0074df, https://usegalaxy.org/published/workflow?id=35c022174ce79c1e, https://usegalaxy.org/published/workflow?id=3673a1ced343d0d0, https://usegalaxy.org/published/workflow?id=3680984663c813e1, https://usegalaxy.org/published/workflow?id=3767c9c07462b777, https://usegalaxy.org/published/workflow?id=3823773ef4ecaaf4, https://usegalaxy.org/published/workflow?id=399b4543d26990f2, https://usegalaxy.org/published/workflow?id=39d2d8b7557a3aa4, https://usegalaxy.org/published/workflow?id=3aa1b79aa6cca06b, https://usegalaxy.org/published/workflow?id=3b2bee20f0cfd957, https://usegalaxy.org/published/workflow?id=3b5437544ca3b5dc, https://usegalaxy.org/published/workflow?id=3c076bc8551a23d2, https://usegalaxy.org/published/workflow?id=3c0af11dbeeee506, https://usegalaxy.org/published/workflow?id=3d0ba2f11f370e05, https://usegalaxy.org/published/workflow?id=3dbe754882a263cd, https://usegalaxy.org/published/workflow?id=3df85f2e7e157514, https://usegalaxy.org/published/workflow?id=3e2bbafb8c6580af, https://usegalaxy.org/published/workflow?id=3fc5bdbd6355477c, https://usegalaxy.org/published/workflow?id=424acfc2ded46f9f, https://usegalaxy.org/published/workflow?id=442949862ba62462, https://usegalaxy.org/published/workflow?id=444c856f03b6d2a7, https://usegalaxy.org/published/workflow?id=448a0797f9150198, https://usegalaxy.org/published/workflow?id=45cb3e98b1319c7c, https://usegalaxy.org/published/workflow?id=4612ec88a57ab9e7, https://usegalaxy.org/published/workflow?id=46e718fb8eeb4d54, https://usegalaxy.org/published/workflow?id=472f73c3e81da1d9, https://usegalaxy.org/published/workflow?id=4790266996f12979, https://usegalaxy.org/published/workflow?id=47a2458ee9d57b24, https://usegalaxy.org/published/workflow?id=48963532e030de6c, https://usegalaxy.org/published/workflow?id=496b0e8a0e5a4191, https://usegalaxy.org/published/workflow?id=49c61c378cacfe02, https://usegalaxy.org/published/workflow?id=4a01263e3d4b4edb, https://usegalaxy.org/published/workflow?id=4a95226c24ccbf3c, https://usegalaxy.org/published/workflow?id=4b7daa3c73c8ef30, https://usegalaxy.org/published/workflow?id=4ca8b023f9a33440, https://usegalaxy.org/published/workflow?id=4cc70b699ea8bc63, https://usegalaxy.org/published/workflow?id=506acac8c6a58d5e, https://usegalaxy.org/published/workflow?id=5199f404ad7ecef8, https://usegalaxy.org/published/workflow?id=51d80a44d7d6fff7, https://usegalaxy.org/published/workflow?id=52592de9687fc6de, https://usegalaxy.org/published/workflow?id=527adadecbab2eb6, https://usegalaxy.org/published/workflow?id=528ed34505b1a993, https://usegalaxy.org/published/workflow?id=52a2cca52985cdc7, https://usegalaxy.org/published/workflow?id=52b7524a3941885c, https://usegalaxy.org/published/workflow?id=52bde903adbbaf60, https://usegalaxy.org/published/workflow?id=52e2b69787ca7a17, https://usegalaxy.org/published/workflow?id=533b1d5d08f9943e, https://usegalaxy.org/published/workflow?id=53dda64a5a6ebd54, https://usegalaxy.org/published/workflow?id=53f11afc67ffb66f, https://usegalaxy.org/published/workflow?id=553125cd799e5982, https://usegalaxy.org/published/workflow?id=5532e6f775adb0d7, https://usegalaxy.org/published/workflow?id=55c09bcdf3d7ae16, https://usegalaxy.org/published/workflow?id=570172fbcf865e1d, https://usegalaxy.org/published/workflow?id=57fdd0bae83f2c97, https://usegalaxy.org/published/workflow?id=58eeb06f911e8410, https://usegalaxy.org/published/workflow?id=59007e2bc9c807ee, https://usegalaxy.org/published/workflow?id=5a16ff38eb80da82, https://usegalaxy.org/published/workflow?id=5a272f266a1fa4ac, https://usegalaxy.org/published/workflow?id=5a55d9bd9701b1ce, https://usegalaxy.org/published/workflow?id=5b8497a32bf01c4f, https://usegalaxy.org/published/workflow?id=5cb74afcca56a453, https://usegalaxy.org/published/workflow?id=5ccc7d708e13de60, https://usegalaxy.org/published/workflow?id=5d1208bd49f97aeb, https://usegalaxy.org/published/workflow?id=5dd0a672cceb15ec, https://usegalaxy.org/published/workflow?id=5e18bbbe9ff2d9f5, https://usegalaxy.org/published/workflow?id=5eb2e090df59d9a9, https://usegalaxy.org/published/workflow?id=5efe288b18c7d0ab, https://usegalaxy.org/published/workflow?id=607d1683d6e26cef, https://usegalaxy.org/published/workflow?id=60b9910b7bb69f47, https://usegalaxy.org/published/workflow?id=60e999ef3dcff4ca, https://usegalaxy.org/published/workflow?id=6229546fb8b0eba9, https://usegalaxy.org/published/workflow?id=623dcf47f7963700, https://usegalaxy.org/published/workflow?id=62c842e67fca5ab7, https://usegalaxy.org/published/workflow?id=62ecc8078a396e9e, https://usegalaxy.org/published/workflow?id=63f61ad7cae40646, https://usegalaxy.org/published/workflow?id=642e71c64a975461, https://usegalaxy.org/published/workflow?id=64a329cf75834d6b, https://usegalaxy.org/published/workflow?id=64af2cd469fee16a, https://usegalaxy.org/published/workflow?id=66e6b41f6c6d52b7, https://usegalaxy.org/published/workflow?id=672125473ec700bc, https://usegalaxy.org/published/workflow?id=676fa9af68f6a763, https://usegalaxy.org/published/workflow?id=67992bf894a82587, https://usegalaxy.org/published/workflow?id=67c2ca24bc0be58e, https://usegalaxy.org/published/workflow?id=683a0ab042fa34c9, https://usegalaxy.org/published/workflow?id=68495cc8ec3d46df, https://usegalaxy.org/published/workflow?id=688a55b9ec2f5bf7, https://usegalaxy.org/published/workflow?id=695d20ef3ee4cf1e, https://usegalaxy.org/published/workflow?id=69edab5d6ad91556, https://usegalaxy.org/published/workflow?id=6a174e7498434bd5, https://usegalaxy.org/published/workflow?id=6c68072bf72e6c4a, https://usegalaxy.org/published/workflow?id=6c95a357a3c1f399, https://usegalaxy.org/published/workflow?id=6d925811544f594b, https://usegalaxy.org/published/workflow?id=6da54816b436dc58, https://usegalaxy.org/published/workflow?id=6db96a9c7e4b8d14, https://usegalaxy.org/published/workflow?id=6dfe0c6e87c6cb7b, https://usegalaxy.org/published/workflow?id=6e47a35cc5f2bdce, https://usegalaxy.org/published/workflow?id=6ea1bd64873b6c18, https://usegalaxy.org/published/workflow?id=6ec8b101d24a0f4f, https://usegalaxy.org/published/workflow?id=6ecfa8ce19ed86da, https://usegalaxy.org/published/workflow?id=6fa88ca75caba8e4, https://usegalaxy.org/published/workflow?id=70dacee3da375e2b, https://usegalaxy.org/published/workflow?id=70f9c7cc75a1d3c0, https://usegalaxy.org/published/workflow?id=716dc497d7d2e1c3, https://usegalaxy.org/published/workflow?id=729780617ceb80db, https://usegalaxy.org/published/workflow?id=72d134a60c694b59, https://usegalaxy.org/published/workflow?id=73d98e5f821a78b3, https://usegalaxy.org/published/workflow?id=73f5b1a6fd3c703f, https://usegalaxy.org/published/workflow?id=74c98eafd363cc2b, https://usegalaxy.org/published/workflow?id=75324d68ed124ff5, https://usegalaxy.org/published/workflow?id=75e23bc4e1ac2f5b, https://usegalaxy.org/published/workflow?id=75fffbce810acaf3, https://usegalaxy.org/published/workflow?id=761675cb2c9ad2ef, https://usegalaxy.org/published/workflow?id=7643e66a9b4e9c11, https://usegalaxy.org/published/workflow?id=76d5143860fac947, https://usegalaxy.org/published/workflow?id=76fb573f1372ae86, https://usegalaxy.org/published/workflow?id=76fff93650152579, https://usegalaxy.org/published/workflow?id=7757cd56fa4d060c, https://usegalaxy.org/published/workflow?id=77d1505c0dd65e26, https://usegalaxy.org/published/workflow?id=7832cfdeabe47696, https://usegalaxy.org/published/workflow?id=786aa9e2bd723629, https://usegalaxy.org/published/workflow?id=789647a199e563fd, https://usegalaxy.org/published/workflow?id=78db135e2aa5789d, https://usegalaxy.org/published/workflow?id=7965d84a9f71da93, https://usegalaxy.org/published/workflow?id=7a33bc2d0970b502, https://usegalaxy.org/published/workflow?id=7b9e17cb1d72d7e4, https://usegalaxy.org/published/workflow?id=7c4a2339b17a8930, https://usegalaxy.org/published/workflow?id=7cee34a6c06c21e4, https://usegalaxy.org/published/workflow?id=7d11026214dd8c93, https://usegalaxy.org/published/workflow?id=7decdde67868ed0f, https://usegalaxy.org/published/workflow?id=7df3246858cd83d1, https://usegalaxy.org/published/workflow?id=7ee7412cdd82f1ee, https://usegalaxy.org/published/workflow?id=7fb4dae5daab0522, https://usegalaxy.org/published/workflow?id=803215ef8142c069, https://usegalaxy.org/published/workflow?id=803aec95399f7073, https://usegalaxy.org/published/workflow?id=8095deba606ebd5e, https://usegalaxy.org/published/workflow?id=824730064b5014e5, https://usegalaxy.org/published/workflow?id=839cac17365affb7, https://usegalaxy.org/published/workflow?id=842c09b49c456429, https://usegalaxy.org/published/workflow?id=85011076892808e0, https://usegalaxy.org/published/workflow?id=85bc37a59a6ea443, https://usegalaxy.org/published/workflow?id=8756aabc654b1050, https://usegalaxy.org/published/workflow?id=875ff758068e1c2f, https://usegalaxy.org/published/workflow?id=87756e064ab1e28a, https://usegalaxy.org/published/workflow?id=87c1bdc00b975377, https://usegalaxy.org/published/workflow?id=87d7a69106ca663d, https://usegalaxy.org/published/workflow?id=885f0e66fa6b8790, https://usegalaxy.org/published/workflow?id=88e10493f7e6b9d5, https://usegalaxy.org/published/workflow?id=8990ae43ae855bc7, https://usegalaxy.org/published/workflow?id=899f4f371b4c958c, https://usegalaxy.org/published/workflow?id=89f48993bb8f94bd, https://usegalaxy.org/published/workflow?id=8a215695e7b57cf5, https://usegalaxy.org/published/workflow?id=8bf608c6fd0dabd0, https://usegalaxy.org/published/workflow?id=8cbb9936e88d4f49, https://usegalaxy.org/published/workflow?id=8e2b2a40831dfb08, https://usegalaxy.org/published/workflow?id=8e509c87d143022c, https://usegalaxy.org/published/workflow?id=8e918c12d2f0d1fc, https://usegalaxy.org/published/workflow?id=8e9a94fe8e3fef9d, https://usegalaxy.org/published/workflow?id=8ec186ed3f0470e2, https://usegalaxy.org/published/workflow?id=8f392d06d32bdf14, https://usegalaxy.org/published/workflow?id=907aaf55487ddf43, https://usegalaxy.org/published/workflow?id=90ed607bedd65524, https://usegalaxy.org/published/workflow?id=9124c2ec80b35680, https://usegalaxy.org/published/workflow?id=914ec4d8fc0022e4, https://usegalaxy.org/published/workflow?id=916a116b69ac5eeb, https://usegalaxy.org/published/workflow?id=917e5a21d51a61ce, https://usegalaxy.org/published/workflow?id=91806144e90637e8, https://usegalaxy.org/published/workflow?id=9255c0c9017b139f, https://usegalaxy.org/published/workflow?id=92875b13082b5568, https://usegalaxy.org/published/workflow?id=92aab10842ff610d, https://usegalaxy.org/published/workflow?id=9373050c3ce80d56, https://usegalaxy.org/published/workflow?id=93cb976bd4ae546e, https://usegalaxy.org/published/workflow?id=94ab68d27de2e60f, https://usegalaxy.org/published/workflow?id=96ae2544e22d34c5, https://usegalaxy.org/published/workflow?id=96cdba1fe599ada8, https://usegalaxy.org/published/workflow?id=9763787d7b102f39, https://usegalaxy.org/published/workflow?id=97c20a819394e381, https://usegalaxy.org/published/workflow?id=98a4b90f7fc2bfce, https://usegalaxy.org/published/workflow?id=995cc428eace3bc4, https://usegalaxy.org/published/workflow?id=9990b6e2facf6dca, https://usegalaxy.org/published/workflow?id=99ee567c092fb34c, https://usegalaxy.org/published/workflow?id=9a1b4c9747bf6ae0, https://usegalaxy.org/published/workflow?id=9b5ae15bb9aaba48, https://usegalaxy.org/published/workflow?id=9bace540b35b1e61, https://usegalaxy.org/published/workflow?id=9bf1d223a57f88da, https://usegalaxy.org/published/workflow?id=9c688a2fc8d1bf4e, https://usegalaxy.org/published/workflow?id=9da9ddae8d5dc92f, https://usegalaxy.org/published/workflow?id=9db607d8d1cdcc25, https://usegalaxy.org/published/workflow?id=9ded318097694dbc, https://usegalaxy.org/published/workflow?id=9e74e3455e47c813, https://usegalaxy.org/published/workflow?id=9e9a027e0c294a79, https://usegalaxy.org/published/workflow?id=9eb29b71d7effefc, https://usegalaxy.org/published/workflow?id=9edc78f665579559, https://usegalaxy.org/published/workflow?id=9f1e8e82fb3e2033, https://usegalaxy.org/published/workflow?id=a0451d7084d7732b, https://usegalaxy.org/published/workflow?id=a0693c1cf1100a1a, https://usegalaxy.org/published/workflow?id=a164d857439a126f, https://usegalaxy.org/published/workflow?id=a17af8b7b2b39c1a, https://usegalaxy.org/published/workflow?id=a1ecf04e085b0cda, https://usegalaxy.org/published/workflow?id=a2046dd883227b49, https://usegalaxy.org/published/workflow?id=a4a56efb37d845bf, https://usegalaxy.org/published/workflow?id=a57a4249a8a21a6d, https://usegalaxy.org/published/workflow?id=a63d3ee4a2a4a20b, https://usegalaxy.org/published/workflow?id=a765dc267c6a5c3a, https://usegalaxy.org/published/workflow?id=a7ecb65025ad9c86, https://usegalaxy.org/published/workflow?id=a89008fccc1f1d17, https://usegalaxy.org/published/workflow?id=a8a38b594183db2b, https://usegalaxy.org/published/workflow?id=a8e5adb65d064641, https://usegalaxy.org/published/workflow?id=a8f633b79b20c760, https://usegalaxy.org/published/workflow?id=a986e4991fc61c92, https://usegalaxy.org/published/workflow?id=a98a3ac1a41752bc, https://usegalaxy.org/published/workflow?id=a99a938953be5fd6, https://usegalaxy.org/published/workflow?id=aae5b6d9beb860ba, https://usegalaxy.org/published/workflow?id=ac87b6133de6a03f, https://usegalaxy.org/published/workflow?id=acae55e8f37fea59, https://usegalaxy.org/published/workflow?id=ace738014a7278b0, https://usegalaxy.org/published/workflow?id=adb86df9061dca2b, https://usegalaxy.org/published/workflow?id=adbed5c956a71543, https://usegalaxy.org/published/workflow?id=ae1de4267e4da154, https://usegalaxy.org/published/workflow?id=ae523fe6c9183e58, https://usegalaxy.org/published/workflow?id=ae5327f6f30b6138, https://usegalaxy.org/published/workflow?id=af5d714396856e9a, https://usegalaxy.org/published/workflow?id=af71519c81429287, https://usegalaxy.org/published/workflow?id=afd7633a34d68704, https://usegalaxy.org/published/workflow?id=b0b6dfa166b0d873, https://usegalaxy.org/published/workflow?id=b19a9163c26f1270, https://usegalaxy.org/published/workflow?id=b1a98a2d5ebda1c5, https://usegalaxy.org/published/workflow?id=b1dc9cf054a63be5, https://usegalaxy.org/published/workflow?id=b232caf4a1e1b7ee, https://usegalaxy.org/published/workflow?id=b3026f28a45626a5, https://usegalaxy.org/published/workflow?id=b3c8d64eca750ecf, https://usegalaxy.org/published/workflow?id=b461ac6f18e0c9cf, https://usegalaxy.org/published/workflow?id=b5e8f4a0ff226921, https://usegalaxy.org/published/workflow?id=b63d1e1024cc3295, https://usegalaxy.org/published/workflow?id=b78a75ae89ae4c79, https://usegalaxy.org/published/workflow?id=b86d24a103181742, https://usegalaxy.org/published/workflow?id=b893662378ed3da0, https://usegalaxy.org/published/workflow?id=ba347b695dbff2ea, https://usegalaxy.org/published/workflow?id=ba5889301928907f, https://usegalaxy.org/published/workflow?id=bae2d6b436cd80ef, https://usegalaxy.org/published/workflow?id=bb25ac3ba4863424, https://usegalaxy.org/published/workflow?id=bb9e69ae66c3d916, https://usegalaxy.org/published/workflow?id=bbe958a8c0bf4955, https://usegalaxy.org/published/workflow?id=bcb798fb718968ce, https://usegalaxy.org/published/workflow?id=bceb6ae418bef9b8, https://usegalaxy.org/published/workflow?id=bd3bed78eb99e294, https://usegalaxy.org/published/workflow?id=bf3f71a748d88490, https://usegalaxy.org/published/workflow?id=bf90f2bd20fbff21, https://usegalaxy.org/published/workflow?id=c0746df296544a3a, https://usegalaxy.org/published/workflow?id=c092a3631d68ce38, https://usegalaxy.org/published/workflow?id=c0a108e53ab05b0d, https://usegalaxy.org/published/workflow?id=c11dfc3314e33b33, https://usegalaxy.org/published/workflow?id=c1339c998a55431c, https://usegalaxy.org/published/workflow?id=c156e67ad1ae4a97, https://usegalaxy.org/published/workflow?id=c1ec12905944ca7b, https://usegalaxy.org/published/workflow?id=c20a68563e80d401, https://usegalaxy.org/published/workflow?id=c2898d28a3b380d6, https://usegalaxy.org/published/workflow?id=c2c6779a8b1821e0, https://usegalaxy.org/published/workflow?id=c30bfd545ef3a228, https://usegalaxy.org/published/workflow?id=c332d1bbd62e139d, https://usegalaxy.org/published/workflow?id=c337e5265a8079d0, https://usegalaxy.org/published/workflow?id=c4ac09605633655c, https://usegalaxy.org/published/workflow?id=c4af6c5f5dfaae82, https://usegalaxy.org/published/workflow?id=c57f70d686b6062e, https://usegalaxy.org/published/workflow?id=c69f8c26ec5fb8a6, https://usegalaxy.org/published/workflow?id=c707871e1dc9e21d, https://usegalaxy.org/published/workflow?id=c712b85a55da2a2d, https://usegalaxy.org/published/workflow?id=c81833a367445f98, https://usegalaxy.org/published/workflow?id=c96b12be162f744b, https://usegalaxy.org/published/workflow?id=c9e442a395fc1a58, https://usegalaxy.org/published/workflow?id=ca36eebd59575df3, https://usegalaxy.org/published/workflow?id=cb011900fc0ee12a, https://usegalaxy.org/published/workflow?id=cbbd7e95041d9429, https://usegalaxy.org/published/workflow?id=cd4b5b62f1eed51b, https://usegalaxy.org/published/workflow?id=cd4d88429f096fbc, https://usegalaxy.org/published/workflow?id=cd5f803c80875b9c, https://usegalaxy.org/published/workflow?id=cd824d8631d6a55e, https://usegalaxy.org/published/workflow?id=cdea4f88ccbd155f, https://usegalaxy.org/published/workflow?id=ce232859a466c75c, https://usegalaxy.org/published/workflow?id=ce815d36cbb57304, https://usegalaxy.org/published/workflow?id=cf2dbc29ca20ebee, https://usegalaxy.org/published/workflow?id=cf3320614654adfe, https://usegalaxy.org/published/workflow?id=d00ac64dcd07f91a, https://usegalaxy.org/published/workflow?id=d196c3bde666eccb, https://usegalaxy.org/published/workflow?id=d2759906e4124964, https://usegalaxy.org/published/workflow?id=d3704f2927e3065e, https://usegalaxy.org/published/workflow?id=d3eae9943ce2a62b, https://usegalaxy.org/published/workflow?id=d4029ce1344e874a, https://usegalaxy.org/published/workflow?id=d43b771d93f0f609, https://usegalaxy.org/published/workflow?id=d5062ef48aa246d8, https://usegalaxy.org/published/workflow?id=d72e33effe07de02, https://usegalaxy.org/published/workflow?id=d768a4a06d3b1a90, https://usegalaxy.org/published/workflow?id=d7e14ff032a6ac4f, https://usegalaxy.org/published/workflow?id=d903c7215a88c79f, https://usegalaxy.org/published/workflow?id=d9840d6ecf2b4d2f, https://usegalaxy.org/published/workflow?id=db01ac5b0dc50cd4, https://usegalaxy.org/published/workflow?id=dbc650d226e89013, https://usegalaxy.org/published/workflow?id=dc006ebf798f1f2f, https://usegalaxy.org/published/workflow?id=dcc7c5fdef8780fd, https://usegalaxy.org/published/workflow?id=dcf658333596d76a, https://usegalaxy.org/published/workflow?id=dddd23119443b85e, https://usegalaxy.org/published/workflow?id=ddf222b797082436, https://usegalaxy.org/published/workflow?id=de208a900880dcdc, https://usegalaxy.org/published/workflow?id=de24e5678f541584, https://usegalaxy.org/published/workflow?id=de2861cdbd4e29ce, https://usegalaxy.org/published/workflow?id=de29cd965a2e93d3, https://usegalaxy.org/published/workflow?id=defd6fc845bb960c, https://usegalaxy.org/published/workflow?id=df24d76ebf13e3c1, https://usegalaxy.org/published/workflow?id=df6b9760e071b91b, https://usegalaxy.org/published/workflow?id=df6c398b2d4f1e99, https://usegalaxy.org/published/workflow?id=df8b49863e83824d, https://usegalaxy.org/published/workflow?id=dff3cf6921b3d4d6, https://usegalaxy.org/published/workflow?id=e04f443a8ceca0d2, https://usegalaxy.org/published/workflow?id=e0c33057ac2670ba, https://usegalaxy.org/published/workflow?id=e0ec503626fa0d58, https://usegalaxy.org/published/workflow?id=e12296df7cf33c69, https://usegalaxy.org/published/workflow?id=e1aad86fdf9e6616, https://usegalaxy.org/published/workflow?id=e2c77aeabb8053b4, https://usegalaxy.org/published/workflow?id=e42a07b777c9f9dc, https://usegalaxy.org/published/workflow?id=e4d260d46b516b4f, https://usegalaxy.org/published/workflow?id=e58a87508a337b91, https://usegalaxy.org/published/workflow?id=e5f79f576548f7c5, https://usegalaxy.org/published/workflow?id=e6b48a02789d1879, https://usegalaxy.org/published/workflow?id=e7586d70715207b5, https://usegalaxy.org/published/workflow?id=e7fa48d7fd40908b, https://usegalaxy.org/published/workflow?id=e899acc664c8b808, https://usegalaxy.org/published/workflow?id=e9927c058ec0661f, https://usegalaxy.org/published/workflow?id=e9f4de639f4cfe02, https://usegalaxy.org/published/workflow?id=e9ffad95baa43478, https://usegalaxy.org/published/workflow?id=ea105a8775a56837, https://usegalaxy.org/published/workflow?id=ea248022a4217e0e, https://usegalaxy.org/published/workflow?id=ea4c2defce2f5258, https://usegalaxy.org/published/workflow?id=ea5d2401f6711dff, https://usegalaxy.org/published/workflow?id=ea61cd21e3fbad2b, https://usegalaxy.org/published/workflow?id=eafe4aa62a600e1d, https://usegalaxy.org/published/workflow?id=eb4b32fcf4a9f64a, https://usegalaxy.org/published/workflow?id=ec2f77224324f22e, https://usegalaxy.org/published/workflow?id=ec66767cab0022ee, https://usegalaxy.org/published/workflow?id=ecb279a9114140ab, https://usegalaxy.org/published/workflow?id=edf9be785ab9eb65, https://usegalaxy.org/published/workflow?id=ee27581327d147da, https://usegalaxy.org/published/workflow?id=ee3b8d7ba29da11c, https://usegalaxy.org/published/workflow?id=eedbd4e9caca6195, https://usegalaxy.org/published/workflow?id=ef2c1fb7d6a51b3a, https://usegalaxy.org/published/workflow?id=efe7ca87323773c0, https://usegalaxy.org/published/workflow?id=f062eda543541ba8, https://usegalaxy.org/published/workflow?id=f0ee8bcd7c8fadca, https://usegalaxy.org/published/workflow?id=f18946db4c93e88b, https://usegalaxy.org/published/workflow?id=f1c2d920bd41cebb, https://usegalaxy.org/published/workflow?id=f29d1bcfeaacba04, https://usegalaxy.org/published/workflow?id=f2d3abc6c45c4839, https://usegalaxy.org/published/workflow?id=f3b417763495221b, https://usegalaxy.org/published/workflow?id=f4ed1c9434ed0445, https://usegalaxy.org/published/workflow?id=f5805e66642fed04, https://usegalaxy.org/published/workflow?id=f5bd2da36ab0a870, https://usegalaxy.org/published/workflow?id=f733ad0a6cc50cb9, https://usegalaxy.org/published/workflow?id=f765c8aa4bc3176c, https://usegalaxy.org/published/workflow?id=f7975ae799daf463, https://usegalaxy.org/published/workflow?id=f93b5864d6d2659c, https://usegalaxy.org/published/workflow?id=f9cd2289c007f103, https://usegalaxy.org/published/workflow?id=f9d546aae406cf15, https://usegalaxy.org/published/workflow?id=fa226c044fa026ef, https://usegalaxy.org/published/workflow?id=fb588edfd343b24d, https://usegalaxy.org/published/workflow?id=fc130cb411aa7d06, https://usegalaxy.org/published/workflow?id=fcae9dfcdca70798, https://usegalaxy.org/published/workflow?id=fcbd4767298488b9, https://usegalaxy.org/published/workflow?id=fcbe12fc4eaae12e, https://usegalaxy.org/published/workflow?id=fce1837144d3a86e, https://usegalaxy.org/published/workflow?id=fd30cdfe7e38b508, https://usegalaxy.org/published/workflow?id=fd75347cfea06651, https://usegalaxy.org/published/workflow?id=fe2d15d352a9919f, https://usegalaxy.org/published/workflow?id=fe4c2791508c56ab, https://workflowhub.eu/workflows/112?version=6, https://workflowhub.eu/workflows/1352?version=3, https://workflowhub.eu/workflows/1390?version=2, https://workflowhub.eu/workflows/1480?version=1, https://workflowhub.eu/workflows/1488?version=1, https://workflowhub.eu/workflows/1562?version=1, https://workflowhub.eu/workflows/1568?version=1, https://workflowhub.eu/workflows/1612?version=1, https://workflowhub.eu/workflows/1615?version=1, https://workflowhub.eu/workflows/1616?version=1, https://workflowhub.eu/workflows/1619?version=1, https://workflowhub.eu/workflows/1629?version=1, https://workflowhub.eu/workflows/1631?version=1, https://workflowhub.eu/workflows/1634?version=1, https://workflowhub.eu/workflows/1657?version=1, https://workflowhub.eu/workflows/1661?version=1, https://workflowhub.eu/workflows/338?version=1, https://workflowhub.eu/workflows/35?version=1, https://workflowhub.eu/workflows/36?version=1, https://workflowhub.eu/workflows/394?version=1, https://workflowhub.eu/workflows/395?version=15, https://workflowhub.eu/workflows/397?version=14, https://workflowhub.eu/workflows/398?version=15, https://workflowhub.eu/workflows/399?version=19, https://workflowhub.eu/workflows/412?version=1, https://workflowhub.eu/workflows/68?version=1 |
assembly/assembly-with-preprocessing, assembly/metagenomics-assembly, contributing/create-new-tutorial, epigenetics/atac-seq, epigenetics/cut_and_run, epigenetics/estrogen-receptor-binding-site-identification, epigenetics/formation_of_super-structures_on_xi, genome-annotation/amr-gene-detection, microbiome/metagenomics-assembly, sequence-analysis/mapping |
|
bp_genbank2gff3 |
bp_genbank2gff3 |
Converts GenBank format files to GFF3 |
2015-08-14 |
https://bioperl.org/ |
1.1 |
perl-bioperl |
1.7.8 |
To update |
Sequence Analysis |
Data handling, Service invocation |
Data handling, Service invocation |
Genomics, Software engineering, Data management |
Genomics, Software engineering |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/bioperl |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bioperl |
bioperl |
BioPerl |
A collection of Perl modules that facilitate the development of Perl scripts for bioinformatics applications. It provides software modules for many of the typical tasks of bioinformatics programming. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
536 |
581 |
7942 |
8735 |
928 |
928 |
10508 |
10512 |
170 |
178 |
8949 |
8990 |
18 |
18 |
223 |
223 |
28460 |
27622 |
1705 |
1652 |
|
genome-annotation/secondary-metabolite-discovery |
|
bracken |
est_abundance |
Bayesian Reestimation of Abundance with KrakEN |
2019-10-15 |
https://github.com/jenniferlu717/Bracken/releases |
3.1 |
bracken |
3.1 |
Up-to-date |
Sequence Analysis, Metagenomics |
Statistical calculation |
Statistical calculation |
Metagenomics, Microbial ecology |
Metagenomics, Microbial ecology |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bracken |
bracken |
Bracken |
Bracken is a companion program to Kraken 1, KrakenUniq, or Kraken 2 While Kraken classifies reads to multiple levels in the taxonomic tree, Bracken allows estimation of abundance at a single level using those classifications (e.g. Bracken can estimate abundance of species within a sample). |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
1070 |
1070 |
79390 |
79390 |
416 |
416 |
17034 |
17034 |
137 |
137 |
3009 |
3009 |
32 |
32 |
4896 |
4896 |
104329 |
104329 |
1655 |
1655 |
https://dev.workflowhub.eu/workflows/1095?version=1, https://dev.workflowhub.eu/workflows/1217?version=2, https://dev.workflowhub.eu/workflows/1344?version=1, https://usegalaxy.eu/published/workflow?id=0a82eb8b44d9d502, https://usegalaxy.eu/published/workflow?id=0abd32dbc5207b88, https://usegalaxy.eu/published/workflow?id=0c47571d20535426, https://usegalaxy.eu/published/workflow?id=2fa2f67603772413, https://usegalaxy.eu/published/workflow?id=39d36a7ce0ef268d, https://usegalaxy.eu/published/workflow?id=47e14222073e7192, https://usegalaxy.eu/published/workflow?id=4f0daf8e9dd54127, https://usegalaxy.eu/published/workflow?id=884a4415b669690c, https://usegalaxy.eu/published/workflow?id=aafcfcb585c5ca75, https://usegalaxy.eu/published/workflow?id=b14845359b702444, https://usegalaxy.eu/published/workflow?id=bb63b5bb983fd49c, https://usegalaxy.eu/published/workflow?id=c14d2e8b3c191bc4, https://usegalaxy.eu/published/workflow?id=c930a54a30dcc7e3, https://usegalaxy.eu/published/workflow?id=cb2df493f5e334f7, https://usegalaxy.eu/published/workflow?id=ebb131f2a6172081, https://usegalaxy.fr/published/workflow?id=3d3b40398d1cd1ae, https://usegalaxy.org.au/published/workflow?id=92fcdd490831c6c5, https://usegalaxy.org.au/published/workflow?id=a335b9c9103b57ad, https://usegalaxy.org/published/workflow?id=1be5c982c2d36a6c, https://usegalaxy.org/published/workflow?id=2a782ad24271f570, https://usegalaxy.org/published/workflow?id=323c651ca583c9e5, https://usegalaxy.org/published/workflow?id=4f698eaeef30e364, https://usegalaxy.org/published/workflow?id=623fc80c7f91a33a, https://usegalaxy.org/published/workflow?id=9f68718f025bed30, https://usegalaxy.org/published/workflow?id=b6a795834009ce06, https://usegalaxy.org/published/workflow?id=de9bf4c1024f8d53, https://usegalaxy.org/published/workflow?id=dfd73857c0eb2a21, https://usegalaxy.org/published/workflow?id=f378960ee55f567e, https://workflowhub.eu/workflows/1052?version=11, https://workflowhub.eu/workflows/1199?version=2, https://workflowhub.eu/workflows/1470?version=1, https://workflowhub.eu/workflows/1644?version=1, https://workflowhub.eu/workflows/1674?version=1 |
ecology/bacterial-isolate-species-contamination-checking, microbiome/taxonomic-profiling, sequence-analysis/quality-contamination-control |
|
breseq |
breseq |
Predicts mutations in microbial genomes |
2019-10-21 |
https://github.com/barricklab/breseq |
0.35.5 |
breseq |
0.39.0 |
To update |
Variant Analysis |
Polymorphism detection |
Polymorphism detection |
Sequencing, Sequence analysis, DNA mutation |
Sequencing, Sequence analysis, DNA mutation |
iuc |
|
https://github.com/galaxyproject/tools-iuc/tree/main/tools/breseq |
breseq |
breseq |
Runs Breseq software on a set of fastq files. |
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
132 |
132 |
3271 |
3271 |
0 |
0 |
0 |
0 |
74 |
75 |
927 |
932 |
0 |
0 |
0 |
0 |
4203 |
4198 |
207 |
206 |
|
|
|
brew3r_r |
brew3r_r |
Extend 3' end of a GTF using another GTF as a template |
2024-06-11 |
https://bioconductor.org/packages/release/bioc/html/BREW3R.r.html |
1.0.2 |
|
|
To update |
Transcriptomics, RNA |
Genome annotation |
Genome annotation |
Transcriptomics, Genomics |
Transcriptomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/brew3r_r |
brew3r.r |
BREW3R.r |
This R package provide functions that are used in the BREW3R workflow. This mainly contains a function that extend a gtf as GRanges using information from another gtf (also as GRanges). The process allows to extend gene annotation without increasing the overlap between gene ids. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
6 |
6 |
2 |
2 |
6 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
12 |
6 |
6 |
https://usegalaxy.eu/published/workflow?id=a6d36048d545bca7, https://usegalaxy.eu/published/workflow?id=efe6d8a65226505e, https://usegalaxy.org/published/workflow?id=38f06c4c6dd4eb62, https://usegalaxy.org/published/workflow?id=5a5d0dc4cd2f1ebd, https://workflowhub.eu/workflows/1051?version=2 |
|
|
busco |
busco |
BUSCO assess genome and annotation completeness |
2017-01-12 |
https://gitlab.com/ezlab/busco/-/releases |
5.8.0 |
busco |
6.0.0 |
To update |
Sequence Analysis |
Sequence assembly validation |
Sequence assembly validation |
Sequence assembly, Genomics, Transcriptomics, Sequence analysis |
Sequence assembly, Transcriptomics, Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/busco |
busco |
BUSCO |
Provides measures for quantitative assessment of genome assembly, gene set, and transcriptome completeness based on evolutionarily informed expectations of gene content from near-universal single-copy orthologs. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
4430 |
4523 |
115561 |
116583 |
4223 |
4223 |
43139 |
43139 |
2655 |
2761 |
41157 |
42702 |
224 |
224 |
7080 |
7086 |
209510 |
206937 |
11731 |
11532 |
https://dev.workflowhub.eu/workflows/1002?version=1, https://dev.workflowhub.eu/workflows/1004?version=1, https://dev.workflowhub.eu/workflows/1006?version=1, https://dev.workflowhub.eu/workflows/1127?version=3, https://dev.workflowhub.eu/workflows/1128?version=1, https://dev.workflowhub.eu/workflows/1131?version=2, https://dev.workflowhub.eu/workflows/1158?version=2, https://dev.workflowhub.eu/workflows/1164?version=2, https://dev.workflowhub.eu/workflows/1187?version=2, https://dev.workflowhub.eu/workflows/1194?version=2, https://dev.workflowhub.eu/workflows/1202?version=1, https://dev.workflowhub.eu/workflows/1264?version=2, https://dev.workflowhub.eu/workflows/1358?version=2, https://usegalaxy.cz/published/workflow?id=932f4901960a595a, https://usegalaxy.eu/published/workflow?id=002a51bdef00e14d, https://usegalaxy.eu/published/workflow?id=007ce6405d196df3, https://usegalaxy.eu/published/workflow?id=01fe4c590e608103, https://usegalaxy.eu/published/workflow?id=023a0ee62dd1f593, https://usegalaxy.eu/published/workflow?id=032a7281a86eba0d, https://usegalaxy.eu/published/workflow?id=03bb4c20a1f4b4de, https://usegalaxy.eu/published/workflow?id=03be9d62e8e4a129, https://usegalaxy.eu/published/workflow?id=0444c98a3ca2a3ca, https://usegalaxy.eu/published/workflow?id=069d99391a69baf4, https://usegalaxy.eu/published/workflow?id=085c3a4c89d137b5, https://usegalaxy.eu/published/workflow?id=089e5e83b1de0511, https://usegalaxy.eu/published/workflow?id=0a3ebee985c26060, https://usegalaxy.eu/published/workflow?id=0c3ce9feb83f7920, https://usegalaxy.eu/published/workflow?id=0cf3c2114ab65858, https://usegalaxy.eu/published/workflow?id=0f207a15b6f7fa10, https://usegalaxy.eu/published/workflow?id=1151052f4393852a, https://usegalaxy.eu/published/workflow?id=12b0bd336c76a874, https://usegalaxy.eu/published/workflow?id=1483534f49b826bf, https://usegalaxy.eu/published/workflow?id=165089132248a0b0, https://usegalaxy.eu/published/workflow?id=194a05d42687b524, https://usegalaxy.eu/published/workflow?id=19bb57f8cfa48bb9, https://usegalaxy.eu/published/workflow?id=1ac0a15758277730, https://usegalaxy.eu/published/workflow?id=1af73dc855d0a5ed, https://usegalaxy.eu/published/workflow?id=1bb084f1bc102734, https://usegalaxy.eu/published/workflow?id=1d1ae39386b5c318, https://usegalaxy.eu/published/workflow?id=1da7ac8eaf891f39, https://usegalaxy.eu/published/workflow?id=1e02a7292e9974b1, https://usegalaxy.eu/published/workflow?id=1e7f4ba6261f979c, https://usegalaxy.eu/published/workflow?id=1f2a1438e41188f2, https://usegalaxy.eu/published/workflow?id=21a3f72851f29925, https://usegalaxy.eu/published/workflow?id=2294ef9515bcf972, https://usegalaxy.eu/published/workflow?id=2671a5f85b2cccfe, https://usegalaxy.eu/published/workflow?id=26ad77bc07a7e512, https://usegalaxy.eu/published/workflow?id=270b6f82efab28b2, https://usegalaxy.eu/published/workflow?id=29c97d43eeb8ed63, https://usegalaxy.eu/published/workflow?id=2e418c5810012e5a, https://usegalaxy.eu/published/workflow?id=3010ecad1a342331, https://usegalaxy.eu/published/workflow?id=3069c17b52decab4, https://usegalaxy.eu/published/workflow?id=30b514cfb9cce524, https://usegalaxy.eu/published/workflow?id=3192f92ac4d389b8, https://usegalaxy.eu/published/workflow?id=31bc2a44fb89aa89, https://usegalaxy.eu/published/workflow?id=31f8c7c46207432f, https://usegalaxy.eu/published/workflow?id=327beb1edda305ff, https://usegalaxy.eu/published/workflow?id=342a5df69951e3d7, https://usegalaxy.eu/published/workflow?id=379642036b6f5a66, https://usegalaxy.eu/published/workflow?id=399048afb4acef3d, https://usegalaxy.eu/published/workflow?id=3a3e2d50fe7a9ee3, https://usegalaxy.eu/published/workflow?id=3b57fc81001667b5, https://usegalaxy.eu/published/workflow?id=3d604dad4f1f5b3d, https://usegalaxy.eu/published/workflow?id=3e255a5b7026d26e, https://usegalaxy.eu/published/workflow?id=3eb6663a66f8e69a, https://usegalaxy.eu/published/workflow?id=3f5414bb38b47fcf, https://usegalaxy.eu/published/workflow?id=4077e77b6af919c4, https://usegalaxy.eu/published/workflow?id=416141b245073406, https://usegalaxy.eu/published/workflow?id=44c92c04f1d14631, https://usegalaxy.eu/published/workflow?id=471eb8b4c54f897d, https://usegalaxy.eu/published/workflow?id=475ea16f943cc013, https://usegalaxy.eu/published/workflow?id=4856e3522b2ee059, https://usegalaxy.eu/published/workflow?id=4949751217c0e211, https://usegalaxy.eu/published/workflow?id=497b82d3b92dc076, https://usegalaxy.eu/published/workflow?id=4c3a9b574f37eebb, https://usegalaxy.eu/published/workflow?id=4d41ee83fc0040d4, https://usegalaxy.eu/published/workflow?id=5115299e77df8104, https://usegalaxy.eu/published/workflow?id=5395e76fa828c343, https://usegalaxy.eu/published/workflow?id=54590ccd11ffbf65, https://usegalaxy.eu/published/workflow?id=57cc33ed64d71982, https://usegalaxy.eu/published/workflow?id=5ad406442ec21345, https://usegalaxy.eu/published/workflow?id=5bf6718e7d6158d2, https://usegalaxy.eu/published/workflow?id=5e1906290f5b4d8a, https://usegalaxy.eu/published/workflow?id=652433160b04b232, https://usegalaxy.eu/published/workflow?id=6573f3b1606b7f09, https://usegalaxy.eu/published/workflow?id=6865f33cffca4922, https://usegalaxy.eu/published/workflow?id=6984990d0ac2e1e6, https://usegalaxy.eu/published/workflow?id=69cdd404592535ec, https://usegalaxy.eu/published/workflow?id=6c14b08a7ef7e79a, https://usegalaxy.eu/published/workflow?id=6ca20e710f4f3ffb, https://usegalaxy.eu/published/workflow?id=700fa3ab11a8f3e2, https://usegalaxy.eu/published/workflow?id=71a6d128a09210f0, https://usegalaxy.eu/published/workflow?id=7337d15d121596da, https://usegalaxy.eu/published/workflow?id=792b24fc23bd3071, https://usegalaxy.eu/published/workflow?id=79b5afb125e3c3da, https://usegalaxy.eu/published/workflow?id=7b4a9aebb09b51ca, https://usegalaxy.eu/published/workflow?id=7e383fe34031a9d0, https://usegalaxy.eu/published/workflow?id=7e68cf8a67efa8e9, https://usegalaxy.eu/published/workflow?id=83a1b8949d87e3da, https://usegalaxy.eu/published/workflow?id=84236d781f7dd2ad, https://usegalaxy.eu/published/workflow?id=847403b72dd346ff, https://usegalaxy.eu/published/workflow?id=88f80a31e3ff8663, https://usegalaxy.eu/published/workflow?id=8976041ef89e4548, https://usegalaxy.eu/published/workflow?id=8be366ad6a42408b, https://usegalaxy.eu/published/workflow?id=8f105de48f7f1d9d, https://usegalaxy.eu/published/workflow?id=915ffef5b14c871e, https://usegalaxy.eu/published/workflow?id=92760fc19ef120ce, https://usegalaxy.eu/published/workflow?id=92dafb3d1c06e074, https://usegalaxy.eu/published/workflow?id=95f420d8856bf725, https://usegalaxy.eu/published/workflow?id=9667bf36217083b7, https://usegalaxy.eu/published/workflow?id=9c0b67496dfe52b2, https://usegalaxy.eu/published/workflow?id=9d209bcdae1a475e, https://usegalaxy.eu/published/workflow?id=9f2d18f0d0896e8b, https://usegalaxy.eu/published/workflow?id=a2daeb488bee0152, https://usegalaxy.eu/published/workflow?id=a37d1e0db16cfb67, https://usegalaxy.eu/published/workflow?id=a3f082ff30357040, https://usegalaxy.eu/published/workflow?id=a53f78aa6866b811, https://usegalaxy.eu/published/workflow?id=a6dd62ab4b9a0725, https://usegalaxy.eu/published/workflow?id=aa6dc57f5c67fb4b, https://usegalaxy.eu/published/workflow?id=ac6eb99f70d35999, https://usegalaxy.eu/published/workflow?id=ade6f36f6a035a73, https://usegalaxy.eu/published/workflow?id=ae74f60cd20d56bc, https://usegalaxy.eu/published/workflow?id=aef62f4d0bba003b, https://usegalaxy.eu/published/workflow?id=b211fceaecf41c9e, https://usegalaxy.eu/published/workflow?id=b287bb779cf686ef, https://usegalaxy.eu/published/workflow?id=b4948afacccfefdb, https://usegalaxy.eu/published/workflow?id=b5de94e9cde071ab, https://usegalaxy.eu/published/workflow?id=b8baade87e733fce, https://usegalaxy.eu/published/workflow?id=bac84a7033c3423f, https://usegalaxy.eu/published/workflow?id=bc32937d505135ab, https://usegalaxy.eu/published/workflow?id=bc87309a8763d0b4, https://usegalaxy.eu/published/workflow?id=bc8ccd13a07bd9ec, https://usegalaxy.eu/published/workflow?id=bcf99cc0469db276, https://usegalaxy.eu/published/workflow?id=bef0a7d604f2ebef, https://usegalaxy.eu/published/workflow?id=bf48b0eb15e8ff75, https://usegalaxy.eu/published/workflow?id=c4c2e669b86cffbc, https://usegalaxy.eu/published/workflow?id=c508c00e81018dd8, https://usegalaxy.eu/published/workflow?id=c8f94a2e838fc0f1, https://usegalaxy.eu/published/workflow?id=c9a8fba4c56f5c83, https://usegalaxy.eu/published/workflow?id=ca39822372847670, https://usegalaxy.eu/published/workflow?id=cab2aa791a814d55, https://usegalaxy.eu/published/workflow?id=caba6d3d7db648e9, https://usegalaxy.eu/published/workflow?id=cf8591391a17a914, https://usegalaxy.eu/published/workflow?id=d02458f1d7d9c3f4, https://usegalaxy.eu/published/workflow?id=d172f927a489e9f8, https://usegalaxy.eu/published/workflow?id=d17d6029914d666b, https://usegalaxy.eu/published/workflow?id=d1bd5d8597c1d31d, https://usegalaxy.eu/published/workflow?id=d261bbd05889ce75, https://usegalaxy.eu/published/workflow?id=d649ec485c4b3994, https://usegalaxy.eu/published/workflow?id=d67299c34e63f3d9, https://usegalaxy.eu/published/workflow?id=d924fafd8e042952, https://usegalaxy.eu/published/workflow?id=dc27453c438577f6, https://usegalaxy.eu/published/workflow?id=de9cf573314f416c, https://usegalaxy.eu/published/workflow?id=e138640778b7414c, https://usegalaxy.eu/published/workflow?id=e7aebe58411d97ed, https://usegalaxy.eu/published/workflow?id=e8eb80ee09159bac, https://usegalaxy.eu/published/workflow?id=e8f9e1d911683b22, https://usegalaxy.eu/published/workflow?id=e935d2c8ffb52588, https://usegalaxy.eu/published/workflow?id=ec79f14ab91cd933, https://usegalaxy.eu/published/workflow?id=f08b29e4cef76cd5, https://usegalaxy.eu/published/workflow?id=f1ca4289ee4f67bb, https://usegalaxy.eu/published/workflow?id=f38745208494d4ab, https://usegalaxy.eu/published/workflow?id=f3e17c8dd80def27, https://usegalaxy.eu/published/workflow?id=f578a097b4339025, https://usegalaxy.eu/published/workflow?id=f63127675a07e00a, https://usegalaxy.eu/published/workflow?id=f6a625946dea60fa, https://usegalaxy.eu/published/workflow?id=f7cdaf862e6599c0, https://usegalaxy.eu/published/workflow?id=f882d14fc5dabbb9, https://usegalaxy.eu/published/workflow?id=f91245e580319e65, https://usegalaxy.eu/published/workflow?id=fb015e398373ea8a, https://usegalaxy.eu/published/workflow?id=fba1671d835b6dd3, https://usegalaxy.eu/published/workflow?id=fc25c1f8c6667c87, https://usegalaxy.eu/published/workflow?id=fd649ac4d4872c81, https://usegalaxy.eu/published/workflow?id=fe43cf59e48bf556, https://usegalaxy.eu/published/workflow?id=feeb1fa358ccf328, https://usegalaxy.fr/published/workflow?id=ae05ff8487f58fd6, https://usegalaxy.org.au/published/workflow?id=000c2f1884bc4687, https://usegalaxy.org.au/published/workflow?id=02c74095a7128c9d, https://usegalaxy.org.au/published/workflow?id=02eebe3d909206ab, https://usegalaxy.org.au/published/workflow?id=06564b19b0655c19, https://usegalaxy.org.au/published/workflow?id=0810be3d7d2b0322, https://usegalaxy.org.au/published/workflow?id=08fac3b4c128e597, https://usegalaxy.org.au/published/workflow?id=0a3fb089674de144, https://usegalaxy.org.au/published/workflow?id=0aa316f8c6cff444, https://usegalaxy.org.au/published/workflow?id=0af0ea50f1237952, https://usegalaxy.org.au/published/workflow?id=0c11e1ba5e8fa21b, https://usegalaxy.org.au/published/workflow?id=0cc8c8875df6bccb, https://usegalaxy.org.au/published/workflow?id=0dbb85f727302a72, https://usegalaxy.org.au/published/workflow?id=0df25e2dbd5e8ed5, https://usegalaxy.org.au/published/workflow?id=10355b2680374a03, https://usegalaxy.org.au/published/workflow?id=1905ec04d5841f09, https://usegalaxy.org.au/published/workflow?id=1ce2a725df3adb74, https://usegalaxy.org.au/published/workflow?id=1dcc1b25c9091fbf, https://usegalaxy.org.au/published/workflow?id=1eb3e1452c672480, https://usegalaxy.org.au/published/workflow?id=1f49c65625b9d2de, https://usegalaxy.org.au/published/workflow?id=2356584eac7fa234, https://usegalaxy.org.au/published/workflow?id=243c67fa4312855e, https://usegalaxy.org.au/published/workflow?id=2470cb61ba51288c, https://usegalaxy.org.au/published/workflow?id=29f0c07c8a24b542, https://usegalaxy.org.au/published/workflow?id=2d45d7138d8715b4, https://usegalaxy.org.au/published/workflow?id=319e9d693fac8dce, https://usegalaxy.org.au/published/workflow?id=328adfa7d90b1d54, https://usegalaxy.org.au/published/workflow?id=35f39173f0ac9179, https://usegalaxy.org.au/published/workflow?id=3604307ec2835628, https://usegalaxy.org.au/published/workflow?id=36f54eda8568355d, https://usegalaxy.org.au/published/workflow?id=371c9892d261cee2, https://usegalaxy.org.au/published/workflow?id=3b6e9f03b088bf01, https://usegalaxy.org.au/published/workflow?id=3df7f45b7b388f8c, https://usegalaxy.org.au/published/workflow?id=4023bca282ca9315, https://usegalaxy.org.au/published/workflow?id=40666ceb68d101ac, https://usegalaxy.org.au/published/workflow?id=40740c32b9a550c9, https://usegalaxy.org.au/published/workflow?id=41282d51f9112552, https://usegalaxy.org.au/published/workflow?id=41795303a88d9e94, https://usegalaxy.org.au/published/workflow?id=4267bd1e4cfd1901, https://usegalaxy.org.au/published/workflow?id=434127690544d0e9, https://usegalaxy.org.au/published/workflow?id=455e68f185fec41b, https://usegalaxy.org.au/published/workflow?id=466809eb3392f7fb, https://usegalaxy.org.au/published/workflow?id=478c79365fc9677f, https://usegalaxy.org.au/published/workflow?id=49b253f75ab6f38f, https://usegalaxy.org.au/published/workflow?id=4cb69c84b73ea9dd, https://usegalaxy.org.au/published/workflow?id=4e161a8f5098cc49, https://usegalaxy.org.au/published/workflow?id=4e7930c7286c6e9e, https://usegalaxy.org.au/published/workflow?id=4ea1049371de111c, https://usegalaxy.org.au/published/workflow?id=4ebf1297793870e7, https://usegalaxy.org.au/published/workflow?id=51bad198f1fd1215, https://usegalaxy.org.au/published/workflow?id=543fb2d9431a7e13, https://usegalaxy.org.au/published/workflow?id=5550585ffc3d8d0e, https://usegalaxy.org.au/published/workflow?id=5b0c0e34394afed1, https://usegalaxy.org.au/published/workflow?id=5cd804644a34c8fd, https://usegalaxy.org.au/published/workflow?id=5f4f874e49515555, https://usegalaxy.org.au/published/workflow?id=60c0dec52cdca708, https://usegalaxy.org.au/published/workflow?id=63789b6f82172679, https://usegalaxy.org.au/published/workflow?id=68b2961117e62890, https://usegalaxy.org.au/published/workflow?id=6c1c11a81a2ab1b8, https://usegalaxy.org.au/published/workflow?id=6c27019d03dd49d8, https://usegalaxy.org.au/published/workflow?id=6c9129acb9d98afe, https://usegalaxy.org.au/published/workflow?id=6de8899c40a90b98, https://usegalaxy.org.au/published/workflow?id=6ec5728eec9c26d7, https://usegalaxy.org.au/published/workflow?id=6f76c43e6d2d7f74, https://usegalaxy.org.au/published/workflow?id=7028436ef03171cc, https://usegalaxy.org.au/published/workflow?id=7168c01be9997823, https://usegalaxy.org.au/published/workflow?id=77b2fcf8c805ad5d, https://usegalaxy.org.au/published/workflow?id=7909da83448d8bf4, https://usegalaxy.org.au/published/workflow?id=79bf7b0f5e9052d7, https://usegalaxy.org.au/published/workflow?id=7a97e8ccc332c1e8, https://usegalaxy.org.au/published/workflow?id=7e40485d1ed45b7c, https://usegalaxy.org.au/published/workflow?id=7f37c5366bce5489, https://usegalaxy.org.au/published/workflow?id=81a5b96452c71a52, https://usegalaxy.org.au/published/workflow?id=82d0876385b5ac60, https://usegalaxy.org.au/published/workflow?id=868775ef66d174a5, https://usegalaxy.org.au/published/workflow?id=86eb0ea9dc230f04, https://usegalaxy.org.au/published/workflow?id=8926e592f2e60863, https://usegalaxy.org.au/published/workflow?id=8a40059343cf4b87, https://usegalaxy.org.au/published/workflow?id=8a6233015db6dd24, https://usegalaxy.org.au/published/workflow?id=8bf8c9929249f37d, https://usegalaxy.org.au/published/workflow?id=8dd86497bc15d981, https://usegalaxy.org.au/published/workflow?id=8e8a5cce9f3f2f67, https://usegalaxy.org.au/published/workflow?id=91ee716be8bfd508, https://usegalaxy.org.au/published/workflow?id=9642aadb83c4f752, https://usegalaxy.org.au/published/workflow?id=970dc0d8bd74707f, https://usegalaxy.org.au/published/workflow?id=9804030358c3f844, https://usegalaxy.org.au/published/workflow?id=98d3def7da131b4c, https://usegalaxy.org.au/published/workflow?id=98f660971010d11d, https://usegalaxy.org.au/published/workflow?id=9e0bae0505ee7c07, https://usegalaxy.org.au/published/workflow?id=a02c102e179596cb, https://usegalaxy.org.au/published/workflow?id=a1015b83baa0eb6d, https://usegalaxy.org.au/published/workflow?id=a209f43d8a3cc853, https://usegalaxy.org.au/published/workflow?id=a345bf84eb9bf6b2, https://usegalaxy.org.au/published/workflow?id=a40dadc943a0db1e, https://usegalaxy.org.au/published/workflow?id=a525966251895f8a, https://usegalaxy.org.au/published/workflow?id=a740543c4e9808f1, https://usegalaxy.org.au/published/workflow?id=ac8bdc5a0b2d70cd, https://usegalaxy.org.au/published/workflow?id=ad10cd704268dcf0, https://usegalaxy.org.au/published/workflow?id=ae2a397837b232b1, https://usegalaxy.org.au/published/workflow?id=ae6a03240680712a, https://usegalaxy.org.au/published/workflow?id=afab89bc468da8b3, https://usegalaxy.org.au/published/workflow?id=b19fa49405117317, https://usegalaxy.org.au/published/workflow?id=b1f45d2f8d8343e9, https://usegalaxy.org.au/published/workflow?id=b310af289ada88bc, https://usegalaxy.org.au/published/workflow?id=b5131e3a0ef2676e, https://usegalaxy.org.au/published/workflow?id=b53f82aaf32fbaa9, https://usegalaxy.org.au/published/workflow?id=b7aa22291322e505, https://usegalaxy.org.au/published/workflow?id=b9e89401313a0cca, https://usegalaxy.org.au/published/workflow?id=b9faf6a3f48fc11b, https://usegalaxy.org.au/published/workflow?id=be35847680078c90, https://usegalaxy.org.au/published/workflow?id=be96bb47b6d6435a, https://usegalaxy.org.au/published/workflow?id=c04a62f528a69e79, https://usegalaxy.org.au/published/workflow?id=c556c2270200801d, https://usegalaxy.org.au/published/workflow?id=c6a71573a299eb3a, https://usegalaxy.org.au/published/workflow?id=c7e1f666a3366823, https://usegalaxy.org.au/published/workflow?id=c7f2d6490128dc3c, https://usegalaxy.org.au/published/workflow?id=c853aa707fcddf4e, https://usegalaxy.org.au/published/workflow?id=cac0b8a09d59044b, https://usegalaxy.org.au/published/workflow?id=cbf022e349d726d9, https://usegalaxy.org.au/published/workflow?id=d06665e4bc7fff6d, https://usegalaxy.org.au/published/workflow?id=d298edda13b382e7, https://usegalaxy.org.au/published/workflow?id=d42d7b1aa47e870f, https://usegalaxy.org.au/published/workflow?id=d7f3fc810261e419, https://usegalaxy.org.au/published/workflow?id=d83d5ecf31c20490, https://usegalaxy.org.au/published/workflow?id=d957bfeb3cd03db0, https://usegalaxy.org.au/published/workflow?id=d9c181fd954b629a, https://usegalaxy.org.au/published/workflow?id=df11f09771e73e04, https://usegalaxy.org.au/published/workflow?id=df4e186069552649, https://usegalaxy.org.au/published/workflow?id=e031af90daa2cadf, https://usegalaxy.org.au/published/workflow?id=e07866576cc2f467, https://usegalaxy.org.au/published/workflow?id=e28ca83f14f4ede5, https://usegalaxy.org.au/published/workflow?id=ea687c5613fcce27, https://usegalaxy.org.au/published/workflow?id=ea98be0f99aaceb9, https://usegalaxy.org.au/published/workflow?id=ecfb8a08e5a40e15, https://usegalaxy.org.au/published/workflow?id=f06370394b061e08, https://usegalaxy.org.au/published/workflow?id=f53d8ade897b3f46, https://usegalaxy.org.au/published/workflow?id=f7a866159f1eaecf, https://usegalaxy.org.au/published/workflow?id=f895914e322c8b77, https://usegalaxy.org.au/published/workflow?id=fa37223950a91f34, https://usegalaxy.org.au/published/workflow?id=fdec6e2fcd5e2cf5, https://usegalaxy.org.au/published/workflow?id=fe1e7fa0bc437ed8, https://usegalaxy.org.au/published/workflow?id=fea0e6c02c2f6274, https://usegalaxy.org.au/published/workflow?id=fff2e49bc90e38ca, https://usegalaxy.org/published/workflow?id=07e873a6d75dfe9f, https://usegalaxy.org/published/workflow?id=0993daadf2db5f51, https://usegalaxy.org/published/workflow?id=10d5e195501603bc, https://usegalaxy.org/published/workflow?id=1245e9435cbc3985, https://usegalaxy.org/published/workflow?id=137d0f05a71d7acb, https://usegalaxy.org/published/workflow?id=155839aeb6340f54, https://usegalaxy.org/published/workflow?id=15cca0e249f40aea, https://usegalaxy.org/published/workflow?id=1b434bfc3aac0022, https://usegalaxy.org/published/workflow?id=1d24cc949c52e475, https://usegalaxy.org/published/workflow?id=1ea88ca80a7f0038, https://usegalaxy.org/published/workflow?id=1eec2586d1ff908b, https://usegalaxy.org/published/workflow?id=237ca9f36ca266e7, https://usegalaxy.org/published/workflow?id=23eeee48217654d4, https://usegalaxy.org/published/workflow?id=242ef2e9dee35702, https://usegalaxy.org/published/workflow?id=25a9f0693ff6d327, https://usegalaxy.org/published/workflow?id=283bc048cc7a80f5, https://usegalaxy.org/published/workflow?id=284150bb1f296378, https://usegalaxy.org/published/workflow?id=28dbbfb3d480f4b1, https://usegalaxy.org/published/workflow?id=28ddea356ae57da1, https://usegalaxy.org/published/workflow?id=2b41752b8518a87b, https://usegalaxy.org/published/workflow?id=2c5c627c08563398, https://usegalaxy.org/published/workflow?id=2d994cc02ec05ede, https://usegalaxy.org/published/workflow?id=2f1469dab87a3649, https://usegalaxy.org/published/workflow?id=305fb9f84b053713, https://usegalaxy.org/published/workflow?id=3179c157fa5a2fdd, https://usegalaxy.org/published/workflow?id=31a6145b0832fa48, https://usegalaxy.org/published/workflow?id=325783f21bc5fef6, https://usegalaxy.org/published/workflow?id=349f1bcdbc84045f, https://usegalaxy.org/published/workflow?id=3753dcca4100e976, https://usegalaxy.org/published/workflow?id=3ba73f679558017c, https://usegalaxy.org/published/workflow?id=3d805d7e0f34c727, https://usegalaxy.org/published/workflow?id=3db4eb1ecb588d44, https://usegalaxy.org/published/workflow?id=3db51822f04f4ff7, https://usegalaxy.org/published/workflow?id=3f7550d5d2bf0b96, https://usegalaxy.org/published/workflow?id=408c799822cbf6ea, https://usegalaxy.org/published/workflow?id=426358bd988cb39d, https://usegalaxy.org/published/workflow?id=435f0340bf00c940, https://usegalaxy.org/published/workflow?id=44781c8b0bd667ed, https://usegalaxy.org/published/workflow?id=45c0b677c4920d03, https://usegalaxy.org/published/workflow?id=4605309321799e9b, https://usegalaxy.org/published/workflow?id=484f8fcf21d67376, https://usegalaxy.org/published/workflow?id=48dafc35989f13b1, https://usegalaxy.org/published/workflow?id=498a8c6329ca5728, https://usegalaxy.org/published/workflow?id=49a07807fcea8158, https://usegalaxy.org/published/workflow?id=49c9e8161a46667f, https://usegalaxy.org/published/workflow?id=4a0ad87aa5aa558a, https://usegalaxy.org/published/workflow?id=4bf38f5b45faa8a1, https://usegalaxy.org/published/workflow?id=4bf73376661baafd, https://usegalaxy.org/published/workflow?id=57e6345fda3e2682, https://usegalaxy.org/published/workflow?id=597c4d54f8a8ebe7, https://usegalaxy.org/published/workflow?id=5dfec2a3ae5fa765, https://usegalaxy.org/published/workflow?id=5edabfc62f58d8cf, https://usegalaxy.org/published/workflow?id=6341c384ceaf47ed, https://usegalaxy.org/published/workflow?id=653d553ac2fa51c8, https://usegalaxy.org/published/workflow?id=65b4051e722228b8, https://usegalaxy.org/published/workflow?id=65ccf48b7872e36c, https://usegalaxy.org/published/workflow?id=683e725f672b7d9b, https://usegalaxy.org/published/workflow?id=6b511b47176893e3, https://usegalaxy.org/published/workflow?id=6fc7497c86ebd8ee, https://usegalaxy.org/published/workflow?id=7072731b51e16923, https://usegalaxy.org/published/workflow?id=73c20d784b7ef81a, https://usegalaxy.org/published/workflow?id=74049914e4a6c791, https://usegalaxy.org/published/workflow?id=771345c66d5b9700, https://usegalaxy.org/published/workflow?id=7adf904dea83e699, https://usegalaxy.org/published/workflow?id=7b8ee08ba291d231, https://usegalaxy.org/published/workflow?id=7dba74c915f63dc1, https://usegalaxy.org/published/workflow?id=7f6900852a81d121, https://usegalaxy.org/published/workflow?id=81f1f0fd6d9235fd, https://usegalaxy.org/published/workflow?id=864da6858d34df08, https://usegalaxy.org/published/workflow?id=86c67855acbf6124, https://usegalaxy.org/published/workflow?id=88327cb2e0fe3c25, https://usegalaxy.org/published/workflow?id=8ccb42012dcb5db2, https://usegalaxy.org/published/workflow?id=8cfbaa14cff5a633, https://usegalaxy.org/published/workflow?id=8d605fbd33003d26, https://usegalaxy.org/published/workflow?id=903e35b62946ed76, https://usegalaxy.org/published/workflow?id=90f5b512997c70f8, https://usegalaxy.org/published/workflow?id=91a4daecbb97d03e, https://usegalaxy.org/published/workflow?id=932b3bc10186f73e, https://usegalaxy.org/published/workflow?id=936ed7447c8e0a2d, https://usegalaxy.org/published/workflow?id=93c1fef4472aa7a8, https://usegalaxy.org/published/workflow?id=950c7245a6c3f6e9, https://usegalaxy.org/published/workflow?id=951575e9a352301c, https://usegalaxy.org/published/workflow?id=961dac8100c6c70c, https://usegalaxy.org/published/workflow?id=96bd0007dceec123, https://usegalaxy.org/published/workflow?id=9938a81fb6911412, https://usegalaxy.org/published/workflow?id=9ab68c65337b893b, https://usegalaxy.org/published/workflow?id=9ddfdc9d6cacea88, https://usegalaxy.org/published/workflow?id=9f4c4038d1c519e2, https://usegalaxy.org/published/workflow?id=a4a6d6846c1692f9, https://usegalaxy.org/published/workflow?id=a8e0f77cd6ef49f9, https://usegalaxy.org/published/workflow?id=ab0be4897d5355ac, https://usegalaxy.org/published/workflow?id=acada5044d64a30a, https://usegalaxy.org/published/workflow?id=afa89bb0e8966753, https://usegalaxy.org/published/workflow?id=b12f99e2233fcca6, https://usegalaxy.org/published/workflow?id=b661fb850c4b4b01, https://usegalaxy.org/published/workflow?id=b6d535f210efa18e, https://usegalaxy.org/published/workflow?id=bb1cb6abfe84a646, https://usegalaxy.org/published/workflow?id=bbc894a79eb0e769, https://usegalaxy.org/published/workflow?id=bc72dcbca89ca35d, https://usegalaxy.org/published/workflow?id=bd6bfd338ffb9637, https://usegalaxy.org/published/workflow?id=bfd2e7e63d3e6856, https://usegalaxy.org/published/workflow?id=bfef75672b9c3ea4, https://usegalaxy.org/published/workflow?id=c09b8a0c96123cbb, https://usegalaxy.org/published/workflow?id=c0a9a2d53b8660de, https://usegalaxy.org/published/workflow?id=c451e4dca9981ed0, https://usegalaxy.org/published/workflow?id=c983ea8a32662cd6, https://usegalaxy.org/published/workflow?id=cb4ccd3068819418, https://usegalaxy.org/published/workflow?id=cc50da71cdf6f244, https://usegalaxy.org/published/workflow?id=cfd5dc3c7bc1e832, https://usegalaxy.org/published/workflow?id=d08135fa13d1745e, https://usegalaxy.org/published/workflow?id=d2e8a6b39fe88f4c, https://usegalaxy.org/published/workflow?id=d3f35215e6f45d79, https://usegalaxy.org/published/workflow?id=d4b2b85db47c405e, https://usegalaxy.org/published/workflow?id=daaded719dcfd53b, https://usegalaxy.org/published/workflow?id=dae5d5e5df5c4dd7, https://usegalaxy.org/published/workflow?id=dbe08700353dfc43, https://usegalaxy.org/published/workflow?id=e12e642b88a0fe08, https://usegalaxy.org/published/workflow?id=e4dd39237df58884, https://usegalaxy.org/published/workflow?id=eaf96fa3c39c210b, https://usegalaxy.org/published/workflow?id=ec3cc032a90c44f1, https://usegalaxy.org/published/workflow?id=f09033420c6267ab, https://usegalaxy.org/published/workflow?id=f1a54b10d4afce8f, https://usegalaxy.org/published/workflow?id=f4111a169255535c, https://usegalaxy.org/published/workflow?id=f93a4f6b5f3aaaed, https://usegalaxy.org/published/workflow?id=fa26fd51caea53c7, https://usegalaxy.org/published/workflow?id=fa36d9b50e956917, https://usegalaxy.org/published/workflow?id=fb98ef955b3dbd4b, https://usegalaxy.org/published/workflow?id=fc7b14aafa0b421e, https://usegalaxy.org/published/workflow?id=fd155fcba9bed7ff, https://usegalaxy.org/published/workflow?id=fd40e50c9f1545ce, https://workflowhub.eu/workflows/1054?version=1, https://workflowhub.eu/workflows/1096?version=2, https://workflowhub.eu/workflows/1103?version=3, https://workflowhub.eu/workflows/1104?version=2, https://workflowhub.eu/workflows/1162?version=2, https://workflowhub.eu/workflows/1163?version=2, https://workflowhub.eu/workflows/1164?version=2, https://workflowhub.eu/workflows/1255?version=3, https://workflowhub.eu/workflows/1323?version=1, https://workflowhub.eu/workflows/1500?version=1, https://workflowhub.eu/workflows/1504?version=1, https://workflowhub.eu/workflows/1509?version=1, https://workflowhub.eu/workflows/1525?version=1, https://workflowhub.eu/workflows/1549?version=1, https://workflowhub.eu/workflows/1580?version=1, https://workflowhub.eu/workflows/1607?version=1, https://workflowhub.eu/workflows/1621?version=1, https://workflowhub.eu/workflows/1641?version=1, https://workflowhub.eu/workflows/1646?version=1, https://workflowhub.eu/workflows/1656?version=1, https://workflowhub.eu/workflows/1746?version=1, https://workflowhub.eu/workflows/229?version=1, https://workflowhub.eu/workflows/358?version=1, https://workflowhub.eu/workflows/403?version=9, https://workflowhub.eu/workflows/605?version=1, https://workflowhub.eu/workflows/606?version=2, https://workflowhub.eu/workflows/608?version=1, https://workflowhub.eu/workflows/612?version=23, https://workflowhub.eu/workflows/625?version=23, https://workflowhub.eu/workflows/633?version=21, https://workflowhub.eu/workflows/641?version=25, https://workflowhub.eu/workflows/642?version=23, https://workflowhub.eu/workflows/701?version=1, https://workflowhub.eu/workflows/702?version=1, https://workflowhub.eu/workflows/751?version=16, https://workflowhub.eu/workflows/754?version=1, https://workflowhub.eu/workflows/788?version=1, https://workflowhub.eu/workflows/789?version=1, https://workflowhub.eu/workflows/794?version=2, https://workflowhub.eu/workflows/879?version=1, https://workflowhub.eu/workflows/881?version=5 |
assembly/ERGA-post-assembly-QC, assembly/assembly-quality-control, assembly/hifi-assembly, assembly/largegenome, assembly/vgp_genome_assembly, ecology/phylogeny-data-prep, genome-annotation/annotation-with-maker, genome-annotation/annotation-with-maker-short, genome-annotation/braker3, genome-annotation/comparison-braker-helixer-annotation, genome-annotation/funannotate, genome-annotation/helixer |
|
bwa |
bwa_mem, bwa |
Wrapper for bwa mem, aln, sampe, and samse |
2017-11-21 |
http://bio-bwa.sourceforge.net/ |
0.7.19 |
bwa |
0.7.19 |
Up-to-date |
Next Gen Mappers |
Genome indexing, Sequence alignment, Read mapping, Sequence alignment, Generation, Sequence alignment, Generation, Sequence alignment, Sequence alignment |
Genome indexing, Sequence alignment, Read mapping, Sequence alignment, Generation, Sequence alignment, Generation, Sequence alignment, Sequence alignment |
Mapping |
Mapping |
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/bwa |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bwa |
bwa |
BWA |
Fast, accurate, memory-efficient aligner for short and long sequencing reads |
|
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
2 |
11040 |
12010 |
991611 |
1044985 |
23320 |
34093 |
464912 |
710397 |
3463 |
4091 |
86061 |
96354 |
279 |
279 |
6471 |
6482 |
1858218 |
1549055 |
50473 |
38102 |
https://dev.workflowhub.eu/workflows/1005?version=1, https://dev.workflowhub.eu/workflows/1012?version=1, https://dev.workflowhub.eu/workflows/1074?version=2, https://dev.workflowhub.eu/workflows/1081?version=1, https://dev.workflowhub.eu/workflows/1089?version=1, https://dev.workflowhub.eu/workflows/1100?version=2, https://dev.workflowhub.eu/workflows/1114?version=1, https://dev.workflowhub.eu/workflows/1115?version=2, https://dev.workflowhub.eu/workflows/1118?version=1, https://dev.workflowhub.eu/workflows/1139?version=1, https://dev.workflowhub.eu/workflows/1175?version=2, https://dev.workflowhub.eu/workflows/1181?version=2, https://dev.workflowhub.eu/workflows/1208?version=1, https://dev.workflowhub.eu/workflows/1250?version=2, https://dev.workflowhub.eu/workflows/1276?version=2, https://dev.workflowhub.eu/workflows/127?version=1, https://dev.workflowhub.eu/workflows/132?version=1, https://dev.workflowhub.eu/workflows/143?version=1, https://dev.workflowhub.eu/workflows/146?version=1, https://dev.workflowhub.eu/workflows/196?version=2, https://dev.workflowhub.eu/workflows/197?version=2, https://dev.workflowhub.eu/workflows/38?version=1, https://dev.workflowhub.eu/workflows/41?version=1, https://usegalaxy.eu/published/workflow?id=0189bab68f828d86, https://usegalaxy.eu/published/workflow?id=0229f3f3835c2d53, https://usegalaxy.eu/published/workflow?id=07b74e4cf53cb633, https://usegalaxy.eu/published/workflow?id=0ab3e47ebd3b520e, https://usegalaxy.eu/published/workflow?id=0be293debca8fb9b, https://usegalaxy.eu/published/workflow?id=112422839b68db02, https://usegalaxy.eu/published/workflow?id=11290f22e13899bd, https://usegalaxy.eu/published/workflow?id=1761092d0e7deece, https://usegalaxy.eu/published/workflow?id=1c5588d6ac7f773f, https://usegalaxy.eu/published/workflow?id=1cd85fe90839c10d, https://usegalaxy.eu/published/workflow?id=220961d803697f54, https://usegalaxy.eu/published/workflow?id=24eaa682897379c8, https://usegalaxy.eu/published/workflow?id=2573209308aaad23, https://usegalaxy.eu/published/workflow?id=291c36e1b18e9deb, https://usegalaxy.eu/published/workflow?id=2a13eb981d6ee36e, https://usegalaxy.eu/published/workflow?id=2a39dbc8fc6dd5d3, https://usegalaxy.eu/published/workflow?id=2aede5c6577b28f5, https://usegalaxy.eu/published/workflow?id=2c3d05023c02113e, https://usegalaxy.eu/published/workflow?id=36a4646959829018, https://usegalaxy.eu/published/workflow?id=3b7c0b64033f38ac, https://usegalaxy.eu/published/workflow?id=3fb550d7c2bc390a, https://usegalaxy.eu/published/workflow?id=40a621934a07c7ee, https://usegalaxy.eu/published/workflow?id=45fc2dada84d251e, https://usegalaxy.eu/published/workflow?id=49ce9e738fadef4a, https://usegalaxy.eu/published/workflow?id=4a764275d4bf9f31, https://usegalaxy.eu/published/workflow?id=4b4bfc79205d83f1, https://usegalaxy.eu/published/workflow?id=4c75ab0be3c56494, https://usegalaxy.eu/published/workflow?id=4d80a87510b2a54e, https://usegalaxy.eu/published/workflow?id=4f62794453f65cba, https://usegalaxy.eu/published/workflow?id=52bdf400f97c5770, https://usegalaxy.eu/published/workflow?id=533819bcb5aa78c5, https://usegalaxy.eu/published/workflow?id=53de0e742573e588, https://usegalaxy.eu/published/workflow?id=579dd1e95e76402f, https://usegalaxy.eu/published/workflow?id=591ebf913450f49e, https://usegalaxy.eu/published/workflow?id=5a16af00bf8bf57b, https://usegalaxy.eu/published/workflow?id=5c15f251642bfa1f, https://usegalaxy.eu/published/workflow?id=5cb54278075696ca, https://usegalaxy.eu/published/workflow?id=5e3c352233aa7a52, https://usegalaxy.eu/published/workflow?id=5ed38d8114bcd6f7, https://usegalaxy.eu/published/workflow?id=614807d57979554c, https://usegalaxy.eu/published/workflow?id=6223333100a9e73f, https://usegalaxy.eu/published/workflow?id=629e57958afed44c, https://usegalaxy.eu/published/workflow?id=63eed9c2e025a723, https://usegalaxy.eu/published/workflow?id=6a5c39c1d38a10c2, https://usegalaxy.eu/published/workflow?id=6dbac47941a804da, https://usegalaxy.eu/published/workflow?id=6e1fe7372e93fae0, https://usegalaxy.eu/published/workflow?id=6ed1016dfdf9f928, https://usegalaxy.eu/published/workflow?id=74f19aff1b9cdd6b, https://usegalaxy.eu/published/workflow?id=75e88603745e069e, https://usegalaxy.eu/published/workflow?id=7b7ef222ac4f9887, https://usegalaxy.eu/published/workflow?id=7ef7b460143211df, https://usegalaxy.eu/published/workflow?id=81122d30c64a52a6, https://usegalaxy.eu/published/workflow?id=83049910e2cd5128, https://usegalaxy.eu/published/workflow?id=865f470be3c18b08, https://usegalaxy.eu/published/workflow?id=88064e2231165fd2, https://usegalaxy.eu/published/workflow?id=98bfad0c684011e9, https://usegalaxy.eu/published/workflow?id=99022559adf01c4a, https://usegalaxy.eu/published/workflow?id=99799eec4497f977, https://usegalaxy.eu/published/workflow?id=9a60ecf98d4f8134, https://usegalaxy.eu/published/workflow?id=9eda857e4141d56e, https://usegalaxy.eu/published/workflow?id=9feebfc6c34da287, https://usegalaxy.eu/published/workflow?id=a08279c2a305afff, https://usegalaxy.eu/published/workflow?id=a15dabcadb63b46d, https://usegalaxy.eu/published/workflow?id=a31100610fba17a1, https://usegalaxy.eu/published/workflow?id=a4e3667f6879bfaf, https://usegalaxy.eu/published/workflow?id=a62f21701ff37788, https://usegalaxy.eu/published/workflow?id=a6f4371ef9bc1aab, https://usegalaxy.eu/published/workflow?id=a9e1a6b90dbd2518, https://usegalaxy.eu/published/workflow?id=ada52ba09b462567, https://usegalaxy.eu/published/workflow?id=af30010868c97316, https://usegalaxy.eu/published/workflow?id=b02d90c32dc67730, https://usegalaxy.eu/published/workflow?id=b1d1694b95ed10e1, https://usegalaxy.eu/published/workflow?id=b3b094f1bdbaa04a, https://usegalaxy.eu/published/workflow?id=b77e3b08092fa73e, https://usegalaxy.eu/published/workflow?id=b82a4065be048ef6, https://usegalaxy.eu/published/workflow?id=b86f3775aa1f13bc, https://usegalaxy.eu/published/workflow?id=c084c2009f6b2d0a, https://usegalaxy.eu/published/workflow?id=c2af7a5dbfb5b023, https://usegalaxy.eu/published/workflow?id=c377b21d2be45a57, https://usegalaxy.eu/published/workflow?id=c789ab71876c6ead, https://usegalaxy.eu/published/workflow?id=c992e77a6e8edcbd, https://usegalaxy.eu/published/workflow?id=cd25f70f71683ab6, https://usegalaxy.eu/published/workflow?id=cd926dd6b70e72d6, https://usegalaxy.eu/published/workflow?id=d2f75f70c33394ee, https://usegalaxy.eu/published/workflow?id=d88145e7475e0b7b, https://usegalaxy.eu/published/workflow?id=da5d4e3e6c66cf3b, https://usegalaxy.eu/published/workflow?id=dd3193aaaf08e798, https://usegalaxy.eu/published/workflow?id=ddd604341afd9cf7, https://usegalaxy.eu/published/workflow?id=ea0524e0b5eab8b9, https://usegalaxy.eu/published/workflow?id=ed20bd120064bab0, https://usegalaxy.eu/published/workflow?id=ee0005a5487653ba, https://usegalaxy.eu/published/workflow?id=ee6dc47660540ba6, https://usegalaxy.eu/published/workflow?id=f33b5135ee99e0dc, https://usegalaxy.eu/published/workflow?id=f560e06d23818b4c, https://usegalaxy.eu/published/workflow?id=f97e6fe1fcbc53a7, https://usegalaxy.eu/published/workflow?id=fba10ba449498bb5, https://usegalaxy.eu/published/workflow?id=fc216dfb0ec9ed41, https://usegalaxy.eu/published/workflow?id=fcf745185d6e0ea4, https://usegalaxy.eu/published/workflow?id=ff2fd4a4bb27d859, https://usegalaxy.fr/published/workflow?id=2345fad7dac13daa, https://usegalaxy.fr/published/workflow?id=54b48eeeed3564dd, https://usegalaxy.fr/published/workflow?id=591c57173e259ca6, https://usegalaxy.fr/published/workflow?id=776ef2fa51094ba6, https://usegalaxy.fr/published/workflow?id=7d27dd394b921846, https://usegalaxy.fr/published/workflow?id=98529cff0ef36b91, https://usegalaxy.fr/published/workflow?id=bffee40c87c7b20a, https://usegalaxy.fr/published/workflow?id=d0d12c0b80c286f9, https://usegalaxy.fr/published/workflow?id=e0b225d4b2556365, https://usegalaxy.fr/published/workflow?id=e96cd8dd62fa0ff8, https://usegalaxy.org.au/published/workflow?id=02c74095a7128c9d, https://usegalaxy.org.au/published/workflow?id=06ba34da322f46f1, https://usegalaxy.org.au/published/workflow?id=094a545d44ce28cc, https://usegalaxy.org.au/published/workflow?id=0f48060aa1bd41a5, https://usegalaxy.org.au/published/workflow?id=14e80b7f9f68ec2a, https://usegalaxy.org.au/published/workflow?id=22bd45f60c60a338, https://usegalaxy.org.au/published/workflow?id=2362ff8880213586, https://usegalaxy.org.au/published/workflow?id=25403321a649a92b, https://usegalaxy.org.au/published/workflow?id=265a3ce9305702f5, https://usegalaxy.org.au/published/workflow?id=27205feb28b0ce06, https://usegalaxy.org.au/published/workflow?id=2b0a986519532412, https://usegalaxy.org.au/published/workflow?id=2b2ce7e1206d177d, https://usegalaxy.org.au/published/workflow?id=2cb16d321a804b1a, https://usegalaxy.org.au/published/workflow?id=30a601039d24e2eb, https://usegalaxy.org.au/published/workflow?id=3223ceaa2b58d940, https://usegalaxy.org.au/published/workflow?id=38f57cffaeb0e39f, https://usegalaxy.org.au/published/workflow?id=39b464084d930a33, https://usegalaxy.org.au/published/workflow?id=3c1b1f210c7c292b, https://usegalaxy.org.au/published/workflow?id=3c657dd766d02f6a, https://usegalaxy.org.au/published/workflow?id=3c7b55daae7c119b, https://usegalaxy.org.au/published/workflow?id=3d5deed70ac9bde4, https://usegalaxy.org.au/published/workflow?id=3e6f755ee62f7301, https://usegalaxy.org.au/published/workflow?id=3f39cf407c185724, https://usegalaxy.org.au/published/workflow?id=434127690544d0e9, https://usegalaxy.org.au/published/workflow?id=4cbc70a37a9da088, https://usegalaxy.org.au/published/workflow?id=51b745f8c964e5c6, https://usegalaxy.org.au/published/workflow?id=52b6fe5af4911b1a, https://usegalaxy.org.au/published/workflow?id=5442f0437ade82c4, https://usegalaxy.org.au/published/workflow?id=557601292ea0f6f3, https://usegalaxy.org.au/published/workflow?id=59d6ee23bff41eec, https://usegalaxy.org.au/published/workflow?id=6b1b0a945d367b4c, https://usegalaxy.org.au/published/workflow?id=71f90428fbf8755b, https://usegalaxy.org.au/published/workflow?id=738c0e8227519c25, https://usegalaxy.org.au/published/workflow?id=7563b3ef697a69fd, https://usegalaxy.org.au/published/workflow?id=76bb6bde19975e05, https://usegalaxy.org.au/published/workflow?id=79f4bdf9aab7c256, https://usegalaxy.org.au/published/workflow?id=7c343e5b55474d19, https://usegalaxy.org.au/published/workflow?id=7fd58f5fc93f414e, https://usegalaxy.org.au/published/workflow?id=8031655d71b59d15, https://usegalaxy.org.au/published/workflow?id=810242a3dc4f6170, https://usegalaxy.org.au/published/workflow?id=83c20d8e5fd97313, https://usegalaxy.org.au/published/workflow?id=84c98a23187d2a36, https://usegalaxy.org.au/published/workflow?id=869440d35a618836, https://usegalaxy.org.au/published/workflow?id=888eb87b62c4e6dd, https://usegalaxy.org.au/published/workflow?id=8a40059343cf4b87, https://usegalaxy.org.au/published/workflow?id=8b955274ca3ca3dc, https://usegalaxy.org.au/published/workflow?id=8ffcaa3f4a56ce35, https://usegalaxy.org.au/published/workflow?id=9fe99d6a57d51e73, https://usegalaxy.org.au/published/workflow?id=a35e5a238a70176a, https://usegalaxy.org.au/published/workflow?id=ae894cff1d1aba01, https://usegalaxy.org.au/published/workflow?id=b432a1312859edd2, https://usegalaxy.org.au/published/workflow?id=b5403e4fff2961f9, https://usegalaxy.org.au/published/workflow?id=ba30cc4a84c449f9, https://usegalaxy.org.au/published/workflow?id=baa763dbdf6afb71, https://usegalaxy.org.au/published/workflow?id=bcf230e526632064, https://usegalaxy.org.au/published/workflow?id=bd1cf22d47389742, https://usegalaxy.org.au/published/workflow?id=be9213411c520096, https://usegalaxy.org.au/published/workflow?id=bf80ef6e5f37deb7, https://usegalaxy.org.au/published/workflow?id=c1ce3f2ae7c81c3e, https://usegalaxy.org.au/published/workflow?id=c38b998d3e90c329, https://usegalaxy.org.au/published/workflow?id=c9156ca3df2b595c, https://usegalaxy.org.au/published/workflow?id=ca7fc6e2adbf1f26, https://usegalaxy.org.au/published/workflow?id=ccf936c5b2f2c2f3, https://usegalaxy.org.au/published/workflow?id=d3521c05077192df, https://usegalaxy.org.au/published/workflow?id=d35d05be576e8b13, https://usegalaxy.org.au/published/workflow?id=d8a4a8bc4fa2f9ee, https://usegalaxy.org.au/published/workflow?id=e439a0e17a90d24c, https://usegalaxy.org.au/published/workflow?id=f52fb12383c8a214, https://usegalaxy.org.au/published/workflow?id=fca05a51c9c91df4, https://usegalaxy.org.au/published/workflow?id=fe5542c99cdc57ce, https://usegalaxy.org.au/published/workflow?id=fedf2874752ac1f6, https://usegalaxy.org/published/workflow?id=01585f1230125ba1, https://usegalaxy.org/published/workflow?id=02755c14619242da, https://usegalaxy.org/published/workflow?id=02c96a9c6bb708ac, https://usegalaxy.org/published/workflow?id=02ff4efb583aaf49, https://usegalaxy.org/published/workflow?id=049e6609da2b67c4, https://usegalaxy.org/published/workflow?id=0660a00407fc16a1, https://usegalaxy.org/published/workflow?id=06d6dcd2655592af, https://usegalaxy.org/published/workflow?id=0843c6f15eae2f15, https://usegalaxy.org/published/workflow?id=08bdcecd1cb0bda3, https://usegalaxy.org/published/workflow?id=0a57740c68e85e21, https://usegalaxy.org/published/workflow?id=0a89328e6d28dd07, https://usegalaxy.org/published/workflow?id=0c6dbb2ef5eee5b9, https://usegalaxy.org/published/workflow?id=0e5a3899ae97076b, https://usegalaxy.org/published/workflow?id=0f43ad9dfd0f6d16, https://usegalaxy.org/published/workflow?id=0fa2ce12c2874b1d, https://usegalaxy.org/published/workflow?id=10c2136973c88d8a, https://usegalaxy.org/published/workflow?id=10d8d47f97afc999, https://usegalaxy.org/published/workflow?id=1518c8c50747a1c1, https://usegalaxy.org/published/workflow?id=15a0e22570f71098, https://usegalaxy.org/published/workflow?id=17a7ff756d37a437, https://usegalaxy.org/published/workflow?id=18c6e87a884fb5ed, https://usegalaxy.org/published/workflow?id=1d748868e78275dd, https://usegalaxy.org/published/workflow?id=1deaf458d6d8695a, https://usegalaxy.org/published/workflow?id=1e53fcd07ae5d859, https://usegalaxy.org/published/workflow?id=1e6a0d6395cf6221, https://usegalaxy.org/published/workflow?id=1f48b44fa22ac5fc, https://usegalaxy.org/published/workflow?id=1f4dc0488f0554c6, https://usegalaxy.org/published/workflow?id=1fdd58f4b7a6f643, https://usegalaxy.org/published/workflow?id=20023b26bb60f4df, https://usegalaxy.org/published/workflow?id=202648c6c615929b, https://usegalaxy.org/published/workflow?id=20fe561687df596c, https://usegalaxy.org/published/workflow?id=2135b0255284752c, https://usegalaxy.org/published/workflow?id=21a047a4e068860f, https://usegalaxy.org/published/workflow?id=2219c4aa7eb8cfb8, https://usegalaxy.org/published/workflow?id=22f6b939e97d3b47, https://usegalaxy.org/published/workflow?id=24663ad42c78106c, https://usegalaxy.org/published/workflow?id=2497103d279cd20e, https://usegalaxy.org/published/workflow?id=2524e026f069e885, https://usegalaxy.org/published/workflow?id=262ab42118016c41, https://usegalaxy.org/published/workflow?id=2644a8c0da3066c5, https://usegalaxy.org/published/workflow?id=26b35874b9e32355, https://usegalaxy.org/published/workflow?id=26c4909f2f3df704, https://usegalaxy.org/published/workflow?id=270e2cb6b02afc9c, https://usegalaxy.org/published/workflow?id=28abac549697f65a, https://usegalaxy.org/published/workflow?id=28e4871410288cb8, https://usegalaxy.org/published/workflow?id=2af3de32c630e1b4, https://usegalaxy.org/published/workflow?id=2bf89464c21ec7cd, https://usegalaxy.org/published/workflow?id=2c36a7ab1979ee8a, https://usegalaxy.org/published/workflow?id=2cbcfeb772f348c9, https://usegalaxy.org/published/workflow?id=2cfdacee3eaf0f13, https://usegalaxy.org/published/workflow?id=2d30be556aab1f52, https://usegalaxy.org/published/workflow?id=2db2d27f0c627f44, https://usegalaxy.org/published/workflow?id=2dd4f04c7de7d173, https://usegalaxy.org/published/workflow?id=2e65bc5f9d9f2a75, https://usegalaxy.org/published/workflow?id=303af6cec326947c, https://usegalaxy.org/published/workflow?id=307d19833ffb5395, https://usegalaxy.org/published/workflow?id=31acbfc6d3775846, https://usegalaxy.org/published/workflow?id=3269026bb1e0ec42, https://usegalaxy.org/published/workflow?id=33ae58f05e5e1d60, https://usegalaxy.org/published/workflow?id=34ab5572a9547bfe, https://usegalaxy.org/published/workflow?id=3565de0b5f5da36f, https://usegalaxy.org/published/workflow?id=35c2626849348f2c, https://usegalaxy.org/published/workflow?id=371b242d97f2f030, https://usegalaxy.org/published/workflow?id=3767c9c07462b777, https://usegalaxy.org/published/workflow?id=38cc6577c9b15275, https://usegalaxy.org/published/workflow?id=39753cc73284963f, https://usegalaxy.org/published/workflow?id=39e79458c9ba581c, https://usegalaxy.org/published/workflow?id=3a51f1f54b2ef024, https://usegalaxy.org/published/workflow?id=3bed12ef73ba93bf, https://usegalaxy.org/published/workflow?id=3d5347f1e8ee7db2, https://usegalaxy.org/published/workflow?id=3dc57709c4387ba7, https://usegalaxy.org/published/workflow?id=3f2d1003ff959c7c, https://usegalaxy.org/published/workflow?id=3f92474cd16ca314, https://usegalaxy.org/published/workflow?id=4054ceeba1a2fa69, https://usegalaxy.org/published/workflow?id=414fa13b613b33d8, https://usegalaxy.org/published/workflow?id=415c7152cb78e86f, https://usegalaxy.org/published/workflow?id=4164a02a6bd70893, https://usegalaxy.org/published/workflow?id=41bbf3cd893d400a, https://usegalaxy.org/published/workflow?id=41efc922cf146e0c, https://usegalaxy.org/published/workflow?id=43861b38cf6e927e, https://usegalaxy.org/published/workflow?id=43ca7614f6bb03d2, https://usegalaxy.org/published/workflow?id=4458439388155d92, https://usegalaxy.org/published/workflow?id=446a9297e64ecb72, https://usegalaxy.org/published/workflow?id=449a419bcfd3c49e, https://usegalaxy.org/published/workflow?id=46d035f814a9b4f8, https://usegalaxy.org/published/workflow?id=46e4acdc08eb3ea5, https://usegalaxy.org/published/workflow?id=470b41d0e43bb46b, https://usegalaxy.org/published/workflow?id=483a98be358ce21c, https://usegalaxy.org/published/workflow?id=49f8b32c3206f76c, https://usegalaxy.org/published/workflow?id=4b41a8247f52c463, https://usegalaxy.org/published/workflow?id=4cf8cc42e97b2da6, https://usegalaxy.org/published/workflow?id=4d0607d3589e0775, https://usegalaxy.org/published/workflow?id=4d251ecda59c87c5, https://usegalaxy.org/published/workflow?id=4dbac8374419d29e, https://usegalaxy.org/published/workflow?id=4de095b92ed661ac, https://usegalaxy.org/published/workflow?id=4e3efbdd0c4c3e64, https://usegalaxy.org/published/workflow?id=4ed9f54caa932479, https://usegalaxy.org/published/workflow?id=4f459cfef6108e75, https://usegalaxy.org/published/workflow?id=4fcfea3a6691e18b, https://usegalaxy.org/published/workflow?id=50206b10de958d03, https://usegalaxy.org/published/workflow?id=51754f5039d2f244, https://usegalaxy.org/published/workflow?id=529c6c68df669c51, https://usegalaxy.org/published/workflow?id=53d65fd38b9b8c1b, https://usegalaxy.org/published/workflow?id=53fea86eb74c224b, https://usegalaxy.org/published/workflow?id=5415e85a86898e41, https://usegalaxy.org/published/workflow?id=5641d1cbe795203f, https://usegalaxy.org/published/workflow?id=57726b39bbfb0c54, https://usegalaxy.org/published/workflow?id=57cfc1b5d9ea0d72, https://usegalaxy.org/published/workflow?id=5a610d5a42d50cf3, https://usegalaxy.org/published/workflow?id=5b2a0da883be03b7, https://usegalaxy.org/published/workflow?id=5b2bb861501fa248, https://usegalaxy.org/published/workflow?id=5b3e2ddf525da25d, https://usegalaxy.org/published/workflow?id=5bcd1aade71a8035, https://usegalaxy.org/published/workflow?id=5cad854edbbd3b69, https://usegalaxy.org/published/workflow?id=5ce5b3061c6afd82, https://usegalaxy.org/published/workflow?id=5eb2e090df59d9a9, https://usegalaxy.org/published/workflow?id=5fa548beeb1411f2, https://usegalaxy.org/published/workflow?id=5ffeb9904cf5f0bf, https://usegalaxy.org/published/workflow?id=612452c925d723b7, https://usegalaxy.org/published/workflow?id=61d03396ad7f25b9, https://usegalaxy.org/published/workflow?id=62436fe121e035e7, https://usegalaxy.org/published/workflow?id=62ae08ab1133c22f, https://usegalaxy.org/published/workflow?id=62b052f47ccf0a8c, https://usegalaxy.org/published/workflow?id=63e0dcf18794dbc1, https://usegalaxy.org/published/workflow?id=658f6e4985b6e4a7, https://usegalaxy.org/published/workflow?id=668df61f85b5b166, https://usegalaxy.org/published/workflow?id=67e3457099db3ed2, https://usegalaxy.org/published/workflow?id=67e56a9919ed84f7, https://usegalaxy.org/published/workflow?id=6822f413a3b09cb4, https://usegalaxy.org/published/workflow?id=688a55b9ec2f5bf7, https://usegalaxy.org/published/workflow?id=68d05aae72fcd2c9, https://usegalaxy.org/published/workflow?id=692a2b0bb818336d, https://usegalaxy.org/published/workflow?id=69363bab20c5ca6c, https://usegalaxy.org/published/workflow?id=69514a75e4c9af08, https://usegalaxy.org/published/workflow?id=695152887ca01bf0, https://usegalaxy.org/published/workflow?id=6a08af55c086ec62, https://usegalaxy.org/published/workflow?id=6b11d738ee57f245, https://usegalaxy.org/published/workflow?id=6be2c7930c391b35, https://usegalaxy.org/published/workflow?id=6cb8b40b819f2764, https://usegalaxy.org/published/workflow?id=6d60c4491138813a, https://usegalaxy.org/published/workflow?id=6d8f0be547b12528, https://usegalaxy.org/published/workflow?id=6d925811544f594b, https://usegalaxy.org/published/workflow?id=6dd383fd86fea674, https://usegalaxy.org/published/workflow?id=71f129d96b81851e, https://usegalaxy.org/published/workflow?id=71f8a4090877f171, https://usegalaxy.org/published/workflow?id=7203eb3b663bca11, https://usegalaxy.org/published/workflow?id=725f7ffa1cffa069, https://usegalaxy.org/published/workflow?id=7610b7797d71993a, https://usegalaxy.org/published/workflow?id=76247065c01f01d1, https://usegalaxy.org/published/workflow?id=762f23f5a621433d, https://usegalaxy.org/published/workflow?id=775e67dc75f741b8, https://usegalaxy.org/published/workflow?id=779ea0b19d07a1bd, https://usegalaxy.org/published/workflow?id=78979ec454b98338, https://usegalaxy.org/published/workflow?id=7a2b4675c758f34e, https://usegalaxy.org/published/workflow?id=7b9f36ae2174164a, https://usegalaxy.org/published/workflow?id=7c3faadda8f89749, https://usegalaxy.org/published/workflow?id=7d110e1fca0ac973, https://usegalaxy.org/published/workflow?id=7d6617b8316cee19, https://usegalaxy.org/published/workflow?id=7dde0721a382ea3e, https://usegalaxy.org/published/workflow?id=7decdde67868ed0f, https://usegalaxy.org/published/workflow?id=7e2651e5ed17e3db, https://usegalaxy.org/published/workflow?id=8041fad92ef6e904, https://usegalaxy.org/published/workflow?id=80b12b6e7ac8861f, https://usegalaxy.org/published/workflow?id=842bcba42c3085a4, https://usegalaxy.org/published/workflow?id=865d2cc4d14ec7e1, https://usegalaxy.org/published/workflow?id=8689dc9eac10c871, https://usegalaxy.org/published/workflow?id=86b802ea75d18160, https://usegalaxy.org/published/workflow?id=884ee0057bde9135, https://usegalaxy.org/published/workflow?id=89660361d4121fa8, https://usegalaxy.org/published/workflow?id=8b08a05c5926dd0f, https://usegalaxy.org/published/workflow?id=8b133c1d302c8681, https://usegalaxy.org/published/workflow?id=8b81b9a3b49bbf98, https://usegalaxy.org/published/workflow?id=8c1516493c55bf7d, https://usegalaxy.org/published/workflow?id=8c4fcd4bd9d5a72d, https://usegalaxy.org/published/workflow?id=8caea3788657235d, https://usegalaxy.org/published/workflow?id=8daa91d54040ba95, https://usegalaxy.org/published/workflow?id=8e1c6ad6ff623015, https://usegalaxy.org/published/workflow?id=8e9a94fe8e3fef9d, https://usegalaxy.org/published/workflow?id=8ec186ed3f0470e2, https://usegalaxy.org/published/workflow?id=906cc2c2d4e24483, https://usegalaxy.org/published/workflow?id=958f78270fc8f55c, https://usegalaxy.org/published/workflow?id=97263f3308077ff0, https://usegalaxy.org/published/workflow?id=9755ee798b9c119b, https://usegalaxy.org/published/workflow?id=98b2ac8fc75781f8, https://usegalaxy.org/published/workflow?id=99bc7ba3faa7ed55, https://usegalaxy.org/published/workflow?id=9b32025036bdacb9, https://usegalaxy.org/published/workflow?id=9b4323b68f609e06, https://usegalaxy.org/published/workflow?id=9b81d47a468d6f99, https://usegalaxy.org/published/workflow?id=9c0bbf9e1c90cd66, https://usegalaxy.org/published/workflow?id=9d2d8c39b63d8ef0, https://usegalaxy.org/published/workflow?id=9d456396b9cd79d7, https://usegalaxy.org/published/workflow?id=9d626a89800a96ca, https://usegalaxy.org/published/workflow?id=9f5f2e309a3ea50c, https://usegalaxy.org/published/workflow?id=9fc9f1db50019929, https://usegalaxy.org/published/workflow?id=a37961bf3d435918, https://usegalaxy.org/published/workflow?id=a3f7a57dbf8f0741, https://usegalaxy.org/published/workflow?id=a4f7af1e2cd826c3, https://usegalaxy.org/published/workflow?id=a7ee7de93a7fb261, https://usegalaxy.org/published/workflow?id=a89eaad3f42ec41c, https://usegalaxy.org/published/workflow?id=a98a3ac1a41752bc, https://usegalaxy.org/published/workflow?id=aadccbe72752c129, https://usegalaxy.org/published/workflow?id=ab6e4277fc825c5d, https://usegalaxy.org/published/workflow?id=ab8590a0ee1b9951, https://usegalaxy.org/published/workflow?id=ad6143e2f74e1e94, https://usegalaxy.org/published/workflow?id=adf531bc12766c9b, https://usegalaxy.org/published/workflow?id=ae359a3c83f2e19f, https://usegalaxy.org/published/workflow?id=ae83fb92e697e009, https://usegalaxy.org/published/workflow?id=aef91b21e3b72f70, https://usegalaxy.org/published/workflow?id=af5acb5dd7bfac56, https://usegalaxy.org/published/workflow?id=b1004c9974ceb785, https://usegalaxy.org/published/workflow?id=b16a1642e2cd54a2, https://usegalaxy.org/published/workflow?id=b26501a4a85bfdeb, https://usegalaxy.org/published/workflow?id=b33ad2032a655706, https://usegalaxy.org/published/workflow?id=b34ba9b2e4d8f050, https://usegalaxy.org/published/workflow?id=b461ac6f18e0c9cf, https://usegalaxy.org/published/workflow?id=b4d57f2aa0678ad2, https://usegalaxy.org/published/workflow?id=b50f2446d5e60334, https://usegalaxy.org/published/workflow?id=b561d3d9645a2726, https://usegalaxy.org/published/workflow?id=b68ec42db8953569, https://usegalaxy.org/published/workflow?id=b6d90898e2db6aba, https://usegalaxy.org/published/workflow?id=b8804291f2754fc8, https://usegalaxy.org/published/workflow?id=b9e6ddbc79904844, https://usegalaxy.org/published/workflow?id=ba405b449e27ba37, https://usegalaxy.org/published/workflow?id=ba5ea0a943d4359d, https://usegalaxy.org/published/workflow?id=ba68fd4b4348e63c, https://usegalaxy.org/published/workflow?id=baab0758f2240225, https://usegalaxy.org/published/workflow?id=bb16936081b820f6, https://usegalaxy.org/published/workflow?id=bbe6f5a45ea5ee5e, https://usegalaxy.org/published/workflow?id=bbe958a8c0bf4955, https://usegalaxy.org/published/workflow?id=bd00c8a7a3b7e5be, https://usegalaxy.org/published/workflow?id=bd184804cfddafc4, https://usegalaxy.org/published/workflow?id=bd355e8ce58a139e, https://usegalaxy.org/published/workflow?id=bf3ccae8d5b6ef58, https://usegalaxy.org/published/workflow?id=bfd3ba54576d2d81, https://usegalaxy.org/published/workflow?id=bfee1238c70627cb, https://usegalaxy.org/published/workflow?id=bff206b4625375bc, https://usegalaxy.org/published/workflow?id=c2c6779a8b1821e0, https://usegalaxy.org/published/workflow?id=c4aaf11b0cb6e5ac, https://usegalaxy.org/published/workflow?id=c57c820557ae9b55, https://usegalaxy.org/published/workflow?id=c75fcf2b7ba057fd, https://usegalaxy.org/published/workflow?id=c95fc8692a886a59, https://usegalaxy.org/published/workflow?id=c9a8fd89224e7414, https://usegalaxy.org/published/workflow?id=c9e442a395fc1a58, https://usegalaxy.org/published/workflow?id=cb03300161109123, https://usegalaxy.org/published/workflow?id=cbfdd5c8261fea57, https://usegalaxy.org/published/workflow?id=cdf5dffbed938d49, https://usegalaxy.org/published/workflow?id=ced446bf2428497b, https://usegalaxy.org/published/workflow?id=cfd37af9d6e4cbdb, https://usegalaxy.org/published/workflow?id=d0981820adf9c7d2, https://usegalaxy.org/published/workflow?id=d196c3bde666eccb, https://usegalaxy.org/published/workflow?id=d2edc47cc7963885, https://usegalaxy.org/published/workflow?id=d314df52f2f51502, https://usegalaxy.org/published/workflow?id=d3e656ab45f40c11, https://usegalaxy.org/published/workflow?id=d4ea6cdd40522eb1, https://usegalaxy.org/published/workflow?id=d50b2df115706adb, https://usegalaxy.org/published/workflow?id=d7049965ca7d8ea9, https://usegalaxy.org/published/workflow?id=d7d65ee5c5ca951f, https://usegalaxy.org/published/workflow?id=d7e14ff032a6ac4f, https://usegalaxy.org/published/workflow?id=d817e98cef94bc96, https://usegalaxy.org/published/workflow?id=d85f8ef78040fbb1, https://usegalaxy.org/published/workflow?id=d96bd5c9fb553f2c, https://usegalaxy.org/published/workflow?id=db8443163482a2e0, https://usegalaxy.org/published/workflow?id=dbcf0fbf5329b3fb, https://usegalaxy.org/published/workflow?id=dbdc894ad54675a8, https://usegalaxy.org/published/workflow?id=df1fa0b73f741a9c, https://usegalaxy.org/published/workflow?id=df6b9760e071b91b, https://usegalaxy.org/published/workflow?id=dfa8c64634aec75c, https://usegalaxy.org/published/workflow?id=e2432c4d2b61705a, https://usegalaxy.org/published/workflow?id=e282f505ba9f729f, https://usegalaxy.org/published/workflow?id=e2c77aeabb8053b4, https://usegalaxy.org/published/workflow?id=e2d7b8a4e6c422a3, https://usegalaxy.org/published/workflow?id=e4d260d46b516b4f, https://usegalaxy.org/published/workflow?id=e51aaf4d6b16b4d4, https://usegalaxy.org/published/workflow?id=e57d595b0cde1614, https://usegalaxy.org/published/workflow?id=e64a6119053cb126, https://usegalaxy.org/published/workflow?id=e67b6da41e1e6932, https://usegalaxy.org/published/workflow?id=e67db5dc8eab60f3, https://usegalaxy.org/published/workflow?id=e6a6223ef5ef85a7, https://usegalaxy.org/published/workflow?id=e6b803c1232cd08e, https://usegalaxy.org/published/workflow?id=e6f57346a02be07f, https://usegalaxy.org/published/workflow?id=e7030b62a3335bd7, https://usegalaxy.org/published/workflow?id=eb33df15225b8aa0, https://usegalaxy.org/published/workflow?id=ebbcdc389aad0eb8, https://usegalaxy.org/published/workflow?id=ebc9aad36017b567, https://usegalaxy.org/published/workflow?id=ec3d8d5d1531f92e, https://usegalaxy.org/published/workflow?id=ec96e3bf30d5f771, https://usegalaxy.org/published/workflow?id=edb299ecbf147618, https://usegalaxy.org/published/workflow?id=eed1aadf2fb83f6c, https://usegalaxy.org/published/workflow?id=eedbd4e9caca6195, https://usegalaxy.org/published/workflow?id=ef2c1fb7d6a51b3a, https://usegalaxy.org/published/workflow?id=ef44d02a79bd28bf, https://usegalaxy.org/published/workflow?id=f0feca8af9aeddba, https://usegalaxy.org/published/workflow?id=f1a9667c0b0999f4, https://usegalaxy.org/published/workflow?id=f23e5f333987a89f, https://usegalaxy.org/published/workflow?id=f302d673420a9bdd, https://usegalaxy.org/published/workflow?id=f3aba99a8204081e, https://usegalaxy.org/published/workflow?id=f3ed710e251833a7, https://usegalaxy.org/published/workflow?id=f58970e6914a1bba, https://usegalaxy.org/published/workflow?id=f60818a405f1bbbd, https://usegalaxy.org/published/workflow?id=f63f7a0a33a83841, https://usegalaxy.org/published/workflow?id=f88f186bc851e954, https://usegalaxy.org/published/workflow?id=f946f1309fe31ecf, https://usegalaxy.org/published/workflow?id=f9d546aae406cf15, https://usegalaxy.org/published/workflow?id=fae519dcba6bfc72, https://usegalaxy.org/published/workflow?id=fbf3116881e07749, https://usegalaxy.org/published/workflow?id=feeec17310351914, https://usegalaxy.org/published/workflow?id=ff137b61d4ef1b86, https://usegalaxy.org/published/workflow?id=ff35347c4e2f0e81, https://usegalaxy.org/published/workflow?id=ffae9c47980a5170, https://workflowhub.eu/workflows/110?version=11, https://workflowhub.eu/workflows/113?version=4, https://workflowhub.eu/workflows/1190?version=1, https://workflowhub.eu/workflows/1260?version=2, https://workflowhub.eu/workflows/1506?version=1, https://workflowhub.eu/workflows/1540?version=1, https://workflowhub.eu/workflows/155?version=5, https://workflowhub.eu/workflows/1606?version=1, https://workflowhub.eu/workflows/1610?version=1, https://workflowhub.eu/workflows/1617?version=1, https://workflowhub.eu/workflows/1628?version=1, https://workflowhub.eu/workflows/1642?version=1, https://workflowhub.eu/workflows/1651?version=1, https://workflowhub.eu/workflows/1653?version=1, https://workflowhub.eu/workflows/1659?version=1, https://workflowhub.eu/workflows/1660?version=1, https://workflowhub.eu/workflows/1665?version=1, https://workflowhub.eu/workflows/1668?version=1, https://workflowhub.eu/workflows/1678?version=1, https://workflowhub.eu/workflows/232?version=1, https://workflowhub.eu/workflows/233?version=1, https://workflowhub.eu/workflows/353?version=1, https://workflowhub.eu/workflows/357?version=1, https://workflowhub.eu/workflows/35?version=1, https://workflowhub.eu/workflows/36?version=1, https://workflowhub.eu/workflows/38?version=1, https://workflowhub.eu/workflows/39?version=1, https://workflowhub.eu/workflows/40?version=1, https://workflowhub.eu/workflows/439?version=3, https://workflowhub.eu/workflows/517?version=1, https://workflowhub.eu/workflows/518?version=1, https://workflowhub.eu/workflows/628?version=1, https://workflowhub.eu/workflows/676?version=1, https://workflowhub.eu/workflows/99?version=1 |
admin/reference-genomes, assembly/chloroplast-assembly, ecology/ref-based-rad-seq, epigenetics/hicexplorer, epigenetics/tal1-binding-site-identification, galaxy-interface/collections, introduction/galaxy-intro-ngs-data-managment, sequence-analysis/human-reads-removal, sequence-analysis/sars-with-galaxy-on-anvil, single-cell/scatac-preprocessing-tenx, single-cell/scatac-standard-processing-snapatac2, variant-analysis/aiv-analysis, variant-analysis/baculovirus-isolate-variation, variant-analysis/dunovo, variant-analysis/exome-seq, variant-analysis/non-dip, variant-analysis/pox-tiled-amplicon, variant-analysis/sars-cov-2, variant-analysis/somatic-variant-discovery, variant-analysis/somatic-variants |
|
bwa_mem2 |
bwa_mem2_idx, bwa_mem2 |
Bwa-mem2 is the next version of the bwa-mem algorithm in bwa. |
2021-10-08 |
https://github.com/bwa-mem2/bwa-mem2 |
2.3 |
bwa-mem2 |
2.3 |
Up-to-date |
Next Gen Mappers |
Sequence alignment |
Sequence alignment |
Mapping |
Mapping |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/bwa_mem2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bwa_mem2 |
bwa-mem2 |
Bwa-mem2 |
Bwa-mem2 is the next version of the bwa-mem algorithm in bwa. It produces alignment identical to bwa and is ~1.3-3.1x faster depending on the use-case, dataset and the running machine. |
|
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
2937 |
2937 |
72774 |
72774 |
3583 |
3583 |
54684 |
54684 |
866 |
866 |
24846 |
24846 |
42 |
42 |
385 |
385 |
152689 |
152689 |
7428 |
7428 |
https://dev.workflowhub.eu/workflows/1002?version=1, https://dev.workflowhub.eu/workflows/1127?version=3, https://dev.workflowhub.eu/workflows/1178?version=1, https://dev.workflowhub.eu/workflows/1187?version=2, https://usegalaxy.eu/published/workflow?id=069d99391a69baf4, https://usegalaxy.eu/published/workflow?id=0c3ce9feb83f7920, https://usegalaxy.eu/published/workflow?id=0cf3c2114ab65858, https://usegalaxy.eu/published/workflow?id=1860e02bcb894a64, https://usegalaxy.eu/published/workflow?id=1d1ebdeddf23bdb9, https://usegalaxy.eu/published/workflow?id=22454322d370b3ff, https://usegalaxy.eu/published/workflow?id=3010ecad1a342331, https://usegalaxy.eu/published/workflow?id=31f8c7c46207432f, https://usegalaxy.eu/published/workflow?id=3949d1d467224b0b, https://usegalaxy.eu/published/workflow?id=3b57fc81001667b5, https://usegalaxy.eu/published/workflow?id=44c92c04f1d14631, https://usegalaxy.eu/published/workflow?id=4949751217c0e211, https://usegalaxy.eu/published/workflow?id=5395e76fa828c343, https://usegalaxy.eu/published/workflow?id=54a4f76a5d736011, https://usegalaxy.eu/published/workflow?id=652433160b04b232, https://usegalaxy.eu/published/workflow?id=792b24fc23bd3071, https://usegalaxy.eu/published/workflow?id=7b4a9aebb09b51ca, https://usegalaxy.eu/published/workflow?id=7e383fe34031a9d0, https://usegalaxy.eu/published/workflow?id=7e68cf8a67efa8e9, https://usegalaxy.eu/published/workflow?id=84236d781f7dd2ad, https://usegalaxy.eu/published/workflow?id=8edf456f4aeddaac, https://usegalaxy.eu/published/workflow?id=a2daeb488bee0152, https://usegalaxy.eu/published/workflow?id=a37d1e0db16cfb67, https://usegalaxy.eu/published/workflow?id=a53f78aa6866b811, https://usegalaxy.eu/published/workflow?id=b287bb779cf686ef, https://usegalaxy.eu/published/workflow?id=bc32937d505135ab, https://usegalaxy.eu/published/workflow?id=bc8ccd13a07bd9ec, https://usegalaxy.eu/published/workflow?id=c8f94a2e838fc0f1, https://usegalaxy.eu/published/workflow?id=cab2aa791a814d55, https://usegalaxy.eu/published/workflow?id=d649ec485c4b3994, https://usegalaxy.eu/published/workflow?id=f63127675a07e00a, https://usegalaxy.eu/published/workflow?id=feeb1fa358ccf328, https://usegalaxy.org.au/published/workflow?id=0aa316f8c6cff444, https://usegalaxy.org.au/published/workflow?id=0dbb85f727302a72, https://usegalaxy.org.au/published/workflow?id=29f0c07c8a24b542, https://usegalaxy.org.au/published/workflow?id=3b6e9f03b088bf01, https://usegalaxy.org.au/published/workflow?id=44bad90b676d58f6, https://usegalaxy.org.au/published/workflow?id=455e68f185fec41b, https://usegalaxy.org.au/published/workflow?id=466809eb3392f7fb, https://usegalaxy.org.au/published/workflow?id=49b5c35b9723fa62, https://usegalaxy.org.au/published/workflow?id=4ea1049371de111c, https://usegalaxy.org.au/published/workflow?id=6c1c11a81a2ab1b8, https://usegalaxy.org.au/published/workflow?id=6de8899c40a90b98, https://usegalaxy.org.au/published/workflow?id=6ec5728eec9c26d7, https://usegalaxy.org.au/published/workflow?id=7028436ef03171cc, https://usegalaxy.org.au/published/workflow?id=77b2fcf8c805ad5d, https://usegalaxy.org.au/published/workflow?id=7a97e8ccc332c1e8, https://usegalaxy.org.au/published/workflow?id=868775ef66d174a5, https://usegalaxy.org.au/published/workflow?id=86eb0ea9dc230f04, https://usegalaxy.org.au/published/workflow?id=ae2a397837b232b1, https://usegalaxy.org.au/published/workflow?id=ae6a03240680712a, https://usegalaxy.org.au/published/workflow?id=b53f82aaf32fbaa9, https://usegalaxy.org.au/published/workflow?id=b9e89401313a0cca, https://usegalaxy.org.au/published/workflow?id=be35847680078c90, https://usegalaxy.org.au/published/workflow?id=cac0b8a09d59044b, https://usegalaxy.org.au/published/workflow?id=e07866576cc2f467, https://usegalaxy.org.au/published/workflow?id=ea98be0f99aaceb9, https://usegalaxy.org.au/published/workflow?id=f53d8ade897b3f46, https://usegalaxy.org.au/published/workflow?id=f7adc76331620f34, https://usegalaxy.org.au/published/workflow?id=fdec6e2fcd5e2cf5, https://usegalaxy.org/published/workflow?id=155839aeb6340f54, https://usegalaxy.org/published/workflow?id=1ea88ca80a7f0038, https://usegalaxy.org/published/workflow?id=23eeee48217654d4, https://usegalaxy.org/published/workflow?id=28dbbfb3d480f4b1, https://usegalaxy.org/published/workflow?id=28ddea356ae57da1, https://usegalaxy.org/published/workflow?id=2f21358621337cf2, https://usegalaxy.org/published/workflow?id=325783f21bc5fef6, https://usegalaxy.org/published/workflow?id=349f1bcdbc84045f, https://usegalaxy.org/published/workflow?id=3d805d7e0f34c727, https://usegalaxy.org/published/workflow?id=3db51822f04f4ff7, https://usegalaxy.org/published/workflow?id=49a07807fcea8158, https://usegalaxy.org/published/workflow?id=5951d11d3122abed, https://usegalaxy.org/published/workflow?id=6341c384ceaf47ed, https://usegalaxy.org/published/workflow?id=6d68f56abf9c624d, https://usegalaxy.org/published/workflow?id=74049914e4a6c791, https://usegalaxy.org/published/workflow?id=7b8ee08ba291d231, https://usegalaxy.org/published/workflow?id=88327cb2e0fe3c25, https://usegalaxy.org/published/workflow?id=903e35b62946ed76, https://usegalaxy.org/published/workflow?id=91a4daecbb97d03e, https://usegalaxy.org/published/workflow?id=930b554aa4b76ee1, https://usegalaxy.org/published/workflow?id=9f4c4038d1c519e2, https://usegalaxy.org/published/workflow?id=a4a6d6846c1692f9, https://usegalaxy.org/published/workflow?id=afa89bb0e8966753, https://usegalaxy.org/published/workflow?id=b55a27a75c63de66, https://usegalaxy.org/published/workflow?id=f09033420c6267ab, https://usegalaxy.org/published/workflow?id=fa36d9b50e956917, https://usegalaxy.org/published/workflow?id=fb98ef955b3dbd4b, https://workflowhub.eu/workflows/1054?version=1, https://workflowhub.eu/workflows/1103?version=3, https://workflowhub.eu/workflows/1104?version=2, https://workflowhub.eu/workflows/1164?version=2, https://workflowhub.eu/workflows/1607?version=1, https://workflowhub.eu/workflows/1613?version=1, https://workflowhub.eu/workflows/1641?version=1, https://workflowhub.eu/workflows/1738?version=1, https://workflowhub.eu/workflows/1739?version=1, https://workflowhub.eu/workflows/1740?version=1, https://workflowhub.eu/workflows/347?version=1, https://workflowhub.eu/workflows/351?version=1, https://workflowhub.eu/workflows/608?version=1, https://workflowhub.eu/workflows/625?version=23, https://workflowhub.eu/workflows/702?version=1, https://workflowhub.eu/workflows/788?version=1, https://workflowhub.eu/workflows/789?version=1 |
assembly/ERGA-post-assembly-QC, assembly/mrsa-nanopore, assembly/vgp_genome_assembly, introduction/galaxy-intro-ngs-data-managment |
|
bwameth |
bwameth |
Fast and accurate alignment of BS-seq reads |
2016-09-14 |
https://github.com/brentp/bwa-meth |
0.2.9 |
bwameth |
0.2.9 |
Up-to-date |
Sequence Analysis, Next Gen Mappers |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/bwameth |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/bwameth |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
664 |
915 |
8638 |
12922 |
740 |
741 |
6905 |
6914 |
143 |
143 |
1525 |
1525 |
0 |
0 |
0 |
0 |
21361 |
17068 |
1799 |
1547 |
https://dev.workflowhub.eu/workflows/1157?version=2, https://usegalaxy.org.au/published/workflow?id=91c8daa5f2bcf7c0, https://usegalaxy.org/published/workflow?id=e20e1371e50bdcee, https://usegalaxy.org/published/workflow?id=eb4f7dbca0114270, https://workflowhub.eu/workflows/1566?version=1 |
epigenetics/methylation-seq |
|
cactus |
cactus_cactus, cactus_export |
Cactus is a reference-free whole-genome multiple alignment program |
2022-01-28 |
https://github.com/ComparativeGenomicsToolkit/cactus |
2.7.1 |
|
|
To update |
Sequence Analysis |
Multiple sequence alignment, Genome alignment |
Multiple sequence alignment, Genome alignment |
Genomics, Sequence analysis, Phylogeny, Sequence assembly, Mapping, Phylogenetics |
Genomics, Sequence assembly, Mapping, Phylogenetics |
galaxy-australia |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/cactus |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/cactus |
cactus |
Cactus |
Cactus is a reference-free whole-genome multiple alignment program. |
|
0 |
2 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
0 |
65 |
65 |
367 |
367 |
0 |
0 |
0 |
0 |
88 |
88 |
2456 |
2456 |
3 |
3 |
11 |
11 |
2834 |
2834 |
156 |
156 |
|
|
|
calculate_contrast_threshold |
calculate_contrast_threshold |
Calculates a contrast threshold from the CDT file generated by ``tag_pileup_frequency``. The calculated values are then used to set a uniform contrast for all the heatmaps generated downstream. |
2019-08-26 |
https://github.com/CEGRcode/ChIP-QC-tools/tree/master/calculate_contrast_threshold |
1.0.0 |
numpy |
|
To update |
Visualization, Genomic Interval Operations, SAM |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/calculate_contrast_threshold |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/calculate_contrast_threshold |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
calculate_numeric_param |
calculate_numeric_param |
Calculate a numeric parameter value using integer and float values. |
2021-05-04 |
|
0.1.0 |
|
|
To update |
Text Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/calculate_numeric_param |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/calculate_numeric_param |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
12 |
12 |
1482 |
1482 |
2 |
2 |
242 |
242 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1724 |
1724 |
14 |
14 |
https://usegalaxy.eu/published/workflow?id=466bdd8ba7b67264 |
|
|
cami_amber |
biobox_add_taxid, cami_amber, cami_amber_add, cami_amber_convert |
Evaluation package for the comparative assessment of genome reconstructions and taxonomic assignments |
2024-05-20 |
https://github.com/CAMI-challenge/AMBER |
2.0.7 |
cami-amber |
2.0.7 |
Up-to-date |
Metagenomics |
Read binning |
Read binning |
Metagenomics |
Metagenomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/cami_amber |
cami-amber |
AMBER |
AMBER is an evaluation package for the comparative assessment of genome reconstructions and taxonomic assignments from metagenome benchmark datasets. It provides performance metrics, results rankings, and comparative visualizations for assessing multiple programs or parameter effects. The provided metrics were used in the first community benchmarking challenge of the initiative for the Critical Assessment of Metagenomic Interpretation. |
|
0 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
6 |
8385 |
8385 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8385 |
8385 |
6 |
6 |
https://usegalaxy.eu/published/workflow?id=17d2e76147fc940c, https://usegalaxy.eu/published/workflow?id=43098b8afe78b071, https://usegalaxy.eu/published/workflow?id=83c5bf0208f4d217, https://usegalaxy.eu/published/workflow?id=aa5b077da1d36b23, https://usegalaxy.eu/published/workflow?id=b0377f05f97b18b1, https://usegalaxy.eu/published/workflow?id=ce5c9287a67e6085, https://usegalaxy.eu/published/workflow?id=e4dabaf57668dbd1 |
|
|
cd_hit |
cd_hit |
Cluster or compare biological sequence datasets |
2018-02-26 |
http://weizhongli-lab.org/cd-hit/ |
4.8.1 |
cd-hit |
4.8.1 |
Up-to-date |
Sequence Analysis, Fasta Manipulation |
Sequence clustering |
Sequence clustering |
Sequencing |
Sequencing |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/cdhit |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/cdhit |
cd-hit |
cd-hit |
Cluster a nucleotide dataset into representative sequences. |
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
618 |
618 |
12704 |
12704 |
1 |
1 |
2 |
2 |
1 |
1 |
2 |
2 |
50 |
50 |
1025 |
1025 |
13733 |
13733 |
670 |
670 |
https://usegalaxy.eu/published/workflow?id=974cc681d07ec788, https://usegalaxy.eu/published/workflow?id=9b9e1e28f3683f92, https://usegalaxy.eu/published/workflow?id=bebcbd6f0ffa55c5 |
|
|
cemitool |
cemitool |
Gene co-expression network analysis tool |
2022-10-10 |
https://www.bioconductor.org/packages/release/bioc/html/CEMiTool.html |
1.30.0 |
bioconductor-cemitool |
1.30.0 |
Up-to-date |
Transcriptomics, RNA, Statistics, Single Cell |
Enrichment analysis, Pathway or network analysis |
Enrichment analysis, Pathway or network analysis |
Gene expression, Transcriptomics, Microarray experiment |
Transcriptomics, Microarray experiment |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/cemitool |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/cemitool |
cemitool |
CEMiTool |
It unifies the discovery and the analysis of coexpression gene modules in a fully automatic manner, while providing a user-friendly html report with high quality graphs. Our tool evaluates if modules contain genes that are over-represented by specific pathways or that are altered in a specific sample group. Additionally, CEMiTool is able to integrate transcriptomic data with interactome information, identifying the potential hubs on each network. |
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
36 |
36 |
290 |
290 |
70 |
70 |
452 |
452 |
3 |
3 |
64 |
64 |
0 |
0 |
0 |
0 |
806 |
806 |
109 |
109 |
|
|
|
charts |
charts |
Enables advanced visualization options in Galaxy Charts |
2018-01-30 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ |
1.0.1 |
r-getopt |
|
To update |
Visualization |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/charts/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/charts |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1626 |
2016 |
3490 |
4417 |
3691 |
7220 |
7785 |
14556 |
74 |
145 |
195 |
350 |
29 |
29 |
56 |
56 |
19379 |
11526 |
9410 |
5420 |
https://usegalaxy.eu/published/workflow?id=f30c8054f064ac9f, https://usegalaxy.org/published/workflow?id=cb03300161109123 |
|
|
checkm |
checkm_analyze, checkm_lineage_set, checkm_lineage_wf, checkm_plot, checkm_qa, checkm_taxon_set, checkm_taxonomy_wf, checkm_tetra, checkm_tree, checkm_tree_qa |
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes |
2022-07-29 |
https://github.com/Ecogenomics/CheckM |
1.2.4 |
checkm-genome |
1.2.4 |
Up-to-date |
Metagenomics |
Sequence assembly validation, Validation, Sequence composition calculation, Sequencing quality control, Statistical calculation |
Sequence assembly validation, Sequence composition calculation, Statistical calculation |
Genomics, Phylogenomics, Phylogenetics, Taxonomy, Metagenomics, Data quality management |
Phylogenomics, Phylogenetics, Taxonomy, Metagenomics, Data quality management |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/checkm |
checkm |
CheckM |
CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. |
|
10 |
10 |
10 |
10 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
0 |
0 |
458 |
458 |
9600 |
9600 |
40 |
40 |
213 |
213 |
35 |
35 |
799 |
799 |
43 |
43 |
1352 |
1352 |
11964 |
11964 |
576 |
576 |
https://usegalaxy.eu/published/workflow?id=0563f58718be932d, https://usegalaxy.eu/published/workflow?id=1e5f1d9a51032e44, https://usegalaxy.eu/published/workflow?id=3eaa913306c16146, https://usegalaxy.eu/published/workflow?id=3f6c7249ef71ae41, https://usegalaxy.eu/published/workflow?id=6158c3b5fc12044e, https://usegalaxy.eu/published/workflow?id=6416cfdbd5273063, https://usegalaxy.eu/published/workflow?id=667bac8d7453e5f1, https://usegalaxy.eu/published/workflow?id=87231a6a7938cb95, https://usegalaxy.eu/published/workflow?id=8deb08d4f228e198, https://usegalaxy.eu/published/workflow?id=97312d273b6e8bd9, https://usegalaxy.eu/published/workflow?id=d57d41e306241396, https://usegalaxy.org.au/published/workflow?id=92fcdd490831c6c5, https://usegalaxy.org/published/workflow?id=7251c6e0dad8f927, https://workflowhub.eu/workflows/1352?version=3 |
microbiome/metagenomics-binning |
|
checkm2 |
checkm2 |
Rapid assessment of genome bin quality using machine learning |
2024-11-08 |
https://github.com/chklovski/CheckM2 |
1.0.2 |
checkm2 |
1.1.0 |
To update |
Metagenomics |
Sequence assembly validation, Validation, Sequence composition calculation, Sequencing quality control, Statistical calculation |
Sequence assembly validation, Sequence composition calculation, Statistical calculation |
Genomics, Phylogenomics, Phylogenetics, Taxonomy, Metagenomics, Data quality management |
Phylogenomics, Phylogenetics, Taxonomy, Metagenomics, Data quality management |
iuc |
https://github.com/galaxyproject/tools-iuc/blob/main/tools/checkm2/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/checkm2 |
checkm |
CheckM |
CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. |
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
https://usegalaxy.eu/published/workflow?id=3303a04887a47675, https://usegalaxy.eu/published/workflow?id=3f6c7249ef71ae41, https://usegalaxy.eu/published/workflow?id=7ecd92cb382d8168, https://usegalaxy.eu/published/workflow?id=87231a6a7938cb95, https://usegalaxy.eu/published/workflow?id=e532d98f4b368666, https://usegalaxy.org/published/workflow?id=524602abe59b18f7, https://usegalaxy.org/published/workflow?id=5cd56232e873beab, https://workflowhub.eu/workflows/1352?version=3 |
genome-annotation/bacterial-genome-quality-control |
|
cherri |
cherri_eval, cherri_train |
Computational Help Evaluating RNA-RNA interactions |
2022-12-09 |
https://github.com/BackofenLab/Cherri |
0.7 |
cherri |
0.8 |
To update |
Transcriptomics, RNA |
|
|
Molecular interactions, pathways and networks, Structure analysis, Machine learning |
Molecular interactions, pathways and networks, Structure analysis, Machine learning |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/cherri |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/cherri |
cherri |
cherri |
CheRRI detects functional RNA-RNA interaction (RRI) sites, by evaluating if an interaction site most likely occurs in nature. It helps to filter interaction sites generated either experimentally or by an RRI prediction algorithm by removing false positive interactions. |
|
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
1 |
1 |
207 |
207 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
207 |
207 |
1 |
1 |
|
|
|
chewbbaca |
chewbbaca_allelecall, chewbbaca_allelecallevaluator, chewbbaca_createschema, chewbbaca_downloadschema, chewbbaca_extractcgmlst, chewbbaca_joinprofiles, chewbbaca_nsstats, chewbbaca_prepexternalschema |
BSR-Based Allele Calling Algorithm |
2024-04-13 |
https://github.com/B-UMMI/chewBBACA/tree/master |
|
chewbbaca |
3.4.1 |
To update |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/chewbbaca |
|
|
|
|
0 |
0 |
8 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
52 |
52 |
1302 |
1302 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1302 |
1302 |
52 |
52 |
|
|
|
chira |
chira_collapse, chira_extract, chira_map, chira_merge, chira_quantify |
Chimeric Read Annotator for RNA-RNA interactome data |
2020-01-19 |
https://github.com/pavanvidem/chira |
1.4.3 |
chira |
1.4.3 |
Up-to-date |
RNA, Transcriptomics, Sequence Analysis |
|
|
RNA, Molecular interactions, pathways and networks, Functional, regulatory and non-coding RNA |
Molecular interactions, pathways and networks, Functional, regulatory and non-coding RNA |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/chira |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/chira |
chira |
ChiRA |
ChiRA is a tool suite to analyze RNA-RNA interactome experimental data such as CLASH, CLEAR-CLIP, PARIS, SPLASH, etc. |
|
5 |
5 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
5 |
5 |
0 |
116 |
116 |
29825 |
29828 |
72 |
72 |
12702 |
12702 |
8 |
8 |
330 |
330 |
0 |
0 |
0 |
0 |
42860 |
42857 |
196 |
196 |
https://dev.workflowhub.eu/workflows/1291?version=2, https://usegalaxy.eu/published/workflow?id=25a209bda998412f, https://usegalaxy.eu/published/workflow?id=26c4882e320ed7b3, https://usegalaxy.eu/published/workflow?id=66834f10c86362b9, https://workflowhub.eu/workflows/1681?version=1, https://workflowhub.eu/workflows/66?version=1, https://workflowhub.eu/workflows/67?version=1 |
transcriptomics/rna-interactome |
|
chopin2 |
chopin2 |
Domain-Agnostic Supervised Learning with Hyperdimensional Computing |
2023-01-18 |
https://github.com/cumbof/chopin2 |
1.0.9.post1 |
chopin2 |
|
To update |
Machine Learning |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/chopin2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/chopin2 |
|
|
|
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 |
7 |
17 |
17 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
17 |
17 |
7 |
7 |
|
statistics/hyperdimensional_computing |
|
chopper |
chopper |
Filtering and trimming of fastq files with long read sequencing such as PacBio or ONT. |
2025-07-22 |
https://github.com/wdecoster/chopper |
0.10.0 |
chopper |
0.10.0 |
Up-to-date |
Sequence Analysis, Fastq Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/chopper/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/chopper |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
chromeister |
chromeister |
ultra-fast pairwise genome comparisons |
2020-09-30 |
https://github.com/estebanpw/chromeister |
1.5.a |
chromeister |
1.5.a |
Up-to-date |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/chromeister |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/chromeister |
|
|
|
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
470 |
470 |
9192 |
9192 |
0 |
0 |
0 |
0 |
224 |
224 |
1493 |
1493 |
55 |
55 |
2423 |
2423 |
13108 |
13108 |
749 |
749 |
https://dev.workflowhub.eu/workflows/1004?version=1, https://dev.workflowhub.eu/workflows/1128?version=1, https://dev.workflowhub.eu/workflows/1156?version=1, https://usegalaxy.org.au/published/workflow?id=478c79365fc9677f, https://usegalaxy.org.au/published/workflow?id=7f37c5366bce5489, https://usegalaxy.org.au/published/workflow?id=d06665e4bc7fff6d, https://usegalaxy.org.au/published/workflow?id=d957bfeb3cd03db0, https://workflowhub.eu/workflows/1545?version=1, https://workflowhub.eu/workflows/1646?version=1 |
assembly/assembly-quality-control, genome-annotation/hpc-for-lsgc |
|
cialign |
cialign |
Tool to clean, visualise and analyse a multiple sequence alignment |
2025-08-04 |
https://github.com/KatyBrown/CIAlign |
1.1.4 |
cialign |
1.1.4 |
Up-to-date |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/cialign |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/cialign |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
circexplorer2 |
circexplorer2 |
Comprehensive and integrative circular RNA analysis toolset. |
2022-08-26 |
https://github.com/YangLab/CIRCexplorer2 |
2.3.8 |
circexplorer2 |
2.3.8 |
Up-to-date |
RNA, Assembly |
|
|
RNA splicing, Gene transcripts, Literature and language |
RNA splicing, Gene transcripts, Literature and language |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/circexplorer2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/circexplorer2 |
circexplorer2 |
CIRCexplorer2 |
Genome-wide annotation of circRNAs and their alternative back-splicing/splicing. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
37 |
37 |
806 |
806 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
806 |
806 |
37 |
37 |
|
|
|
circos |
circos_aln_to_links, circos_binlinks, circos_bundlelinks, circos, circos_gc_skew, circos_resample, circos_wiggle_to_scatter, circos_wiggle_to_stacked, circos_tableviewer, circos_interval_to_text, circos_interval_to_tile |
Build Circos Plots in Galaxy |
2017-08-07 |
http://circos.ca/ |
0.69.8 |
circos |
0.69.9 |
To update |
Graphics |
Sequence visualisation |
Sequence visualisation |
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/circos |
galactic_circos |
Galactic Circos |
Galactic Circos is a Galaxy wrapper providing a GUI for the Circos tool. Circos allows visualizing data in a circular format. |
|
11 |
11 |
11 |
11 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
11 |
11 |
0 |
0 |
0 |
0 |
0 |
11 |
0 |
0 |
0 |
0 |
11 |
11 |
11 |
0 |
1239 |
1264 |
28546 |
29368 |
1606 |
1646 |
34138 |
34638 |
467 |
474 |
26702 |
27064 |
23 |
23 |
571 |
571 |
91641 |
89957 |
3407 |
3335 |
https://dev.workflowhub.eu/workflows/1118?version=1, https://dev.workflowhub.eu/workflows/1248?version=2, https://dev.workflowhub.eu/workflows/1249?version=2, https://dev.workflowhub.eu/workflows/1253?version=1, https://dev.workflowhub.eu/workflows/1337?version=1, https://dev.workflowhub.eu/workflows/630?version=1, https://usegalaxy.eu/published/workflow?id=0de5fcc38ef1501d, https://usegalaxy.eu/published/workflow?id=152223c8aed27357, https://usegalaxy.eu/published/workflow?id=220961d803697f54, https://usegalaxy.eu/published/workflow?id=2c3d05023c02113e, https://usegalaxy.eu/published/workflow?id=2d0400b5d05c6c10, https://usegalaxy.eu/published/workflow?id=5ed38d8114bcd6f7, https://usegalaxy.eu/published/workflow?id=6ed1016dfdf9f928, https://usegalaxy.eu/published/workflow?id=75e88603745e069e, https://usegalaxy.eu/published/workflow?id=b1d1694b95ed10e1, https://usegalaxy.org.au/published/workflow?id=0f9a29e8eac2075c, https://usegalaxy.org.au/published/workflow?id=4871f853090e8be8, https://usegalaxy.org.au/published/workflow?id=6588e175004aba38, https://usegalaxy.org.au/published/workflow?id=6a58898d37da5c83, https://usegalaxy.org.au/published/workflow?id=f85353f93461d180, https://workflowhub.eu/workflows/1413?version=1, https://workflowhub.eu/workflows/1415?version=1, https://workflowhub.eu/workflows/1419?version=1, https://workflowhub.eu/workflows/1651?version=1, https://workflowhub.eu/workflows/676?version=1 |
assembly/ecoli_comparison, variant-analysis/somatic-variant-discovery, visualisation/circos, visualisation/circos-microbial |
|
cite_seq_count |
cite_seq_count |
Count CMO/HTO |
2023-01-18 |
https://github.com/Hoohm/CITE-seq-Count |
1.4.4 |
cite-seq-count |
1.4.5 |
To update |
Single Cell, Transcriptomics, Proteomics |
RNA-Seq quantification |
RNA-Seq quantification |
Transcriptomics, Immunoproteins and antigens |
Transcriptomics, Immunoproteins and antigens |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/cite_seq_count |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/cite_seq_count |
CITE-seq-Count |
CITE-seq-Count |
Tool for counting antibody TAGS from a CITE-seq and/or cell hashing experiment. |
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
4 |
4 |
21 |
21 |
5 |
5 |
9 |
9 |
1 |
1 |
144 |
144 |
0 |
0 |
0 |
0 |
174 |
174 |
10 |
10 |
https://usegalaxy.eu/published/workflow?id=4cb8f782994763a4, https://usegalaxy.eu/published/workflow?id=5009d8d7a907a825, https://usegalaxy.eu/published/workflow?id=6ed089fe65347272, https://usegalaxy.eu/published/workflow?id=865715636d40b798, https://usegalaxy.eu/published/workflow?id=a18615f77ed3f371, https://usegalaxy.eu/published/workflow?id=a72e3cb6eb656102, https://usegalaxy.eu/published/workflow?id=c4327bccfa623f7e, https://usegalaxy.org.au/published/workflow?id=0f01e24e6c33a834, https://usegalaxy.org.au/published/workflow?id=109f0c68e617e104, https://usegalaxy.org.au/published/workflow?id=aa387984ac9e2f71, https://usegalaxy.org.au/published/workflow?id=b09530351a9e9ffb, https://usegalaxy.org.au/published/workflow?id=b88036506d0be117, https://usegalaxy.org.au/published/workflow?id=bcdbefda8e15e547, https://usegalaxy.org/published/workflow?id=1d19cf599e1d4a0f, https://usegalaxy.org/published/workflow?id=41c40e7aa6b24f51, https://usegalaxy.org/published/workflow?id=586b923221fb5da4, https://usegalaxy.org/published/workflow?id=73a8b48cbd6f1d8c, https://usegalaxy.org/published/workflow?id=90ac9dc2bd9d8092, https://usegalaxy.org/published/workflow?id=a737766dd083b280, https://workflowhub.eu/workflows/694?version=7 |
|
|
clair3 |
clair3 |
Symphonizing pileup and full-alignment for high-performance long-read variant calling |
2022-06-15 |
https://github.com/HKU-BAL/Clair3 |
1.0.10 |
clair3 |
1.2.0 |
To update |
Sequence Analysis, Variant Analysis |
Variant calling |
Variant calling |
Molecular genetics |
Molecular genetics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/clair3 |
clair3 |
Clair3 |
Clair3 is a germline small variant caller for long-reads. Clair3 makes the best of two major method categories: pileup calling handles most variant candidates with speed, and full-alignment tackles complicated candidates to maximize precision and recall. Clair3 runs fast and has superior performance, especially at lower coverage. Clair3 is simple and modular for easy deployment and integration. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
242 |
242 |
4369 |
4369 |
21 |
21 |
547 |
547 |
8 |
8 |
165 |
165 |
0 |
0 |
0 |
0 |
5081 |
5081 |
271 |
271 |
https://dev.workflowhub.eu/workflows/1083?version=1, https://usegalaxy.eu/published/workflow?id=09c7069ae409c362, https://usegalaxy.eu/published/workflow?id=3f0b104a74acf869, https://usegalaxy.eu/published/workflow?id=60e0b2a28a900178, https://usegalaxy.eu/published/workflow?id=64abcddeb516a712, https://usegalaxy.eu/published/workflow?id=6aa2891bd2b41f32, https://usegalaxy.eu/published/workflow?id=cb54883452a73019, https://usegalaxy.eu/published/workflow?id=cdf2f02428f5f83f, https://usegalaxy.eu/published/workflow?id=d215a2e554fd83bc, https://usegalaxy.org.au/published/workflow?id=0e11619979c2830c, https://usegalaxy.org.au/published/workflow?id=244ea5e94237ebad, https://usegalaxy.org.au/published/workflow?id=76a0a3af8de11622, https://usegalaxy.org.au/published/workflow?id=857e482acfcb2dba, https://usegalaxy.org/published/workflow?id=29ba77708cdafe0f, https://usegalaxy.org/published/workflow?id=38911ba6f66d80f6, https://usegalaxy.org/published/workflow?id=3e703abaeb870f6f, https://usegalaxy.org/published/workflow?id=6d778eeb176d563c, https://usegalaxy.org/published/workflow?id=cb810cdaa4915f4b, https://workflowhub.eu/workflows/1063?version=5, https://workflowhub.eu/workflows/1479?version=1 |
microbiome/pathogen-detection-from-nanopore-foodborne-data |
|
clustalw |
clustalw |
ClustalW multiple sequence alignment program for DNA or proteins |
2022-10-02 |
http://www.clustal.org/clustal2/ |
2.1 |
clustalw |
2.1 |
Up-to-date |
Phylogenetics, Sequence Analysis |
Multiple sequence alignment |
Multiple sequence alignment |
Phylogeny, Sequence analysis |
Phylogeny, Sequence analysis |
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/clustalw |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/clustalw |
clustal2 |
Clustal 2 (Clustal W, Clustal X) |
Multiple sequence alignment program with a command-line interface (Clustal W) and a graphical user interface (Clustal X). The display colours allow conserved features to be highlighted for easy viewing in the alignment. It is available for several platforms, including Windows, Macintosh PowerMac, Linux and Solaris.Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, Clustal2. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1879 |
2012 |
89195 |
90338 |
3880 |
7737 |
53695 |
93366 |
720 |
796 |
10072 |
11520 |
35 |
35 |
662 |
662 |
195886 |
153624 |
10580 |
6514 |
https://dev.workflowhub.eu/workflows/1077?version=2, https://dev.workflowhub.eu/workflows/1160?version=2, https://dev.workflowhub.eu/workflows/1264?version=2, https://usegalaxy.eu/published/workflow?id=36de05d50c703164, https://usegalaxy.eu/published/workflow?id=376119528377a3ae, https://usegalaxy.eu/published/workflow?id=3e0246389fb70340, https://usegalaxy.eu/published/workflow?id=974cc681d07ec788, https://usegalaxy.eu/published/workflow?id=c8bc4af6dd3b5d02, https://usegalaxy.eu/published/workflow?id=f6a763951d815944, https://usegalaxy.org.au/published/workflow?id=b60922a253df6654, https://usegalaxy.org.au/published/workflow?id=eda40b58616a0fe4, https://usegalaxy.org/published/workflow?id=042758b8a8c5ac80, https://usegalaxy.org/published/workflow?id=18e7a954c0b6e4bc, https://usegalaxy.org/published/workflow?id=2d3063882d8239ff, https://usegalaxy.org/published/workflow?id=3d7baebefa7c9b81, https://usegalaxy.org/published/workflow?id=3ef08553982f6ffc, https://usegalaxy.org/published/workflow?id=603e5c61c57bcf3f, https://usegalaxy.org/published/workflow?id=6a1eb7e7bececba1, https://usegalaxy.org/published/workflow?id=75c2cf36253194c2, https://usegalaxy.org/published/workflow?id=7b68f97bf88f99b9, https://usegalaxy.org/published/workflow?id=87685c6247521b54, https://usegalaxy.org/published/workflow?id=8b7e03f09b0183d9, https://usegalaxy.org/published/workflow?id=b2fb90873471f4e7, https://usegalaxy.org/published/workflow?id=be9bd7286d38c210, https://workflowhub.eu/workflows/1060?version=1, https://workflowhub.eu/workflows/1487?version=2, https://workflowhub.eu/workflows/1541?version=1, https://workflowhub.eu/workflows/1656?version=1, https://workflowhub.eu/workflows/358?version=1 |
ecology/phylogeny-data-prep, genome-annotation/hpc-for-lsgc, microbiome/pathogen-detection-from-nanopore-foodborne-data |
|
clustering_from_distmat |
clustering_from_distmat |
Distance matrix-based hierarchical clustering using SciPy |
2024-08-08 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/clustering_from_distmat/ |
1.1.1 |
python |
|
To update |
Statistics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/clustering_from_distmat/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/clustering_from_distmat |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
22 |
22 |
123 |
123 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
123 |
123 |
22 |
22 |
https://usegalaxy.eu/published/workflow?id=2b25eaebd3987612, https://usegalaxy.eu/published/workflow?id=461d71caea871db8, https://usegalaxy.eu/published/workflow?id=c38e3ac59d8b86d6 |
evolution/mtb_transmission |
|
cnv-vcf2json |
cnv_vcf2json |
cnv-vcf2json Converts structural variants VCF file to JSON. |
2024-02-27 |
https://pypi.org/project/cnv-phenopacket/ |
2.0.0 |
cnv-vcf2json |
|
To update |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnv-vcf2json |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/cnv-vcf2json |
|
|
|
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 |
7 |
13 |
13 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
13 |
7 |
7 |
https://usegalaxy.eu/published/workflow?id=07b440eec3ac7c2e |
variant-analysis/beaconise_1000hg |
|
cnv_phenopacket |
cnv_phenopacket |
cnv-phenopacket Converts TSV metadata file to JSON. |
2024-02-27 |
https://pypi.org/project/cnv-phenopacket/ |
1.0.2 |
cnv-phenopacket |
|
To update |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnv-phenopacket |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/cnv-phenopacket |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
5 |
7 |
7 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 |
7 |
5 |
5 |
|
variant-analysis/beaconise_1000hg |
|
cnvkit |
cnvkit_access, cnvkit_antitarget, cnvkit_autobin, cnvkit_batch, cnvkit_export_bed, cnvkit_breaks, cnvkit_call, cnvkit_export_cdt, cnvkit_coverage, cnvkit_diagram, cnvkit_fix, cnvkit_genemetrics, cnvkit_heatmap, cnvkit_export_jtv, cnvkit_export_nexus_basic, cnvkit_export_nexus_ogt, cnvkit_reference, cnvkit_scatter, cnvkit_export_seg, cnvkit_segment, cnvkit_segmetrics, cnvkit_sex, cnvkit_target, cnvkit_theta, cnvkit_export_vcf |
detecting copy number variants and alterations genome-wide from high-throughput sequencing |
2023-03-14 |
https://github.com/etal/cnvkit |
0.9.12 |
cnvkit |
0.9.12 |
Up-to-date |
Variant Analysis |
Variant calling |
Variant calling |
DNA structural variation |
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/cnvkit |
cnvkit |
CNVkit |
CNVkit is a software toolkit to infer and visualize copy number from targeted DNA sequencing data. |
|
0 |
25 |
25 |
25 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
17 |
0 |
0 |
48 |
48 |
1130 |
1130 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1130 |
1130 |
48 |
48 |
https://usegalaxy.eu/published/workflow?id=07b440eec3ac7c2e |
|
|
codeml |
codeml |
Detects positive selection |
2017-07-19 |
http://abacus.gene.ucl.ac.uk/software/paml.html |
4.9 |
paml |
4.10.9 |
To update |
Phylogenetics |
Probabilistic sequence generation, Phylogenetic tree generation (maximum likelihood and Bayesian methods), Phylogenetic tree analysis |
Probabilistic sequence generation |
Phylogenetics, Sequence analysis |
Phylogenetics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/codeml |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/codeml |
paml |
PAML |
Package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
66 |
73 |
62315 |
62370 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
62370 |
62315 |
73 |
66 |
|
|
|
cojac |
cooc_mutbamscan, cooc_pubmut, cooc_tabmut |
co-occurrence of mutations on amplicons |
2022-08-11 |
https://github.com/cbg-ethz/cojac |
0.9.3 |
cojac |
0.9.3 |
Up-to-date |
Metagenomics, Sequence Analysis |
|
|
Genetic variation |
Genetic variation |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/cojac |
cojac |
COJAC |
CoOccurrence adJusted Analysis and Calling - The cojac package comprises a set of command-line tools to analyse co-occurrence of mutations on amplicons. It is useful, for example, for early detection of viral variants of concern (e.g. Alpha, Delta, Omicron) in environmental samples, and has been designed to scan for multiple SARS-CoV-2 variants in wastewater samples, as analyzed jointly by ETH Zurich, EPFL and Eawag. |
|
2 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
12 |
12 |
2759 |
2759 |
7 |
7 |
20 |
20 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2779 |
2779 |
19 |
19 |
https://usegalaxy.eu/published/workflow?id=d88145e7475e0b7b |
|
|
colabfold |
colabfold_alphafold, colabfold_msa |
Protein prediction based on AlphaFold2 |
2024-03-24 |
https://github.com/sokrypton/ColabFold |
1.5.5 |
|
|
To update |
Proteomics, Graphics |
Database search, Protein structure prediction, Fold recognition |
Database search, Protein structure prediction, Fold recognition |
Protein folds and structural domains, Protein folding, stability and design, Structure prediction, Sequence sites, features and motifs, Metagenomics |
Protein folds and structural domains, Protein folding, stability and design, Structure prediction, Sequence sites, features and motifs, Metagenomics |
iuc |
https://github.com/sokrypton/ColabFold |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/colabfold |
Colabfold |
ColabFold |
ColabFold databases are MMseqs2 expandable profile databases to generate diverse multiple sequence alignments to predict protein structures. |
|
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
174 |
174 |
9177 |
9177 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
9177 |
9177 |
174 |
174 |
|
|
|
colibread |
commet, discosnp_rad, discosnp_pp, kissplice, lordec, mapsembler2, takeabreak |
Colib'read tools are all dedicated to the analysis of NGS datasets without the need of any reference genome |
2017-10-02 |
https://colibread.inria.fr/ |
24.7.14 |
commet |
24.7.14 |
Up-to-date |
Sequence Analysis, Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/colibread |
|
|
|
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
43 |
44 |
1362 |
1364 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
68 |
68 |
259 |
262 |
1626 |
1621 |
112 |
111 |
|
|
|
collection_column_join |
collection_column_join |
Column Join on Collections |
2016-05-26 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join |
0.0.3 |
coreutils |
8.25 |
To update |
Text Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_column_join |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/collection_column_join |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
4310 |
4568 |
25785 |
27569 |
4957 |
5592 |
22463 |
27003 |
778 |
816 |
3186 |
3399 |
720 |
720 |
3392 |
3392 |
61363 |
54826 |
11696 |
10765 |
https://dev.workflowhub.eu/workflows/1077?version=2, https://dev.workflowhub.eu/workflows/1087?version=2, https://dev.workflowhub.eu/workflows/1103?version=1, https://dev.workflowhub.eu/workflows/1120?version=1, https://dev.workflowhub.eu/workflows/1218?version=1, https://dev.workflowhub.eu/workflows/1295?version=1, https://dev.workflowhub.eu/workflows/1332?version=1, https://dev.workflowhub.eu/workflows/1391?version=1, https://usegalaxy.eu/published/workflow?id=0229f3f3835c2d53, https://usegalaxy.eu/published/workflow?id=0563f58718be932d, https://usegalaxy.eu/published/workflow?id=1502fd3fa90d32d8, https://usegalaxy.eu/published/workflow?id=1590085d315aa80e, https://usegalaxy.eu/published/workflow?id=1b49eda539658e53, https://usegalaxy.eu/published/workflow?id=1d2e17a4f71f2455, https://usegalaxy.eu/published/workflow?id=1e5f1d9a51032e44, https://usegalaxy.eu/published/workflow?id=21dd4bd16579fc12, https://usegalaxy.eu/published/workflow?id=29a855d928337f8f, https://usegalaxy.eu/published/workflow?id=2a73d658446747de, https://usegalaxy.eu/published/workflow?id=2f37c35ade97aa8d, https://usegalaxy.eu/published/workflow?id=300301c23327f797, https://usegalaxy.eu/published/workflow?id=31d9eb6a120411d6, https://usegalaxy.eu/published/workflow?id=344cd3a3c2ce5302, https://usegalaxy.eu/published/workflow?id=376119528377a3ae, https://usegalaxy.eu/published/workflow?id=385cc7df70d7916b, https://usegalaxy.eu/published/workflow?id=3f6c7249ef71ae41, https://usegalaxy.eu/published/workflow?id=443ea80b36d862f5, https://usegalaxy.eu/published/workflow?id=48fe9c4de045d414, https://usegalaxy.eu/published/workflow?id=4f245ac304ab76d9, https://usegalaxy.eu/published/workflow?id=535f777e5e42e98c, https://usegalaxy.eu/published/workflow?id=54467870b7c635f2, https://usegalaxy.eu/published/workflow?id=5aba0f20d994b1a4, https://usegalaxy.eu/published/workflow?id=60a45de522b8b695, https://usegalaxy.eu/published/workflow?id=62c47e3c9d4f3aa3, https://usegalaxy.eu/published/workflow?id=63749bd3045ccd4a, https://usegalaxy.eu/published/workflow?id=67e20e3082d24fbd, https://usegalaxy.eu/published/workflow?id=6fc2b9bea5b75a49, https://usegalaxy.eu/published/workflow?id=733650962d379da2, https://usegalaxy.eu/published/workflow?id=76d3408d0d22ad05, https://usegalaxy.eu/published/workflow?id=7ecd92cb382d8168, https://usegalaxy.eu/published/workflow?id=8bc1c3b9e665ea37, https://usegalaxy.eu/published/workflow?id=927d24dcde139b9c, https://usegalaxy.eu/published/workflow?id=9a1d17c12b139bda, https://usegalaxy.eu/published/workflow?id=9a52516ec0b539ea, https://usegalaxy.eu/published/workflow?id=9e03cf8cd5e5de08, https://usegalaxy.eu/published/workflow?id=9e31c51911987687, https://usegalaxy.eu/published/workflow?id=a35e0c2fcba4e95f, https://usegalaxy.eu/published/workflow?id=a461ea397418f3aa, https://usegalaxy.eu/published/workflow?id=a705370bc2c13d5c, https://usegalaxy.eu/published/workflow?id=ab6e6ffaaebab45b, https://usegalaxy.eu/published/workflow?id=b14845359b702444, https://usegalaxy.eu/published/workflow?id=b4ed2a3690da0196, https://usegalaxy.eu/published/workflow?id=bbe2a1615c8faaae, https://usegalaxy.eu/published/workflow?id=c6b22fc33b569c8f, https://usegalaxy.eu/published/workflow?id=c8bc4af6dd3b5d02, https://usegalaxy.eu/published/workflow?id=ca9d3233b0912765, https://usegalaxy.eu/published/workflow?id=cae527ce845e770e, https://usegalaxy.eu/published/workflow?id=cb2df493f5e334f7, https://usegalaxy.eu/published/workflow?id=d1338e2b4002a364, https://usegalaxy.eu/published/workflow?id=d3dfe7ba11508c72, https://usegalaxy.eu/published/workflow?id=d9f8c5d575da02b1, https://usegalaxy.eu/published/workflow?id=dbcf7af09e036754, https://usegalaxy.eu/published/workflow?id=dd8b55e7768843b1, https://usegalaxy.eu/published/workflow?id=de3eafbcf42c75bb, https://usegalaxy.eu/published/workflow?id=e6c5fb1d37d29ec0, https://usegalaxy.eu/published/workflow?id=e85c9385870aadcc, https://usegalaxy.eu/published/workflow?id=e91def3fc9738ebb, https://usegalaxy.eu/published/workflow?id=eb8168bc01249596, https://usegalaxy.eu/published/workflow?id=f28459c5b16549b7, https://usegalaxy.eu/published/workflow?id=f6a763951d815944, https://usegalaxy.eu/published/workflow?id=fd90652d475ed739, https://usegalaxy.eu/published/workflow?id=fe64d430d50faf0b, https://usegalaxy.fr/published/workflow?id=0f6714dbdb90b6aa, https://usegalaxy.fr/published/workflow?id=5d83e0886f2a7465, https://usegalaxy.fr/published/workflow?id=5e49933a687c2b46, https://usegalaxy.fr/published/workflow?id=6d2945d35fa956c8, https://usegalaxy.fr/published/workflow?id=72b531d980acaa6c, https://usegalaxy.fr/published/workflow?id=826cffb2458e4067, https://usegalaxy.fr/published/workflow?id=e0bad0b97ee71577, https://usegalaxy.org.au/published/workflow?id=1801a8b74c35340f, https://usegalaxy.org.au/published/workflow?id=25d52afddaa3451b, https://usegalaxy.org.au/published/workflow?id=69d91340fc7effa2, https://usegalaxy.org.au/published/workflow?id=a335b9c9103b57ad, https://usegalaxy.org.au/published/workflow?id=af7b95f46485308c, https://usegalaxy.org.au/published/workflow?id=b60922a253df6654, https://usegalaxy.org.au/published/workflow?id=eda40b58616a0fe4, https://usegalaxy.org/published/workflow?id=00a501a1fada4104, https://usegalaxy.org/published/workflow?id=07fdeadce7a6d5cb, https://usegalaxy.org/published/workflow?id=173ecc0c88090d0e, https://usegalaxy.org/published/workflow?id=204d0da8a023d7da, https://usegalaxy.org/published/workflow?id=228ae7f537a60226, https://usegalaxy.org/published/workflow?id=2d3063882d8239ff, https://usegalaxy.org/published/workflow?id=36a92f1f6d2212a4, https://usegalaxy.org/published/workflow?id=3ef08553982f6ffc, https://usegalaxy.org/published/workflow?id=427fce51fd9508eb, https://usegalaxy.org/published/workflow?id=43c39bc86399188f, https://usegalaxy.org/published/workflow?id=4a50ce0e9f4d4bb8, https://usegalaxy.org/published/workflow?id=574e42683dc3961b, https://usegalaxy.org/published/workflow?id=5944c5effd56b0d6, https://usegalaxy.org/published/workflow?id=6d0a3f36d2736087, https://usegalaxy.org/published/workflow?id=734e08331f8f34b7, https://usegalaxy.org/published/workflow?id=82973143b28bb767, https://usegalaxy.org/published/workflow?id=93650de42fb8c015, https://usegalaxy.org/published/workflow?id=93bfbd7db42db543, https://usegalaxy.org/published/workflow?id=a89def2c2462674a, https://usegalaxy.org/published/workflow?id=a8b9252fad5fe06a, https://usegalaxy.org/published/workflow?id=aac2ae0419f7d515, https://usegalaxy.org/published/workflow?id=b094b6e1e7d48416, https://usegalaxy.org/published/workflow?id=b2e81f82ccf3afd6, https://usegalaxy.org/published/workflow?id=b3823d276917baf0, https://usegalaxy.org/published/workflow?id=b76c55dafd44b305, https://usegalaxy.org/published/workflow?id=badd4b56dbdeaba7, https://usegalaxy.org/published/workflow?id=cd431e5f912d3616, https://usegalaxy.org/published/workflow?id=d5514e327878b531, https://usegalaxy.org/published/workflow?id=d82db9c29b998f22, https://usegalaxy.org/published/workflow?id=d8afd017905d6702, https://usegalaxy.org/published/workflow?id=dab54002b3c0e351, https://usegalaxy.org/published/workflow?id=ddb737f2ad0589e8, https://usegalaxy.org/published/workflow?id=e04f443a8ceca0d2, https://usegalaxy.org/published/workflow?id=e12324f5e3b930fd, https://usegalaxy.org/published/workflow?id=fb903de4aa4d5090, https://workflowhub.eu/workflows/1060?version=1, https://workflowhub.eu/workflows/1061?version=1, https://workflowhub.eu/workflows/1199?version=2, https://workflowhub.eu/workflows/123?version=1, https://workflowhub.eu/workflows/1269?version=2, https://workflowhub.eu/workflows/1275?version=2, https://workflowhub.eu/workflows/1296?version=2, https://workflowhub.eu/workflows/1352?version=3, https://workflowhub.eu/workflows/1390?version=2, https://workflowhub.eu/workflows/1487?version=2, https://workflowhub.eu/workflows/1491?version=1, https://workflowhub.eu/workflows/1492?version=2, https://workflowhub.eu/workflows/1571?version=1, https://workflowhub.eu/workflows/1634?version=1, https://workflowhub.eu/workflows/1684?version=1, https://workflowhub.eu/workflows/1692?version=1, https://workflowhub.eu/workflows/689?version=1 |
assembly/metagenomics-assembly, assembly/vgp_genome_assembly, microbiome/metagenomics-assembly, microbiome/pathogen-detection-from-nanopore-foodborne-data, single-cell/bulk-deconvolution-evaluate, single-cell/scrna-preprocessing, transcriptomics/minerva-pathways, transcriptomics/rna-seq-reads-to-counts |
|
collection_element_identifiers |
collection_element_identifiers |
Extract element identifiers of a collection |
2018-06-13 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers |
0.0.2 |
|
|
To update |
Text Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/collection_element_identifiers |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1849 |
1882 |
9259 |
9511 |
2235 |
2235 |
8727 |
8729 |
281 |
281 |
1334 |
1334 |
291 |
291 |
2379 |
2379 |
21953 |
21699 |
4689 |
4656 |
https://dev.workflowhub.eu/workflows/1001?version=1, https://dev.workflowhub.eu/workflows/1091?version=1, https://dev.workflowhub.eu/workflows/1105?version=2, https://dev.workflowhub.eu/workflows/1292?version=2, https://dev.workflowhub.eu/workflows/1324?version=3, https://dev.workflowhub.eu/workflows/1326?version=3, https://dev.workflowhub.eu/workflows/1395?version=1, https://usegalaxy.eu/published/workflow?id=035f85c1615e0b7b, https://usegalaxy.eu/published/workflow?id=04df470a38b10e94, https://usegalaxy.eu/published/workflow?id=08e25b733cd796e6, https://usegalaxy.eu/published/workflow?id=1f9a9a7998ef5ab3, https://usegalaxy.eu/published/workflow?id=20ada53472782c9b, https://usegalaxy.eu/published/workflow?id=250e6058f160825f, https://usegalaxy.eu/published/workflow?id=2c79eee5ca5a3b09, https://usegalaxy.eu/published/workflow?id=30623c815283da67, https://usegalaxy.eu/published/workflow?id=43098b8afe78b071, https://usegalaxy.eu/published/workflow?id=47a0407867a90f95, https://usegalaxy.eu/published/workflow?id=52cb9bacc26b013e, https://usegalaxy.eu/published/workflow?id=585c21b7b1d864fc, https://usegalaxy.eu/published/workflow?id=5d401d357500617f, https://usegalaxy.eu/published/workflow?id=60b14522152d2c0b, https://usegalaxy.eu/published/workflow?id=61fe08fb3d5e83f8, https://usegalaxy.eu/published/workflow?id=6e1fe7372e93fae0, https://usegalaxy.eu/published/workflow?id=77e5bbd317750915, https://usegalaxy.eu/published/workflow?id=83c5bf0208f4d217, https://usegalaxy.eu/published/workflow?id=a15dabcadb63b46d, https://usegalaxy.eu/published/workflow?id=a31100610fba17a1, https://usegalaxy.eu/published/workflow?id=a8c8da047f418380, https://usegalaxy.eu/published/workflow?id=aa5b077da1d36b23, https://usegalaxy.eu/published/workflow?id=ada52ba09b462567, https://usegalaxy.eu/published/workflow?id=b0377f05f97b18b1, https://usegalaxy.eu/published/workflow?id=b14845359b702444, https://usegalaxy.eu/published/workflow?id=b1f68ff8158d0b85, https://usegalaxy.eu/published/workflow?id=b2975bb705d3e851, https://usegalaxy.eu/published/workflow?id=b77e3b08092fa73e, https://usegalaxy.eu/published/workflow?id=b7a3cbcd32734e8b, https://usegalaxy.eu/published/workflow?id=c3a11e1ac1aa8383, https://usegalaxy.eu/published/workflow?id=c58941443cec9380, https://usegalaxy.eu/published/workflow?id=c5e6047b3b256b06, https://usegalaxy.eu/published/workflow?id=c789ab71876c6ead, https://usegalaxy.eu/published/workflow?id=c7b9fb6872444809, https://usegalaxy.eu/published/workflow?id=c7f34c67c9054234, https://usegalaxy.eu/published/workflow?id=cb2df493f5e334f7, https://usegalaxy.eu/published/workflow?id=ccef778cfd9024d1, https://usegalaxy.eu/published/workflow?id=cd25f70f71683ab6, https://usegalaxy.eu/published/workflow?id=ce5c9287a67e6085, https://usegalaxy.eu/published/workflow?id=d1b3b62e7f91e217, https://usegalaxy.eu/published/workflow?id=d20fbb95f15386f5, https://usegalaxy.eu/published/workflow?id=d9fa202d2ff28108, https://usegalaxy.eu/published/workflow?id=e04be1ab5a16eb9f, https://usegalaxy.eu/published/workflow?id=fb806b88850f3427, https://usegalaxy.fr/published/workflow?id=8b1678200a1d157a, https://usegalaxy.org.au/published/workflow?id=084bb76cf47d7060, https://usegalaxy.org.au/published/workflow?id=2df1d32f78974528, https://usegalaxy.org.au/published/workflow?id=3c1bf73067334071, https://usegalaxy.org.au/published/workflow?id=5fe66b29dcfb22ab, https://usegalaxy.org.au/published/workflow?id=6b1b0a945d367b4c, https://usegalaxy.org.au/published/workflow?id=75113a1b41904d2a, https://usegalaxy.org.au/published/workflow?id=85aede91db0122e4, https://usegalaxy.org.au/published/workflow?id=92fcdd490831c6c5, https://usegalaxy.org.au/published/workflow?id=a335b9c9103b57ad, https://usegalaxy.org.au/published/workflow?id=b432a1312859edd2, https://usegalaxy.org.au/published/workflow?id=ce7f6a1c824920e2, https://usegalaxy.org.au/published/workflow?id=e1fd89e7248b6661, https://usegalaxy.org.au/published/workflow?id=ef8c22c2525063a2, https://usegalaxy.org.au/published/workflow?id=f946d722f7c27479, https://usegalaxy.org/published/workflow?id=0dc387dc861bdb61, https://usegalaxy.org/published/workflow?id=13a3954b8894e1b1, https://usegalaxy.org/published/workflow?id=1518c8c50747a1c1, https://usegalaxy.org/published/workflow?id=19fcce20ecaf2ef6, https://usegalaxy.org/published/workflow?id=3f252e077e0bcce5, https://usegalaxy.org/published/workflow?id=45f959d5bf505b15, https://usegalaxy.org/published/workflow?id=4ca9319c98be08f8, https://usegalaxy.org/published/workflow?id=4faff660f6defa10, https://usegalaxy.org/published/workflow?id=76b2c4762dd61d03, https://usegalaxy.org/published/workflow?id=8151be18aab3a3c6, https://usegalaxy.org/published/workflow?id=8e1c6ad6ff623015, https://usegalaxy.org/published/workflow?id=929b7a83015fdcda, https://usegalaxy.org/published/workflow?id=97263f3308077ff0, https://usegalaxy.org/published/workflow?id=abf1aec0f3d48d03, https://usegalaxy.org/published/workflow?id=b92e0ee710d167b2, https://usegalaxy.org/published/workflow?id=cce88bc57b180d09, https://usegalaxy.org/published/workflow?id=cdf5dffbed938d49, https://usegalaxy.org/published/workflow?id=d73c60e406aff265, https://usegalaxy.org/published/workflow?id=e7ce46762faccaac, https://workflowhub.eu/workflows/1062?version=1, https://workflowhub.eu/workflows/1078?version=1, https://workflowhub.eu/workflows/1199?version=2, https://workflowhub.eu/workflows/1207?version=2, https://workflowhub.eu/workflows/1259?version=1, https://workflowhub.eu/workflows/1260?version=2, https://workflowhub.eu/workflows/1270?version=2, https://workflowhub.eu/workflows/1273?version=2, https://workflowhub.eu/workflows/1395?version=2, https://workflowhub.eu/workflows/1495?version=1, https://workflowhub.eu/workflows/1561?version=1, https://workflowhub.eu/workflows/1635?version=1, https://workflowhub.eu/workflows/1688?version=1, https://workflowhub.eu/workflows/1713?version=1, https://workflowhub.eu/workflows/1745?version=2, https://workflowhub.eu/workflows/439?version=3 |
ecology/ENA_Biodiv_submission, microbiome/dada-16S, microbiome/pathogen-detection-from-nanopore-foodborne-data, sequence-analysis/Manage_AB1_Sanger, single-cell/scatac-batch-correction-snapatac2, transcriptomics/differential-isoform-expression, transcriptomics/ref-based |
|
column_maker |
Add_a_column1 |
Compute an expression on every row |
2019-06-24 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/column_maker |
2.1 |
python |
|
To update |
Text Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/column_maker |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/column_maker |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
5851 |
6834 |
2947795 |
3916979 |
6301 |
14428 |
263706 |
744285 |
938 |
1078 |
97064 |
98480 |
203 |
205 |
10048 |
10193 |
4769937 |
3318613 |
22545 |
13293 |
https://dev.workflowhub.eu/workflows/1002?version=1, https://dev.workflowhub.eu/workflows/1078?version=1, https://dev.workflowhub.eu/workflows/1087?version=2, https://dev.workflowhub.eu/workflows/1090?version=2, https://dev.workflowhub.eu/workflows/1105?version=2, https://dev.workflowhub.eu/workflows/1140?version=2, https://dev.workflowhub.eu/workflows/1149?version=2, https://dev.workflowhub.eu/workflows/1173?version=2, https://dev.workflowhub.eu/workflows/1187?version=2, https://dev.workflowhub.eu/workflows/1206?version=1, https://dev.workflowhub.eu/workflows/1316?version=1, https://dev.workflowhub.eu/workflows/1324?version=3, https://dev.workflowhub.eu/workflows/1326?version=3, https://dev.workflowhub.eu/workflows/1332?version=1, https://dev.workflowhub.eu/workflows/1380?version=1, https://dev.workflowhub.eu/workflows/1391?version=1, https://dev.workflowhub.eu/workflows/1392?version=1, https://dev.workflowhub.eu/workflows/1440?version=1, https://dev.workflowhub.eu/workflows/1441?version=1, https://dev.workflowhub.eu/workflows/194?version=2, https://dev.workflowhub.eu/workflows/199?version=2, https://usegalaxy.eu/published/workflow?id=002a51bdef00e14d, https://usegalaxy.eu/published/workflow?id=013cc98f55b01d5d, https://usegalaxy.eu/published/workflow?id=01fe4c590e608103, https://usegalaxy.eu/published/workflow?id=023a0ee62dd1f593, https://usegalaxy.eu/published/workflow?id=032a7281a86eba0d, https://usegalaxy.eu/published/workflow?id=032ad839dab7ae70, https://usegalaxy.eu/published/workflow?id=036990ecf300a99f, https://usegalaxy.eu/published/workflow?id=03bb4c20a1f4b4de, https://usegalaxy.eu/published/workflow?id=03be9d62e8e4a129, https://usegalaxy.eu/published/workflow?id=0444c98a3ca2a3ca, https://usegalaxy.eu/published/workflow?id=05bd1d9c61df5d16, https://usegalaxy.eu/published/workflow?id=06544e74f583fd05, https://usegalaxy.eu/published/workflow?id=085c3a4c89d137b5, https://usegalaxy.eu/published/workflow?id=089e5e83b1de0511, https://usegalaxy.eu/published/workflow?id=098f43ded1b5fa7f, https://usegalaxy.eu/published/workflow?id=0a3ebee985c26060, https://usegalaxy.eu/published/workflow?id=0c94260298199d8b, https://usegalaxy.eu/published/workflow?id=0de5fcc38ef1501d, https://usegalaxy.eu/published/workflow?id=0f207a15b6f7fa10, https://usegalaxy.eu/published/workflow?id=1089e5c66dbcc1a3, https://usegalaxy.eu/published/workflow?id=111527fe542846af, https://usegalaxy.eu/published/workflow?id=1151052f4393852a, https://usegalaxy.eu/published/workflow?id=12b0bd336c76a874, https://usegalaxy.eu/published/workflow?id=12bf85cdc8102bb5, https://usegalaxy.eu/published/workflow?id=1483534f49b826bf, https://usegalaxy.eu/published/workflow?id=152223c8aed27357, https://usegalaxy.eu/published/workflow?id=16418e8b023ff226, https://usegalaxy.eu/published/workflow?id=1749616cec69fb00, https://usegalaxy.eu/published/workflow?id=17ad465d9515cd25, https://usegalaxy.eu/published/workflow?id=194a05d42687b524, https://usegalaxy.eu/published/workflow?id=1ac0a15758277730, https://usegalaxy.eu/published/workflow?id=1af73dc855d0a5ed, https://usegalaxy.eu/published/workflow?id=1bb084f1bc102734, https://usegalaxy.eu/published/workflow?id=1ce406de61de8492, https://usegalaxy.eu/published/workflow?id=1d1ae39386b5c318, https://usegalaxy.eu/published/workflow?id=1da7ac8eaf891f39, https://usegalaxy.eu/published/workflow?id=1da86d74f8535f4e, https://usegalaxy.eu/published/workflow?id=1e02a7292e9974b1, https://usegalaxy.eu/published/workflow?id=1e7f4ba6261f979c, https://usegalaxy.eu/published/workflow?id=1f2a1438e41188f2, https://usegalaxy.eu/published/workflow?id=20592f292c205954, https://usegalaxy.eu/published/workflow?id=20ada53472782c9b, https://usegalaxy.eu/published/workflow?id=21a3f72851f29925, https://usegalaxy.eu/published/workflow?id=220961d803697f54, https://usegalaxy.eu/published/workflow?id=2294ef9515bcf972, https://usegalaxy.eu/published/workflow?id=2424282f793f0f1b, https://usegalaxy.eu/published/workflow?id=2465df635cd0dacc, https://usegalaxy.eu/published/workflow?id=2671a5f85b2cccfe, https://usegalaxy.eu/published/workflow?id=270b6f82efab28b2, https://usegalaxy.eu/published/workflow?id=27fca972f1d1a312, https://usegalaxy.eu/published/workflow?id=2880a32a52d27743, https://usegalaxy.eu/published/workflow?id=29c97d43eeb8ed63, https://usegalaxy.eu/published/workflow?id=2c3d05023c02113e, https://usegalaxy.eu/published/workflow?id=2d0400b5d05c6c10, https://usegalaxy.eu/published/workflow?id=2d509fad86eb97fb, https://usegalaxy.eu/published/workflow?id=2d9d4445a1871230, https://usegalaxy.eu/published/workflow?id=2e93613c688ea52e, https://usegalaxy.eu/published/workflow?id=2f51a82838722bec, https://usegalaxy.eu/published/workflow?id=309969a261189b5f, https://usegalaxy.eu/published/workflow?id=30e7dc81e323cbdb, https://usegalaxy.eu/published/workflow?id=3192f92ac4d389b8, https://usegalaxy.eu/published/workflow?id=31c6dcd3a25620df, https://usegalaxy.eu/published/workflow?id=342a5df69951e3d7, https://usegalaxy.eu/published/workflow?id=344cd3a3c2ce5302, https://usegalaxy.eu/published/workflow?id=379642036b6f5a66, https://usegalaxy.eu/published/workflow?id=37b04b02ec08e84f, https://usegalaxy.eu/published/workflow?id=389d992ff7268247, https://usegalaxy.eu/published/workflow?id=38f12705279b5dfa, https://usegalaxy.eu/published/workflow?id=399048afb4acef3d, https://usegalaxy.eu/published/workflow?id=3a3e2d50fe7a9ee3, https://usegalaxy.eu/published/workflow?id=3aaea772745ca295, https://usegalaxy.eu/published/workflow?id=3cf3dd9727b7ac92, https://usegalaxy.eu/published/workflow?id=3e255a5b7026d26e, https://usegalaxy.eu/published/workflow?id=3eb6663a66f8e69a, https://usegalaxy.eu/published/workflow?id=3f5414bb38b47fcf, https://usegalaxy.eu/published/workflow?id=416141b245073406, https://usegalaxy.eu/published/workflow?id=429ae28a178cd07c, https://usegalaxy.eu/published/workflow?id=4516fe237a7112cc, https://usegalaxy.eu/published/workflow?id=45f63151bf4f1a49, https://usegalaxy.eu/published/workflow?id=475ea16f943cc013, https://usegalaxy.eu/published/workflow?id=476db04368d5e90c, https://usegalaxy.eu/published/workflow?id=4856e3522b2ee059, https://usegalaxy.eu/published/workflow?id=497b82d3b92dc076, https://usegalaxy.eu/published/workflow?id=4c3a9b574f37eebb, https://usegalaxy.eu/published/workflow?id=4d41ee83fc0040d4, https://usegalaxy.eu/published/workflow?id=4d97068a725c975c, https://usegalaxy.eu/published/workflow?id=4daa0c33d6d50379, https://usegalaxy.eu/published/workflow?id=51cce3b98da3e822, https://usegalaxy.eu/published/workflow?id=522500fac247be6f, https://usegalaxy.eu/published/workflow?id=529f30e894beacc2, https://usegalaxy.eu/published/workflow?id=54590ccd11ffbf65, https://usegalaxy.eu/published/workflow?id=54b91dd86f463391, https://usegalaxy.eu/published/workflow?id=57cc33ed64d71982, https://usegalaxy.eu/published/workflow?id=5ad406442ec21345, https://usegalaxy.eu/published/workflow?id=5bf6718e7d6158d2, https://usegalaxy.eu/published/workflow?id=5ded4002e684a02c, https://usegalaxy.eu/published/workflow?id=5e1906290f5b4d8a, https://usegalaxy.eu/published/workflow?id=5ec0d6d108e02e1a, https://usegalaxy.eu/published/workflow?id=5ed38d8114bcd6f7, https://usegalaxy.eu/published/workflow?id=5f29105e842716db, https://usegalaxy.eu/published/workflow?id=63c91ea322cd2819, https://usegalaxy.eu/published/workflow?id=65612d13b50547c8, https://usegalaxy.eu/published/workflow?id=6573f3b1606b7f09, https://usegalaxy.eu/published/workflow?id=668a9f5da768fa30, https://usegalaxy.eu/published/workflow?id=6865f33cffca4922, https://usegalaxy.eu/published/workflow?id=68e8042f11d5a3fd, https://usegalaxy.eu/published/workflow?id=69cdd404592535ec, https://usegalaxy.eu/published/workflow?id=6c14b08a7ef7e79a, https://usegalaxy.eu/published/workflow?id=6c91fe92ef069d64, https://usegalaxy.eu/published/workflow?id=6e0330de5d80e619, https://usegalaxy.eu/published/workflow?id=6ed1016dfdf9f928, https://usegalaxy.eu/published/workflow?id=700fa3ab11a8f3e2, https://usegalaxy.eu/published/workflow?id=70ec8b1719e25982, https://usegalaxy.eu/published/workflow?id=71a6d128a09210f0, https://usegalaxy.eu/published/workflow?id=732fa536cdc70c96, https://usegalaxy.eu/published/workflow?id=7337d15d121596da, https://usegalaxy.eu/published/workflow?id=76d3408d0d22ad05, https://usegalaxy.eu/published/workflow?id=7878623b7e959284, https://usegalaxy.eu/published/workflow?id=79b5afb125e3c3da, https://usegalaxy.eu/published/workflow?id=7b7d6a5c6c65d74b, https://usegalaxy.eu/published/workflow?id=7caa58e36df6ad03, https://usegalaxy.eu/published/workflow?id=7e0ba4c14803448e, https://usegalaxy.eu/published/workflow?id=8132c3b710fd6d48, https://usegalaxy.eu/published/workflow?id=82ef590b5821805d, https://usegalaxy.eu/published/workflow?id=847403b72dd346ff, https://usegalaxy.eu/published/workflow?id=86900be4282d4b1d, https://usegalaxy.eu/published/workflow?id=88f5cef7e4146520, https://usegalaxy.eu/published/workflow?id=8be366ad6a42408b, https://usegalaxy.eu/published/workflow?id=8d00a8b70b0c019c, https://usegalaxy.eu/published/workflow?id=8f105de48f7f1d9d, https://usegalaxy.eu/published/workflow?id=915ffef5b14c871e, https://usegalaxy.eu/published/workflow?id=92dafb3d1c06e074, https://usegalaxy.eu/published/workflow?id=93a7047396080fda, https://usegalaxy.eu/published/workflow?id=94b9287365ea4d0d, https://usegalaxy.eu/published/workflow?id=95f420d8856bf725, https://usegalaxy.eu/published/workflow?id=9667bf36217083b7, https://usegalaxy.eu/published/workflow?id=97bff2c5f4556a3c, https://usegalaxy.eu/published/workflow?id=99c4dce722c023d1, https://usegalaxy.eu/published/workflow?id=9aa290ce1927d700, https://usegalaxy.eu/published/workflow?id=9ac74bd7d1000093, https://usegalaxy.eu/published/workflow?id=9c0b67496dfe52b2, https://usegalaxy.eu/published/workflow?id=9c5a0596956064a6, https://usegalaxy.eu/published/workflow?id=9c7a218993788493, https://usegalaxy.eu/published/workflow?id=9d209bcdae1a475e, https://usegalaxy.eu/published/workflow?id=9e0d784860d6cc91, https://usegalaxy.eu/published/workflow?id=9eb29cc96d8d75c2, https://usegalaxy.eu/published/workflow?id=9f2d18f0d0896e8b, https://usegalaxy.eu/published/workflow?id=a2b386eef5645acd, https://usegalaxy.eu/published/workflow?id=a2c46deea34d9d80, https://usegalaxy.eu/published/workflow?id=a2d4221ad117c378, https://usegalaxy.eu/published/workflow?id=a3f082ff30357040, https://usegalaxy.eu/published/workflow?id=a6a36943accc9b7d, https://usegalaxy.eu/published/workflow?id=a705370bc2c13d5c, https://usegalaxy.eu/published/workflow?id=aa6dc57f5c67fb4b, https://usegalaxy.eu/published/workflow?id=aada0111f835ce49, https://usegalaxy.eu/published/workflow?id=ac6eb99f70d35999, https://usegalaxy.eu/published/workflow?id=ade6f36f6a035a73, https://usegalaxy.eu/published/workflow?id=ae74f60cd20d56bc, https://usegalaxy.eu/published/workflow?id=aef62f4d0bba003b, https://usegalaxy.eu/published/workflow?id=b4948afacccfefdb, https://usegalaxy.eu/published/workflow?id=b5de94e9cde071ab, https://usegalaxy.eu/published/workflow?id=b86f3775aa1f13bc, https://usegalaxy.eu/published/workflow?id=b8baade87e733fce, https://usegalaxy.eu/published/workflow?id=b8fc492025ad6ff0, https://usegalaxy.eu/published/workflow?id=bac84a7033c3423f, https://usegalaxy.eu/published/workflow?id=bcf99cc0469db276, https://usegalaxy.eu/published/workflow?id=bef0a7d604f2ebef, https://usegalaxy.eu/published/workflow?id=c4c2e669b86cffbc, https://usegalaxy.eu/published/workflow?id=c508c00e81018dd8, https://usegalaxy.eu/published/workflow?id=c5e6047b3b256b06, https://usegalaxy.eu/published/workflow?id=c832ecfa83bcda14, https://usegalaxy.eu/published/workflow?id=c917db7d7ba7ea6f, https://usegalaxy.eu/published/workflow?id=c9aff55e39e195e3, https://usegalaxy.eu/published/workflow?id=c9f83ce86d407902, https://usegalaxy.eu/published/workflow?id=ca39822372847670, https://usegalaxy.eu/published/workflow?id=cc2bc81352d2e2cd, https://usegalaxy.eu/published/workflow?id=cc385bd4376a907c, https://usegalaxy.eu/published/workflow?id=ce1712139b4a4273, https://usegalaxy.eu/published/workflow?id=d02458f1d7d9c3f4, https://usegalaxy.eu/published/workflow?id=d12617d0df5f81d0, https://usegalaxy.eu/published/workflow?id=d172f927a489e9f8, https://usegalaxy.eu/published/workflow?id=d17d6029914d666b, https://usegalaxy.eu/published/workflow?id=d1bd5d8597c1d31d, https://usegalaxy.eu/published/workflow?id=d261bbd05889ce75, https://usegalaxy.eu/published/workflow?id=d3a8741131485af2, https://usegalaxy.eu/published/workflow?id=d52ff93f4ffdd981, https://usegalaxy.eu/published/workflow?id=d67299c34e63f3d9, https://usegalaxy.eu/published/workflow?id=d83280cd72ec0f33, https://usegalaxy.eu/published/workflow?id=d924fafd8e042952, https://usegalaxy.eu/published/workflow?id=dc27453c438577f6, https://usegalaxy.eu/published/workflow?id=de9cf573314f416c, https://usegalaxy.eu/published/workflow?id=df08e520ec3dbcb7, https://usegalaxy.eu/published/workflow?id=e138640778b7414c, https://usegalaxy.eu/published/workflow?id=e7aebe58411d97ed, https://usegalaxy.eu/published/workflow?id=e7e26967cf6cb8d8, https://usegalaxy.eu/published/workflow?id=e8f9e1d911683b22, https://usegalaxy.eu/published/workflow?id=e935d2c8ffb52588, https://usegalaxy.eu/published/workflow?id=eb03839cc36048f5, https://usegalaxy.eu/published/workflow?id=ec0d89aa1e6674e4, https://usegalaxy.eu/published/workflow?id=ec79f14ab91cd933, https://usegalaxy.eu/published/workflow?id=efb58bba65393347, https://usegalaxy.eu/published/workflow?id=f08b29e4cef76cd5, https://usegalaxy.eu/published/workflow?id=f14ebad1c3c20067, https://usegalaxy.eu/published/workflow?id=f1ca4289ee4f67bb, https://usegalaxy.eu/published/workflow?id=f38745208494d4ab, https://usegalaxy.eu/published/workflow?id=f3e17c8dd80def27, https://usegalaxy.eu/published/workflow?id=f578a097b4339025, https://usegalaxy.eu/published/workflow?id=f774cf05ddff3612, https://usegalaxy.eu/published/workflow?id=f7cdaf862e6599c0, https://usegalaxy.eu/published/workflow?id=f882d14fc5dabbb9, https://usegalaxy.eu/published/workflow?id=f91245e580319e65, https://usegalaxy.eu/published/workflow?id=fa83e26e05418370, https://usegalaxy.eu/published/workflow?id=fb015e398373ea8a, https://usegalaxy.eu/published/workflow?id=fc25c1f8c6667c87, https://usegalaxy.eu/published/workflow?id=fd649ac4d4872c81, https://usegalaxy.eu/published/workflow?id=ff2fd4a4bb27d859, https://usegalaxy.fr/published/workflow?id=0df61a88d64de252, https://usegalaxy.fr/published/workflow?id=27682f0045c41ebf, https://usegalaxy.fr/published/workflow?id=61235264d5d2f666, https://usegalaxy.fr/published/workflow?id=798c8ff19825ab2c, https://usegalaxy.fr/published/workflow?id=a3e9062133fdf7c2, https://usegalaxy.fr/published/workflow?id=b168a179d1b456cb, https://usegalaxy.fr/published/workflow?id=bf8ffe72b7ce4570, https://usegalaxy.fr/published/workflow?id=e3c04a30258421aa, https://usegalaxy.org.au/published/workflow?id=000c2f1884bc4687, https://usegalaxy.org.au/published/workflow?id=02eebe3d909206ab, https://usegalaxy.org.au/published/workflow?id=04c9266c6a863fab, https://usegalaxy.org.au/published/workflow?id=053c054592b08dce, https://usegalaxy.org.au/published/workflow?id=06564b19b0655c19, https://usegalaxy.org.au/published/workflow?id=0810be3d7d2b0322, https://usegalaxy.org.au/published/workflow?id=08fac3b4c128e597, https://usegalaxy.org.au/published/workflow?id=09f0170639c978e8, https://usegalaxy.org.au/published/workflow?id=0af0ea50f1237952, https://usegalaxy.org.au/published/workflow?id=0c11e1ba5e8fa21b, https://usegalaxy.org.au/published/workflow?id=0df25e2dbd5e8ed5, https://usegalaxy.org.au/published/workflow?id=10355b2680374a03, https://usegalaxy.org.au/published/workflow?id=12d36e402f858c65, https://usegalaxy.org.au/published/workflow?id=16c6c253e009cc0d, https://usegalaxy.org.au/published/workflow?id=1764bb1f506212e8, https://usegalaxy.org.au/published/workflow?id=1782d699b0166725, https://usegalaxy.org.au/published/workflow?id=1905ec04d5841f09, https://usegalaxy.org.au/published/workflow?id=1ce2a725df3adb74, https://usegalaxy.org.au/published/workflow?id=1dcc1b25c9091fbf, https://usegalaxy.org.au/published/workflow?id=1eb3e1452c672480, https://usegalaxy.org.au/published/workflow?id=1f49c65625b9d2de, https://usegalaxy.org.au/published/workflow?id=2356584eac7fa234, https://usegalaxy.org.au/published/workflow?id=2470cb61ba51288c, https://usegalaxy.org.au/published/workflow?id=25d52afddaa3451b, https://usegalaxy.org.au/published/workflow?id=2955ea7be1cdda29, https://usegalaxy.org.au/published/workflow?id=2b71eb1dc2aa28a1, https://usegalaxy.org.au/published/workflow?id=2cef9a1633e0a067, https://usegalaxy.org.au/published/workflow?id=2d45d7138d8715b4, https://usegalaxy.org.au/published/workflow?id=2f6e22de138a64eb, https://usegalaxy.org.au/published/workflow?id=2fc7d396ef610ed8, https://usegalaxy.org.au/published/workflow?id=2fee25e188531691, https://usegalaxy.org.au/published/workflow?id=319e9d693fac8dce, https://usegalaxy.org.au/published/workflow?id=328adfa7d90b1d54, https://usegalaxy.org.au/published/workflow?id=3604307ec2835628, https://usegalaxy.org.au/published/workflow?id=36f54eda8568355d, https://usegalaxy.org.au/published/workflow?id=371c9892d261cee2, https://usegalaxy.org.au/published/workflow?id=3df7f45b7b388f8c, https://usegalaxy.org.au/published/workflow?id=40666ceb68d101ac, https://usegalaxy.org.au/published/workflow?id=40740c32b9a550c9, https://usegalaxy.org.au/published/workflow?id=41282d51f9112552, https://usegalaxy.org.au/published/workflow?id=41795303a88d9e94, https://usegalaxy.org.au/published/workflow?id=4267bd1e4cfd1901, https://usegalaxy.org.au/published/workflow?id=434127690544d0e9, https://usegalaxy.org.au/published/workflow?id=43a951ec514498f6, https://usegalaxy.org.au/published/workflow?id=446ba22c3d2f3367, https://usegalaxy.org.au/published/workflow?id=462beb964c99619d, https://usegalaxy.org.au/published/workflow?id=499245b3a113e06d, https://usegalaxy.org.au/published/workflow?id=4b681937a01df465, https://usegalaxy.org.au/published/workflow?id=4cb69c84b73ea9dd, https://usegalaxy.org.au/published/workflow?id=4e7930c7286c6e9e, https://usegalaxy.org.au/published/workflow?id=4ebf1297793870e7, https://usegalaxy.org.au/published/workflow?id=518d27f68e05a356, https://usegalaxy.org.au/published/workflow?id=51bad198f1fd1215, https://usegalaxy.org.au/published/workflow?id=543fb2d9431a7e13, https://usegalaxy.org.au/published/workflow?id=5490661d0153962b, https://usegalaxy.org.au/published/workflow?id=5550585ffc3d8d0e, https://usegalaxy.org.au/published/workflow?id=5a975438c8752269, https://usegalaxy.org.au/published/workflow?id=5b0c0e34394afed1, https://usegalaxy.org.au/published/workflow?id=5cd7f1824db7a960, https://usegalaxy.org.au/published/workflow?id=5cd804644a34c8fd, https://usegalaxy.org.au/published/workflow?id=5f4f874e49515555, https://usegalaxy.org.au/published/workflow?id=60c0dec52cdca708, https://usegalaxy.org.au/published/workflow?id=61a21c9928182ae4, https://usegalaxy.org.au/published/workflow?id=63789b6f82172679, https://usegalaxy.org.au/published/workflow?id=66e530368fd40abd, https://usegalaxy.org.au/published/workflow?id=6795e545b0cafded, https://usegalaxy.org.au/published/workflow?id=68b2961117e62890, https://usegalaxy.org.au/published/workflow?id=69d91340fc7effa2, https://usegalaxy.org.au/published/workflow?id=6ab36c0d5b0d73e0, https://usegalaxy.org.au/published/workflow?id=6c27019d03dd49d8, https://usegalaxy.org.au/published/workflow?id=6c9129acb9d98afe, https://usegalaxy.org.au/published/workflow?id=6dfbff6d74c0601b, https://usegalaxy.org.au/published/workflow?id=6f76c43e6d2d7f74, https://usegalaxy.org.au/published/workflow?id=7168c01be9997823, https://usegalaxy.org.au/published/workflow?id=71bad95f72c9f30d, https://usegalaxy.org.au/published/workflow?id=75113a1b41904d2a, https://usegalaxy.org.au/published/workflow?id=781457327e644c7e, https://usegalaxy.org.au/published/workflow?id=7909da83448d8bf4, https://usegalaxy.org.au/published/workflow?id=79bf7b0f5e9052d7, https://usegalaxy.org.au/published/workflow?id=7a0b3968968c5994, https://usegalaxy.org.au/published/workflow?id=7cc2b5010c56f117, https://usegalaxy.org.au/published/workflow?id=800d28ec61b15244, https://usegalaxy.org.au/published/workflow?id=81a5b96452c71a52, https://usegalaxy.org.au/published/workflow?id=82d0876385b5ac60, https://usegalaxy.org.au/published/workflow?id=851552cc3e830253, https://usegalaxy.org.au/published/workflow?id=8926e592f2e60863, https://usegalaxy.org.au/published/workflow?id=8a6233015db6dd24, https://usegalaxy.org.au/published/workflow?id=8bf8c9929249f37d, https://usegalaxy.org.au/published/workflow?id=8dd86497bc15d981, https://usegalaxy.org.au/published/workflow?id=8e2b94c6fbf44368, https://usegalaxy.org.au/published/workflow?id=8e8a5cce9f3f2f67, https://usegalaxy.org.au/published/workflow?id=9016b2be61f89053, https://usegalaxy.org.au/published/workflow?id=91ee716be8bfd508, https://usegalaxy.org.au/published/workflow?id=932bad88f8dc8d33, https://usegalaxy.org.au/published/workflow?id=9642aadb83c4f752, https://usegalaxy.org.au/published/workflow?id=970dc0d8bd74707f, https://usegalaxy.org.au/published/workflow?id=97cdd93e41aa46f9, https://usegalaxy.org.au/published/workflow?id=9804030358c3f844, https://usegalaxy.org.au/published/workflow?id=989eb73372135796, https://usegalaxy.org.au/published/workflow?id=98f660971010d11d, https://usegalaxy.org.au/published/workflow?id=9e0bae0505ee7c07, https://usegalaxy.org.au/published/workflow?id=9f112e39bd3bd746, https://usegalaxy.org.au/published/workflow?id=9f6e62f465589ca3, https://usegalaxy.org.au/published/workflow?id=a02c102e179596cb, https://usegalaxy.org.au/published/workflow?id=a1015b83baa0eb6d, https://usegalaxy.org.au/published/workflow?id=a209f43d8a3cc853, https://usegalaxy.org.au/published/workflow?id=a320948b3eb1a421, https://usegalaxy.org.au/published/workflow?id=a345bf84eb9bf6b2, https://usegalaxy.org.au/published/workflow?id=a40dadc943a0db1e, https://usegalaxy.org.au/published/workflow?id=a525966251895f8a, https://usegalaxy.org.au/published/workflow?id=a740543c4e9808f1, https://usegalaxy.org.au/published/workflow?id=a77ce877e786d44a, https://usegalaxy.org.au/published/workflow?id=ac8bdc5a0b2d70cd, https://usegalaxy.org.au/published/workflow?id=ad10cd704268dcf0, https://usegalaxy.org.au/published/workflow?id=b19fa49405117317, https://usegalaxy.org.au/published/workflow?id=b310af289ada88bc, https://usegalaxy.org.au/published/workflow?id=b5131e3a0ef2676e, https://usegalaxy.org.au/published/workflow?id=b601f48ecec15bf4, https://usegalaxy.org.au/published/workflow?id=b920b02a23f94d11, https://usegalaxy.org.au/published/workflow?id=b9e82e3fae56d8b4, https://usegalaxy.org.au/published/workflow?id=b9faf6a3f48fc11b, https://usegalaxy.org.au/published/workflow?id=ba7a9d4c857d26b7, https://usegalaxy.org.au/published/workflow?id=bc4e3115586cbe62, https://usegalaxy.org.au/published/workflow?id=be96bb47b6d6435a, https://usegalaxy.org.au/published/workflow?id=c556c2270200801d, https://usegalaxy.org.au/published/workflow?id=c622bd03677314aa, https://usegalaxy.org.au/published/workflow?id=c6a71573a299eb3a, https://usegalaxy.org.au/published/workflow?id=c7e1f666a3366823, https://usegalaxy.org.au/published/workflow?id=c7f2d6490128dc3c, https://usegalaxy.org.au/published/workflow?id=c853aa707fcddf4e, https://usegalaxy.org.au/published/workflow?id=cbf022e349d726d9, https://usegalaxy.org.au/published/workflow?id=cf775b8ff0745456, https://usegalaxy.org.au/published/workflow?id=d094d2aa9c6e9c24, https://usegalaxy.org.au/published/workflow?id=d0d6743450e5060d, https://usegalaxy.org.au/published/workflow?id=d298edda13b382e7, https://usegalaxy.org.au/published/workflow?id=d42d7b1aa47e870f, https://usegalaxy.org.au/published/workflow?id=d7f3fc810261e419, https://usegalaxy.org.au/published/workflow?id=d83d5ecf31c20490, https://usegalaxy.org.au/published/workflow?id=d9c181fd954b629a, https://usegalaxy.org.au/published/workflow?id=daff6854b5dfc6f1, https://usegalaxy.org.au/published/workflow?id=df4e186069552649, https://usegalaxy.org.au/published/workflow?id=e154a9b605ea0886, https://usegalaxy.org.au/published/workflow?id=e1fd89e7248b6661, https://usegalaxy.org.au/published/workflow?id=e28ca83f14f4ede5, https://usegalaxy.org.au/published/workflow?id=e6552643a3713b50, https://usegalaxy.org.au/published/workflow?id=ea687c5613fcce27, https://usegalaxy.org.au/published/workflow?id=ebd1ee73906fdea0, https://usegalaxy.org.au/published/workflow?id=ebf88e79c4f094ba, https://usegalaxy.org.au/published/workflow?id=ecfb8a08e5a40e15, https://usegalaxy.org.au/published/workflow?id=edc20b5e70297a7d, https://usegalaxy.org.au/published/workflow?id=f06370394b061e08, https://usegalaxy.org.au/published/workflow?id=f65b54fcffaa11e5, https://usegalaxy.org.au/published/workflow?id=f7a866159f1eaecf, https://usegalaxy.org.au/published/workflow?id=f895914e322c8b77, https://usegalaxy.org.au/published/workflow?id=fa37223950a91f34, https://usegalaxy.org.au/published/workflow?id=fbc732db2a2821b0, https://usegalaxy.org.au/published/workflow?id=fe1e7fa0bc437ed8, https://usegalaxy.org.au/published/workflow?id=fea0e6c02c2f6274, https://usegalaxy.org.au/published/workflow?id=fff2e49bc90e38ca, https://usegalaxy.org/published/workflow?id=00bc4e99626da1ba, https://usegalaxy.org/published/workflow?id=0115daec07bb1da6, https://usegalaxy.org/published/workflow?id=03744158aa2c4149, https://usegalaxy.org/published/workflow?id=0392de36b6f55a8f, https://usegalaxy.org/published/workflow?id=07739fbbd53755f6, https://usegalaxy.org/published/workflow?id=07e761b2501971c6, https://usegalaxy.org/published/workflow?id=07e873a6d75dfe9f, https://usegalaxy.org/published/workflow?id=08ca80ae36c8c576, https://usegalaxy.org/published/workflow?id=097b37da08ceca64, https://usegalaxy.org/published/workflow?id=0993daadf2db5f51, https://usegalaxy.org/published/workflow?id=0e3e3958f55c606e, https://usegalaxy.org/published/workflow?id=0ebb1f5b6c9c8ab9, https://usegalaxy.org/published/workflow?id=10d5e195501603bc, https://usegalaxy.org/published/workflow?id=1245e9435cbc3985, https://usegalaxy.org/published/workflow?id=1250ec3ad6199cda, https://usegalaxy.org/published/workflow?id=137d0f05a71d7acb, https://usegalaxy.org/published/workflow?id=13a1fa4f6daf65cc, https://usegalaxy.org/published/workflow?id=14f62361a15f8a24, https://usegalaxy.org/published/workflow?id=156e245e3d9f22ce, https://usegalaxy.org/published/workflow?id=15ea806eaf077617, https://usegalaxy.org/published/workflow?id=17f3d7e52777d2e8, https://usegalaxy.org/published/workflow?id=1b434bfc3aac0022, https://usegalaxy.org/published/workflow?id=1d24cc949c52e475, https://usegalaxy.org/published/workflow?id=1e1d7fac7e241768, https://usegalaxy.org/published/workflow?id=1e264fc06d87899f, https://usegalaxy.org/published/workflow?id=1eec2586d1ff908b, https://usegalaxy.org/published/workflow?id=1ffc71df8eeed57e, https://usegalaxy.org/published/workflow?id=2049d38325423cfe, https://usegalaxy.org/published/workflow?id=237ca9f36ca266e7, https://usegalaxy.org/published/workflow?id=242ef2e9dee35702, https://usegalaxy.org/published/workflow?id=25a9f0693ff6d327, https://usegalaxy.org/published/workflow?id=26d2c2d51d6a7158, https://usegalaxy.org/published/workflow?id=284150bb1f296378, https://usegalaxy.org/published/workflow?id=28e86ab943c67417, https://usegalaxy.org/published/workflow?id=2957924403998f3a, https://usegalaxy.org/published/workflow?id=2967ef82911f2cca, https://usegalaxy.org/published/workflow?id=2b09f3c9465ee054, https://usegalaxy.org/published/workflow?id=2b298d673d93309d, https://usegalaxy.org/published/workflow?id=2b5346b94358df88, https://usegalaxy.org/published/workflow?id=2c5c627c08563398, https://usegalaxy.org/published/workflow?id=2cc5472ad7c039d1, https://usegalaxy.org/published/workflow?id=2d64e09025ae8ed4, https://usegalaxy.org/published/workflow?id=2d994cc02ec05ede, https://usegalaxy.org/published/workflow?id=2dceaa255cc8cf83, https://usegalaxy.org/published/workflow?id=2f1469dab87a3649, https://usegalaxy.org/published/workflow?id=30507545aa971637, https://usegalaxy.org/published/workflow?id=305fb9f84b053713, https://usegalaxy.org/published/workflow?id=3179c157fa5a2fdd, https://usegalaxy.org/published/workflow?id=31cc891be77cbc6f, https://usegalaxy.org/published/workflow?id=31e73cdaa0fb70c3, https://usegalaxy.org/published/workflow?id=336795e890851c21, https://usegalaxy.org/published/workflow?id=347571ba3b281bf4, https://usegalaxy.org/published/workflow?id=3673a1ced343d0d0, https://usegalaxy.org/published/workflow?id=3753dcca4100e976, https://usegalaxy.org/published/workflow?id=3a172bd71ea15178, https://usegalaxy.org/published/workflow?id=3ba73f679558017c, https://usegalaxy.org/published/workflow?id=3db4eb1ecb588d44, https://usegalaxy.org/published/workflow?id=3edea70fbdb9dbd9, https://usegalaxy.org/published/workflow?id=3f7550d5d2bf0b96, https://usegalaxy.org/published/workflow?id=408c799822cbf6ea, https://usegalaxy.org/published/workflow?id=420a332da24fb9e9, https://usegalaxy.org/published/workflow?id=426358bd988cb39d, https://usegalaxy.org/published/workflow?id=4266aa248d5b1ea4, https://usegalaxy.org/published/workflow?id=4339d5625c15ae78, https://usegalaxy.org/published/workflow?id=4357180d40560019, https://usegalaxy.org/published/workflow?id=435f0340bf00c940, https://usegalaxy.org/published/workflow?id=44781c8b0bd667ed, https://usegalaxy.org/published/workflow?id=44bcae0e352563f9, https://usegalaxy.org/published/workflow?id=450c2181f89e6b23, https://usegalaxy.org/published/workflow?id=45c0b677c4920d03, https://usegalaxy.org/published/workflow?id=468c5a8fe7a40778, https://usegalaxy.org/published/workflow?id=46e718fb8eeb4d54, https://usegalaxy.org/published/workflow?id=472f73c3e81da1d9, https://usegalaxy.org/published/workflow?id=4769befb88f653d6, https://usegalaxy.org/published/workflow?id=478c263e8334bb31, https://usegalaxy.org/published/workflow?id=484f8fcf21d67376, https://usegalaxy.org/published/workflow?id=498a8c6329ca5728, https://usegalaxy.org/published/workflow?id=49c9e8161a46667f, https://usegalaxy.org/published/workflow?id=4bf38f5b45faa8a1, https://usegalaxy.org/published/workflow?id=4bf73376661baafd, https://usegalaxy.org/published/workflow?id=4faff660f6defa10, https://usegalaxy.org/published/workflow?id=4ffdb2cf21759d26, https://usegalaxy.org/published/workflow?id=5004f1087f5e87db, https://usegalaxy.org/published/workflow?id=506acac8c6a58d5e, https://usegalaxy.org/published/workflow?id=507c817755b2410d, https://usegalaxy.org/published/workflow?id=527adadecbab2eb6, https://usegalaxy.org/published/workflow?id=52bde903adbbaf60, https://usegalaxy.org/published/workflow?id=52e2b69787ca7a17, https://usegalaxy.org/published/workflow?id=553125cd799e5982, https://usegalaxy.org/published/workflow?id=55911cad792d4f59, https://usegalaxy.org/published/workflow?id=56530f4d41413832, https://usegalaxy.org/published/workflow?id=574e42683dc3961b, https://usegalaxy.org/published/workflow?id=578f46106f72c971, https://usegalaxy.org/published/workflow?id=57e6345fda3e2682, https://usegalaxy.org/published/workflow?id=5834e562fa403732, https://usegalaxy.org/published/workflow?id=59007e2bc9c807ee, https://usegalaxy.org/published/workflow?id=597c4d54f8a8ebe7, https://usegalaxy.org/published/workflow?id=5b72ffcea967494f, https://usegalaxy.org/published/workflow?id=5d1208bd49f97aeb, https://usegalaxy.org/published/workflow?id=5dfec2a3ae5fa765, https://usegalaxy.org/published/workflow?id=5edabfc62f58d8cf, https://usegalaxy.org/published/workflow?id=60b9910b7bb69f47, https://usegalaxy.org/published/workflow?id=653d553ac2fa51c8, https://usegalaxy.org/published/workflow?id=65ccf48b7872e36c, https://usegalaxy.org/published/workflow?id=65f3a5772ae05a7a, https://usegalaxy.org/published/workflow?id=66748e20a243eafe, https://usegalaxy.org/published/workflow?id=67080f040e855990, https://usegalaxy.org/published/workflow?id=683e725f672b7d9b, https://usegalaxy.org/published/workflow?id=6a174e7498434bd5, https://usegalaxy.org/published/workflow?id=6b511b47176893e3, https://usegalaxy.org/published/workflow?id=6ba03802169c0063, https://usegalaxy.org/published/workflow?id=6c2bb2209aad5e44, https://usegalaxy.org/published/workflow?id=6db96a9c7e4b8d14, https://usegalaxy.org/published/workflow?id=6e75ac640853d0dd, https://usegalaxy.org/published/workflow?id=6f836f4b71d399e7, https://usegalaxy.org/published/workflow?id=6fc7497c86ebd8ee, https://usegalaxy.org/published/workflow?id=7072731b51e16923, https://usegalaxy.org/published/workflow?id=73c20d784b7ef81a, https://usegalaxy.org/published/workflow?id=746f4eef47648b26, https://usegalaxy.org/published/workflow?id=75fffbce810acaf3, https://usegalaxy.org/published/workflow?id=768cee70d9aa8cc6, https://usegalaxy.org/published/workflow?id=771345c66d5b9700, https://usegalaxy.org/published/workflow?id=7adf904dea83e699, https://usegalaxy.org/published/workflow?id=7af656b8ea5e7e2e, https://usegalaxy.org/published/workflow?id=7b20a62d69d53efc, https://usegalaxy.org/published/workflow?id=7b9e17cb1d72d7e4, https://usegalaxy.org/published/workflow?id=7c4a2339b17a8930, https://usegalaxy.org/published/workflow?id=7ca9c5203520ca7e, https://usegalaxy.org/published/workflow?id=7da0b02000e3b9e8, https://usegalaxy.org/published/workflow?id=7dba74c915f63dc1, https://usegalaxy.org/published/workflow?id=7f6900852a81d121, https://usegalaxy.org/published/workflow?id=7fb4dae5daab0522, https://usegalaxy.org/published/workflow?id=8095deba606ebd5e, https://usegalaxy.org/published/workflow?id=80fa8f0fe6330b88, https://usegalaxy.org/published/workflow?id=81183f40d2f3e395, https://usegalaxy.org/published/workflow?id=81c0d753e90df858, https://usegalaxy.org/published/workflow?id=81f1f0fd6d9235fd, https://usegalaxy.org/published/workflow?id=85bc37a59a6ea443, https://usegalaxy.org/published/workflow?id=864da6858d34df08, https://usegalaxy.org/published/workflow?id=86c67855acbf6124, https://usegalaxy.org/published/workflow?id=885f0e66fa6b8790, https://usegalaxy.org/published/workflow?id=88e10493f7e6b9d5, https://usegalaxy.org/published/workflow?id=899db1fa0c09130a, https://usegalaxy.org/published/workflow?id=8a01c78688beae1d, https://usegalaxy.org/published/workflow?id=8a215695e7b57cf5, https://usegalaxy.org/published/workflow?id=8bf608c6fd0dabd0, https://usegalaxy.org/published/workflow?id=8ccb42012dcb5db2, https://usegalaxy.org/published/workflow?id=8cfbaa14cff5a633, https://usegalaxy.org/published/workflow?id=8d605fbd33003d26, https://usegalaxy.org/published/workflow?id=9057e2e000a7ef02, https://usegalaxy.org/published/workflow?id=90f5b512997c70f8, https://usegalaxy.org/published/workflow?id=916661b10327d8dc, https://usegalaxy.org/published/workflow?id=91806144e90637e8, https://usegalaxy.org/published/workflow?id=9255c0c9017b139f, https://usegalaxy.org/published/workflow?id=932b3bc10186f73e, https://usegalaxy.org/published/workflow?id=936ed7447c8e0a2d, https://usegalaxy.org/published/workflow?id=93c1fef4472aa7a8, https://usegalaxy.org/published/workflow?id=93cb976bd4ae546e, https://usegalaxy.org/published/workflow?id=950c7245a6c3f6e9, https://usegalaxy.org/published/workflow?id=953d9cbe05e632a8, https://usegalaxy.org/published/workflow?id=961dac8100c6c70c, https://usegalaxy.org/published/workflow?id=96ae2544e22d34c5, https://usegalaxy.org/published/workflow?id=96bd0007dceec123, https://usegalaxy.org/published/workflow?id=97c20a819394e381, https://usegalaxy.org/published/workflow?id=98a4b90f7fc2bfce, https://usegalaxy.org/published/workflow?id=9938a81fb6911412, https://usegalaxy.org/published/workflow?id=99ee567c092fb34c, https://usegalaxy.org/published/workflow?id=9ab68c65337b893b, https://usegalaxy.org/published/workflow?id=9cc814d43379c2a6, https://usegalaxy.org/published/workflow?id=9da91815a6588268, https://usegalaxy.org/published/workflow?id=9ddfdc9d6cacea88, https://usegalaxy.org/published/workflow?id=9e1762e46ddf9a85, https://usegalaxy.org/published/workflow?id=9e9a027e0c294a79, https://usegalaxy.org/published/workflow?id=9eb29b71d7effefc, https://usegalaxy.org/published/workflow?id=a0bffeb8cc263a5b, https://usegalaxy.org/published/workflow?id=a1333d6d9af28547, https://usegalaxy.org/published/workflow?id=a164d857439a126f, https://usegalaxy.org/published/workflow?id=a4a56efb37d845bf, https://usegalaxy.org/published/workflow?id=a666aaaa32f62487, https://usegalaxy.org/published/workflow?id=a8b9252fad5fe06a, https://usegalaxy.org/published/workflow?id=a8e0f77cd6ef49f9, https://usegalaxy.org/published/workflow?id=a99a938953be5fd6, https://usegalaxy.org/published/workflow?id=ab0be4897d5355ac, https://usegalaxy.org/published/workflow?id=acada5044d64a30a, https://usegalaxy.org/published/workflow?id=adb86df9061dca2b, https://usegalaxy.org/published/workflow?id=af5d714396856e9a, https://usegalaxy.org/published/workflow?id=b0f85c802c1ea7f8, https://usegalaxy.org/published/workflow?id=b12f99e2233fcca6, https://usegalaxy.org/published/workflow?id=b1b4fc510099d592, https://usegalaxy.org/published/workflow?id=b1dc9cf054a63be5, https://usegalaxy.org/published/workflow?id=b5e8f4a0ff226921, https://usegalaxy.org/published/workflow?id=b63d1e1024cc3295, https://usegalaxy.org/published/workflow?id=b661fb850c4b4b01, https://usegalaxy.org/published/workflow?id=b6d535f210efa18e, https://usegalaxy.org/published/workflow?id=b78a75ae89ae4c79, https://usegalaxy.org/published/workflow?id=b8fdf05ec7540510, https://usegalaxy.org/published/workflow?id=bb1cb6abfe84a646, https://usegalaxy.org/published/workflow?id=bb25ac3ba4863424, https://usegalaxy.org/published/workflow?id=bb9ee8e05f7042a9, https://usegalaxy.org/published/workflow?id=bbc894a79eb0e769, https://usegalaxy.org/published/workflow?id=bd6bfd338ffb9637, https://usegalaxy.org/published/workflow?id=bf79271a438ffa54, https://usegalaxy.org/published/workflow?id=bfd2e7e63d3e6856, https://usegalaxy.org/published/workflow?id=bfef75672b9c3ea4, https://usegalaxy.org/published/workflow?id=c09b8a0c96123cbb, https://usegalaxy.org/published/workflow?id=c0a9a2d53b8660de, https://usegalaxy.org/published/workflow?id=c17fa637bcdec86e, https://usegalaxy.org/published/workflow?id=c50f10ecd1ac2ff9, https://usegalaxy.org/published/workflow?id=c64719e91e7346a2, https://usegalaxy.org/published/workflow?id=c7aca0f5bb660907, https://usegalaxy.org/published/workflow?id=c7b2d2ccc4b0dec5, https://usegalaxy.org/published/workflow?id=c81833a367445f98, https://usegalaxy.org/published/workflow?id=c88708cd216dbc17, https://usegalaxy.org/published/workflow?id=c983ea8a32662cd6, https://usegalaxy.org/published/workflow?id=ca36eebd59575df3, https://usegalaxy.org/published/workflow?id=cb4ccd3068819418, https://usegalaxy.org/published/workflow?id=cb7c638fed3ed697, https://usegalaxy.org/published/workflow?id=cbbd7e95041d9429, https://usegalaxy.org/published/workflow?id=cc50da71cdf6f244, https://usegalaxy.org/published/workflow?id=cd1badac800122c2, https://usegalaxy.org/published/workflow?id=cd5f803c80875b9c, https://usegalaxy.org/published/workflow?id=cd824d8631d6a55e, https://usegalaxy.org/published/workflow?id=cf3320614654adfe, https://usegalaxy.org/published/workflow?id=cfd5dc3c7bc1e832, https://usegalaxy.org/published/workflow?id=d00ac64dcd07f91a, https://usegalaxy.org/published/workflow?id=d08135fa13d1745e, https://usegalaxy.org/published/workflow?id=d136d24e4c96962a, https://usegalaxy.org/published/workflow?id=d2e8a6b39fe88f4c, https://usegalaxy.org/published/workflow?id=d4b2b85db47c405e, https://usegalaxy.org/published/workflow?id=d6d49e6c823e7d54, https://usegalaxy.org/published/workflow?id=d77d0f5ca5cae2d1, https://usegalaxy.org/published/workflow?id=d903c7215a88c79f, https://usegalaxy.org/published/workflow?id=daaded719dcfd53b, https://usegalaxy.org/published/workflow?id=dbc650d226e89013, https://usegalaxy.org/published/workflow?id=dcbc71347300822d, https://usegalaxy.org/published/workflow?id=dcf658333596d76a, https://usegalaxy.org/published/workflow?id=de29cd965a2e93d3, https://usegalaxy.org/published/workflow?id=df24d76ebf13e3c1, https://usegalaxy.org/published/workflow?id=dff3cf6921b3d4d6, https://usegalaxy.org/published/workflow?id=e0da87cadb1e6d5f, https://usegalaxy.org/published/workflow?id=e0ec503626fa0d58, https://usegalaxy.org/published/workflow?id=e107d8036c064616, https://usegalaxy.org/published/workflow?id=e10859cc568da07c, https://usegalaxy.org/published/workflow?id=e12324f5e3b930fd, https://usegalaxy.org/published/workflow?id=e12e642b88a0fe08, https://usegalaxy.org/published/workflow?id=e3c1736cca484dda, https://usegalaxy.org/published/workflow?id=e4dd39237df58884, https://usegalaxy.org/published/workflow?id=e4f6b68301aafd38, https://usegalaxy.org/published/workflow?id=e50e36a25bae863c, https://usegalaxy.org/published/workflow?id=e58a87508a337b91, https://usegalaxy.org/published/workflow?id=e5c066644cc7cc07, https://usegalaxy.org/published/workflow?id=e6550f5289099efc, https://usegalaxy.org/published/workflow?id=e899acc664c8b808, https://usegalaxy.org/published/workflow?id=e8b1d1e5e889c986, https://usegalaxy.org/published/workflow?id=e9ffad95baa43478, https://usegalaxy.org/published/workflow?id=ea4c2defce2f5258, https://usegalaxy.org/published/workflow?id=eaf96fa3c39c210b, https://usegalaxy.org/published/workflow?id=eafe4aa62a600e1d, https://usegalaxy.org/published/workflow?id=ecb279a9114140ab, https://usegalaxy.org/published/workflow?id=ee3b8d7ba29da11c, https://usegalaxy.org/published/workflow?id=f0ee8bcd7c8fadca, https://usegalaxy.org/published/workflow?id=f18e6fa5270fcd37, https://usegalaxy.org/published/workflow?id=f1a54b10d4afce8f, https://usegalaxy.org/published/workflow?id=f1dd64a7464054a4, https://usegalaxy.org/published/workflow?id=f365c53b5024d7f1, https://usegalaxy.org/published/workflow?id=f58c90061c31bd48, https://usegalaxy.org/published/workflow?id=f6ee07c7edf170fb, https://usegalaxy.org/published/workflow?id=f7d1c6be4e4c3357, https://usegalaxy.org/published/workflow?id=f93a4f6b5f3aaaed, https://usegalaxy.org/published/workflow?id=fa26fd51caea53c7, https://usegalaxy.org/published/workflow?id=fbf75fbb72b488bd, https://usegalaxy.org/published/workflow?id=fc7b14aafa0b421e, https://usegalaxy.org/published/workflow?id=fcbe12fc4eaae12e, https://usegalaxy.org/published/workflow?id=fd155fcba9bed7ff, https://usegalaxy.org/published/workflow?id=fd40e50c9f1545ce, https://usegalaxy.org/published/workflow?id=fdfe38dc92e51611, https://usegalaxy.org/published/workflow?id=ff3ade25b35f4893, https://workflowhub.eu/workflows/1057?version=8, https://workflowhub.eu/workflows/1061?version=1, https://workflowhub.eu/workflows/109?version=9, https://workflowhub.eu/workflows/111?version=5, https://workflowhub.eu/workflows/1327?version=6, https://workflowhub.eu/workflows/138?version=9, https://workflowhub.eu/workflows/1395?version=2, https://workflowhub.eu/workflows/1448?version=1, https://workflowhub.eu/workflows/1469?version=1, https://workflowhub.eu/workflows/1486?version=1, https://workflowhub.eu/workflows/1492?version=2, https://workflowhub.eu/workflows/1518?version=1, https://workflowhub.eu/workflows/1530?version=1, https://workflowhub.eu/workflows/1567?version=1, https://workflowhub.eu/workflows/1571?version=1, https://workflowhub.eu/workflows/1601?version=1, https://workflowhub.eu/workflows/1607?version=1, https://workflowhub.eu/workflows/1623?version=1, https://workflowhub.eu/workflows/1632?version=1, https://workflowhub.eu/workflows/1684?version=1, https://workflowhub.eu/workflows/1688?version=1, https://workflowhub.eu/workflows/1699?version=1, https://workflowhub.eu/workflows/1708?version=1, https://workflowhub.eu/workflows/1713?version=1, https://workflowhub.eu/workflows/354?version=1, https://workflowhub.eu/workflows/356?version=1, https://workflowhub.eu/workflows/403?version=9, https://workflowhub.eu/workflows/603?version=2, https://workflowhub.eu/workflows/607?version=1, https://workflowhub.eu/workflows/612?version=23, https://workflowhub.eu/workflows/629?version=1, https://workflowhub.eu/workflows/633?version=21, https://workflowhub.eu/workflows/641?version=25, https://workflowhub.eu/workflows/642?version=23, https://workflowhub.eu/workflows/689?version=1, https://workflowhub.eu/workflows/698?version=1, https://workflowhub.eu/workflows/751?version=16, https://workflowhub.eu/workflows/789?version=1, https://workflowhub.eu/workflows/794?version=2 |
assembly/vgp_genome_assembly, data-science/data-manipulation-olympics, digital-humanities/text_mining_chinese, genome-annotation/gene-centric, genome-annotation/tnseq, introduction/data-manipulation-olympics, introduction/galaxy-intro-peaks2genes, microbiome/dada-16S, microbiome/metaplasmidome_query, microbiome/pathogen-detection-from-nanopore-foodborne-data, proteomics/maxquant-label-free, single-cell/bulk-deconvolution-evaluate, transcriptomics/differential-isoform-expression, transcriptomics/minerva-pathways, transcriptomics/ref-based, transcriptomics/rna-seq-analysis-clustering-viz, transcriptomics/rna-seq-genes-to-pathways, variant-analysis/pox-tiled-amplicon |
|
column_order_header_sort |
column_order_header_sort |
Sort Column Order by heading |
2017-04-04 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/column_order_header_sort |
0.0.1 |
python |
|
To update |
Text Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/column_order_header_sort |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/column_order_header_sort |
|
|
|
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
270 |
311 |
4403 |
4606 |
400 |
400 |
1969 |
1970 |
0 |
0 |
0 |
0 |
13 |
13 |
20 |
20 |
6596 |
6392 |
724 |
683 |
https://usegalaxy.eu/published/workflow?id=1d2e17a4f71f2455, https://usegalaxy.eu/published/workflow?id=2f37c35ade97aa8d, https://usegalaxy.eu/published/workflow?id=67e20e3082d24fbd, https://usegalaxy.eu/published/workflow?id=6fc2b9bea5b75a49, https://usegalaxy.eu/published/workflow?id=dd8b55e7768843b1, https://usegalaxy.eu/published/workflow?id=f28459c5b16549b7, https://usegalaxy.eu/published/workflow?id=fe64d430d50faf0b, https://usegalaxy.org/published/workflow?id=173ecc0c88090d0e, https://usegalaxy.org/published/workflow?id=6d0a3f36d2736087, https://usegalaxy.org/published/workflow?id=734e08331f8f34b7, https://usegalaxy.org/published/workflow?id=93650de42fb8c015, https://usegalaxy.org/published/workflow?id=a89def2c2462674a, https://usegalaxy.org/published/workflow?id=aac2ae0419f7d515, https://usegalaxy.org/published/workflow?id=b094b6e1e7d48416, https://usegalaxy.org/published/workflow?id=ddb737f2ad0589e8 |
|
|
column_remove_by_header |
column_remove_by_header |
Remove columns by header |
2017-04-04 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/column_remove_by_header |
1.0 |
python |
|
To update |
Text Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/column_remove_by_header |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/column_remove_by_header |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
745 |
809 |
9250 |
9882 |
784 |
791 |
5535 |
5546 |
29 |
29 |
2020 |
2020 |
37 |
37 |
179 |
179 |
17627 |
16984 |
1666 |
1595 |
https://dev.workflowhub.eu/workflows/1230?version=1, https://dev.workflowhub.eu/workflows/1395?version=1, https://usegalaxy.eu/published/workflow?id=04df470a38b10e94, https://usegalaxy.eu/published/workflow?id=1b72af1870c540d6, https://usegalaxy.eu/published/workflow?id=2ae4a83327615155, https://usegalaxy.eu/published/workflow?id=409ac72c9906f16a, https://usegalaxy.eu/published/workflow?id=9791e8aae12d6e63, https://usegalaxy.eu/published/workflow?id=c3a11e1ac1aa8383, https://usegalaxy.eu/published/workflow?id=c7b9fb6872444809, https://usegalaxy.eu/published/workflow?id=d1b3b62e7f91e217, https://usegalaxy.eu/published/workflow?id=e04be1ab5a16eb9f, https://usegalaxy.org.au/published/workflow?id=5fe66b29dcfb22ab, https://usegalaxy.org/published/workflow?id=13a3954b8894e1b1, https://usegalaxy.org/published/workflow?id=347571ba3b281bf4, https://usegalaxy.org/published/workflow?id=3cb4fd9ff755d36e, https://workflowhub.eu/workflows/1207?version=2, https://workflowhub.eu/workflows/1542?version=1, https://workflowhub.eu/workflows/1556?version=1, https://workflowhub.eu/workflows/888?version=2 |
ecology/ecoregiolifetraits, single-cell/bulk-music-3-preparebulk, single-cell/pseudobulk-analysis |
|
comebin |
comebin |
Binning of metagenomic contigs using COntrastive Multi-viEw representation learning |
2025-07-03 |
https://github.com/ziyewang/COMEBin |
1.0.4 |
comebin |
1.0.4 |
Up-to-date |
Metagenomics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/comebin/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/comebin |
|
|
|
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
compleasm |
compleasm |
Compleasm: a faster and more accurate reimplementation of BUSCO |
2023-12-04 |
https://github.com/huangnengCSU/compleasm |
0.2.6 |
compleasm |
0.2.7 |
To update |
Sequence Analysis |
Sequence assembly validation |
Sequence assembly validation |
Sequence assembly, Genomics, Transcriptomics, Sequence analysis |
Sequence assembly, Transcriptomics, Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/compleasm/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/compleasm |
compleasm |
Compleasm |
Compleasm: a faster and more accurate reimplementation of BUSCO.It provides measures for quantitative assessment of genome assembly, gene set, and transcriptome completeness based on evolutionarily informed expectations of gene content from near-universal single-copy orthologs. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
59 |
59 |
475 |
475 |
52 |
52 |
104 |
104 |
8 |
8 |
54 |
54 |
12 |
12 |
362 |
362 |
995 |
995 |
131 |
131 |
https://usegalaxy.eu/published/workflow?id=194a05d42687b524, https://usegalaxy.eu/published/workflow?id=1d1ae39386b5c318, https://usegalaxy.eu/published/workflow?id=1da7ac8eaf891f39, https://usegalaxy.eu/published/workflow?id=1e7f4ba6261f979c, https://usegalaxy.eu/published/workflow?id=327beb1edda305ff, https://usegalaxy.eu/published/workflow?id=3d604dad4f1f5b3d, https://usegalaxy.eu/published/workflow?id=3e255a5b7026d26e, https://usegalaxy.eu/published/workflow?id=4077e77b6af919c4, https://usegalaxy.eu/published/workflow?id=475ea16f943cc013, https://usegalaxy.eu/published/workflow?id=54590ccd11ffbf65, https://usegalaxy.eu/published/workflow?id=6573f3b1606b7f09, https://usegalaxy.eu/published/workflow?id=6865f33cffca4922, https://usegalaxy.eu/published/workflow?id=7337d15d121596da, https://usegalaxy.eu/published/workflow?id=7e68cf8a67efa8e9, https://usegalaxy.eu/published/workflow?id=9d209bcdae1a475e, https://usegalaxy.eu/published/workflow?id=ae74f60cd20d56bc, https://usegalaxy.eu/published/workflow?id=c4c2e669b86cffbc, https://usegalaxy.eu/published/workflow?id=d17d6029914d666b, https://usegalaxy.eu/published/workflow?id=d649ec485c4b3994, https://usegalaxy.eu/published/workflow?id=f08b29e4cef76cd5, https://usegalaxy.eu/published/workflow?id=f63127675a07e00a, https://usegalaxy.eu/published/workflow?id=fd649ac4d4872c81, https://usegalaxy.fr/published/workflow?id=ae05ff8487f58fd6, https://usegalaxy.org.au/published/workflow?id=2356584eac7fa234, https://usegalaxy.org.au/published/workflow?id=2470cb61ba51288c, https://usegalaxy.org.au/published/workflow?id=328adfa7d90b1d54, https://usegalaxy.org.au/published/workflow?id=40666ceb68d101ac, https://usegalaxy.org.au/published/workflow?id=41282d51f9112552, https://usegalaxy.org.au/published/workflow?id=466809eb3392f7fb, https://usegalaxy.org.au/published/workflow?id=4cb69c84b73ea9dd, https://usegalaxy.org.au/published/workflow?id=51bad198f1fd1215, https://usegalaxy.org.au/published/workflow?id=5550585ffc3d8d0e, https://usegalaxy.org.au/published/workflow?id=5b0c0e34394afed1, https://usegalaxy.org.au/published/workflow?id=6f76c43e6d2d7f74, https://usegalaxy.org.au/published/workflow?id=970dc0d8bd74707f, https://usegalaxy.org.au/published/workflow?id=98f660971010d11d, https://usegalaxy.org.au/published/workflow?id=ae2a397837b232b1, https://usegalaxy.org.au/published/workflow?id=be96bb47b6d6435a, https://usegalaxy.org.au/published/workflow?id=c7e1f666a3366823, https://usegalaxy.org.au/published/workflow?id=cbf022e349d726d9, https://usegalaxy.org.au/published/workflow?id=df4e186069552649, https://usegalaxy.org.au/published/workflow?id=f53d8ade897b3f46, https://usegalaxy.org/published/workflow?id=1b434bfc3aac0022, https://usegalaxy.org/published/workflow?id=2f1469dab87a3649, https://usegalaxy.org/published/workflow?id=3ba73f679558017c, https://usegalaxy.org/published/workflow?id=435f0340bf00c940, https://usegalaxy.org/published/workflow?id=49a07807fcea8158, https://usegalaxy.org/published/workflow?id=4bf38f5b45faa8a1, https://usegalaxy.org/published/workflow?id=597c4d54f8a8ebe7, https://usegalaxy.org/published/workflow?id=81f1f0fd6d9235fd, https://usegalaxy.org/published/workflow?id=90f5b512997c70f8, https://usegalaxy.org/published/workflow?id=91a4daecbb97d03e, https://usegalaxy.org/published/workflow?id=936ed7447c8e0a2d, https://usegalaxy.org/published/workflow?id=950c7245a6c3f6e9, https://usegalaxy.org/published/workflow?id=b6d535f210efa18e, https://usegalaxy.org/published/workflow?id=bbc894a79eb0e769, https://usegalaxy.org/published/workflow?id=bfd2e7e63d3e6856, https://usegalaxy.org/published/workflow?id=d08135fa13d1745e, https://usegalaxy.org/published/workflow?id=d4b2b85db47c405e, https://usegalaxy.org/published/workflow?id=e12e642b88a0fe08, https://usegalaxy.org/published/workflow?id=fb98ef955b3dbd4b, https://workflowhub.eu/workflows/612?version=23, https://workflowhub.eu/workflows/625?version=23, https://workflowhub.eu/workflows/633?version=21, https://workflowhub.eu/workflows/642?version=23, https://workflowhub.eu/workflows/751?version=16 |
|
|
compose_text_param |
compose_text_param |
Compose a text parameter value using text, integer and float values |
2019-05-09 |
|
0.1.1 |
|
|
To update |
Text Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/compose_text_param |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/compose_text_param |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
780 |
785 |
47568 |
47580 |
394 |
394 |
9569 |
9569 |
125 |
125 |
1557 |
1557 |
11 |
11 |
2191 |
2191 |
60897 |
60885 |
1315 |
1310 |
https://dev.workflowhub.eu/workflows/1078?version=1, https://dev.workflowhub.eu/workflows/1091?version=1, https://dev.workflowhub.eu/workflows/1293?version=1, https://dev.workflowhub.eu/workflows/1440?version=1, https://dev.workflowhub.eu/workflows/1441?version=1, https://dev.workflowhub.eu/workflows/194?version=2, https://dev.workflowhub.eu/workflows/199?version=2, https://dev.workflowhub.eu/workflows/548?version=1, https://usegalaxy.eu/published/workflow?id=020f877513f2d0d1, https://usegalaxy.eu/published/workflow?id=036990ecf300a99f, https://usegalaxy.eu/published/workflow?id=05bd1d9c61df5d16, https://usegalaxy.eu/published/workflow?id=06544e74f583fd05, https://usegalaxy.eu/published/workflow?id=079e2a968d8e6176, https://usegalaxy.eu/published/workflow?id=07e1478df88a17cc, https://usegalaxy.eu/published/workflow?id=098f43ded1b5fa7f, https://usegalaxy.eu/published/workflow?id=0a3ebee985c26060, https://usegalaxy.eu/published/workflow?id=0ae360bfbb3b2494, https://usegalaxy.eu/published/workflow?id=0bc971d84327da50, https://usegalaxy.eu/published/workflow?id=0c94260298199d8b, https://usegalaxy.eu/published/workflow?id=0cf3c2114ab65858, https://usegalaxy.eu/published/workflow?id=0eb137cd936bbfe0, https://usegalaxy.eu/published/workflow?id=0f207a15b6f7fa10, https://usegalaxy.eu/published/workflow?id=117177b0c231dc55, https://usegalaxy.eu/published/workflow?id=133b299125ff9905, https://usegalaxy.eu/published/workflow?id=16418e8b023ff226, https://usegalaxy.eu/published/workflow?id=17d2e76147fc940c, https://usegalaxy.eu/published/workflow?id=18af9bbae833f8fe, https://usegalaxy.eu/published/workflow?id=194a05d42687b524, https://usegalaxy.eu/published/workflow?id=19bb27eea9bcdb6f, https://usegalaxy.eu/published/workflow?id=1af73dc855d0a5ed, https://usegalaxy.eu/published/workflow?id=1b10ece62e745125, https://usegalaxy.eu/published/workflow?id=1c267e93aa8015e6, https://usegalaxy.eu/published/workflow?id=1d1ae39386b5c318, https://usegalaxy.eu/published/workflow?id=1da7ac8eaf891f39, https://usegalaxy.eu/published/workflow?id=1e7f4ba6261f979c, https://usegalaxy.eu/published/workflow?id=20592f292c205954, https://usegalaxy.eu/published/workflow?id=21a3f72851f29925, https://usegalaxy.eu/published/workflow?id=220961d803697f54, https://usegalaxy.eu/published/workflow?id=249c5d6698c8b98c, https://usegalaxy.eu/published/workflow?id=27fca972f1d1a312, https://usegalaxy.eu/published/workflow?id=2b888e200dfd91bc, https://usegalaxy.eu/published/workflow?id=2c3d05023c02113e, https://usegalaxy.eu/published/workflow?id=2d08a73dd8ff99e9, https://usegalaxy.eu/published/workflow?id=2d509fad86eb97fb, https://usegalaxy.eu/published/workflow?id=2f094f5e1f391529, https://usegalaxy.eu/published/workflow?id=31c6dcd3a25620df, https://usegalaxy.eu/published/workflow?id=3358c516f5412e92, https://usegalaxy.eu/published/workflow?id=373d861ef4b0081a, https://usegalaxy.eu/published/workflow?id=37b04b02ec08e84f, https://usegalaxy.eu/published/workflow?id=389d992ff7268247, https://usegalaxy.eu/published/workflow?id=3aaea772745ca295, https://usegalaxy.eu/published/workflow?id=3b57fc81001667b5, https://usegalaxy.eu/published/workflow?id=3c6ff60d1d3ceb3d, https://usegalaxy.eu/published/workflow?id=3e255a5b7026d26e, https://usegalaxy.eu/published/workflow?id=406e6ef0dfb38628, https://usegalaxy.eu/published/workflow?id=409336bf210033a2, https://usegalaxy.eu/published/workflow?id=43098b8afe78b071, https://usegalaxy.eu/published/workflow?id=4464d3b0fc782a1a, https://usegalaxy.eu/published/workflow?id=44c92c04f1d14631, https://usegalaxy.eu/published/workflow?id=466bdd8ba7b67264, https://usegalaxy.eu/published/workflow?id=475ea16f943cc013, https://usegalaxy.eu/published/workflow?id=4b4bfc79205d83f1, https://usegalaxy.eu/published/workflow?id=522500fac247be6f, https://usegalaxy.eu/published/workflow?id=52bdf400f97c5770, https://usegalaxy.eu/published/workflow?id=5395e76fa828c343, https://usegalaxy.eu/published/workflow?id=53de0e742573e588, https://usegalaxy.eu/published/workflow?id=54590ccd11ffbf65, https://usegalaxy.eu/published/workflow?id=579dd1e95e76402f, https://usegalaxy.eu/published/workflow?id=57b96a59cca0e8df, https://usegalaxy.eu/published/workflow?id=585c21b7b1d864fc, https://usegalaxy.eu/published/workflow?id=5cc732a6b4338bf5, https://usegalaxy.eu/published/workflow?id=5ded4002e684a02c, https://usegalaxy.eu/published/workflow?id=5ed38d8114bcd6f7, https://usegalaxy.eu/published/workflow?id=6573f3b1606b7f09, https://usegalaxy.eu/published/workflow?id=6865f33cffca4922, https://usegalaxy.eu/published/workflow?id=69cdd404592535ec, https://usegalaxy.eu/published/workflow?id=6aaf2b342d57f78d, https://usegalaxy.eu/published/workflow?id=6c91fe92ef069d64, https://usegalaxy.eu/published/workflow?id=6e1fe7372e93fae0, https://usegalaxy.eu/published/workflow?id=6ebd09100fc98878, https://usegalaxy.eu/published/workflow?id=6ed1016dfdf9f928, https://usegalaxy.eu/published/workflow?id=70ec8b1719e25982, https://usegalaxy.eu/published/workflow?id=71a6d128a09210f0, https://usegalaxy.eu/published/workflow?id=7337d15d121596da, https://usegalaxy.eu/published/workflow?id=77e5bbd317750915, https://usegalaxy.eu/published/workflow?id=7b4a9aebb09b51ca, https://usegalaxy.eu/published/workflow?id=7b7d6a5c6c65d74b, https://usegalaxy.eu/published/workflow?id=7bda7ae31c427347, https://usegalaxy.eu/published/workflow?id=7cbda24fd0767899, https://usegalaxy.eu/published/workflow?id=7d49f41cd294e15b, https://usegalaxy.eu/published/workflow?id=7e383fe34031a9d0, https://usegalaxy.eu/published/workflow?id=7e68cf8a67efa8e9, https://usegalaxy.eu/published/workflow?id=7ea91d562a02eb2f, https://usegalaxy.eu/published/workflow?id=81f1927bfe3ffea1, https://usegalaxy.eu/published/workflow?id=82879b0eb4a71ad0, https://usegalaxy.eu/published/workflow?id=83c5bf0208f4d217, https://usegalaxy.eu/published/workflow?id=83fea2e4508bc3ed, https://usegalaxy.eu/published/workflow?id=841367f185aaade4, https://usegalaxy.eu/published/workflow?id=84236d781f7dd2ad, https://usegalaxy.eu/published/workflow?id=843c10c447496280, https://usegalaxy.eu/published/workflow?id=86e2e2faa2e0bd46, https://usegalaxy.eu/published/workflow?id=873e6ac4699ed7f6, https://usegalaxy.eu/published/workflow?id=87fea062a9646a31, https://usegalaxy.eu/published/workflow?id=88f5cef7e4146520, https://usegalaxy.eu/published/workflow?id=8c6371b360217f72, https://usegalaxy.eu/published/workflow?id=8d00a8b70b0c019c, https://usegalaxy.eu/published/workflow?id=8f105de48f7f1d9d, https://usegalaxy.eu/published/workflow?id=930a9757252d3ca6, https://usegalaxy.eu/published/workflow?id=95c4d5549e820d88, https://usegalaxy.eu/published/workflow?id=96c61a584cb2e5e9, https://usegalaxy.eu/published/workflow?id=9aa290ce1927d700, https://usegalaxy.eu/published/workflow?id=9c5a0596956064a6, https://usegalaxy.eu/published/workflow?id=9d209bcdae1a475e, https://usegalaxy.eu/published/workflow?id=9da26c5131603b9f, https://usegalaxy.eu/published/workflow?id=9eb29cc96d8d75c2, https://usegalaxy.eu/published/workflow?id=9f8a93cfffb31cd6, https://usegalaxy.eu/published/workflow?id=9fc8b89954c04ee1, https://usegalaxy.eu/published/workflow?id=a2daeb488bee0152, https://usegalaxy.eu/published/workflow?id=a31100610fba17a1, https://usegalaxy.eu/published/workflow?id=a3da32b6b45da639, https://usegalaxy.eu/published/workflow?id=a639ea0419de1078, https://usegalaxy.eu/published/workflow?id=a9469155eee12ff1, https://usegalaxy.eu/published/workflow?id=aa5b077da1d36b23, https://usegalaxy.eu/published/workflow?id=abd1cb3457338eb5, https://usegalaxy.eu/published/workflow?id=ada52ba09b462567, https://usegalaxy.eu/published/workflow?id=ae74f60cd20d56bc, https://usegalaxy.eu/published/workflow?id=af30010868c97316, https://usegalaxy.eu/published/workflow?id=aff44f1665a14e23, https://usegalaxy.eu/published/workflow?id=b0377f05f97b18b1, https://usegalaxy.eu/published/workflow?id=b426e137396acb14, https://usegalaxy.eu/published/workflow?id=b57c3522bdd7c2d5, https://usegalaxy.eu/published/workflow?id=b6457cb04bf31613, https://usegalaxy.eu/published/workflow?id=b77e3b08092fa73e, https://usegalaxy.eu/published/workflow?id=b8fc492025ad6ff0, https://usegalaxy.eu/published/workflow?id=bace9aebab9d4ce3, https://usegalaxy.eu/published/workflow?id=c4c2e669b86cffbc, https://usegalaxy.eu/published/workflow?id=c4fa05e209a2f082, https://usegalaxy.eu/published/workflow?id=c832ecfa83bcda14, https://usegalaxy.eu/published/workflow?id=c98a14fcf5998159, https://usegalaxy.eu/published/workflow?id=c9f83ce86d407902, https://usegalaxy.eu/published/workflow?id=cab2aa791a814d55, https://usegalaxy.eu/published/workflow?id=cbe9e09ed3e91e2e, https://usegalaxy.eu/published/workflow?id=cc385bd4376a907c, https://usegalaxy.eu/published/workflow?id=cda516957bcfcd9c, https://usegalaxy.eu/published/workflow?id=ce1712139b4a4273, https://usegalaxy.eu/published/workflow?id=ce5c9287a67e6085, https://usegalaxy.eu/published/workflow?id=d1357759d0962144, https://usegalaxy.eu/published/workflow?id=d172f927a489e9f8, https://usegalaxy.eu/published/workflow?id=d17d6029914d666b, https://usegalaxy.eu/published/workflow?id=d1bd5d8597c1d31d, https://usegalaxy.eu/published/workflow?id=d3494c6124f820b2, https://usegalaxy.eu/published/workflow?id=d3edc3f0659a5e5b, https://usegalaxy.eu/published/workflow?id=d52ff93f4ffdd981, https://usegalaxy.eu/published/workflow?id=d649ec485c4b3994, https://usegalaxy.eu/published/workflow?id=d6809603f46de1b3, https://usegalaxy.eu/published/workflow?id=deec04097a871646, https://usegalaxy.eu/published/workflow?id=e3b0b521ee8f2aef, https://usegalaxy.eu/published/workflow?id=e4dabaf57668dbd1, https://usegalaxy.eu/published/workflow?id=e71ae1076d5f0584, https://usegalaxy.eu/published/workflow?id=e795e7f59b4de5e6, https://usegalaxy.eu/published/workflow?id=e8a8c0b59ba9d593, https://usegalaxy.eu/published/workflow?id=ea3b120f105434ec, https://usegalaxy.eu/published/workflow?id=ead0f264798f9418, https://usegalaxy.eu/published/workflow?id=eb03839cc36048f5, https://usegalaxy.eu/published/workflow?id=ee6dc47660540ba6, https://usegalaxy.eu/published/workflow?id=ef1d11b79a2e1727, https://usegalaxy.eu/published/workflow?id=f08b29e4cef76cd5, https://usegalaxy.eu/published/workflow?id=f394d1b12779ba41, https://usegalaxy.eu/published/workflow?id=f3e17c8dd80def27, https://usegalaxy.eu/published/workflow?id=f58526da1fd68108, https://usegalaxy.eu/published/workflow?id=f63127675a07e00a, https://usegalaxy.eu/published/workflow?id=f9b705e53b6d6539, https://usegalaxy.eu/published/workflow?id=fa53b172def3fe75, https://usegalaxy.eu/published/workflow?id=fcf745185d6e0ea4, https://usegalaxy.eu/published/workflow?id=fd649ac4d4872c81, https://usegalaxy.fr/published/workflow?id=0df61a88d64de252, https://usegalaxy.fr/published/workflow?id=798c8ff19825ab2c, https://usegalaxy.fr/published/workflow?id=a3e9062133fdf7c2, https://usegalaxy.fr/published/workflow?id=b168a179d1b456cb, https://usegalaxy.fr/published/workflow?id=bf8ffe72b7ce4570, https://usegalaxy.fr/published/workflow?id=d0d12c0b80c286f9, https://usegalaxy.org.au/published/workflow?id=000c2f1884bc4687, https://usegalaxy.org.au/published/workflow?id=04ab43fb3e7840ef, https://usegalaxy.org.au/published/workflow?id=04c9266c6a863fab, https://usegalaxy.org.au/published/workflow?id=0810be3d7d2b0322, https://usegalaxy.org.au/published/workflow?id=084bb76cf47d7060, https://usegalaxy.org.au/published/workflow?id=1764bb1f506212e8, https://usegalaxy.org.au/published/workflow?id=1782d699b0166725, https://usegalaxy.org.au/published/workflow?id=2356584eac7fa234, https://usegalaxy.org.au/published/workflow?id=2470cb61ba51288c, https://usegalaxy.org.au/published/workflow?id=28705b86e0595ded, https://usegalaxy.org.au/published/workflow?id=2955ea7be1cdda29, https://usegalaxy.org.au/published/workflow?id=2b2ce7e1206d177d, https://usegalaxy.org.au/published/workflow?id=2b71eb1dc2aa28a1, https://usegalaxy.org.au/published/workflow?id=2f49a0a03d99c57a, https://usegalaxy.org.au/published/workflow?id=2fee25e188531691, https://usegalaxy.org.au/published/workflow?id=328adfa7d90b1d54, https://usegalaxy.org.au/published/workflow?id=3b6e9f03b088bf01, https://usegalaxy.org.au/published/workflow?id=40666ceb68d101ac, https://usegalaxy.org.au/published/workflow?id=41282d51f9112552, https://usegalaxy.org.au/published/workflow?id=446ba22c3d2f3367, https://usegalaxy.org.au/published/workflow?id=466809eb3392f7fb, https://usegalaxy.org.au/published/workflow?id=499245b3a113e06d, https://usegalaxy.org.au/published/workflow?id=4b681937a01df465, https://usegalaxy.org.au/published/workflow?id=4cb69c84b73ea9dd, https://usegalaxy.org.au/published/workflow?id=4ea1049371de111c, https://usegalaxy.org.au/published/workflow?id=518d27f68e05a356, https://usegalaxy.org.au/published/workflow?id=51bad198f1fd1215, https://usegalaxy.org.au/published/workflow?id=5550585ffc3d8d0e, https://usegalaxy.org.au/published/workflow?id=56bda8e4b0018e03, https://usegalaxy.org.au/published/workflow?id=5a975438c8752269, https://usegalaxy.org.au/published/workflow?id=5b0c0e34394afed1, https://usegalaxy.org.au/published/workflow?id=5cd7f1824db7a960, https://usegalaxy.org.au/published/workflow?id=5cd9b9338e75f254, https://usegalaxy.org.au/published/workflow?id=61a21c9928182ae4, https://usegalaxy.org.au/published/workflow?id=66e530368fd40abd, https://usegalaxy.org.au/published/workflow?id=6795e545b0cafded, https://usegalaxy.org.au/published/workflow?id=68b2961117e62890, https://usegalaxy.org.au/published/workflow?id=6b1b0a945d367b4c, https://usegalaxy.org.au/published/workflow?id=6c1c11a81a2ab1b8, https://usegalaxy.org.au/published/workflow?id=6de8899c40a90b98, https://usegalaxy.org.au/published/workflow?id=6ec5728eec9c26d7, https://usegalaxy.org.au/published/workflow?id=6f76c43e6d2d7f74, https://usegalaxy.org.au/published/workflow?id=749d8f2d26e0a111, https://usegalaxy.org.au/published/workflow?id=7a0b3968968c5994, https://usegalaxy.org.au/published/workflow?id=7c22d726e1716f4b, https://usegalaxy.org.au/published/workflow?id=7cc2b5010c56f117, https://usegalaxy.org.au/published/workflow?id=800d28ec61b15244, https://usegalaxy.org.au/published/workflow?id=81a5b96452c71a52, https://usegalaxy.org.au/published/workflow?id=82d0876385b5ac60, https://usegalaxy.org.au/published/workflow?id=851552cc3e830253, https://usegalaxy.org.au/published/workflow?id=868775ef66d174a5, https://usegalaxy.org.au/published/workflow?id=888eb87b62c4e6dd, https://usegalaxy.org.au/published/workflow?id=8a6233015db6dd24, https://usegalaxy.org.au/published/workflow?id=8d6d4f848067f3d9, https://usegalaxy.org.au/published/workflow?id=8e2b94c6fbf44368, https://usegalaxy.org.au/published/workflow?id=8eab5e2b2c683076, https://usegalaxy.org.au/published/workflow?id=9016b2be61f89053, https://usegalaxy.org.au/published/workflow?id=970dc0d8bd74707f, https://usegalaxy.org.au/published/workflow?id=989eb73372135796, https://usegalaxy.org.au/published/workflow?id=98f660971010d11d, https://usegalaxy.org.au/published/workflow?id=9b18123afbe1264b, https://usegalaxy.org.au/published/workflow?id=a40dadc943a0db1e, https://usegalaxy.org.au/published/workflow?id=a740543c4e9808f1, https://usegalaxy.org.au/published/workflow?id=a77ce877e786d44a, https://usegalaxy.org.au/published/workflow?id=a9e59d38c6c710bc, https://usegalaxy.org.au/published/workflow?id=ae2a397837b232b1, https://usegalaxy.org.au/published/workflow?id=b03b577156e4db5b, https://usegalaxy.org.au/published/workflow?id=b432a1312859edd2, https://usegalaxy.org.au/published/workflow?id=b517cabb697491a0, https://usegalaxy.org.au/published/workflow?id=b53f82aaf32fbaa9, https://usegalaxy.org.au/published/workflow?id=b601f48ecec15bf4, https://usegalaxy.org.au/published/workflow?id=b7226d37b25df833, https://usegalaxy.org.au/published/workflow?id=b920b02a23f94d11, https://usegalaxy.org.au/published/workflow?id=b9e82e3fae56d8b4, https://usegalaxy.org.au/published/workflow?id=bc4e3115586cbe62, https://usegalaxy.org.au/published/workflow?id=be96bb47b6d6435a, https://usegalaxy.org.au/published/workflow?id=c2dee690320f9845, https://usegalaxy.org.au/published/workflow?id=c622bd03677314aa, https://usegalaxy.org.au/published/workflow?id=c7e1f666a3366823, https://usegalaxy.org.au/published/workflow?id=c853aa707fcddf4e, https://usegalaxy.org.au/published/workflow?id=c8d18e2c03dca796, https://usegalaxy.org.au/published/workflow?id=c9156ca3df2b595c, https://usegalaxy.org.au/published/workflow?id=cbf022e349d726d9, https://usegalaxy.org.au/published/workflow?id=ccc6602623583bcc, https://usegalaxy.org.au/published/workflow?id=ccfae75390038ced, https://usegalaxy.org.au/published/workflow?id=cf775b8ff0745456, https://usegalaxy.org.au/published/workflow?id=d0d6743450e5060d, https://usegalaxy.org.au/published/workflow?id=d7f3fc810261e419, https://usegalaxy.org.au/published/workflow?id=df4e186069552649, https://usegalaxy.org.au/published/workflow?id=e154a9b605ea0886, https://usegalaxy.org.au/published/workflow?id=e6552643a3713b50, https://usegalaxy.org.au/published/workflow?id=ea98be0f99aaceb9, https://usegalaxy.org.au/published/workflow?id=ebd1ee73906fdea0, https://usegalaxy.org.au/published/workflow?id=ef8c22c2525063a2, https://usegalaxy.org.au/published/workflow?id=f53d8ade897b3f46, https://usegalaxy.org.au/published/workflow?id=f65b54fcffaa11e5, https://usegalaxy.org.au/published/workflow?id=fbc732db2a2821b0, https://usegalaxy.org.au/published/workflow?id=fe5542c99cdc57ce, https://usegalaxy.org/published/workflow?id=019be65613876562, https://usegalaxy.org/published/workflow?id=0392de36b6f55a8f, https://usegalaxy.org/published/workflow?id=06eaa5b141fe7a08, https://usegalaxy.org/published/workflow?id=07e761b2501971c6, https://usegalaxy.org/published/workflow?id=0993daadf2db5f51, https://usegalaxy.org/published/workflow?id=0b85fb10ed25d34e, https://usegalaxy.org/published/workflow?id=0e3e3958f55c606e, https://usegalaxy.org/published/workflow?id=1234a128adc25b03, https://usegalaxy.org/published/workflow?id=16910402667eec78, https://usegalaxy.org/published/workflow?id=170287dcfb9de475, https://usegalaxy.org/published/workflow?id=183254b3565bcb04, https://usegalaxy.org/published/workflow?id=195a608c481040de, https://usegalaxy.org/published/workflow?id=19ce6cf93298e268, https://usegalaxy.org/published/workflow?id=1b434bfc3aac0022, https://usegalaxy.org/published/workflow?id=1e264fc06d87899f, https://usegalaxy.org/published/workflow?id=1ea88ca80a7f0038, https://usegalaxy.org/published/workflow?id=1f28e673ea725541, https://usegalaxy.org/published/workflow?id=1f98df1adba71b98, https://usegalaxy.org/published/workflow?id=2125db88b4a71c09, https://usegalaxy.org/published/workflow?id=226b506d1fc30e96, https://usegalaxy.org/published/workflow?id=23eeee48217654d4, https://usegalaxy.org/published/workflow?id=25cdc47baba556c5, https://usegalaxy.org/published/workflow?id=28c7e8269d478244, https://usegalaxy.org/published/workflow?id=2967ef82911f2cca, https://usegalaxy.org/published/workflow?id=2a4823c060dd216e, https://usegalaxy.org/published/workflow?id=2b09f3c9465ee054, https://usegalaxy.org/published/workflow?id=2b6245843e632c05, https://usegalaxy.org/published/workflow?id=2b820beaeb49dd64, https://usegalaxy.org/published/workflow?id=2dceaa255cc8cf83, https://usegalaxy.org/published/workflow?id=2f1469dab87a3649, https://usegalaxy.org/published/workflow?id=2f774500d5bec9a6, https://usegalaxy.org/published/workflow?id=2ffae50d0916b641, https://usegalaxy.org/published/workflow?id=305eafecadfa8815, https://usegalaxy.org/published/workflow?id=31186e478383465b, https://usegalaxy.org/published/workflow?id=3179c157fa5a2fdd, https://usegalaxy.org/published/workflow?id=31cc891be77cbc6f, https://usegalaxy.org/published/workflow?id=31ed5a2bcc8da51a, https://usegalaxy.org/published/workflow?id=325783f21bc5fef6, https://usegalaxy.org/published/workflow?id=349f1bcdbc84045f, https://usegalaxy.org/published/workflow?id=3511da8b41b1fb5d, https://usegalaxy.org/published/workflow?id=357225c624e796b5, https://usegalaxy.org/published/workflow?id=375f5142c207a768, https://usegalaxy.org/published/workflow?id=3ab66315f50501f0, https://usegalaxy.org/published/workflow?id=3ad9cdcda44b7dfb, https://usegalaxy.org/published/workflow?id=3ba73f679558017c, https://usegalaxy.org/published/workflow?id=3c1e2bbb1a77cc30, https://usegalaxy.org/published/workflow?id=3e57e668cf698d19, https://usegalaxy.org/published/workflow?id=3e6c9ab5ef3250ae, https://usegalaxy.org/published/workflow?id=3f252e077e0bcce5, https://usegalaxy.org/published/workflow?id=405dc14eb02ff234, https://usegalaxy.org/published/workflow?id=40a65b5bc1dcc0b4, https://usegalaxy.org/published/workflow?id=412da1489d6aed45, https://usegalaxy.org/published/workflow?id=42bc3a770f0ab6b8, https://usegalaxy.org/published/workflow?id=435f0340bf00c940, https://usegalaxy.org/published/workflow?id=43cea919ebf9d978, https://usegalaxy.org/published/workflow?id=442a2868873e7f77, https://usegalaxy.org/published/workflow?id=44bcae0e352563f9, https://usegalaxy.org/published/workflow?id=450c2181f89e6b23, https://usegalaxy.org/published/workflow?id=46207bf9ce5ee26a, https://usegalaxy.org/published/workflow?id=4680511d4daad5d7, https://usegalaxy.org/published/workflow?id=49a07807fcea8158, https://usegalaxy.org/published/workflow?id=4ba61941f31f0215, https://usegalaxy.org/published/workflow?id=4bf38f5b45faa8a1, https://usegalaxy.org/published/workflow?id=4bf73376661baafd, https://usegalaxy.org/published/workflow?id=4c840284d2984fa0, https://usegalaxy.org/published/workflow?id=4c996921fb6a2334, https://usegalaxy.org/published/workflow?id=4ffdb2cf21759d26, https://usegalaxy.org/published/workflow?id=507c817755b2410d, https://usegalaxy.org/published/workflow?id=5336b9d26a083983, https://usegalaxy.org/published/workflow?id=5361db01e3b6cc0c, https://usegalaxy.org/published/workflow?id=53fdff74729a6780, https://usegalaxy.org/published/workflow?id=56427a9b9c3848bf, https://usegalaxy.org/published/workflow?id=5834e562fa403732, https://usegalaxy.org/published/workflow?id=597c4d54f8a8ebe7, https://usegalaxy.org/published/workflow?id=5f621330d6339655, https://usegalaxy.org/published/workflow?id=634bbef1f67a0e30, https://usegalaxy.org/published/workflow?id=63b3b266bde77563, https://usegalaxy.org/published/workflow?id=65f3a5772ae05a7a, https://usegalaxy.org/published/workflow?id=667493d318b86b7d, https://usegalaxy.org/published/workflow?id=676b88d0aac13fa5, https://usegalaxy.org/published/workflow?id=68832752b883c226, https://usegalaxy.org/published/workflow?id=696b2efc589afd6f, https://usegalaxy.org/published/workflow?id=6988c29ae84d2788, https://usegalaxy.org/published/workflow?id=6ba03802169c0063, https://usegalaxy.org/published/workflow?id=6c2bb2209aad5e44, https://usegalaxy.org/published/workflow?id=7185085cbe953cd9, https://usegalaxy.org/published/workflow?id=7353afb9301780e5, https://usegalaxy.org/published/workflow?id=73c20d784b7ef81a, https://usegalaxy.org/published/workflow?id=74049914e4a6c791, https://usegalaxy.org/published/workflow?id=7454015793c4adc9, https://usegalaxy.org/published/workflow?id=748c1a9d85eb61e2, https://usegalaxy.org/published/workflow?id=768cee70d9aa8cc6, https://usegalaxy.org/published/workflow?id=771345c66d5b9700, https://usegalaxy.org/published/workflow?id=778a8867b0a6ea4f, https://usegalaxy.org/published/workflow?id=78249d353038002b, https://usegalaxy.org/published/workflow?id=7a26069c2939bef9, https://usegalaxy.org/published/workflow?id=7a4d834e794407d9, https://usegalaxy.org/published/workflow?id=7af656b8ea5e7e2e, https://usegalaxy.org/published/workflow?id=7b20a62d69d53efc, https://usegalaxy.org/published/workflow?id=7b8ee08ba291d231, https://usegalaxy.org/published/workflow?id=7dba74c915f63dc1, https://usegalaxy.org/published/workflow?id=7dde0721a382ea3e, https://usegalaxy.org/published/workflow?id=7e2651e5ed17e3db, https://usegalaxy.org/published/workflow?id=7e56bee496344ddc, https://usegalaxy.org/published/workflow?id=81f1f0fd6d9235fd, https://usegalaxy.org/published/workflow?id=85e2a1d6b1d4e3d7, https://usegalaxy.org/published/workflow?id=868acaf49d0743ec, https://usegalaxy.org/published/workflow?id=86c67855acbf6124, https://usegalaxy.org/published/workflow?id=870f4988a5cc815e, https://usegalaxy.org/published/workflow?id=87eb1a8ee7a2c984, https://usegalaxy.org/published/workflow?id=89f52c97b3aee938, https://usegalaxy.org/published/workflow?id=8a01c78688beae1d, https://usegalaxy.org/published/workflow?id=8a15bda6ce7a63ec, https://usegalaxy.org/published/workflow?id=8b4945a0fb49e03e, https://usegalaxy.org/published/workflow?id=8bcab83874cbc75c, https://usegalaxy.org/published/workflow?id=8db9ccf14567d9ba, https://usegalaxy.org/published/workflow?id=8e1c6ad6ff623015, https://usegalaxy.org/published/workflow?id=90f5b512997c70f8, https://usegalaxy.org/published/workflow?id=918863756ce93725, https://usegalaxy.org/published/workflow?id=9192807702bc3de2, https://usegalaxy.org/published/workflow?id=91a4daecbb97d03e, https://usegalaxy.org/published/workflow?id=91ed290805f590de, https://usegalaxy.org/published/workflow?id=931dd3e6b1fae4f5, https://usegalaxy.org/published/workflow?id=936ed7447c8e0a2d, https://usegalaxy.org/published/workflow?id=93e69c7e7a857ca3, https://usegalaxy.org/published/workflow?id=950c7245a6c3f6e9, https://usegalaxy.org/published/workflow?id=9ab68c65337b893b, https://usegalaxy.org/published/workflow?id=9b384b774485b2f2, https://usegalaxy.org/published/workflow?id=9e1762e46ddf9a85, https://usegalaxy.org/published/workflow?id=a124d41da896779c, https://usegalaxy.org/published/workflow?id=a3ff7dbfadbd96e2, https://usegalaxy.org/published/workflow?id=a4a6d6846c1692f9, https://usegalaxy.org/published/workflow?id=a5bdab0b219b3797, https://usegalaxy.org/published/workflow?id=a97c694b3298ae44, https://usegalaxy.org/published/workflow?id=ab490af27c9ccc80, https://usegalaxy.org/published/workflow?id=ac3755c1ae5f7f16, https://usegalaxy.org/published/workflow?id=ad19db6504b6dc33, https://usegalaxy.org/published/workflow?id=af1f4dba9aaa0b52, https://usegalaxy.org/published/workflow?id=af85a2ae187409f4, https://usegalaxy.org/published/workflow?id=affdc1bf42475cc9, https://usegalaxy.org/published/workflow?id=b12f99e2233fcca6, https://usegalaxy.org/published/workflow?id=b1b4fc510099d592, https://usegalaxy.org/published/workflow?id=b31ab9e76409a9b7, https://usegalaxy.org/published/workflow?id=b34ba9b2e4d8f050, https://usegalaxy.org/published/workflow?id=b6d535f210efa18e, https://usegalaxy.org/published/workflow?id=b7c67632a6eabda5, https://usegalaxy.org/published/workflow?id=b8ed069eea7879e7, https://usegalaxy.org/published/workflow?id=ba4815ec62edab04, https://usegalaxy.org/published/workflow?id=bbc894a79eb0e769, https://usegalaxy.org/published/workflow?id=bd2ce9a97c1598df, https://usegalaxy.org/published/workflow?id=bf79271a438ffa54, https://usegalaxy.org/published/workflow?id=bfd2e7e63d3e6856, https://usegalaxy.org/published/workflow?id=c07476a937b4e52e, https://usegalaxy.org/published/workflow?id=c74e3a24751d9924, https://usegalaxy.org/published/workflow?id=c75acc1ab44c121f, https://usegalaxy.org/published/workflow?id=c7693951c6215e19, https://usegalaxy.org/published/workflow?id=cce88bc57b180d09, https://usegalaxy.org/published/workflow?id=cdf5dffbed938d49, https://usegalaxy.org/published/workflow?id=d02b4d7483936b73, https://usegalaxy.org/published/workflow?id=d08135fa13d1745e, https://usegalaxy.org/published/workflow?id=d136d24e4c96962a, https://usegalaxy.org/published/workflow?id=d1ca40dd7e591025, https://usegalaxy.org/published/workflow?id=d2dec03b33af1b2f, https://usegalaxy.org/published/workflow?id=d341660f3d1ce8bf, https://usegalaxy.org/published/workflow?id=d485bf21a5069fe4, https://usegalaxy.org/published/workflow?id=d4b2b85db47c405e, https://usegalaxy.org/published/workflow?id=dcbc71347300822d, https://usegalaxy.org/published/workflow?id=deea71ccac30c7ea, https://usegalaxy.org/published/workflow?id=e12e642b88a0fe08, https://usegalaxy.org/published/workflow?id=e31abcc04c5c69bc, https://usegalaxy.org/published/workflow?id=e325b97b81b10edb, https://usegalaxy.org/published/workflow?id=e50e36a25bae863c, https://usegalaxy.org/published/workflow?id=e53b695ff681b675, https://usegalaxy.org/published/workflow?id=e55ca98817c1855e, https://usegalaxy.org/published/workflow?id=e817b5b275b4952f, https://usegalaxy.org/published/workflow?id=eab7347464872b4c, https://usegalaxy.org/published/workflow?id=ebe7f93204402a5a, https://usegalaxy.org/published/workflow?id=f09033420c6267ab, https://usegalaxy.org/published/workflow?id=f18e6fa5270fcd37, https://usegalaxy.org/published/workflow?id=f3c8093c5b8a7233, https://usegalaxy.org/published/workflow?id=f58c90061c31bd48, https://usegalaxy.org/published/workflow?id=f7d1c6be4e4c3357, https://usegalaxy.org/published/workflow?id=f80b80aa7fb196ba, https://usegalaxy.org/published/workflow?id=f93a4f6b5f3aaaed, https://usegalaxy.org/published/workflow?id=fa36d9b50e956917, https://usegalaxy.org/published/workflow?id=fb98ef955b3dbd4b, https://usegalaxy.org/published/workflow?id=ff3ade25b35f4893, https://workflowhub.eu/workflows/1057?version=8, https://workflowhub.eu/workflows/1062?version=1, https://workflowhub.eu/workflows/109?version=9, https://workflowhub.eu/workflows/110?version=11, https://workflowhub.eu/workflows/1201?version=4, https://workflowhub.eu/workflows/138?version=9, https://workflowhub.eu/workflows/1391?version=1, https://workflowhub.eu/workflows/1495?version=1, https://workflowhub.eu/workflows/1632?version=1, https://workflowhub.eu/workflows/246?version=4, https://workflowhub.eu/workflows/248?version=4, https://workflowhub.eu/workflows/249?version=4, https://workflowhub.eu/workflows/354?version=1, https://workflowhub.eu/workflows/356?version=1, https://workflowhub.eu/workflows/400?version=12, https://workflowhub.eu/workflows/401?version=13, https://workflowhub.eu/workflows/439?version=3, https://workflowhub.eu/workflows/519?version=1, https://workflowhub.eu/workflows/612?version=23, https://workflowhub.eu/workflows/622?version=11, https://workflowhub.eu/workflows/625?version=23, https://workflowhub.eu/workflows/628?version=1, https://workflowhub.eu/workflows/629?version=1, https://workflowhub.eu/workflows/632?version=10, https://workflowhub.eu/workflows/633?version=21, https://workflowhub.eu/workflows/642?version=23, https://workflowhub.eu/workflows/738?version=3, https://workflowhub.eu/workflows/751?version=16 |
galaxy-interface/workflow-automation, microbiome/pathogen-detection-from-nanopore-foodborne-data, variant-analysis/pox-tiled-amplicon |
|
compress_file |
compress_file |
Compress files. |
2022-02-04 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/compress_file |
0.1.0 |
gzip |
|
To update |
Text Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/compress_file |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/compress_file |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
329 |
329 |
7583 |
7583 |
388 |
388 |
5749 |
5749 |
73 |
73 |
12589 |
12589 |
0 |
0 |
0 |
0 |
25921 |
25921 |
790 |
790 |
https://dev.workflowhub.eu/workflows/1360?version=1, https://usegalaxy.eu/published/workflow?id=2062c7e1c50b05f3, https://usegalaxy.eu/published/workflow?id=32a0c4bbe6f9add9, https://usegalaxy.eu/published/workflow?id=c7f34c67c9054234, https://usegalaxy.eu/published/workflow?id=e71ae1076d5f0584, https://usegalaxy.org.au/published/workflow?id=2f49a0a03d99c57a, https://usegalaxy.org.au/published/workflow?id=614898119cf0dabf, https://usegalaxy.org.au/published/workflow?id=8004dce1906ec057, https://usegalaxy.org.au/published/workflow?id=92fcdd490831c6c5, https://usegalaxy.org/published/workflow?id=5f621330d6339655, https://usegalaxy.org/published/workflow?id=67b9046dc5dbc009, https://usegalaxy.org/published/workflow?id=982a3eb2b4c4f5ae, https://workflowhub.eu/workflows/1648?version=1, https://workflowhub.eu/workflows/738?version=3 |
assembly/mitochondrion-assembly |
|
concoct |
concoct, concoct_coverage_table, concoct_cut_up_fasta, concoct_extract_fasta_bins, concoct_merge_cut_up_clustering |
CONCOCT (Clustering cONtigs with COverage and ComposiTion) does unsupervised binning of metagenomic contigs byusing nucleotide composition - kmer frequencies - and coverage data for multiple samples. CONCOCT can accurately(up to species level) bin metagenomic contigs. |
2022-02-18 |
https://github.com/BinPro/CONCOCT |
1.1.0 |
concoct |
1.1.0 |
Up-to-date |
Metagenomics |
Sequence clustering, Read binning |
Sequence clustering, Read binning |
Metagenomics |
Metagenomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/concoct |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/concoct |
concoct |
CONCOCT |
A program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads. |
|
5 |
0 |
5 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
0 |
0 |
74 |
74 |
5424 |
5424 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2946 |
2946 |
8370 |
8370 |
76 |
76 |
https://usegalaxy.eu/published/workflow?id=0563f58718be932d, https://usegalaxy.eu/published/workflow?id=1e5f1d9a51032e44, https://usegalaxy.eu/published/workflow?id=3f6c7249ef71ae41, https://usegalaxy.eu/published/workflow?id=43098b8afe78b071, https://usegalaxy.eu/published/workflow?id=58f779d238d569dc, https://usegalaxy.eu/published/workflow?id=7ecd92cb382d8168, https://usegalaxy.eu/published/workflow?id=83c5bf0208f4d217, https://usegalaxy.eu/published/workflow?id=97312d273b6e8bd9, https://usegalaxy.eu/published/workflow?id=aa5b077da1d36b23, https://usegalaxy.eu/published/workflow?id=b0377f05f97b18b1, https://usegalaxy.eu/published/workflow?id=ce5c9287a67e6085, https://workflowhub.eu/workflows/1352?version=3 |
|
|
contig_annotation_tool |
cat_add_names, cat_bins, cat_contigs, cat_prepare, cat_summarise |
Contig Annotation Tool (CAT) |
2019-11-27 |
https://github.com/dutilh/CAT |
5.2.3 |
cat |
6.0.1 |
To update |
Metagenomics |
Taxonomic classification, Sequence assembly, Coding region prediction |
Taxonomic classification, Sequence assembly, Coding region prediction |
Metagenomics, Metagenomic sequencing, Taxonomy, Sequence assembly |
Metagenomics, Metagenomic sequencing, Taxonomy, Sequence assembly |
iuc |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/cat |
cat_bins |
CAT and BAT |
Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both known and (highly) unknown microorganisms, as generated by contemporary metagenomics studies. The core algorithm of both programs involves gene calling, mapping of predicted ORFs against the nr protein database, and voting-based classification of the entire contig / MAG based on classification of the individual ORFs. |
|
5 |
2 |
5 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
5 |
5 |
0 |
226 |
231 |
16563 |
16609 |
203 |
203 |
1592 |
1592 |
70 |
70 |
693 |
693 |
0 |
0 |
0 |
0 |
18894 |
18848 |
504 |
499 |
https://usegalaxy.eu/published/workflow?id=02631612a43a4d9b, https://usegalaxy.eu/published/workflow?id=3eaa913306c16146, https://usegalaxy.eu/published/workflow?id=6158c3b5fc12044e, https://usegalaxy.eu/published/workflow?id=6416cfdbd5273063, https://usegalaxy.eu/published/workflow?id=667bac8d7453e5f1, https://usegalaxy.eu/published/workflow?id=8deb08d4f228e198, https://usegalaxy.eu/published/workflow?id=d57d41e306241396, https://usegalaxy.org/published/workflow?id=33d90e718ce500ef |
|
|
control_freec |
control_freec |
Control-FREEC is a tool for detection of copy-number changes and allelic imbalances (including LOH) using deep-sequencing data originally developed by the Bioinformatics Laboratory of Institut Curie (Paris). It automatically computes, normalizes, segments copy number and beta allele frequency (BAF) profiles, then calls copy number alterations and LOH. |
2020-07-22 |
http://boevalab.inf.ethz.ch/FREEC/ |
11.6 |
gawk |
|
To update |
Variant Analysis |
Copy number estimation, Variant calling, Genome alignment |
Copy number estimation, Variant calling, Genome alignment |
DNA structural variation, Oncology, Human genetics, Data mining |
Oncology, Human genetics, Data mining |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/freec |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/freec |
freec |
FREEC |
A tool for control-free copy number alteration (CNA) and allelic imbalances (LOH) detection using deep-sequencing data, particularly useful for cancer studies. |
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
102 |
102 |
1432 |
1432 |
0 |
0 |
0 |
0 |
3 |
3 |
96 |
96 |
0 |
0 |
0 |
0 |
1528 |
1528 |
105 |
105 |
https://dev.workflowhub.eu/workflows/1118?version=1, https://usegalaxy.eu/published/workflow?id=220961d803697f54, https://usegalaxy.eu/published/workflow?id=2c3d05023c02113e, https://usegalaxy.eu/published/workflow?id=5ed38d8114bcd6f7, https://usegalaxy.eu/published/workflow?id=6ed1016dfdf9f928, https://usegalaxy.eu/published/workflow?id=75e88603745e069e, https://usegalaxy.eu/published/workflow?id=7cc253b53379b727, https://usegalaxy.eu/published/workflow?id=b1d1694b95ed10e1, https://workflowhub.eu/workflows/1651?version=1, https://workflowhub.eu/workflows/676?version=1 |
variant-analysis/somatic-variant-discovery |
|
coreprofiler |
coreprofiler_allele_calling |
CoreProfiler, a tool for cgMLST allele calling from bacterial genome assemblies |
2025-07-22 |
https://gitlab.com/ifb-elixirfr/abromics/coreprofiler |
1.1.3 |
coreprofiler |
1.1.3 |
Up-to-date |
Variant Analysis |
Multilocus sequence typing |
Multilocus sequence typing |
Microbiology, Bioinformatics, Phylogenetics |
Microbiology, Bioinformatics, Phylogenetics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/coreprofiler |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/coreprofiler |
coreprofiler |
CoreProfiler |
CoreProfiler is a cgMLST (core genome multilocus sequence typing) software that identifies alleles in bacterial genome assemblies by comparing them to a reference allele scheme. It detects both exact matches to known alleles and potential novel alleles using a two-step BLAST-based approach, enabling robust and reproducible strain genotyping. |
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
cosg |
cosg |
Marker gene identification for single-cell sequencing data using COSG. |
2024-05-29 |
https://github.com/genecell/COSG |
1.0.1 |
cosg |
1.0.3 |
To update |
Transcriptomics, Sequence Analysis, Single Cell |
Nucleic acid sequence analysis |
Nucleic acid sequence analysis |
Bioinformatics |
Bioinformatics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/cosg/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/cosg |
cosg |
COSG |
COSG is a cosine similarity-based method for more accurate and scalable marker gene identification. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
coverage_report |
CoverageReport2 |
Generate Detailed Coverage Report from BAM file |
2017-10-16 |
https://github.com/galaxyproject/tools-iuc |
0.0.4 |
perl-number-format |
1.76 |
To update |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/coverage_report |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/coverage_report |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
coverm |
coverm_contig, coverm_genome |
CoverM genome and contig wrappers |
2022-04-26 |
https://github.com/wwood/CoverM |
0.7.0 |
coverm |
0.7.0 |
Up-to-date |
Sequence Analysis |
Local alignment |
Local alignment |
Metagenomics, Sequence analysis |
Metagenomics, Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tools/coverm |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/coverm |
coverm |
CoverM |
Read coverage calculator for metagenomics |
|
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
102 |
102 |
1450 |
1450 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
467 |
467 |
1917 |
1917 |
106 |
106 |
https://usegalaxy.eu/published/workflow?id=0563f58718be932d, https://usegalaxy.eu/published/workflow?id=1e5f1d9a51032e44, https://usegalaxy.eu/published/workflow?id=3f6c7249ef71ae41, https://usegalaxy.eu/published/workflow?id=6158c3b5fc12044e, https://usegalaxy.eu/published/workflow?id=667bac8d7453e5f1, https://usegalaxy.eu/published/workflow?id=7ecd92cb382d8168, https://usegalaxy.eu/published/workflow?id=8deb08d4f228e198, https://usegalaxy.eu/published/workflow?id=97312d273b6e8bd9, https://usegalaxy.eu/published/workflow?id=d57d41e306241396, https://workflowhub.eu/workflows/1352?version=3, https://workflowhub.eu/workflows/1390?version=2 |
assembly/metagenomics-assembly, microbiome/metagenomics-assembly |
|
cramino |
cramino |
A tool for quick quality assessment of cram and bam files, intended for long read sequencing. |
2025-06-17 |
https://github.com/wdecoster/cramino |
1.1.0 |
cramino |
1.1.0 |
Up-to-date |
Statistics, Nanopore |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/cramino/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/cramino |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
crispr_studio |
crispr_studio |
CRISPR Studio is a program developed to facilitate and accelerate CRISPR array visualization. |
2019-08-13 |
https://github.com/moineaulab/CRISPRStudio |
1+galaxy0 |
crispr_studio |
1 |
To update |
Sequence Analysis |
Visualisation |
Visualisation |
Sequence analysis, Genomics, Data visualisation |
Sequence analysis, Genomics, Data visualisation |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/crispr_studio/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/crispr_studio |
crisprstudio |
CRISPRStudio |
CRISPRStudio is a program developed to facilitate and accelerate CRISPR array visualization. It works by first comparing spacers sequence homology in a dataset, then assigning a two-color-code to each cluster of spacers and finally writing an svg file, which can be opened in graphics vector editor. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
80 |
82 |
2072 |
2090 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2090 |
2072 |
82 |
80 |
|
|
|
crosscontamination_barcode_filter |
crosscontamination_barcode_filter |
Barcode contamination discovery tool |
2018-07-27 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/crosscontamination_barcode_filter |
0.3 |
r-ggplot2 |
2.2.1 |
To update |
Transcriptomics, Visualization, Single Cell |
Filtering, Sequence contamination filtering, Sequencing quality control, RNA-Seq analysis |
Filtering, Sequence contamination filtering, RNA-Seq analysis |
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/crosscontamination_barcode_filter |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/crosscontamination_barcode_filter |
cross-contamination_barcode_filter |
Cross-contamination Barcode Filter |
This tool produces plots enabling the discovery of cross-contamination of samples across the full selection of barcodes used in a sequencing plate. It also filters false barcodes from each batch and retains only the 'real' barcodes. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
75 |
97 |
216 |
412 |
48 |
48 |
141 |
141 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
553 |
357 |
145 |
123 |
|
|
|
crossmap |
crossmap_bam, crossmap_bed, crossmap_bw, crossmap_gff, crossmap_region, crossmap_vcf, crossmap_wig |
CrossMap converts genome coordinates or annotation files between genome assemblies |
2016-04-04 |
http://crossmap.sourceforge.net/ |
0.7.3 |
crossmap |
0.7.3 |
Up-to-date |
Convert Formats, Genomic Interval Operations |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/crossmap |
|
|
|
|
5 |
0 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
0 |
0 |
0 |
0 |
5 |
6 |
5 |
0 |
92 |
97 |
2197 |
2340 |
244 |
247 |
5406 |
5415 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7755 |
7603 |
344 |
336 |
|
|
|
cuffcompare |
cuffcompare |
Galaxy wrappers for the Cuffcompare tool. |
2020-06-08 |
http://cole-trapnell-lab.github.io/cufflinks/ |
2.2.1 |
cufflinks |
2.2.1 |
Up-to-date |
Transcriptomics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffcompare |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/cufflinks/cuffcompare |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
1 |
1 |
1 |
0 |
171 |
307 |
773 |
1229 |
692 |
5769 |
2030 |
25038 |
44 |
98 |
234 |
493 |
65 |
65 |
310 |
328 |
27088 |
3347 |
6239 |
972 |
https://usegalaxy.org/published/workflow?id=2ae1b71ea4634d1e, https://usegalaxy.org/published/workflow?id=2b1c98865a3ce11a, https://usegalaxy.org/published/workflow?id=52a2cca52985cdc7, https://usegalaxy.org/published/workflow?id=61b7ad6588f7db41, https://usegalaxy.org/published/workflow?id=712d9ae42b45c4b9, https://usegalaxy.org/published/workflow?id=7c3b5398dd05a6a5, https://usegalaxy.org/published/workflow?id=82681bd5f059e39a, https://usegalaxy.org/published/workflow?id=930dfd894899173e, https://usegalaxy.org/published/workflow?id=a57db139837dd24c, https://usegalaxy.org/published/workflow?id=b4174fd0cf4f865c, https://usegalaxy.org/published/workflow?id=eae740bac11ecc91, https://usegalaxy.org/published/workflow?id=f47f0b25c1405128, https://usegalaxy.org/published/workflow?id=fcce98489c8ca7a3 |
|
|
cuffdiff |
cuffdiff |
Galaxy wrappers for the Cuffdiff tool. |
2020-06-08 |
http://cole-trapnell-lab.github.io/cufflinks/ |
2.2.1 |
cufflinks |
2.2.1 |
Up-to-date |
Transcriptomics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffdiff |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/cufflinks/cuffdiff |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
1 |
1 |
1 |
0 |
561 |
774 |
3571 |
6257 |
4588 |
20492 |
21851 |
117882 |
101 |
616 |
712 |
4231 |
1 |
1 |
4 |
4 |
128374 |
26138 |
21883 |
5251 |
https://usegalaxy.eu/published/workflow?id=0ab3e47ebd3b520e, https://usegalaxy.eu/published/workflow?id=60f2a8721e203057, https://usegalaxy.org.au/published/workflow?id=0427bd5f28789a1f, https://usegalaxy.org.au/published/workflow?id=115896e8f4059e44, https://usegalaxy.org.au/published/workflow?id=126116a92f2e9a68, https://usegalaxy.org.au/published/workflow?id=1624a678c6791ca6, https://usegalaxy.org.au/published/workflow?id=189c584ea4bde59a, https://usegalaxy.org.au/published/workflow?id=1ac197bae296b2bf, https://usegalaxy.org.au/published/workflow?id=39bb22274ede7500, https://usegalaxy.org.au/published/workflow?id=427e27f87b8048a3, https://usegalaxy.org.au/published/workflow?id=50fdbdb8f807c021, https://usegalaxy.org.au/published/workflow?id=52d2fb868defa474, https://usegalaxy.org.au/published/workflow?id=581c455f74aa55a4, https://usegalaxy.org.au/published/workflow?id=60c5675ed2f4a7d8, https://usegalaxy.org.au/published/workflow?id=73854e391eec51d0, https://usegalaxy.org.au/published/workflow?id=79572be1bf642251, https://usegalaxy.org.au/published/workflow?id=7a63fff9a122e60c, https://usegalaxy.org.au/published/workflow?id=80a1493fb9593bb3, https://usegalaxy.org.au/published/workflow?id=84589f66ec87ad99, https://usegalaxy.org.au/published/workflow?id=89531196e32e330e, https://usegalaxy.org.au/published/workflow?id=9176f8ebac92d10c, https://usegalaxy.org.au/published/workflow?id=98449d19a2e8022f, https://usegalaxy.org.au/published/workflow?id=9beae9b0c863d335, https://usegalaxy.org.au/published/workflow?id=a3efc48b5992374e, https://usegalaxy.org.au/published/workflow?id=b518ee5540ed01fd, https://usegalaxy.org.au/published/workflow?id=cc6de673126c56cb, https://usegalaxy.org.au/published/workflow?id=d0933b5040adf902, https://usegalaxy.org.au/published/workflow?id=d1b604a5441dc4b0, https://usegalaxy.org.au/published/workflow?id=d3989c6c2c663cd3, https://usegalaxy.org.au/published/workflow?id=d42df3bb51a94a52, https://usegalaxy.org.au/published/workflow?id=d68e167c3423c795, https://usegalaxy.org.au/published/workflow?id=d8ee4c7ef846e30f, https://usegalaxy.org.au/published/workflow?id=ec202ccfb5f03d0d, https://usegalaxy.org.au/published/workflow?id=fd1b3d7f2d34ff09, https://usegalaxy.org/published/workflow?id=0052e9b1b7bfec69, https://usegalaxy.org/published/workflow?id=035c28a247976f2c, https://usegalaxy.org/published/workflow?id=0599241ce8eae217, https://usegalaxy.org/published/workflow?id=07e4414905458c86, https://usegalaxy.org/published/workflow?id=10fa713ca3076a47, https://usegalaxy.org/published/workflow?id=17beb47e45a7690c, https://usegalaxy.org/published/workflow?id=2566f7c6bef19b18, https://usegalaxy.org/published/workflow?id=29a80db9f3208c29, https://usegalaxy.org/published/workflow?id=2ae1b71ea4634d1e, https://usegalaxy.org/published/workflow?id=2b1c98865a3ce11a, https://usegalaxy.org/published/workflow?id=3686146fc097c66f, https://usegalaxy.org/published/workflow?id=41c09a87c6cd5f75, https://usegalaxy.org/published/workflow?id=45d37579deee182c, https://usegalaxy.org/published/workflow?id=462261c5e22635f0, https://usegalaxy.org/published/workflow?id=52a2cca52985cdc7, https://usegalaxy.org/published/workflow?id=58ce6470337a190d, https://usegalaxy.org/published/workflow?id=5a86d93c01c4cf39, https://usegalaxy.org/published/workflow?id=5aa2caa2dcae1477, https://usegalaxy.org/published/workflow?id=5cb86cdc33296cc2, https://usegalaxy.org/published/workflow?id=712d9ae42b45c4b9, https://usegalaxy.org/published/workflow?id=77e4bb9d6aea0c9a, https://usegalaxy.org/published/workflow?id=794e7e952003d3d9, https://usegalaxy.org/published/workflow?id=7c3b5398dd05a6a5, https://usegalaxy.org/published/workflow?id=82681bd5f059e39a, https://usegalaxy.org/published/workflow?id=87fab09e4c592435, https://usegalaxy.org/published/workflow?id=8b2c8c8ce121177d, https://usegalaxy.org/published/workflow?id=930dfd894899173e, https://usegalaxy.org/published/workflow?id=a036991efb5503ab, https://usegalaxy.org/published/workflow?id=a0503b2ea964127b, https://usegalaxy.org/published/workflow?id=a57db139837dd24c, https://usegalaxy.org/published/workflow?id=aae5b6d9beb860ba, https://usegalaxy.org/published/workflow?id=acec9c2c67fcaf13, https://usegalaxy.org/published/workflow?id=adaa12b855e4c336, https://usegalaxy.org/published/workflow?id=b23c3db251eca105, https://usegalaxy.org/published/workflow?id=b4174fd0cf4f865c, https://usegalaxy.org/published/workflow?id=b5ac201b63a32a9b, https://usegalaxy.org/published/workflow?id=bdbfd1206c59469a, https://usegalaxy.org/published/workflow?id=c64719e91e7346a2, https://usegalaxy.org/published/workflow?id=d69ea491b99016f4, https://usegalaxy.org/published/workflow?id=d72e33effe07de02, https://usegalaxy.org/published/workflow?id=df7459b7e8acb872, https://usegalaxy.org/published/workflow?id=e7bfa3c733835b22, https://usegalaxy.org/published/workflow?id=f47f0b25c1405128, https://usegalaxy.org/published/workflow?id=fa9cb11930ef8297, https://usegalaxy.org/published/workflow?id=fcce98489c8ca7a3, https://workflowhub.eu/workflows/40?version=1 |
|
|
cufflinks |
cufflinks |
Galaxy wrappers for the Cufflinks tool. |
2020-06-08 |
http://cole-trapnell-lab.github.io/cufflinks/ |
2.2.1 |
cufflinks |
2.2.1 |
Up-to-date |
Transcriptomics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cufflinks |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/cufflinks/cufflinks |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
1 |
1 |
1 |
0 |
908 |
1301 |
26309 |
34334 |
6500 |
27355 |
65979 |
352609 |
366 |
844 |
3635 |
10341 |
44 |
45 |
1007 |
1051 |
398335 |
96930 |
29545 |
7818 |
https://usegalaxy.eu/published/workflow?id=0ab3e47ebd3b520e, https://usegalaxy.eu/published/workflow?id=0eb137cd936bbfe0, https://usegalaxy.eu/published/workflow?id=249c5d6698c8b98c, https://usegalaxy.eu/published/workflow?id=2d08a73dd8ff99e9, https://usegalaxy.eu/published/workflow?id=406e6ef0dfb38628, https://usegalaxy.eu/published/workflow?id=409336bf210033a2, https://usegalaxy.eu/published/workflow?id=5be158931abca947, https://usegalaxy.eu/published/workflow?id=60f2a8721e203057, https://usegalaxy.eu/published/workflow?id=6ebd09100fc98878, https://usegalaxy.eu/published/workflow?id=86e2e2faa2e0bd46, https://usegalaxy.eu/published/workflow?id=873e6ac4699ed7f6, https://usegalaxy.eu/published/workflow?id=87fea062a9646a31, https://usegalaxy.eu/published/workflow?id=96c61a584cb2e5e9, https://usegalaxy.eu/published/workflow?id=9da26c5131603b9f, https://usegalaxy.eu/published/workflow?id=a3da32b6b45da639, https://usegalaxy.eu/published/workflow?id=aff44f1665a14e23, https://usegalaxy.eu/published/workflow?id=b426e137396acb14, https://usegalaxy.eu/published/workflow?id=bace9aebab9d4ce3, https://usegalaxy.eu/published/workflow?id=c4fa05e209a2f082, https://usegalaxy.eu/published/workflow?id=c98a14fcf5998159, https://usegalaxy.eu/published/workflow?id=d3494c6124f820b2, https://usegalaxy.eu/published/workflow?id=d3edc3f0659a5e5b, https://usegalaxy.eu/published/workflow?id=d6809603f46de1b3, https://usegalaxy.eu/published/workflow?id=deec04097a871646, https://usegalaxy.eu/published/workflow?id=ead0f264798f9418, https://usegalaxy.eu/published/workflow?id=ef1d11b79a2e1727, https://usegalaxy.eu/published/workflow?id=fa53b172def3fe75, https://usegalaxy.org.au/published/workflow?id=0427bd5f28789a1f, https://usegalaxy.org.au/published/workflow?id=115896e8f4059e44, https://usegalaxy.org.au/published/workflow?id=126116a92f2e9a68, https://usegalaxy.org.au/published/workflow?id=1624a678c6791ca6, https://usegalaxy.org.au/published/workflow?id=189c584ea4bde59a, https://usegalaxy.org.au/published/workflow?id=1ac197bae296b2bf, https://usegalaxy.org.au/published/workflow?id=2a97585556d53a43, https://usegalaxy.org.au/published/workflow?id=39bb22274ede7500, https://usegalaxy.org.au/published/workflow?id=427e27f87b8048a3, https://usegalaxy.org.au/published/workflow?id=50fdbdb8f807c021, https://usegalaxy.org.au/published/workflow?id=52d2fb868defa474, https://usegalaxy.org.au/published/workflow?id=56bda8e4b0018e03, https://usegalaxy.org.au/published/workflow?id=581c455f74aa55a4, https://usegalaxy.org.au/published/workflow?id=5cd9b9338e75f254, https://usegalaxy.org.au/published/workflow?id=60c5675ed2f4a7d8, https://usegalaxy.org.au/published/workflow?id=749d8f2d26e0a111, https://usegalaxy.org.au/published/workflow?id=79572be1bf642251, https://usegalaxy.org.au/published/workflow?id=7a63fff9a122e60c, https://usegalaxy.org.au/published/workflow?id=7c22d726e1716f4b, https://usegalaxy.org.au/published/workflow?id=80a1493fb9593bb3, https://usegalaxy.org.au/published/workflow?id=84589f66ec87ad99, https://usegalaxy.org.au/published/workflow?id=89531196e32e330e, https://usegalaxy.org.au/published/workflow?id=8d6d4f848067f3d9, https://usegalaxy.org.au/published/workflow?id=9176f8ebac92d10c, https://usegalaxy.org.au/published/workflow?id=9b18123afbe1264b, https://usegalaxy.org.au/published/workflow?id=9beae9b0c863d335, https://usegalaxy.org.au/published/workflow?id=a3efc48b5992374e, https://usegalaxy.org.au/published/workflow?id=b03b577156e4db5b, https://usegalaxy.org.au/published/workflow?id=b2818098da6e2f82, https://usegalaxy.org.au/published/workflow?id=b517cabb697491a0, https://usegalaxy.org.au/published/workflow?id=b518ee5540ed01fd, https://usegalaxy.org.au/published/workflow?id=b7226d37b25df833, https://usegalaxy.org.au/published/workflow?id=c2dee690320f9845, https://usegalaxy.org.au/published/workflow?id=c8d18e2c03dca796, https://usegalaxy.org.au/published/workflow?id=cc6de673126c56cb, https://usegalaxy.org.au/published/workflow?id=ccc6602623583bcc, https://usegalaxy.org.au/published/workflow?id=ccfae75390038ced, https://usegalaxy.org.au/published/workflow?id=d0933b5040adf902, https://usegalaxy.org.au/published/workflow?id=d1b604a5441dc4b0, https://usegalaxy.org.au/published/workflow?id=d2073964dbe9acfa, https://usegalaxy.org.au/published/workflow?id=d3989c6c2c663cd3, https://usegalaxy.org.au/published/workflow?id=d42df3bb51a94a52, https://usegalaxy.org.au/published/workflow?id=d68e167c3423c795, https://usegalaxy.org.au/published/workflow?id=d8ee4c7ef846e30f, https://usegalaxy.org.au/published/workflow?id=ec202ccfb5f03d0d, https://usegalaxy.org.au/published/workflow?id=fd1b3d7f2d34ff09, https://usegalaxy.org/published/workflow?id=0052e9b1b7bfec69, https://usegalaxy.org/published/workflow?id=035c28a247976f2c, https://usegalaxy.org/published/workflow?id=07e4414905458c86, https://usegalaxy.org/published/workflow?id=0ac68ec25f3534da, https://usegalaxy.org/published/workflow?id=0f3f91de5f022b6e, https://usegalaxy.org/published/workflow?id=10fa713ca3076a47, https://usegalaxy.org/published/workflow?id=1234a128adc25b03, https://usegalaxy.org/published/workflow?id=17beb47e45a7690c, https://usegalaxy.org/published/workflow?id=1f28e673ea725541, https://usegalaxy.org/published/workflow?id=2125db88b4a71c09, https://usegalaxy.org/published/workflow?id=2566f7c6bef19b18, https://usegalaxy.org/published/workflow?id=2ae1b71ea4634d1e, https://usegalaxy.org/published/workflow?id=2b1c98865a3ce11a, https://usegalaxy.org/published/workflow?id=2f774500d5bec9a6, https://usegalaxy.org/published/workflow?id=3aa5df1432ee21c8, https://usegalaxy.org/published/workflow?id=3ab66315f50501f0, https://usegalaxy.org/published/workflow?id=3ad9cdcda44b7dfb, https://usegalaxy.org/published/workflow?id=3e57e668cf698d19, https://usegalaxy.org/published/workflow?id=3e6c9ab5ef3250ae, https://usegalaxy.org/published/workflow?id=42bc3a770f0ab6b8, https://usegalaxy.org/published/workflow?id=462261c5e22635f0, https://usegalaxy.org/published/workflow?id=486ee20613d58dcf, https://usegalaxy.org/published/workflow?id=48dd684196c65735, https://usegalaxy.org/published/workflow?id=52a2cca52985cdc7, https://usegalaxy.org/published/workflow?id=5336b9d26a083983, https://usegalaxy.org/published/workflow?id=53fdff74729a6780, https://usegalaxy.org/published/workflow?id=58ce6470337a190d, https://usegalaxy.org/published/workflow?id=5cb86cdc33296cc2, https://usegalaxy.org/published/workflow?id=61b7ad6588f7db41, https://usegalaxy.org/published/workflow?id=62401f33a369bac0, https://usegalaxy.org/published/workflow?id=63b3b266bde77563, https://usegalaxy.org/published/workflow?id=676b88d0aac13fa5, https://usegalaxy.org/published/workflow?id=6c49d9c25ba4ddf5, https://usegalaxy.org/published/workflow?id=712d9ae42b45c4b9, https://usegalaxy.org/published/workflow?id=778a8867b0a6ea4f, https://usegalaxy.org/published/workflow?id=794e7e952003d3d9, https://usegalaxy.org/published/workflow?id=7a26069c2939bef9, https://usegalaxy.org/published/workflow?id=7c3b5398dd05a6a5, https://usegalaxy.org/published/workflow?id=82681bd5f059e39a, https://usegalaxy.org/published/workflow?id=846b6fa2b8e20c3c, https://usegalaxy.org/published/workflow?id=868acaf49d0743ec, https://usegalaxy.org/published/workflow?id=87eb1a8ee7a2c984, https://usegalaxy.org/published/workflow?id=87fab09e4c592435, https://usegalaxy.org/published/workflow?id=89f52c97b3aee938, https://usegalaxy.org/published/workflow?id=8b2c8c8ce121177d, https://usegalaxy.org/published/workflow?id=8bcab83874cbc75c, https://usegalaxy.org/published/workflow?id=930dfd894899173e, https://usegalaxy.org/published/workflow?id=93e69c7e7a857ca3, https://usegalaxy.org/published/workflow?id=a036991efb5503ab, https://usegalaxy.org/published/workflow?id=a24092b7f00b4e2a, https://usegalaxy.org/published/workflow?id=a57db139837dd24c, https://usegalaxy.org/published/workflow?id=aae5b6d9beb860ba, https://usegalaxy.org/published/workflow?id=adaa12b855e4c336, https://usegalaxy.org/published/workflow?id=b4090679dcca6ce2, https://usegalaxy.org/published/workflow?id=b4174fd0cf4f865c, https://usegalaxy.org/published/workflow?id=b5c79535c499bc58, https://usegalaxy.org/published/workflow?id=bb9e69ae66c3d916, https://usegalaxy.org/published/workflow?id=bd2ce9a97c1598df, https://usegalaxy.org/published/workflow?id=c64719e91e7346a2, https://usegalaxy.org/published/workflow?id=c74e3a24751d9924, https://usegalaxy.org/published/workflow?id=c8653e558a68eb68, https://usegalaxy.org/published/workflow?id=d69ea491b99016f4, https://usegalaxy.org/published/workflow?id=d72e33effe07de02, https://usegalaxy.org/published/workflow?id=df7459b7e8acb872, https://usegalaxy.org/published/workflow?id=e4e5dec116e7240b, https://usegalaxy.org/published/workflow?id=e55ca98817c1855e, https://usegalaxy.org/published/workflow?id=e7bfa3c733835b22, https://usegalaxy.org/published/workflow?id=eae740bac11ecc91, https://usegalaxy.org/published/workflow?id=efb10012b8448b21, https://usegalaxy.org/published/workflow?id=f3c8093c5b8a7233, https://usegalaxy.org/published/workflow?id=f47f0b25c1405128, https://usegalaxy.org/published/workflow?id=fcce98489c8ca7a3, https://usegalaxy.org/published/workflow?id=fe2c0e4694c56b6b, https://workflowhub.eu/workflows/37?version=1, https://workflowhub.eu/workflows/400?version=12, https://workflowhub.eu/workflows/401?version=13, https://workflowhub.eu/workflows/40?version=1 |
|
|
cuffmerge |
cuffmerge |
Galaxy wrappers for the Cuffmerge tool. |
2020-06-08 |
http://cole-trapnell-lab.github.io/cufflinks/ |
2.2.1 |
cufflinks |
2.2.1 |
Up-to-date |
Transcriptomics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffmerge |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/cufflinks/cuffmerge |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
1 |
1 |
1 |
0 |
369 |
677 |
2352 |
3561 |
3243 |
13839 |
18831 |
68029 |
173 |
573 |
1115 |
3076 |
57 |
57 |
128 |
128 |
74794 |
22426 |
15146 |
3842 |
https://usegalaxy.eu/published/workflow?id=0ab3e47ebd3b520e, https://usegalaxy.eu/published/workflow?id=5be158931abca947, https://usegalaxy.eu/published/workflow?id=60f2a8721e203057, https://usegalaxy.org.au/published/workflow?id=0427bd5f28789a1f, https://usegalaxy.org.au/published/workflow?id=115896e8f4059e44, https://usegalaxy.org.au/published/workflow?id=126116a92f2e9a68, https://usegalaxy.org.au/published/workflow?id=1624a678c6791ca6, https://usegalaxy.org.au/published/workflow?id=189c584ea4bde59a, https://usegalaxy.org.au/published/workflow?id=1ac197bae296b2bf, https://usegalaxy.org.au/published/workflow?id=2a97585556d53a43, https://usegalaxy.org.au/published/workflow?id=39bb22274ede7500, https://usegalaxy.org.au/published/workflow?id=427e27f87b8048a3, https://usegalaxy.org.au/published/workflow?id=50fdbdb8f807c021, https://usegalaxy.org.au/published/workflow?id=52d2fb868defa474, https://usegalaxy.org.au/published/workflow?id=581c455f74aa55a4, https://usegalaxy.org.au/published/workflow?id=60c5675ed2f4a7d8, https://usegalaxy.org.au/published/workflow?id=79572be1bf642251, https://usegalaxy.org.au/published/workflow?id=7a63fff9a122e60c, https://usegalaxy.org.au/published/workflow?id=80a1493fb9593bb3, https://usegalaxy.org.au/published/workflow?id=84589f66ec87ad99, https://usegalaxy.org.au/published/workflow?id=89531196e32e330e, https://usegalaxy.org.au/published/workflow?id=9176f8ebac92d10c, https://usegalaxy.org.au/published/workflow?id=9beae9b0c863d335, https://usegalaxy.org.au/published/workflow?id=a3efc48b5992374e, https://usegalaxy.org.au/published/workflow?id=b2818098da6e2f82, https://usegalaxy.org.au/published/workflow?id=b518ee5540ed01fd, https://usegalaxy.org.au/published/workflow?id=cc6de673126c56cb, https://usegalaxy.org.au/published/workflow?id=d0933b5040adf902, https://usegalaxy.org.au/published/workflow?id=d1b604a5441dc4b0, https://usegalaxy.org.au/published/workflow?id=d2073964dbe9acfa, https://usegalaxy.org.au/published/workflow?id=d3989c6c2c663cd3, https://usegalaxy.org.au/published/workflow?id=d42df3bb51a94a52, https://usegalaxy.org.au/published/workflow?id=d68e167c3423c795, https://usegalaxy.org.au/published/workflow?id=d8ee4c7ef846e30f, https://usegalaxy.org.au/published/workflow?id=ec202ccfb5f03d0d, https://usegalaxy.org.au/published/workflow?id=fd1b3d7f2d34ff09, https://usegalaxy.org/published/workflow?id=035c28a247976f2c, https://usegalaxy.org/published/workflow?id=07e4414905458c86, https://usegalaxy.org/published/workflow?id=10fa713ca3076a47, https://usegalaxy.org/published/workflow?id=17beb47e45a7690c, https://usegalaxy.org/published/workflow?id=2566f7c6bef19b18, https://usegalaxy.org/published/workflow?id=2ae1b71ea4634d1e, https://usegalaxy.org/published/workflow?id=2b1c98865a3ce11a, https://usegalaxy.org/published/workflow?id=45d37579deee182c, https://usegalaxy.org/published/workflow?id=462261c5e22635f0, https://usegalaxy.org/published/workflow?id=52a2cca52985cdc7, https://usegalaxy.org/published/workflow?id=58ce6470337a190d, https://usegalaxy.org/published/workflow?id=5aa2caa2dcae1477, https://usegalaxy.org/published/workflow?id=712d9ae42b45c4b9, https://usegalaxy.org/published/workflow?id=794e7e952003d3d9, https://usegalaxy.org/published/workflow?id=82681bd5f059e39a, https://usegalaxy.org/published/workflow?id=87fab09e4c592435, https://usegalaxy.org/published/workflow?id=8b2c8c8ce121177d, https://usegalaxy.org/published/workflow?id=930dfd894899173e, https://usegalaxy.org/published/workflow?id=a036991efb5503ab, https://usegalaxy.org/published/workflow?id=aae5b6d9beb860ba, https://usegalaxy.org/published/workflow?id=adaa12b855e4c336, https://usegalaxy.org/published/workflow?id=b4174fd0cf4f865c, https://usegalaxy.org/published/workflow?id=c64719e91e7346a2, https://usegalaxy.org/published/workflow?id=d69ea491b99016f4, https://usegalaxy.org/published/workflow?id=d72e33effe07de02, https://usegalaxy.org/published/workflow?id=df7459b7e8acb872, https://usegalaxy.org/published/workflow?id=e7bfa3c733835b22, https://usegalaxy.org/published/workflow?id=eae740bac11ecc91, https://usegalaxy.org/published/workflow?id=f47f0b25c1405128, https://workflowhub.eu/workflows/37?version=1, https://workflowhub.eu/workflows/40?version=1 |
|
|
cuffnorm |
cuffnorm |
The Cuffnorm tool |
2020-06-08 |
http://cole-trapnell-lab.github.io/cufflinks/ |
2.2.1 |
cufflinks |
2.2.1 |
Up-to-date |
Transcriptomics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffnorm |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/cufflinks/cuffnorm |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
74 |
116 |
332 |
706 |
239 |
1172 |
841 |
13511 |
52 |
70 |
280 |
341 |
0 |
0 |
0 |
0 |
14558 |
1453 |
1358 |
365 |
|
|
|
cuffquant |
cuffquant |
The Cuffquant tool |
2020-06-08 |
http://cole-trapnell-lab.github.io/cufflinks/ |
2.2.1 |
cufflinks |
2.2.1 |
Up-to-date |
Transcriptomics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffquant |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/cufflinks/cuffquant |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
51 |
76 |
390 |
757 |
251 |
1321 |
1607 |
15913 |
26 |
47 |
287 |
423 |
0 |
0 |
0 |
0 |
17093 |
2284 |
1444 |
328 |
https://usegalaxy.eu/published/workflow?id=0ab3e47ebd3b520e, https://usegalaxy.org/published/workflow?id=8b2c8c8ce121177d, https://workflowhub.eu/workflows/40?version=1 |
|
|
cutadapt |
cutadapt |
Flexible tool to remove adapter sequences (and quality trim) high throughput sequencing reads (fasta/fastq). |
2018-02-20 |
https://cutadapt.readthedocs.org/en/stable/ |
5.1 |
cutadapt |
5.1 |
Up-to-date |
Fasta Manipulation, Fastq Manipulation, Sequence Analysis |
Sequence trimming, Primer removal, Read pre-processing |
Sequence trimming, Primer removal, Read pre-processing |
Genomics, Probes and primers, Sequencing |
Genomics, Probes and primers, Sequencing |
lparsons |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/cutadapt |
cutadapt |
Cutadapt |
Find and remove adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
12789 |
14098 |
283597 |
301862 |
20522 |
22709 |
359429 |
406336 |
3719 |
3921 |
69969 |
73269 |
1360 |
1361 |
36413 |
36423 |
817890 |
749408 |
42089 |
38390 |
https://dev.workflowhub.eu/workflows/1001?version=1, https://dev.workflowhub.eu/workflows/1002?version=1, https://dev.workflowhub.eu/workflows/1092?version=1, https://dev.workflowhub.eu/workflows/1099?version=1, https://dev.workflowhub.eu/workflows/1116?version=1, https://dev.workflowhub.eu/workflows/1149?version=2, https://dev.workflowhub.eu/workflows/1169?version=2, https://dev.workflowhub.eu/workflows/1179?version=2, https://dev.workflowhub.eu/workflows/1187?version=2, https://dev.workflowhub.eu/workflows/127?version=1, https://dev.workflowhub.eu/workflows/1282?version=2, https://dev.workflowhub.eu/workflows/1285?version=2, https://dev.workflowhub.eu/workflows/1291?version=2, https://dev.workflowhub.eu/workflows/1295?version=1, https://dev.workflowhub.eu/workflows/1307?version=1, https://dev.workflowhub.eu/workflows/1327?version=1, https://dev.workflowhub.eu/workflows/1329?version=5, https://dev.workflowhub.eu/workflows/574?version=1, https://usegalaxy.eu/published/workflow?id=002a51bdef00e14d, https://usegalaxy.eu/published/workflow?id=01fe4c590e608103, https://usegalaxy.eu/published/workflow?id=023a0ee62dd1f593, https://usegalaxy.eu/published/workflow?id=02655d0e4af0ee0d, https://usegalaxy.eu/published/workflow?id=03be9d62e8e4a129, https://usegalaxy.eu/published/workflow?id=06fe33c4420906bf, https://usegalaxy.eu/published/workflow?id=085c3a4c89d137b5, https://usegalaxy.eu/published/workflow?id=089e5e83b1de0511, https://usegalaxy.eu/published/workflow?id=096b75501c8e0888, https://usegalaxy.eu/published/workflow?id=0c619b25c1394a09, https://usegalaxy.eu/published/workflow?id=0cf3c2114ab65858, https://usegalaxy.eu/published/workflow?id=0eb137cd936bbfe0, https://usegalaxy.eu/published/workflow?id=1089e5c66dbcc1a3, https://usegalaxy.eu/published/workflow?id=111527fe542846af, https://usegalaxy.eu/published/workflow?id=1151052f4393852a, https://usegalaxy.eu/published/workflow?id=146cef3acb2eba75, https://usegalaxy.eu/published/workflow?id=1483534f49b826bf, https://usegalaxy.eu/published/workflow?id=14b9753269cd368f, https://usegalaxy.eu/published/workflow?id=153ba1581743d31f, https://usegalaxy.eu/published/workflow?id=165089132248a0b0, https://usegalaxy.eu/published/workflow?id=166eb3f14feffa1b, https://usegalaxy.eu/published/workflow?id=194a05d42687b524, https://usegalaxy.eu/published/workflow?id=19bb57f8cfa48bb9, https://usegalaxy.eu/published/workflow?id=1ac0a15758277730, https://usegalaxy.eu/published/workflow?id=1bb084f1bc102734, https://usegalaxy.eu/published/workflow?id=1c44bbaa5f4f8b54, https://usegalaxy.eu/published/workflow?id=1d1092f57e418c57, https://usegalaxy.eu/published/workflow?id=1da7ac8eaf891f39, https://usegalaxy.eu/published/workflow?id=1dba8278fb2786fb, https://usegalaxy.eu/published/workflow?id=1e02a7292e9974b1, https://usegalaxy.eu/published/workflow?id=1eac2ebffcbb8d59, https://usegalaxy.eu/published/workflow?id=1f2a1438e41188f2, https://usegalaxy.eu/published/workflow?id=21a3f72851f29925, https://usegalaxy.eu/published/workflow?id=21c8ee4af52a3931, https://usegalaxy.eu/published/workflow?id=249c5d6698c8b98c, https://usegalaxy.eu/published/workflow?id=24ddd188da35b061, https://usegalaxy.eu/published/workflow?id=25a209bda998412f, https://usegalaxy.eu/published/workflow?id=25aa944237d7fb82, https://usegalaxy.eu/published/workflow?id=2671a5f85b2cccfe, https://usegalaxy.eu/published/workflow?id=26c4882e320ed7b3, https://usegalaxy.eu/published/workflow?id=270b6f82efab28b2, https://usegalaxy.eu/published/workflow?id=29a855d928337f8f, https://usegalaxy.eu/published/workflow?id=2c5cae1389c11881, https://usegalaxy.eu/published/workflow?id=2cf9f0e2ab5a7f8b, https://usegalaxy.eu/published/workflow?id=2e418c5810012e5a, https://usegalaxy.eu/published/workflow?id=2f51a82838722bec, https://usegalaxy.eu/published/workflow?id=2fd462d85412444c, https://usegalaxy.eu/published/workflow?id=300301c23327f797, https://usegalaxy.eu/published/workflow?id=30e7dc81e323cbdb, https://usegalaxy.eu/published/workflow?id=3183c2abca463bb4, https://usegalaxy.eu/published/workflow?id=326d4102190b74fc, https://usegalaxy.eu/published/workflow?id=342a5df69951e3d7, https://usegalaxy.eu/published/workflow?id=379642036b6f5a66, https://usegalaxy.eu/published/workflow?id=39b195a36408277c, https://usegalaxy.eu/published/workflow?id=3a3e2d50fe7a9ee3, https://usegalaxy.eu/published/workflow?id=3b8ef7905c902b27, https://usegalaxy.eu/published/workflow?id=3ce75b5de4922cba, https://usegalaxy.eu/published/workflow?id=3e255a5b7026d26e, https://usegalaxy.eu/published/workflow?id=3eb6663a66f8e69a, https://usegalaxy.eu/published/workflow?id=3f5414bb38b47fcf, https://usegalaxy.eu/published/workflow?id=406e6ef0dfb38628, https://usegalaxy.eu/published/workflow?id=409336bf210033a2, https://usegalaxy.eu/published/workflow?id=416141b245073406, https://usegalaxy.eu/published/workflow?id=4176b9d43325a8d8, https://usegalaxy.eu/published/workflow?id=44a2b6c8ae54eb31, https://usegalaxy.eu/published/workflow?id=44c5999436da5f1e, https://usegalaxy.eu/published/workflow?id=45f63151bf4f1a49, https://usegalaxy.eu/published/workflow?id=471eb8b4c54f897d, https://usegalaxy.eu/published/workflow?id=475ea16f943cc013, https://usegalaxy.eu/published/workflow?id=478190607a114390, https://usegalaxy.eu/published/workflow?id=4856e3522b2ee059, https://usegalaxy.eu/published/workflow?id=48f63ef14a12f306, https://usegalaxy.eu/published/workflow?id=497b82d3b92dc076, https://usegalaxy.eu/published/workflow?id=4a51e616d96338ed, https://usegalaxy.eu/published/workflow?id=4c3a9b574f37eebb, https://usegalaxy.eu/published/workflow?id=4d32b1b3ac0a7161, https://usegalaxy.eu/published/workflow?id=4d41ee83fc0040d4, https://usegalaxy.eu/published/workflow?id=4daa0c33d6d50379, https://usegalaxy.eu/published/workflow?id=503a2f4caacaf63e, https://usegalaxy.eu/published/workflow?id=5115299e77df8104, https://usegalaxy.eu/published/workflow?id=5138874b208adb4b, https://usegalaxy.eu/published/workflow?id=519e0ffdfd1790bc, https://usegalaxy.eu/published/workflow?id=5279af5c95ae4f7a, https://usegalaxy.eu/published/workflow?id=54590ccd11ffbf65, https://usegalaxy.eu/published/workflow?id=54b91dd86f463391, https://usegalaxy.eu/published/workflow?id=55ead91471bf1008, https://usegalaxy.eu/published/workflow?id=57cc33ed64d71982, https://usegalaxy.eu/published/workflow?id=5ad406442ec21345, https://usegalaxy.eu/published/workflow?id=5e1906290f5b4d8a, https://usegalaxy.eu/published/workflow?id=5f0faac42b0a5062, https://usegalaxy.eu/published/workflow?id=6514e610c79df72c, https://usegalaxy.eu/published/workflow?id=6573f3b1606b7f09, https://usegalaxy.eu/published/workflow?id=66834f10c86362b9, https://usegalaxy.eu/published/workflow?id=67be21795d403ca3, https://usegalaxy.eu/published/workflow?id=69cdd404592535ec, https://usegalaxy.eu/published/workflow?id=6ebd09100fc98878, https://usegalaxy.eu/published/workflow?id=71a6d128a09210f0, https://usegalaxy.eu/published/workflow?id=7337d15d121596da, https://usegalaxy.eu/published/workflow?id=74e4a8f2edb25f1a, https://usegalaxy.eu/published/workflow?id=77d2adf5249eb826, https://usegalaxy.eu/published/workflow?id=79b5afb125e3c3da, https://usegalaxy.eu/published/workflow?id=79fd2517af48c594, https://usegalaxy.eu/published/workflow?id=7ab70660e6235cf0, https://usegalaxy.eu/published/workflow?id=7d84b0419296857d, https://usegalaxy.eu/published/workflow?id=7e0ba4c14803448e, https://usegalaxy.eu/published/workflow?id=8132c3b710fd6d48, https://usegalaxy.eu/published/workflow?id=830eb4faff21eb0c, https://usegalaxy.eu/published/workflow?id=847403b72dd346ff, https://usegalaxy.eu/published/workflow?id=86e2e2faa2e0bd46, https://usegalaxy.eu/published/workflow?id=873e6ac4699ed7f6, https://usegalaxy.eu/published/workflow?id=87cc0cd143a12c41, https://usegalaxy.eu/published/workflow?id=8b1e2fe9f4a07de0, https://usegalaxy.eu/published/workflow?id=8be366ad6a42408b, https://usegalaxy.eu/published/workflow?id=8fb156020285e049, https://usegalaxy.eu/published/workflow?id=92760fc19ef120ce, https://usegalaxy.eu/published/workflow?id=92dafb3d1c06e074, https://usegalaxy.eu/published/workflow?id=93a7047396080fda, https://usegalaxy.eu/published/workflow?id=9472be79da012999, https://usegalaxy.eu/published/workflow?id=94b9287365ea4d0d, https://usegalaxy.eu/published/workflow?id=95f420d8856bf725, https://usegalaxy.eu/published/workflow?id=985044b4b2c51425, https://usegalaxy.eu/published/workflow?id=994e5ff1df7d6c9e, https://usegalaxy.eu/published/workflow?id=9ad5aff92e185907, https://usegalaxy.eu/published/workflow?id=9c0b67496dfe52b2, https://usegalaxy.eu/published/workflow?id=9c24df68dc7d25a4, https://usegalaxy.eu/published/workflow?id=9c7a218993788493, https://usegalaxy.eu/published/workflow?id=9da26c5131603b9f, https://usegalaxy.eu/published/workflow?id=9e03cf8cd5e5de08, https://usegalaxy.eu/published/workflow?id=9f2d18f0d0896e8b, https://usegalaxy.eu/published/workflow?id=a1e09c648d8f1fc7, https://usegalaxy.eu/published/workflow?id=a28c207730e7e13d, https://usegalaxy.eu/published/workflow?id=a3da32b6b45da639, https://usegalaxy.eu/published/workflow?id=a461ea397418f3aa, https://usegalaxy.eu/published/workflow?id=a6dd62ab4b9a0725, https://usegalaxy.eu/published/workflow?id=a76629eccfdeafb8, https://usegalaxy.eu/published/workflow?id=a8f829deb69b30ab, https://usegalaxy.eu/published/workflow?id=aa6dc57f5c67fb4b, https://usegalaxy.eu/published/workflow?id=ac6eb99f70d35999, https://usegalaxy.eu/published/workflow?id=ae74f60cd20d56bc, https://usegalaxy.eu/published/workflow?id=b211fceaecf41c9e, https://usegalaxy.eu/published/workflow?id=b323867a9efcc6c6, https://usegalaxy.eu/published/workflow?id=b4948afacccfefdb, https://usegalaxy.eu/published/workflow?id=b5e3360f933d1950, https://usegalaxy.eu/published/workflow?id=b619339f4e1c6fdf, https://usegalaxy.eu/published/workflow?id=b84fd6a0e2632ad9, https://usegalaxy.eu/published/workflow?id=b8baade87e733fce, https://usegalaxy.eu/published/workflow?id=b9ad204395f7d931, https://usegalaxy.eu/published/workflow?id=bace9aebab9d4ce3, https://usegalaxy.eu/published/workflow?id=bc87309a8763d0b4, https://usegalaxy.eu/published/workflow?id=bcf99cc0469db276, https://usegalaxy.eu/published/workflow?id=bef0a7d604f2ebef, https://usegalaxy.eu/published/workflow?id=c0d1e965daf89006, https://usegalaxy.eu/published/workflow?id=c2d814f2182c0082, https://usegalaxy.eu/published/workflow?id=c3eba26c5d7febff, https://usegalaxy.eu/published/workflow?id=c4c2e669b86cffbc, https://usegalaxy.eu/published/workflow?id=c4fa05e209a2f082, https://usegalaxy.eu/published/workflow?id=c508c00e81018dd8, https://usegalaxy.eu/published/workflow?id=c6ca9e6fd28979f8, https://usegalaxy.eu/published/workflow?id=c7a8f7aabc219831, https://usegalaxy.eu/published/workflow?id=c7f34c67c9054234, https://usegalaxy.eu/published/workflow?id=c98a14fcf5998159, https://usegalaxy.eu/published/workflow?id=c9aff55e39e195e3, https://usegalaxy.eu/published/workflow?id=caba6d3d7db648e9, https://usegalaxy.eu/published/workflow?id=cc37667c2d1f9056, https://usegalaxy.eu/published/workflow?id=ccef778cfd9024d1, https://usegalaxy.eu/published/workflow?id=ce5c16ac23c4fbb1, https://usegalaxy.eu/published/workflow?id=cfe47f0c78ed5ec4, https://usegalaxy.eu/published/workflow?id=d05c6f0f3205fbd2, https://usegalaxy.eu/published/workflow?id=d12617d0df5f81d0, https://usegalaxy.eu/published/workflow?id=d3494c6124f820b2, https://usegalaxy.eu/published/workflow?id=d3edc3f0659a5e5b, https://usegalaxy.eu/published/workflow?id=d41b52a15ba56f54, https://usegalaxy.eu/published/workflow?id=d67299c34e63f3d9, https://usegalaxy.eu/published/workflow?id=d6809603f46de1b3, https://usegalaxy.eu/published/workflow?id=d768c0e0df4d432e, https://usegalaxy.eu/published/workflow?id=d83280cd72ec0f33, https://usegalaxy.eu/published/workflow?id=dc27453c438577f6, https://usegalaxy.eu/published/workflow?id=de9003e589631029, https://usegalaxy.eu/published/workflow?id=de9cf573314f416c, https://usegalaxy.eu/published/workflow?id=df3bf1700d3faefc, https://usegalaxy.eu/published/workflow?id=dfc2c53ac3103eff, https://usegalaxy.eu/published/workflow?id=e138640778b7414c, https://usegalaxy.eu/published/workflow?id=e7aebe58411d97ed, https://usegalaxy.eu/published/workflow?id=e8eb80ee09159bac, https://usegalaxy.eu/published/workflow?id=e8f9e1d911683b22, https://usegalaxy.eu/published/workflow?id=e935d2c8ffb52588, https://usegalaxy.eu/published/workflow?id=ead0f264798f9418, https://usegalaxy.eu/published/workflow?id=ebbf5cfa946d11d3, https://usegalaxy.eu/published/workflow?id=ec79f14ab91cd933, https://usegalaxy.eu/published/workflow?id=ef1d11b79a2e1727, https://usegalaxy.eu/published/workflow?id=f14ebad1c3c20067, https://usegalaxy.eu/published/workflow?id=f1ca4289ee4f67bb, https://usegalaxy.eu/published/workflow?id=f33b5135ee99e0dc, https://usegalaxy.eu/published/workflow?id=f38745208494d4ab, https://usegalaxy.eu/published/workflow?id=f5005e80d9ffa109, https://usegalaxy.eu/published/workflow?id=f578a097b4339025, https://usegalaxy.eu/published/workflow?id=f5be5bcf9b9f171c, https://usegalaxy.eu/published/workflow?id=f6a625946dea60fa, https://usegalaxy.eu/published/workflow?id=f6b55599db1ab056, https://usegalaxy.eu/published/workflow?id=f6e8a63283262518, https://usegalaxy.eu/published/workflow?id=fa0ff9a0db8bbddb, https://usegalaxy.eu/published/workflow?id=fa53b172def3fe75, https://usegalaxy.eu/published/workflow?id=fb015e398373ea8a, https://usegalaxy.eu/published/workflow?id=fba1671d835b6dd3, https://usegalaxy.eu/published/workflow?id=fc25c1f8c6667c87, https://usegalaxy.eu/published/workflow?id=fd6429a788660c8d, https://usegalaxy.eu/published/workflow?id=fd649ac4d4872c81, https://usegalaxy.eu/published/workflow?id=fdca6c9d394986bf, https://usegalaxy.eu/published/workflow?id=ff4d5beb6ce1809d, https://usegalaxy.fr/published/workflow?id=5d83e0886f2a7465, https://usegalaxy.fr/published/workflow?id=826cffb2458e4067, https://usegalaxy.fr/published/workflow?id=b5d86d505c09d170, https://usegalaxy.fr/published/workflow?id=c4f6062e51d0f45e, https://usegalaxy.fr/published/workflow?id=e6991d64e851b09e, https://usegalaxy.org.au/published/workflow?id=000cdc969e9f0886, https://usegalaxy.org.au/published/workflow?id=01997cb92a2ce2d5, https://usegalaxy.org.au/published/workflow?id=0220e60c66de9065, https://usegalaxy.org.au/published/workflow?id=02b8d033d9b1fa05, https://usegalaxy.org.au/published/workflow?id=02eebe3d909206ab, https://usegalaxy.org.au/published/workflow?id=046a1c600a6b77c2, https://usegalaxy.org.au/published/workflow?id=05b17b9d70c1db8b, https://usegalaxy.org.au/published/workflow?id=0614f24ebeb680de, https://usegalaxy.org.au/published/workflow?id=068f85b8b137bfd7, https://usegalaxy.org.au/published/workflow?id=07c97b9e59c0218f, https://usegalaxy.org.au/published/workflow?id=08fac3b4c128e597, https://usegalaxy.org.au/published/workflow?id=0af0ea50f1237952, https://usegalaxy.org.au/published/workflow?id=0c567180448d8774, https://usegalaxy.org.au/published/workflow?id=0cc8c8875df6bccb, https://usegalaxy.org.au/published/workflow?id=0cfc1408fd9ea4e7, https://usegalaxy.org.au/published/workflow?id=0d1db28665d19bda, https://usegalaxy.org.au/published/workflow?id=0f7406ada6706c91, https://usegalaxy.org.au/published/workflow?id=10355b2680374a03, https://usegalaxy.org.au/published/workflow?id=10acf4f497172400, https://usegalaxy.org.au/published/workflow?id=114fb9589bb9db92, https://usegalaxy.org.au/published/workflow?id=115151c2c8998d44, https://usegalaxy.org.au/published/workflow?id=126116a92f2e9a68, https://usegalaxy.org.au/published/workflow?id=14b17f17d03c8424, https://usegalaxy.org.au/published/workflow?id=158b5d9107a05d95, https://usegalaxy.org.au/published/workflow?id=16f4846b4d6bc155, https://usegalaxy.org.au/published/workflow?id=178db14511c8f293, https://usegalaxy.org.au/published/workflow?id=18d48f1b26811372, https://usegalaxy.org.au/published/workflow?id=19315e6573c58239, https://usegalaxy.org.au/published/workflow?id=1a107e6611fb9c15, https://usegalaxy.org.au/published/workflow?id=1ab66d382630afa7, https://usegalaxy.org.au/published/workflow?id=1ad81f95ace878ea, https://usegalaxy.org.au/published/workflow?id=1c886f008a36b0b8, https://usegalaxy.org.au/published/workflow?id=1eb3e1452c672480, https://usegalaxy.org.au/published/workflow?id=1f63ec596e578b1c, https://usegalaxy.org.au/published/workflow?id=1ff259845498b818, https://usegalaxy.org.au/published/workflow?id=20e5e6b233ffb951, https://usegalaxy.org.au/published/workflow?id=210ca013cc1cf185, https://usegalaxy.org.au/published/workflow?id=2470cb61ba51288c, https://usegalaxy.org.au/published/workflow?id=2543e425fa6d5144, https://usegalaxy.org.au/published/workflow?id=25ac9b4f2e39af97, https://usegalaxy.org.au/published/workflow?id=25f65a29ce3c3ee0, https://usegalaxy.org.au/published/workflow?id=2617fee24459e680, https://usegalaxy.org.au/published/workflow?id=2789fb3590727342, https://usegalaxy.org.au/published/workflow?id=2980172ed0226b59, https://usegalaxy.org.au/published/workflow?id=2999a1891ffe201b, https://usegalaxy.org.au/published/workflow?id=2a0046582f5f15a1, https://usegalaxy.org.au/published/workflow?id=2afeae1ec03c0b57, https://usegalaxy.org.au/published/workflow?id=2c58509f80897972, https://usegalaxy.org.au/published/workflow?id=2cef9a1633e0a067, https://usegalaxy.org.au/published/workflow?id=2d45d7138d8715b4, https://usegalaxy.org.au/published/workflow?id=2f520cb446adf726, https://usegalaxy.org.au/published/workflow?id=2f7c0e3221cbca2f, https://usegalaxy.org.au/published/workflow?id=301fdb29c513ffbe, https://usegalaxy.org.au/published/workflow?id=30b2cd025e0300da, https://usegalaxy.org.au/published/workflow?id=31449596b22f81f4, https://usegalaxy.org.au/published/workflow?id=319e9d693fac8dce, https://usegalaxy.org.au/published/workflow?id=32d28f800adcea42, https://usegalaxy.org.au/published/workflow?id=35384818ee1cbac2, https://usegalaxy.org.au/published/workflow?id=3604307ec2835628, https://usegalaxy.org.au/published/workflow?id=36f54eda8568355d, https://usegalaxy.org.au/published/workflow?id=371c9892d261cee2, https://usegalaxy.org.au/published/workflow?id=374311292d72c9f9, https://usegalaxy.org.au/published/workflow?id=383ce49fa7a367e9, https://usegalaxy.org.au/published/workflow?id=39d56981a6854d82, https://usegalaxy.org.au/published/workflow?id=3bc45aaed5da1058, https://usegalaxy.org.au/published/workflow?id=3c727d5cd349a846, https://usegalaxy.org.au/published/workflow?id=3ce9dc804780e4a1, https://usegalaxy.org.au/published/workflow?id=3df7f45b7b388f8c, https://usegalaxy.org.au/published/workflow?id=3e7fcfd23872ad0d, https://usegalaxy.org.au/published/workflow?id=3ef07022656067b1, https://usegalaxy.org.au/published/workflow?id=40666ceb68d101ac, https://usegalaxy.org.au/published/workflow?id=408a31694e9c85e6, https://usegalaxy.org.au/published/workflow?id=410d0d19b6589c78, https://usegalaxy.org.au/published/workflow?id=41795303a88d9e94, https://usegalaxy.org.au/published/workflow?id=41e005d4ebb5885a, https://usegalaxy.org.au/published/workflow?id=421adea2f259ec26, https://usegalaxy.org.au/published/workflow?id=4267bd1e4cfd1901, https://usegalaxy.org.au/published/workflow?id=434127690544d0e9, https://usegalaxy.org.au/published/workflow?id=43f2dabbc1932e30, https://usegalaxy.org.au/published/workflow?id=45c8789533c45abf, https://usegalaxy.org.au/published/workflow?id=47cacc06d404a8c6, https://usegalaxy.org.au/published/workflow?id=48a25f8e58d068e6, https://usegalaxy.org.au/published/workflow?id=4bd6c5c12fb1a69a, https://usegalaxy.org.au/published/workflow?id=4e096a68187ce652, https://usegalaxy.org.au/published/workflow?id=4efed79608f85604, https://usegalaxy.org.au/published/workflow?id=4f2818b6620037af, https://usegalaxy.org.au/published/workflow?id=4f562265cbb14cd6, https://usegalaxy.org.au/published/workflow?id=51bad198f1fd1215, https://usegalaxy.org.au/published/workflow?id=52056336f24eccf6, https://usegalaxy.org.au/published/workflow?id=525612313de7591e, https://usegalaxy.org.au/published/workflow?id=5314a7a4732a0ef1, https://usegalaxy.org.au/published/workflow?id=544cb12a16f283b8, https://usegalaxy.org.au/published/workflow?id=5550585ffc3d8d0e, https://usegalaxy.org.au/published/workflow?id=56599572e0364e2a, https://usegalaxy.org.au/published/workflow?id=56bda8e4b0018e03, https://usegalaxy.org.au/published/workflow?id=57b558e1a76c09e1, https://usegalaxy.org.au/published/workflow?id=5a4e49ef8693d7c4, https://usegalaxy.org.au/published/workflow?id=5b0c0e34394afed1, https://usegalaxy.org.au/published/workflow?id=5be983b903469f07, https://usegalaxy.org.au/published/workflow?id=5cbee52cf03b6f9a, https://usegalaxy.org.au/published/workflow?id=5cd9b9338e75f254, https://usegalaxy.org.au/published/workflow?id=5ce00d3eab862f4e, https://usegalaxy.org.au/published/workflow?id=5d6773ed5b2f41cb, https://usegalaxy.org.au/published/workflow?id=5ea74382fb77eb10, https://usegalaxy.org.au/published/workflow?id=5f4f874e49515555, https://usegalaxy.org.au/published/workflow?id=608f3ad8f485e7a8, https://usegalaxy.org.au/published/workflow?id=60c0dec52cdca708, https://usegalaxy.org.au/published/workflow?id=6204bbcfe56931eb, https://usegalaxy.org.au/published/workflow?id=625f3c52832b0591, https://usegalaxy.org.au/published/workflow?id=63789b6f82172679, https://usegalaxy.org.au/published/workflow?id=6448b82959076a29, https://usegalaxy.org.au/published/workflow?id=6469ade8f6f7c718, https://usegalaxy.org.au/published/workflow?id=67191ea9fe977e08, https://usegalaxy.org.au/published/workflow?id=677ef3322366c953, https://usegalaxy.org.au/published/workflow?id=68b2961117e62890, https://usegalaxy.org.au/published/workflow?id=69233fb6edfcdde9, https://usegalaxy.org.au/published/workflow?id=6b2716309947836d, https://usegalaxy.org.au/published/workflow?id=6b34c95a247d15e3, https://usegalaxy.org.au/published/workflow?id=6b3df543536faf8c, https://usegalaxy.org.au/published/workflow?id=6c1c11a81a2ab1b8, https://usegalaxy.org.au/published/workflow?id=6c27019d03dd49d8, https://usegalaxy.org.au/published/workflow?id=6c9129acb9d98afe, https://usegalaxy.org.au/published/workflow?id=6cdbcd1f667d0f16, https://usegalaxy.org.au/published/workflow?id=6efcacf14bfc18b3, https://usegalaxy.org.au/published/workflow?id=6f0801fecbba5d3f, https://usegalaxy.org.au/published/workflow?id=71bad95f72c9f30d, https://usegalaxy.org.au/published/workflow?id=723513b09d6690b8, https://usegalaxy.org.au/published/workflow?id=73ff1aa9acc0ad2a, https://usegalaxy.org.au/published/workflow?id=74186b006665daf8, https://usegalaxy.org.au/published/workflow?id=75113a1b41904d2a, https://usegalaxy.org.au/published/workflow?id=754149375c3069c4, https://usegalaxy.org.au/published/workflow?id=76323f103844f75b, https://usegalaxy.org.au/published/workflow?id=79522a1f7b0c53cb, https://usegalaxy.org.au/published/workflow?id=79ca45e45d76871f, https://usegalaxy.org.au/published/workflow?id=7a4ee63a04362967, https://usegalaxy.org.au/published/workflow?id=7ad9410e36ee9ea1, https://usegalaxy.org.au/published/workflow?id=7b203d52f496e2c7, https://usegalaxy.org.au/published/workflow?id=7ba13e928de65e61, https://usegalaxy.org.au/published/workflow?id=7becafd394472dfb, https://usegalaxy.org.au/published/workflow?id=7c2e7b292803b3e9, https://usegalaxy.org.au/published/workflow?id=7c866ed4a3552d0d, https://usegalaxy.org.au/published/workflow?id=7d268e7209a68e2e, https://usegalaxy.org.au/published/workflow?id=7ea616c652d08fb6, https://usegalaxy.org.au/published/workflow?id=7ef245f5ae3b916d, https://usegalaxy.org.au/published/workflow?id=7febc6ac6f106e57, https://usegalaxy.org.au/published/workflow?id=83680c1c6dffb05b, https://usegalaxy.org.au/published/workflow?id=83a535840b388980, https://usegalaxy.org.au/published/workflow?id=8433a2f79b2e5894, https://usegalaxy.org.au/published/workflow?id=8483ae422665a6c1, https://usegalaxy.org.au/published/workflow?id=8483e8d3e8d0ddc9, https://usegalaxy.org.au/published/workflow?id=8597166abda0a375, https://usegalaxy.org.au/published/workflow?id=85aede91db0122e4, https://usegalaxy.org.au/published/workflow?id=863eee1b041b6c58, https://usegalaxy.org.au/published/workflow?id=879d4fb110a61f7a, https://usegalaxy.org.au/published/workflow?id=88c0d875eea2ee49, https://usegalaxy.org.au/published/workflow?id=8926e592f2e60863, https://usegalaxy.org.au/published/workflow?id=897dfa78c3b25356, https://usegalaxy.org.au/published/workflow?id=897e9d7432d231e9, https://usegalaxy.org.au/published/workflow?id=8a6233015db6dd24, https://usegalaxy.org.au/published/workflow?id=8b8a5b50f2edc72c, https://usegalaxy.org.au/published/workflow?id=8bf8c9929249f37d, https://usegalaxy.org.au/published/workflow?id=8c40b4a911517cc5, https://usegalaxy.org.au/published/workflow?id=8cab31db0bd3ff52, https://usegalaxy.org.au/published/workflow?id=8d196c8c62530dc0, https://usegalaxy.org.au/published/workflow?id=8d47811c6154d347, https://usegalaxy.org.au/published/workflow?id=8d6010d07cc2e170, https://usegalaxy.org.au/published/workflow?id=8d6d4f848067f3d9, https://usegalaxy.org.au/published/workflow?id=8dd86497bc15d981, https://usegalaxy.org.au/published/workflow?id=8e8a5cce9f3f2f67, https://usegalaxy.org.au/published/workflow?id=8fb691706f47527a, https://usegalaxy.org.au/published/workflow?id=8fe84de499e96485, https://usegalaxy.org.au/published/workflow?id=91cfd96f697ba034, https://usegalaxy.org.au/published/workflow?id=91ee716be8bfd508, https://usegalaxy.org.au/published/workflow?id=925c167abd5610ae, https://usegalaxy.org.au/published/workflow?id=94c7fdcbbc7b428a, https://usegalaxy.org.au/published/workflow?id=95a9070469a895c3, https://usegalaxy.org.au/published/workflow?id=95efb414f5984735, https://usegalaxy.org.au/published/workflow?id=9642aadb83c4f752, https://usegalaxy.org.au/published/workflow?id=970dc0d8bd74707f, https://usegalaxy.org.au/published/workflow?id=975ddb0eb436f1fd, https://usegalaxy.org.au/published/workflow?id=97628b0604d5ec77, https://usegalaxy.org.au/published/workflow?id=9787c8b7adeedb0c, https://usegalaxy.org.au/published/workflow?id=978953f492b2b914, https://usegalaxy.org.au/published/workflow?id=9804030358c3f844, https://usegalaxy.org.au/published/workflow?id=981d7b02416b7734, https://usegalaxy.org.au/published/workflow?id=9898348d95033af2, https://usegalaxy.org.au/published/workflow?id=98d3def7da131b4c, https://usegalaxy.org.au/published/workflow?id=98f660971010d11d, https://usegalaxy.org.au/published/workflow?id=99821674db7682bb, https://usegalaxy.org.au/published/workflow?id=9988bc2402f32dc1, https://usegalaxy.org.au/published/workflow?id=9b18123afbe1264b, https://usegalaxy.org.au/published/workflow?id=9b1afa59c087eacd, https://usegalaxy.org.au/published/workflow?id=9bc31dff5bcec42b, https://usegalaxy.org.au/published/workflow?id=9df67170c9260539, https://usegalaxy.org.au/published/workflow?id=9e0bae0505ee7c07, https://usegalaxy.org.au/published/workflow?id=9e8d9b7055b7c863, https://usegalaxy.org.au/published/workflow?id=9ec9fe2715d7cfdc, https://usegalaxy.org.au/published/workflow?id=a02c102e179596cb, https://usegalaxy.org.au/published/workflow?id=a345bf84eb9bf6b2, https://usegalaxy.org.au/published/workflow?id=a484cdc9ff9d7e9e, https://usegalaxy.org.au/published/workflow?id=a525966251895f8a, https://usegalaxy.org.au/published/workflow?id=a5ccbb9aced9ac53, https://usegalaxy.org.au/published/workflow?id=a69db7f914c06407, https://usegalaxy.org.au/published/workflow?id=a7346c25dfdf2e3e, https://usegalaxy.org.au/published/workflow?id=a763e53653b10ce0, https://usegalaxy.org.au/published/workflow?id=a7726d18d2a5fcf2, https://usegalaxy.org.au/published/workflow?id=a7a30d970584f9ac, https://usegalaxy.org.au/published/workflow?id=a7d1cf2bb636e695, https://usegalaxy.org.au/published/workflow?id=a820d57cc8300253, https://usegalaxy.org.au/published/workflow?id=a8ec08a1408cd6e7, https://usegalaxy.org.au/published/workflow?id=a9fa6101f1fb13e2, https://usegalaxy.org.au/published/workflow?id=aa94c77b720a2810, https://usegalaxy.org.au/published/workflow?id=aaaf580eb00459b6, https://usegalaxy.org.au/published/workflow?id=aae07f802002fdd0, https://usegalaxy.org.au/published/workflow?id=ad10cd704268dcf0, https://usegalaxy.org.au/published/workflow?id=ad13b4a61e8987b1, https://usegalaxy.org.au/published/workflow?id=ae5dca8108d1a8a6, https://usegalaxy.org.au/published/workflow?id=ae6892f1df022097, https://usegalaxy.org.au/published/workflow?id=ae773dfaa074cb72, https://usegalaxy.org.au/published/workflow?id=aed93da6fd6e4e13, https://usegalaxy.org.au/published/workflow?id=af3f40cba4d7afa6, https://usegalaxy.org.au/published/workflow?id=af7b95f46485308c, https://usegalaxy.org.au/published/workflow?id=af990cca72794142, https://usegalaxy.org.au/published/workflow?id=afab89bc468da8b3, https://usegalaxy.org.au/published/workflow?id=afd9a8bbc07f9c3f, https://usegalaxy.org.au/published/workflow?id=b191da6e594747fb, https://usegalaxy.org.au/published/workflow?id=b19fa49405117317, https://usegalaxy.org.au/published/workflow?id=b1f45d2f8d8343e9, https://usegalaxy.org.au/published/workflow?id=b20f28151e46d3e0, https://usegalaxy.org.au/published/workflow?id=b5131e3a0ef2676e, https://usegalaxy.org.au/published/workflow?id=b57bf134896c30ea, https://usegalaxy.org.au/published/workflow?id=b6db525b1b73394b, https://usegalaxy.org.au/published/workflow?id=b7226d37b25df833, https://usegalaxy.org.au/published/workflow?id=b8968fb0bf796e53, https://usegalaxy.org.au/published/workflow?id=b8c661ff6b79383b, https://usegalaxy.org.au/published/workflow?id=b9faf6a3f48fc11b, https://usegalaxy.org.au/published/workflow?id=bb0feff5d764df60, https://usegalaxy.org.au/published/workflow?id=bd251174d94cde9d, https://usegalaxy.org.au/published/workflow?id=bda98c5a0ea70dd0, https://usegalaxy.org.au/published/workflow?id=be96bb47b6d6435a, https://usegalaxy.org.au/published/workflow?id=c1a0a3888d9ee3ac, https://usegalaxy.org.au/published/workflow?id=c296b3848708f6f1, https://usegalaxy.org.au/published/workflow?id=c2dee690320f9845, https://usegalaxy.org.au/published/workflow?id=c2e5a43356042b30, https://usegalaxy.org.au/published/workflow?id=c3b3717502ff6f76, https://usegalaxy.org.au/published/workflow?id=c3bb21f20a3ce689, https://usegalaxy.org.au/published/workflow?id=c3e198bc2146b4ad, https://usegalaxy.org.au/published/workflow?id=c65a5af6c0383f8c, https://usegalaxy.org.au/published/workflow?id=c6a71573a299eb3a, https://usegalaxy.org.au/published/workflow?id=c7e1f666a3366823, https://usegalaxy.org.au/published/workflow?id=c7f2d6490128dc3c, https://usegalaxy.org.au/published/workflow?id=c87c1f8c4eff415a, https://usegalaxy.org.au/published/workflow?id=cb960edf95d2dc35, https://usegalaxy.org.au/published/workflow?id=ccc6602623583bcc, https://usegalaxy.org.au/published/workflow?id=ce7106593536f900, https://usegalaxy.org.au/published/workflow?id=ce7f6a1c824920e2, https://usegalaxy.org.au/published/workflow?id=cef68481b305a516, https://usegalaxy.org.au/published/workflow?id=d126940d33e63036, https://usegalaxy.org.au/published/workflow?id=d298edda13b382e7, https://usegalaxy.org.au/published/workflow?id=d42d7b1aa47e870f, https://usegalaxy.org.au/published/workflow?id=d5ecfdbc04b24227, https://usegalaxy.org.au/published/workflow?id=d7a65f577fe5f16b, https://usegalaxy.org.au/published/workflow?id=d7f3fc810261e419, https://usegalaxy.org.au/published/workflow?id=d8ee4c7ef846e30f, https://usegalaxy.org.au/published/workflow?id=d9c181fd954b629a, https://usegalaxy.org.au/published/workflow?id=db0bc7357c181222, https://usegalaxy.org.au/published/workflow?id=db3370a412c4de78, https://usegalaxy.org.au/published/workflow?id=dccc8fb49d61ac33, https://usegalaxy.org.au/published/workflow?id=dce29c35dfac48b1, https://usegalaxy.org.au/published/workflow?id=dd6f465ab1eb10b0, https://usegalaxy.org.au/published/workflow?id=de1c04a2caf70647, https://usegalaxy.org.au/published/workflow?id=df4e186069552649, https://usegalaxy.org.au/published/workflow?id=e031af90daa2cadf, https://usegalaxy.org.au/published/workflow?id=e08b04291839e79a, https://usegalaxy.org.au/published/workflow?id=e08ef6b519f5fba0, https://usegalaxy.org.au/published/workflow?id=e0b89b4e50d1a99b, https://usegalaxy.org.au/published/workflow?id=e1fd89e7248b6661, https://usegalaxy.org.au/published/workflow?id=e28ca83f14f4ede5, https://usegalaxy.org.au/published/workflow?id=e3cda847fe727b61, https://usegalaxy.org.au/published/workflow?id=e52a3479c8216291, https://usegalaxy.org.au/published/workflow?id=e57c6d05b560e206, https://usegalaxy.org.au/published/workflow?id=e62f743342851151, https://usegalaxy.org.au/published/workflow?id=e826584d78b69467, https://usegalaxy.org.au/published/workflow?id=e92b4d8dfa2f1cf7, https://usegalaxy.org.au/published/workflow?id=ea687c5613fcce27, https://usegalaxy.org.au/published/workflow?id=eaa841e6b7384633, https://usegalaxy.org.au/published/workflow?id=eb3a4535204383fa, https://usegalaxy.org.au/published/workflow?id=ec79c2fab8eac15d, https://usegalaxy.org.au/published/workflow?id=ed2f72e3537e8a4a, https://usegalaxy.org.au/published/workflow?id=efd39a4be0a9a4e6, https://usegalaxy.org.au/published/workflow?id=f0ced9a5d34b2aff, https://usegalaxy.org.au/published/workflow?id=f268c181a47d0cab, https://usegalaxy.org.au/published/workflow?id=f5c0b0bc5e023e42, https://usegalaxy.org.au/published/workflow?id=f7a866159f1eaecf, https://usegalaxy.org.au/published/workflow?id=f944f2d3fbd1f062, https://usegalaxy.org.au/published/workflow?id=fa37223950a91f34, https://usegalaxy.org.au/published/workflow?id=fa4fa7353dffef9a, https://usegalaxy.org.au/published/workflow?id=fa87a22c8dcd8d78, https://usegalaxy.org.au/published/workflow?id=fb644a9649f36f40, https://usegalaxy.org.au/published/workflow?id=fc64a77321752a3c, https://usegalaxy.org.au/published/workflow?id=fc6f8afdee980f0e, https://usegalaxy.org.au/published/workflow?id=fd1b3d7f2d34ff09, https://usegalaxy.org.au/published/workflow?id=fd477917a3d27f61, https://usegalaxy.org.au/published/workflow?id=fd8fb237f8dc24c3, https://usegalaxy.org.au/published/workflow?id=fe1de81a97578368, https://usegalaxy.org.au/published/workflow?id=fe1e7fa0bc437ed8, https://usegalaxy.org.au/published/workflow?id=fe893d72526eba71, https://usegalaxy.org.au/published/workflow?id=ff42213dda7d3e59, https://usegalaxy.org.au/published/workflow?id=fff2e49bc90e38ca, https://usegalaxy.org/published/workflow?id=00bc4e99626da1ba, https://usegalaxy.org/published/workflow?id=028f1beead539975, https://usegalaxy.org/published/workflow?id=02e29499b946f3bb, https://usegalaxy.org/published/workflow?id=044c5ce43f2e1829, https://usegalaxy.org/published/workflow?id=052ba366e32132ec, https://usegalaxy.org/published/workflow?id=05e86b4df0d14800, https://usegalaxy.org/published/workflow?id=063173d36c254105, https://usegalaxy.org/published/workflow?id=06b489dc859f6e39, https://usegalaxy.org/published/workflow?id=06f3ca70b542556e, https://usegalaxy.org/published/workflow?id=07dca0dc191fb1de, https://usegalaxy.org/published/workflow?id=07e4414905458c86, https://usegalaxy.org/published/workflow?id=07e873a6d75dfe9f, https://usegalaxy.org/published/workflow?id=08da44d18689dffc, https://usegalaxy.org/published/workflow?id=08edef22fa132799, https://usegalaxy.org/published/workflow?id=091f788edad78956, https://usegalaxy.org/published/workflow?id=098fd236c5e2895d, https://usegalaxy.org/published/workflow?id=0993daadf2db5f51, https://usegalaxy.org/published/workflow?id=0d47009eb2d7bdc1, https://usegalaxy.org/published/workflow?id=0ebb1f5b6c9c8ab9, https://usegalaxy.org/published/workflow?id=1010a9b57c77239c, https://usegalaxy.org/published/workflow?id=10c5f3c5cadd7417, https://usegalaxy.org/published/workflow?id=1234a128adc25b03, https://usegalaxy.org/published/workflow?id=1245e9435cbc3985, https://usegalaxy.org/published/workflow?id=1250ec3ad6199cda, https://usegalaxy.org/published/workflow?id=12a52ae52e0f1053, https://usegalaxy.org/published/workflow?id=137d0f05a71d7acb, https://usegalaxy.org/published/workflow?id=13a1fa4f6daf65cc, https://usegalaxy.org/published/workflow?id=148c071f5c5a4586, https://usegalaxy.org/published/workflow?id=150e288c2c2fe9e9, https://usegalaxy.org/published/workflow?id=156e245e3d9f22ce, https://usegalaxy.org/published/workflow?id=15ea806eaf077617, https://usegalaxy.org/published/workflow?id=162fda90525220de, https://usegalaxy.org/published/workflow?id=172ee5e5bef33d2e, https://usegalaxy.org/published/workflow?id=17f3d7e52777d2e8, https://usegalaxy.org/published/workflow?id=1829c91a30138721, https://usegalaxy.org/published/workflow?id=19c1ba21e82d8615, https://usegalaxy.org/published/workflow?id=1a23d8c795846251, https://usegalaxy.org/published/workflow?id=1cad9a0b375ed3d1, https://usegalaxy.org/published/workflow?id=1cbd946c4cc0e7b9, https://usegalaxy.org/published/workflow?id=1d24cc949c52e475, https://usegalaxy.org/published/workflow?id=1d56a0975fca0e99, https://usegalaxy.org/published/workflow?id=1d69ab87c94d68fd, https://usegalaxy.org/published/workflow?id=1d8227ad3f3651a0, https://usegalaxy.org/published/workflow?id=1dd63a7b4c6f4c83, https://usegalaxy.org/published/workflow?id=1e0a55635f5b04cf, https://usegalaxy.org/published/workflow?id=1e1d7fac7e241768, https://usegalaxy.org/published/workflow?id=1eec2586d1ff908b, https://usegalaxy.org/published/workflow?id=1f00e44f590b8369, https://usegalaxy.org/published/workflow?id=1f28e673ea725541, https://usegalaxy.org/published/workflow?id=1ffc71df8eeed57e, https://usegalaxy.org/published/workflow?id=2078abc4c99c3344, https://usegalaxy.org/published/workflow?id=20da2dcce0ae2ca2, https://usegalaxy.org/published/workflow?id=25a9f0693ff6d327, https://usegalaxy.org/published/workflow?id=26019c2b056d3a1c, https://usegalaxy.org/published/workflow?id=27ee9da9121d0522, https://usegalaxy.org/published/workflow?id=283bc048cc7a80f5, https://usegalaxy.org/published/workflow?id=284150bb1f296378, https://usegalaxy.org/published/workflow?id=291829fed6fa7c44, https://usegalaxy.org/published/workflow?id=2957924403998f3a, https://usegalaxy.org/published/workflow?id=2b41752b8518a87b, https://usegalaxy.org/published/workflow?id=2b5346b94358df88, https://usegalaxy.org/published/workflow?id=2c5c627c08563398, https://usegalaxy.org/published/workflow?id=2cc5472ad7c039d1, https://usegalaxy.org/published/workflow?id=2d6d74294e911fa3, https://usegalaxy.org/published/workflow?id=2d994cc02ec05ede, https://usegalaxy.org/published/workflow?id=2e029537d2f4ab50, https://usegalaxy.org/published/workflow?id=2e4918ad409f7f4e, https://usegalaxy.org/published/workflow?id=2f4d5f833aa1c981, https://usegalaxy.org/published/workflow?id=2f774500d5bec9a6, https://usegalaxy.org/published/workflow?id=305fb9f84b053713, https://usegalaxy.org/published/workflow?id=30ba39be60ec29be, https://usegalaxy.org/published/workflow?id=313d50268e1e22e4, https://usegalaxy.org/published/workflow?id=31a6145b0832fa48, https://usegalaxy.org/published/workflow?id=3269026bb1e0ec42, https://usegalaxy.org/published/workflow?id=326ced2230a49c26, https://usegalaxy.org/published/workflow?id=32c769241ffce3d1, https://usegalaxy.org/published/workflow?id=336795e890851c21, https://usegalaxy.org/published/workflow?id=33e827d75a0074df, https://usegalaxy.org/published/workflow?id=35c022174ce79c1e, https://usegalaxy.org/published/workflow?id=35c2626849348f2c, https://usegalaxy.org/published/workflow?id=3673a1ced343d0d0, https://usegalaxy.org/published/workflow?id=3823773ef4ecaaf4, https://usegalaxy.org/published/workflow?id=3aa1b79aa6cca06b, https://usegalaxy.org/published/workflow?id=3ab66315f50501f0, https://usegalaxy.org/published/workflow?id=3b2bee20f0cfd957, https://usegalaxy.org/published/workflow?id=3b5437544ca3b5dc, https://usegalaxy.org/published/workflow?id=3ba73f679558017c, https://usegalaxy.org/published/workflow?id=3c076bc8551a23d2, https://usegalaxy.org/published/workflow?id=3c0af11dbeeee506, https://usegalaxy.org/published/workflow?id=3d0ba2f11f370e05, https://usegalaxy.org/published/workflow?id=3db4eb1ecb588d44, https://usegalaxy.org/published/workflow?id=3e57e668cf698d19, https://usegalaxy.org/published/workflow?id=3e6c9ab5ef3250ae, https://usegalaxy.org/published/workflow?id=3f7550d5d2bf0b96, https://usegalaxy.org/published/workflow?id=3f8e0395007c8e9e, https://usegalaxy.org/published/workflow?id=3fc5bdbd6355477c, https://usegalaxy.org/published/workflow?id=408c799822cbf6ea, https://usegalaxy.org/published/workflow?id=424acfc2ded46f9f, https://usegalaxy.org/published/workflow?id=435f0340bf00c940, https://usegalaxy.org/published/workflow?id=442949862ba62462, https://usegalaxy.org/published/workflow?id=444c856f03b6d2a7, https://usegalaxy.org/published/workflow?id=44781c8b0bd667ed, https://usegalaxy.org/published/workflow?id=448a0797f9150198, https://usegalaxy.org/published/workflow?id=45cb3e98b1319c7c, https://usegalaxy.org/published/workflow?id=4612ec88a57ab9e7, https://usegalaxy.org/published/workflow?id=46e718fb8eeb4d54, https://usegalaxy.org/published/workflow?id=472f73c3e81da1d9, https://usegalaxy.org/published/workflow?id=4790266996f12979, https://usegalaxy.org/published/workflow?id=47a2458ee9d57b24, https://usegalaxy.org/published/workflow?id=484f8fcf21d67376, https://usegalaxy.org/published/workflow?id=498a8c6329ca5728, https://usegalaxy.org/published/workflow?id=49c61c378cacfe02, https://usegalaxy.org/published/workflow?id=4a01263e3d4b4edb, https://usegalaxy.org/published/workflow?id=4a0ad87aa5aa558a, https://usegalaxy.org/published/workflow?id=4b7daa3c73c8ef30, https://usegalaxy.org/published/workflow?id=4bf73376661baafd, https://usegalaxy.org/published/workflow?id=4ca8b023f9a33440, https://usegalaxy.org/published/workflow?id=4cc70b699ea8bc63, https://usegalaxy.org/published/workflow?id=506acac8c6a58d5e, https://usegalaxy.org/published/workflow?id=5199f404ad7ecef8, https://usegalaxy.org/published/workflow?id=51d80a44d7d6fff7, https://usegalaxy.org/published/workflow?id=52592de9687fc6de, https://usegalaxy.org/published/workflow?id=527adadecbab2eb6, https://usegalaxy.org/published/workflow?id=52b7524a3941885c, https://usegalaxy.org/published/workflow?id=52bde903adbbaf60, https://usegalaxy.org/published/workflow?id=52e2b69787ca7a17, https://usegalaxy.org/published/workflow?id=533b1d5d08f9943e, https://usegalaxy.org/published/workflow?id=53fdff74729a6780, https://usegalaxy.org/published/workflow?id=553125cd799e5982, https://usegalaxy.org/published/workflow?id=5532e6f775adb0d7, https://usegalaxy.org/published/workflow?id=570172fbcf865e1d, https://usegalaxy.org/published/workflow?id=57e6345fda3e2682, https://usegalaxy.org/published/workflow?id=582f3de3971fc38c, https://usegalaxy.org/published/workflow?id=58a7a02dade085cf, https://usegalaxy.org/published/workflow?id=58eeb06f911e8410, https://usegalaxy.org/published/workflow?id=59007e2bc9c807ee, https://usegalaxy.org/published/workflow?id=5944c5effd56b0d6, https://usegalaxy.org/published/workflow?id=597c4d54f8a8ebe7, https://usegalaxy.org/published/workflow?id=5a16ff38eb80da82, https://usegalaxy.org/published/workflow?id=5a55d9bd9701b1ce, https://usegalaxy.org/published/workflow?id=5b2bb861501fa248, https://usegalaxy.org/published/workflow?id=5b8497a32bf01c4f, https://usegalaxy.org/published/workflow?id=5cb74afcca56a453, https://usegalaxy.org/published/workflow?id=5ccc7d708e13de60, https://usegalaxy.org/published/workflow?id=5d1208bd49f97aeb, https://usegalaxy.org/published/workflow?id=5dd0a672cceb15ec, https://usegalaxy.org/published/workflow?id=5df593510c7d944d, https://usegalaxy.org/published/workflow?id=5dfec2a3ae5fa765, https://usegalaxy.org/published/workflow?id=5e18bbbe9ff2d9f5, https://usegalaxy.org/published/workflow?id=607d1683d6e26cef, https://usegalaxy.org/published/workflow?id=60b9910b7bb69f47, https://usegalaxy.org/published/workflow?id=6229546fb8b0eba9, https://usegalaxy.org/published/workflow?id=62436fe121e035e7, https://usegalaxy.org/published/workflow?id=62c842e67fca5ab7, https://usegalaxy.org/published/workflow?id=62ecc8078a396e9e, https://usegalaxy.org/published/workflow?id=63b3b266bde77563, https://usegalaxy.org/published/workflow?id=63f61ad7cae40646, https://usegalaxy.org/published/workflow?id=642e71c64a975461, https://usegalaxy.org/published/workflow?id=64a329cf75834d6b, https://usegalaxy.org/published/workflow?id=64af2cd469fee16a, https://usegalaxy.org/published/workflow?id=653d553ac2fa51c8, https://usegalaxy.org/published/workflow?id=66e6b41f6c6d52b7, https://usegalaxy.org/published/workflow?id=672125473ec700bc, https://usegalaxy.org/published/workflow?id=676b88d0aac13fa5, https://usegalaxy.org/published/workflow?id=676fa9af68f6a763, https://usegalaxy.org/published/workflow?id=67992bf894a82587, https://usegalaxy.org/published/workflow?id=683e725f672b7d9b, https://usegalaxy.org/published/workflow?id=68495cc8ec3d46df, https://usegalaxy.org/published/workflow?id=69edab5d6ad91556, https://usegalaxy.org/published/workflow?id=6a174e7498434bd5, https://usegalaxy.org/published/workflow?id=6b511b47176893e3, https://usegalaxy.org/published/workflow?id=6c68072bf72e6c4a, https://usegalaxy.org/published/workflow?id=6c95a357a3c1f399, https://usegalaxy.org/published/workflow?id=6d68f56abf9c624d, https://usegalaxy.org/published/workflow?id=6db96a9c7e4b8d14, https://usegalaxy.org/published/workflow?id=6dfe0c6e87c6cb7b, https://usegalaxy.org/published/workflow?id=6e47a35cc5f2bdce, https://usegalaxy.org/published/workflow?id=6ea1bd64873b6c18, https://usegalaxy.org/published/workflow?id=6ec8b101d24a0f4f, https://usegalaxy.org/published/workflow?id=6ecfa8ce19ed86da, https://usegalaxy.org/published/workflow?id=6fa88ca75caba8e4, https://usegalaxy.org/published/workflow?id=7022c4d9af725e5c, https://usegalaxy.org/published/workflow?id=7072731b51e16923, https://usegalaxy.org/published/workflow?id=70f9c7cc75a1d3c0, https://usegalaxy.org/published/workflow?id=716dc497d7d2e1c3, https://usegalaxy.org/published/workflow?id=72d134a60c694b59, https://usegalaxy.org/published/workflow?id=74c98eafd363cc2b, https://usegalaxy.org/published/workflow?id=75324d68ed124ff5, https://usegalaxy.org/published/workflow?id=75e23bc4e1ac2f5b, https://usegalaxy.org/published/workflow?id=75fffbce810acaf3, https://usegalaxy.org/published/workflow?id=761675cb2c9ad2ef, https://usegalaxy.org/published/workflow?id=76b8ed1c68678b62, https://usegalaxy.org/published/workflow?id=76d5143860fac947, https://usegalaxy.org/published/workflow?id=76fb573f1372ae86, https://usegalaxy.org/published/workflow?id=7757cd56fa4d060c, https://usegalaxy.org/published/workflow?id=778a8867b0a6ea4f, https://usegalaxy.org/published/workflow?id=77d1505c0dd65e26, https://usegalaxy.org/published/workflow?id=7832cfdeabe47696, https://usegalaxy.org/published/workflow?id=789647a199e563fd, https://usegalaxy.org/published/workflow?id=7a33bc2d0970b502, https://usegalaxy.org/published/workflow?id=7b9e17cb1d72d7e4, https://usegalaxy.org/published/workflow?id=7b9f36ae2174164a, https://usegalaxy.org/published/workflow?id=7c4a2339b17a8930, https://usegalaxy.org/published/workflow?id=7cee34a6c06c21e4, https://usegalaxy.org/published/workflow?id=7d11026214dd8c93, https://usegalaxy.org/published/workflow?id=7dba74c915f63dc1, https://usegalaxy.org/published/workflow?id=7df3246858cd83d1, https://usegalaxy.org/published/workflow?id=7f6900852a81d121, https://usegalaxy.org/published/workflow?id=7fb4dae5daab0522, https://usegalaxy.org/published/workflow?id=803aec95399f7073, https://usegalaxy.org/published/workflow?id=8095deba606ebd5e, https://usegalaxy.org/published/workflow?id=81f1f0fd6d9235fd, https://usegalaxy.org/published/workflow?id=824730064b5014e5, https://usegalaxy.org/published/workflow?id=842c09b49c456429, https://usegalaxy.org/published/workflow?id=85011076892808e0, https://usegalaxy.org/published/workflow?id=85bc37a59a6ea443, https://usegalaxy.org/published/workflow?id=864da6858d34df08, https://usegalaxy.org/published/workflow?id=868acaf49d0743ec, https://usegalaxy.org/published/workflow?id=8756aabc654b1050, https://usegalaxy.org/published/workflow?id=875ff758068e1c2f, https://usegalaxy.org/published/workflow?id=87756e064ab1e28a, https://usegalaxy.org/published/workflow?id=87c1bdc00b975377, https://usegalaxy.org/published/workflow?id=87d7a69106ca663d, https://usegalaxy.org/published/workflow?id=87eb1a8ee7a2c984, https://usegalaxy.org/published/workflow?id=87fab09e4c592435, https://usegalaxy.org/published/workflow?id=885f0e66fa6b8790, https://usegalaxy.org/published/workflow?id=88e10493f7e6b9d5, https://usegalaxy.org/published/workflow?id=8990ae43ae855bc7, https://usegalaxy.org/published/workflow?id=899f4f371b4c958c, https://usegalaxy.org/published/workflow?id=89f48993bb8f94bd, https://usegalaxy.org/published/workflow?id=89f52c97b3aee938, https://usegalaxy.org/published/workflow?id=8a215695e7b57cf5, https://usegalaxy.org/published/workflow?id=8bf608c6fd0dabd0, https://usegalaxy.org/published/workflow?id=8cbb9936e88d4f49, https://usegalaxy.org/published/workflow?id=8cfbaa14cff5a633, https://usegalaxy.org/published/workflow?id=8d605fbd33003d26, https://usegalaxy.org/published/workflow?id=8e2b2a40831dfb08, https://usegalaxy.org/published/workflow?id=8e509c87d143022c, https://usegalaxy.org/published/workflow?id=8e918c12d2f0d1fc, https://usegalaxy.org/published/workflow?id=8ebcae16a7822d93, https://usegalaxy.org/published/workflow?id=8f392d06d32bdf14, https://usegalaxy.org/published/workflow?id=907aaf55487ddf43, https://usegalaxy.org/published/workflow?id=90ed607bedd65524, https://usegalaxy.org/published/workflow?id=90f5b512997c70f8, https://usegalaxy.org/published/workflow?id=9124c2ec80b35680, https://usegalaxy.org/published/workflow?id=914ec4d8fc0022e4, https://usegalaxy.org/published/workflow?id=917e5a21d51a61ce, https://usegalaxy.org/published/workflow?id=91806144e90637e8, https://usegalaxy.org/published/workflow?id=9255c0c9017b139f, https://usegalaxy.org/published/workflow?id=92aab10842ff610d, https://usegalaxy.org/published/workflow?id=932b3bc10186f73e, https://usegalaxy.org/published/workflow?id=936ed7447c8e0a2d, https://usegalaxy.org/published/workflow?id=9373050c3ce80d56, https://usegalaxy.org/published/workflow?id=93c1fef4472aa7a8, https://usegalaxy.org/published/workflow?id=93cb976bd4ae546e, https://usegalaxy.org/published/workflow?id=93e69c7e7a857ca3, https://usegalaxy.org/published/workflow?id=94ab68d27de2e60f, https://usegalaxy.org/published/workflow?id=961dac8100c6c70c, https://usegalaxy.org/published/workflow?id=96ae2544e22d34c5, https://usegalaxy.org/published/workflow?id=96cdba1fe599ada8, https://usegalaxy.org/published/workflow?id=9763787d7b102f39, https://usegalaxy.org/published/workflow?id=97c20a819394e381, https://usegalaxy.org/published/workflow?id=98a4b90f7fc2bfce, https://usegalaxy.org/published/workflow?id=9938a81fb6911412, https://usegalaxy.org/published/workflow?id=995cc428eace3bc4, https://usegalaxy.org/published/workflow?id=9990b6e2facf6dca, https://usegalaxy.org/published/workflow?id=99ee567c092fb34c, https://usegalaxy.org/published/workflow?id=9b5ae15bb9aaba48, https://usegalaxy.org/published/workflow?id=9c688a2fc8d1bf4e, https://usegalaxy.org/published/workflow?id=9da9ddae8d5dc92f, https://usegalaxy.org/published/workflow?id=9db607d8d1cdcc25, https://usegalaxy.org/published/workflow?id=9ddfdc9d6cacea88, https://usegalaxy.org/published/workflow?id=9ded318097694dbc, https://usegalaxy.org/published/workflow?id=9e74e3455e47c813, https://usegalaxy.org/published/workflow?id=9e9a027e0c294a79, https://usegalaxy.org/published/workflow?id=9eb29b71d7effefc, https://usegalaxy.org/published/workflow?id=9edc78f665579559, https://usegalaxy.org/published/workflow?id=9f1e8e82fb3e2033, https://usegalaxy.org/published/workflow?id=9f55643d3fd6f28c, https://usegalaxy.org/published/workflow?id=a164d857439a126f, https://usegalaxy.org/published/workflow?id=a17af8b7b2b39c1a, https://usegalaxy.org/published/workflow?id=a2046dd883227b49, https://usegalaxy.org/published/workflow?id=a4a56efb37d845bf, https://usegalaxy.org/published/workflow?id=a57a4249a8a21a6d, https://usegalaxy.org/published/workflow?id=a63d3ee4a2a4a20b, https://usegalaxy.org/published/workflow?id=a719660eb1877f54, https://usegalaxy.org/published/workflow?id=a89008fccc1f1d17, https://usegalaxy.org/published/workflow?id=a89d1b74566d516d, https://usegalaxy.org/published/workflow?id=a8a38b594183db2b, https://usegalaxy.org/published/workflow?id=a8e0f77cd6ef49f9, https://usegalaxy.org/published/workflow?id=a8e5adb65d064641, https://usegalaxy.org/published/workflow?id=a8f633b79b20c760, https://usegalaxy.org/published/workflow?id=a986e4991fc61c92, https://usegalaxy.org/published/workflow?id=a99a938953be5fd6, https://usegalaxy.org/published/workflow?id=ab0be4897d5355ac, https://usegalaxy.org/published/workflow?id=ac87b6133de6a03f, https://usegalaxy.org/published/workflow?id=ac8b74b911778fbc, https://usegalaxy.org/published/workflow?id=acada5044d64a30a, https://usegalaxy.org/published/workflow?id=acae55e8f37fea59, https://usegalaxy.org/published/workflow?id=ace738014a7278b0, https://usegalaxy.org/published/workflow?id=adb86df9061dca2b, https://usegalaxy.org/published/workflow?id=adbed5c956a71543, https://usegalaxy.org/published/workflow?id=ae1de4267e4da154, https://usegalaxy.org/published/workflow?id=ae523fe6c9183e58, https://usegalaxy.org/published/workflow?id=ae5327f6f30b6138, https://usegalaxy.org/published/workflow?id=af5d714396856e9a, https://usegalaxy.org/published/workflow?id=af71519c81429287, https://usegalaxy.org/published/workflow?id=afd7633a34d68704, https://usegalaxy.org/published/workflow?id=b0b6dfa166b0d873, https://usegalaxy.org/published/workflow?id=b19a9163c26f1270, https://usegalaxy.org/published/workflow?id=b1dc9cf054a63be5, https://usegalaxy.org/published/workflow?id=b232caf4a1e1b7ee, https://usegalaxy.org/published/workflow?id=b3c8d64eca750ecf, https://usegalaxy.org/published/workflow?id=b5e8f4a0ff226921, https://usegalaxy.org/published/workflow?id=b63d1e1024cc3295, https://usegalaxy.org/published/workflow?id=b661fb850c4b4b01, https://usegalaxy.org/published/workflow?id=b6d535f210efa18e, https://usegalaxy.org/published/workflow?id=b78a75ae89ae4c79, https://usegalaxy.org/published/workflow?id=b86d24a103181742, https://usegalaxy.org/published/workflow?id=b893662378ed3da0, https://usegalaxy.org/published/workflow?id=ba5889301928907f, https://usegalaxy.org/published/workflow?id=bae2d6b436cd80ef, https://usegalaxy.org/published/workflow?id=bb1cb6abfe84a646, https://usegalaxy.org/published/workflow?id=bb25ac3ba4863424, https://usegalaxy.org/published/workflow?id=bbc894a79eb0e769, https://usegalaxy.org/published/workflow?id=bcb798fb718968ce, https://usegalaxy.org/published/workflow?id=bceb6ae418bef9b8, https://usegalaxy.org/published/workflow?id=bd2ce9a97c1598df, https://usegalaxy.org/published/workflow?id=bd3bed78eb99e294, https://usegalaxy.org/published/workflow?id=bd6bfd338ffb9637, https://usegalaxy.org/published/workflow?id=bdfb27e4ef7b6138, https://usegalaxy.org/published/workflow?id=bf3f71a748d88490, https://usegalaxy.org/published/workflow?id=bfd2e7e63d3e6856, https://usegalaxy.org/published/workflow?id=bfef75672b9c3ea4, https://usegalaxy.org/published/workflow?id=c0746df296544a3a, https://usegalaxy.org/published/workflow?id=c0a108e53ab05b0d, https://usegalaxy.org/published/workflow?id=c0a9a2d53b8660de, https://usegalaxy.org/published/workflow?id=c1339c998a55431c, https://usegalaxy.org/published/workflow?id=c156e67ad1ae4a97, https://usegalaxy.org/published/workflow?id=c1ec12905944ca7b, https://usegalaxy.org/published/workflow?id=c20a68563e80d401, https://usegalaxy.org/published/workflow?id=c2898d28a3b380d6, https://usegalaxy.org/published/workflow?id=c30bfd545ef3a228, https://usegalaxy.org/published/workflow?id=c4ac09605633655c, https://usegalaxy.org/published/workflow?id=c57f70d686b6062e, https://usegalaxy.org/published/workflow?id=c69f8c26ec5fb8a6, https://usegalaxy.org/published/workflow?id=c707871e1dc9e21d, https://usegalaxy.org/published/workflow?id=c712b85a55da2a2d, https://usegalaxy.org/published/workflow?id=c74e3a24751d9924, https://usegalaxy.org/published/workflow?id=c81833a367445f98, https://usegalaxy.org/published/workflow?id=c96b12be162f744b, https://usegalaxy.org/published/workflow?id=c983ea8a32662cd6, https://usegalaxy.org/published/workflow?id=ca36eebd59575df3, https://usegalaxy.org/published/workflow?id=cb011900fc0ee12a, https://usegalaxy.org/published/workflow?id=cbbd7e95041d9429, https://usegalaxy.org/published/workflow?id=cd4d88429f096fbc, https://usegalaxy.org/published/workflow?id=cd5f803c80875b9c, https://usegalaxy.org/published/workflow?id=cd824d8631d6a55e, https://usegalaxy.org/published/workflow?id=ce815d36cbb57304, https://usegalaxy.org/published/workflow?id=cf2dbc29ca20ebee, https://usegalaxy.org/published/workflow?id=cf3320614654adfe, https://usegalaxy.org/published/workflow?id=d00ac64dcd07f91a, https://usegalaxy.org/published/workflow?id=d08135fa13d1745e, https://usegalaxy.org/published/workflow?id=d2759906e4124964, https://usegalaxy.org/published/workflow?id=d2f7fd589a91124a, https://usegalaxy.org/published/workflow?id=d3f35215e6f45d79, https://usegalaxy.org/published/workflow?id=d4029ce1344e874a, https://usegalaxy.org/published/workflow?id=d768a4a06d3b1a90, https://usegalaxy.org/published/workflow?id=d82db9c29b998f22, https://usegalaxy.org/published/workflow?id=d903c7215a88c79f, https://usegalaxy.org/published/workflow?id=d9840d6ecf2b4d2f, https://usegalaxy.org/published/workflow?id=daaded719dcfd53b, https://usegalaxy.org/published/workflow?id=dae5d5e5df5c4dd7, https://usegalaxy.org/published/workflow?id=dbc650d226e89013, https://usegalaxy.org/published/workflow?id=dc006ebf798f1f2f, https://usegalaxy.org/published/workflow?id=dc7f05cb5a62da77, https://usegalaxy.org/published/workflow?id=dcf658333596d76a, https://usegalaxy.org/published/workflow?id=ddf222b797082436, https://usegalaxy.org/published/workflow?id=de208a900880dcdc, https://usegalaxy.org/published/workflow?id=de24e5678f541584, https://usegalaxy.org/published/workflow?id=de29cd965a2e93d3, https://usegalaxy.org/published/workflow?id=de9c2db125a5ea27, https://usegalaxy.org/published/workflow?id=df24d76ebf13e3c1, https://usegalaxy.org/published/workflow?id=df8b49863e83824d, https://usegalaxy.org/published/workflow?id=dff3cf6921b3d4d6, https://usegalaxy.org/published/workflow?id=e035be74e3c85bf5, https://usegalaxy.org/published/workflow?id=e0ec503626fa0d58, https://usegalaxy.org/published/workflow?id=e12296df7cf33c69, https://usegalaxy.org/published/workflow?id=e1aad86fdf9e6616, https://usegalaxy.org/published/workflow?id=e1dcdc125122f561, https://usegalaxy.org/published/workflow?id=e33f6a058c5f57e5, https://usegalaxy.org/published/workflow?id=e42a07b777c9f9dc, https://usegalaxy.org/published/workflow?id=e4dd39237df58884, https://usegalaxy.org/published/workflow?id=e58a87508a337b91, https://usegalaxy.org/published/workflow?id=e5f79f576548f7c5, https://usegalaxy.org/published/workflow?id=e65eb8a3bafde22b, https://usegalaxy.org/published/workflow?id=e7586d70715207b5, https://usegalaxy.org/published/workflow?id=e7fa48d7fd40908b, https://usegalaxy.org/published/workflow?id=e899acc664c8b808, https://usegalaxy.org/published/workflow?id=e9927c058ec0661f, https://usegalaxy.org/published/workflow?id=e9f4de639f4cfe02, https://usegalaxy.org/published/workflow?id=e9ffad95baa43478, https://usegalaxy.org/published/workflow?id=ea248022a4217e0e, https://usegalaxy.org/published/workflow?id=ea4c2defce2f5258, https://usegalaxy.org/published/workflow?id=ea5d2401f6711dff, https://usegalaxy.org/published/workflow?id=ea61cd21e3fbad2b, https://usegalaxy.org/published/workflow?id=eafe4aa62a600e1d, https://usegalaxy.org/published/workflow?id=ec2f77224324f22e, https://usegalaxy.org/published/workflow?id=ec66767cab0022ee, https://usegalaxy.org/published/workflow?id=edf9be785ab9eb65, https://usegalaxy.org/published/workflow?id=ee27581327d147da, https://usegalaxy.org/published/workflow?id=ee3b8d7ba29da11c, https://usegalaxy.org/published/workflow?id=efe7ca87323773c0, https://usegalaxy.org/published/workflow?id=f062eda543541ba8, https://usegalaxy.org/published/workflow?id=f09033420c6267ab, https://usegalaxy.org/published/workflow?id=f0ee8bcd7c8fadca, https://usegalaxy.org/published/workflow?id=f18946db4c93e88b, https://usegalaxy.org/published/workflow?id=f1a54b10d4afce8f, https://usegalaxy.org/published/workflow?id=f1c2d920bd41cebb, https://usegalaxy.org/published/workflow?id=f29d1bcfeaacba04, https://usegalaxy.org/published/workflow?id=f3b417763495221b, https://usegalaxy.org/published/workflow?id=f3c8093c5b8a7233, https://usegalaxy.org/published/workflow?id=f5805e66642fed04, https://usegalaxy.org/published/workflow?id=f5bd2da36ab0a870, https://usegalaxy.org/published/workflow?id=f733ad0a6cc50cb9, https://usegalaxy.org/published/workflow?id=f765c8aa4bc3176c, https://usegalaxy.org/published/workflow?id=f7975ae799daf463, https://usegalaxy.org/published/workflow?id=f93b5864d6d2659c, https://usegalaxy.org/published/workflow?id=f9cd2289c007f103, https://usegalaxy.org/published/workflow?id=fa226c044fa026ef, https://usegalaxy.org/published/workflow?id=fa26fd51caea53c7, https://usegalaxy.org/published/workflow?id=fb588edfd343b24d, https://usegalaxy.org/published/workflow?id=fc130cb411aa7d06, https://usegalaxy.org/published/workflow?id=fc7b14aafa0b421e, https://usegalaxy.org/published/workflow?id=fcae9dfcdca70798, https://usegalaxy.org/published/workflow?id=fcbd4767298488b9, https://usegalaxy.org/published/workflow?id=fcbe12fc4eaae12e, https://usegalaxy.org/published/workflow?id=fce1837144d3a86e, https://usegalaxy.org/published/workflow?id=fd30cdfe7e38b508, https://usegalaxy.org/published/workflow?id=fd40e50c9f1545ce, https://usegalaxy.org/published/workflow?id=fd75347cfea06651, https://usegalaxy.org/published/workflow?id=fe262214fba1cb8e, https://usegalaxy.org/published/workflow?id=fe4c2791508c56ab, https://workflowhub.eu/workflows/1104?version=2, https://workflowhub.eu/workflows/1444?version=2, https://workflowhub.eu/workflows/1466?version=2, https://workflowhub.eu/workflows/1480?version=1, https://workflowhub.eu/workflows/1530?version=1, https://workflowhub.eu/workflows/1534?version=1, https://workflowhub.eu/workflows/1568?version=1, https://workflowhub.eu/workflows/1607?version=1, https://workflowhub.eu/workflows/1629?version=1, https://workflowhub.eu/workflows/1631?version=1, https://workflowhub.eu/workflows/1640?version=1, https://workflowhub.eu/workflows/1675?version=1, https://workflowhub.eu/workflows/1681?version=1, https://workflowhub.eu/workflows/1692?version=1, https://workflowhub.eu/workflows/1706?version=1, https://workflowhub.eu/workflows/1715?version=1, https://workflowhub.eu/workflows/346?version=1, https://workflowhub.eu/workflows/394?version=1, https://workflowhub.eu/workflows/395?version=15, https://workflowhub.eu/workflows/397?version=14, https://workflowhub.eu/workflows/398?version=15, https://workflowhub.eu/workflows/399?version=19, https://workflowhub.eu/workflows/400?version=12, https://workflowhub.eu/workflows/401?version=13, https://workflowhub.eu/workflows/602?version=2, https://workflowhub.eu/workflows/612?version=23, https://workflowhub.eu/workflows/641?version=25, https://workflowhub.eu/workflows/642?version=23, https://workflowhub.eu/workflows/66?version=1, https://workflowhub.eu/workflows/67?version=1, https://workflowhub.eu/workflows/688?version=1 |
assembly/metagenomics-assembly, assembly/vgp_genome_assembly, contributing/create-new-tutorial, ecology/ENA_Biodiv_submission, epigenetics/atac-seq, genome-annotation/crispr-screen, genome-annotation/tnseq, microbiome/metagenomics-assembly, microbiome/metatranscriptomics, microbiome/metatranscriptomics-short, sequence-analysis/quality-control, transcriptomics/clipseq, transcriptomics/minerva-pathways, transcriptomics/ref-based, transcriptomics/rna-interactome, transcriptomics/rna-seq-reads-to-counts |
|
cutesv |
cutesv |
Long-read sequencing enables the comprehensive discovery of structural variations (SVs). However, it is still non-trivial to achieve high sensitivity and performance simultaneously due to the complex SV characteristics implied by noisy long reads. Therefore, we propose cuteSV, a sensitive, fast and scalable long-read-based SV detection approach. cuteSV uses tailored methods to collect the signatures of various types of SVs and employs a clustering-and-refinement method to analyze the signatures to implement sensitive SV detection. Benchmarks on real Pacific Biosciences (PacBio) and Oxford Nanopore Technology (ONT) datasets demonstrate that cuteSV has better yields and scalability than state-of-the-art tools. |
2020-09-23 |
https://github.com/tjiangHIT/cuteSV |
2.1.2 |
cutesv |
2.1.2 |
Up-to-date |
Variant Analysis |
Split read mapping, Genotyping, Structural variation detection |
Split read mapping, Genotyping, Structural variation detection |
DNA structural variation, Sequencing, Computer science |
Sequencing, Computer science |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutesv |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/cutesv |
cuteSV |
cuteSV |
Long Read based Human Genomic Structural Variation Detection with cuteSV | Long-read sequencing technologies enable to comprehensively discover structural variations (SVs). However, it is still non-trivial for state-of-the-art approaches to detect SVs with high sensitivity or high performance or both. Herein, we propose cuteSV, a sensitive, fast and lightweight SV detection approach. cuteSV uses tailored methods to comprehensively collect various types of SV signatures, and a clustering-and-refinement method to implement a stepwise SV detection, which enables to achieve high sensitivity without loss of accuracy. Benchmark results demonstrate that cuteSV has better yields on real datasets. Further, its speed and scalability are outstanding and promising to large-scale data analysis |
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
51 |
51 |
283 |
283 |
0 |
0 |
0 |
0 |
11 |
11 |
141 |
141 |
0 |
0 |
0 |
0 |
424 |
424 |
62 |
62 |
|
|
|
cwpair2 |
cwpair2 |
Contains a tool that takes a list of called peaks on both strands and produces a list of matched pairsand a list of unmatched orphans. |
2015-12-18 |
|
1.1.1 |
matplotlib |
|
To update |
ChIP-seq |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/cwpair2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/cwpair2 |
|
|
|
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
38 |
83 |
127 |
281 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
281 |
127 |
83 |
38 |
|
|
|
dada2 |
dada2_assignTaxonomyAddspecies, dada2_dada, dada2_filterAndTrim, dada2_learnErrors, dada2_makeSequenceTable, dada2_mergePairs, dada2_plotComplexity, dada2_plotQualityProfile, dada2_primerCheck, dada2_removeBimeraDenovo, dada2_seqCounts |
DADA2 wrappers |
2019-07-05 |
https://benjjneb.github.io/dada2/index.html |
1.34.0 |
bioconductor-dada2 |
1.34.0 |
Up-to-date |
Metagenomics |
Variant calling, DNA barcoding |
Variant calling, DNA barcoding |
Sequencing, Genetic variation, Microbial ecology, Metagenomics |
Sequencing, Genetic variation, Microbial ecology, Metagenomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/dada2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/dada2 |
dada2 |
dada2 |
This package infers exact sequence variants (SVs) from amplicon data, replacing the commonly used and coarser OTU clustering approach. This pipeline inputs demultiplexed fastq files, and outputs the sequence variants and their sample-wise abundances after removing substitution and chimera errors. Taxonomic classification is available via a native implementation of the RDP naive Bayesian classifier. |
|
10 |
10 |
11 |
11 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
10 |
10 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
10 |
10 |
0 |
570 |
573 |
120579 |
120969 |
1029 |
1030 |
211412 |
211497 |
109 |
109 |
20111 |
20111 |
50 |
50 |
26613 |
26613 |
379190 |
378715 |
1762 |
1758 |
https://dev.workflowhub.eu/workflows/1105?version=2, https://usegalaxy.eu/published/workflow?id=48d0dc424e71d8c2, https://usegalaxy.eu/published/workflow?id=642f4c47028031d7, https://usegalaxy.eu/published/workflow?id=7b557efda89bb998, https://usegalaxy.eu/published/workflow?id=b483cf6a138d2372, https://usegalaxy.eu/published/workflow?id=e132370adf8f2838, https://usegalaxy.eu/published/workflow?id=e3918808605cf8cd, https://usegalaxy.fr/published/workflow?id=b5d86d505c09d170, https://usegalaxy.org.au/published/workflow?id=1016f17b77a8216d, https://usegalaxy.org.au/published/workflow?id=2d05f15a9616cc47, https://usegalaxy.org.au/published/workflow?id=400fbd96fb04c60e, https://usegalaxy.org/published/workflow?id=0942f2f3386e6b41, https://usegalaxy.org/published/workflow?id=4faff660f6defa10, https://usegalaxy.org/published/workflow?id=5df593510c7d944d, https://usegalaxy.org/published/workflow?id=78e60413358273bc, https://usegalaxy.org/published/workflow?id=806ef8816168916f, https://usegalaxy.org/published/workflow?id=e067c4e66f0af362, https://usegalaxy.org/published/workflow?id=ecf3a7f9da7409ef, https://workflowhub.eu/workflows/1395?version=2, https://workflowhub.eu/workflows/790?version=3 |
microbiome/dada-16S |
|
das_tool |
Fasta_to_Contig2Bin, das_tool |
DAS Tool for genome resolved metagenomics |
2022-06-23 |
https://github.com/cmks/DAS_Tool |
1.1.7 |
das_tool |
1.1.7 |
Up-to-date |
Metagenomics |
Read binning |
Read binning |
Metagenomics |
Metagenomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/das_tool |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/das_tool |
dastool |
dastool |
DAS Tool is an automated method that integrates the results of a flexible number of binning algorithms to calculate an optimized, non-redundant set of bins from a single assembly. |
|
2 |
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
49 |
49 |
4440 |
4440 |
1 |
1 |
7 |
7 |
0 |
0 |
0 |
0 |
2 |
2 |
1080 |
1080 |
5527 |
5527 |
52 |
52 |
https://usegalaxy.eu/published/workflow?id=0563f58718be932d, https://usegalaxy.eu/published/workflow?id=1e5f1d9a51032e44, https://usegalaxy.eu/published/workflow?id=3f6c7249ef71ae41, https://usegalaxy.eu/published/workflow?id=43098b8afe78b071, https://usegalaxy.eu/published/workflow?id=7ecd92cb382d8168, https://usegalaxy.eu/published/workflow?id=83c5bf0208f4d217, https://usegalaxy.eu/published/workflow?id=97312d273b6e8bd9, https://usegalaxy.eu/published/workflow?id=aa5b077da1d36b23, https://usegalaxy.eu/published/workflow?id=b0377f05f97b18b1, https://usegalaxy.eu/published/workflow?id=ce5c9287a67e6085, https://workflowhub.eu/workflows/1352?version=3 |
|
|
data_manager_homer_preparse |
homer_annotatePeaks, homer_findMotifs, homer_findMotifsGenome, homer_gtf_to_annotations, homer_scanMotifGenomeWide |
HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis. |
2021-08-08 |
http://homer.ucsd.edu/homer/index.html |
4.11 |
homer |
5.1 |
To update |
Sequence Analysis |
Sequence motif discovery |
Sequence motif discovery |
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/homer |
homer |
homer |
HOMER contains a novel motif discovery algorithm that was designed for regulatory element analysis in genomics applications (DNA only, no protein). It is a differential motif discovery algorithm, which means that it takes two sets of sequences and tries to identify the regulatory elements that are specifically enriched in on set relative to the other. It uses ZOOPS scoring (zero or one occurrence per sequence) coupled with the hypergeometric enrichment calculations (or binomial) to determine motif enrichment. HOMER also tries its best to account for sequenced bias in the dataset. It was designed with ChIP-Seq and promoter analysis in mind, but can be applied to pretty much any nucleic acids motif finding problem. |
|
0 |
0 |
5 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
0 |
0 |
247 |
247 |
9800 |
9800 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
22 |
23 |
341 |
487 |
10287 |
10141 |
270 |
269 |
https://usegalaxy.eu/published/workflow?id=d3a4e6cc1b4565e5 |
|
|
data_source_iris_tcga |
data_source_iris_tcga |
IRIS-TCGA Data source tool |
2016-02-18 |
|
1.0.0 |
python |
|
To update |
Data Source |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/data_source_iris_tcga |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/data_source_iris_tcga |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
datamash |
datamash_ops, datamash_reverse, datamash_transpose |
GNU Datamash is a command-line program which performs basicnumeric,textual and statistical operations on input textual data files.It is designed to be portable and reliable, and aid researchersto easily automate analysis pipelines, without writing code or even short scripts.License: GPL Version 3 (or later).These tool wrappers were originally writen by Assaf Gordon. |
2015-08-03 |
https://www.gnu.org/software/datamash/ |
1.9 |
datamash |
1.1.0 |
To update |
Text Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/datamash |
|
|
|
|
3 |
3 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
3 |
3 |
3 |
0 |
5196 |
5438 |
816706 |
830116 |
4384 |
4900 |
105768 |
124466 |
2001 |
2015 |
20381 |
20494 |
144 |
144 |
4599 |
4599 |
979675 |
947454 |
12497 |
11725 |
https://dev.workflowhub.eu/workflows/1018?version=1, https://dev.workflowhub.eu/workflows/1019?version=1, https://dev.workflowhub.eu/workflows/1020?version=1, https://dev.workflowhub.eu/workflows/1026?version=1, https://dev.workflowhub.eu/workflows/1064?version=1, https://dev.workflowhub.eu/workflows/1078?version=1, https://dev.workflowhub.eu/workflows/1085?version=2, https://dev.workflowhub.eu/workflows/1090?version=2, https://dev.workflowhub.eu/workflows/1098?version=1, https://dev.workflowhub.eu/workflows/1106?version=2, https://dev.workflowhub.eu/workflows/1113?version=2, https://dev.workflowhub.eu/workflows/1138?version=2, https://dev.workflowhub.eu/workflows/1206?version=1, https://dev.workflowhub.eu/workflows/1228?version=1, https://dev.workflowhub.eu/workflows/1233?version=1, https://dev.workflowhub.eu/workflows/1240?version=1, https://dev.workflowhub.eu/workflows/1247?version=2, https://dev.workflowhub.eu/workflows/1251?version=2, https://dev.workflowhub.eu/workflows/1255?version=2, https://dev.workflowhub.eu/workflows/1259?version=3, https://dev.workflowhub.eu/workflows/1261?version=1, https://dev.workflowhub.eu/workflows/1283?version=2, https://dev.workflowhub.eu/workflows/1297?version=1, https://dev.workflowhub.eu/workflows/1301?version=2, https://dev.workflowhub.eu/workflows/1311?version=2, https://dev.workflowhub.eu/workflows/1390?version=1, https://dev.workflowhub.eu/workflows/1391?version=1, https://dev.workflowhub.eu/workflows/1392?version=1, https://dev.workflowhub.eu/workflows/199?version=2, https://dev.workflowhub.eu/workflows/583?version=1, https://usegalaxy.cz/published/workflow?id=a5241f01bb65bd38, https://usegalaxy.eu/published/workflow?id=030e978022e19375, https://usegalaxy.eu/published/workflow?id=036990ecf300a99f, https://usegalaxy.eu/published/workflow?id=03e8b0d3dcedc092, https://usegalaxy.eu/published/workflow?id=05bd1d9c61df5d16, https://usegalaxy.eu/published/workflow?id=08eb5e55109c4d9c, https://usegalaxy.eu/published/workflow?id=098f43ded1b5fa7f, https://usegalaxy.eu/published/workflow?id=0bfb81f2a0202b25, https://usegalaxy.eu/published/workflow?id=0c94260298199d8b, https://usegalaxy.eu/published/workflow?id=0d24e8ff7221c9dc, https://usegalaxy.eu/published/workflow?id=0e492839192d26e0, https://usegalaxy.eu/published/workflow?id=14714876dda7186d, https://usegalaxy.eu/published/workflow?id=1526d3918b201c72, https://usegalaxy.eu/published/workflow?id=16418e8b023ff226, https://usegalaxy.eu/published/workflow?id=1749616cec69fb00, https://usegalaxy.eu/published/workflow?id=19bb27eea9bcdb6f, https://usegalaxy.eu/published/workflow?id=1ac5745645634825, https://usegalaxy.eu/published/workflow?id=1b72af1870c540d6, https://usegalaxy.eu/published/workflow?id=1da86d74f8535f4e, https://usegalaxy.eu/published/workflow?id=204854b8ec94da85, https://usegalaxy.eu/published/workflow?id=20592f292c205954, https://usegalaxy.eu/published/workflow?id=21315ffd2df2f159, https://usegalaxy.eu/published/workflow?id=220961d803697f54, https://usegalaxy.eu/published/workflow?id=2424282f793f0f1b, https://usegalaxy.eu/published/workflow?id=2469d5a9b58697d1, https://usegalaxy.eu/published/workflow?id=272e9106e50c9fe6, https://usegalaxy.eu/published/workflow?id=27fca972f1d1a312, https://usegalaxy.eu/published/workflow?id=288da0863f5032f3, https://usegalaxy.eu/published/workflow?id=2d509fad86eb97fb, https://usegalaxy.eu/published/workflow?id=2d9d4445a1871230, https://usegalaxy.eu/published/workflow?id=31c6dcd3a25620df, https://usegalaxy.eu/published/workflow?id=321ea55011f1248f, https://usegalaxy.eu/published/workflow?id=35c092316cdc27d1, https://usegalaxy.eu/published/workflow?id=37499202ce35c2d8, https://usegalaxy.eu/published/workflow?id=37b04b02ec08e84f, https://usegalaxy.eu/published/workflow?id=389d992ff7268247, https://usegalaxy.eu/published/workflow?id=392a5d91ac221104, https://usegalaxy.eu/published/workflow?id=3a4ef58e24e7b1ef, https://usegalaxy.eu/published/workflow?id=3a7a0abd351f2cbb, https://usegalaxy.eu/published/workflow?id=3f61bd49caa49440, https://usegalaxy.eu/published/workflow?id=412617e754e76528, https://usegalaxy.eu/published/workflow?id=429ae28a178cd07c, https://usegalaxy.eu/published/workflow?id=44e16f0782f54111, https://usegalaxy.eu/published/workflow?id=454f3b736267aa2d, https://usegalaxy.eu/published/workflow?id=461bd2ef88dd737c, https://usegalaxy.eu/published/workflow?id=466bdd8ba7b67264, https://usegalaxy.eu/published/workflow?id=475e4a5c3b1acda3, https://usegalaxy.eu/published/workflow?id=476db04368d5e90c, https://usegalaxy.eu/published/workflow?id=498311923691884b, https://usegalaxy.eu/published/workflow?id=49a6ddcba35bf085, https://usegalaxy.eu/published/workflow?id=49d3cbacd6112a72, https://usegalaxy.eu/published/workflow?id=4b9459829b45ec67, https://usegalaxy.eu/published/workflow?id=4bfc4aa8059e8913, https://usegalaxy.eu/published/workflow?id=4c0000eb4995a310, https://usegalaxy.eu/published/workflow?id=4d97068a725c975c, https://usegalaxy.eu/published/workflow?id=4f9f050e34747d51, https://usegalaxy.eu/published/workflow?id=516b4d4146e4af66, https://usegalaxy.eu/published/workflow?id=518469bc5efb8728, https://usegalaxy.eu/published/workflow?id=51b0f5f95075cf7b, https://usegalaxy.eu/published/workflow?id=529f30e894beacc2, https://usegalaxy.eu/published/workflow?id=55b66e0164f0c84b, https://usegalaxy.eu/published/workflow?id=57cfe5062c8e01bf, https://usegalaxy.eu/published/workflow?id=58e02abff434734e, https://usegalaxy.eu/published/workflow?id=5900578d64e01001, https://usegalaxy.eu/published/workflow?id=5b686090a45f803f, https://usegalaxy.eu/published/workflow?id=5cef0f268d6ff4e0, https://usegalaxy.eu/published/workflow?id=5ec0d6d108e02e1a, https://usegalaxy.eu/published/workflow?id=5ed38d8114bcd6f7, https://usegalaxy.eu/published/workflow?id=5fb6cb6c80a5c62f, https://usegalaxy.eu/published/workflow?id=62998b8a162d30c1, https://usegalaxy.eu/published/workflow?id=6588229d0365657f, https://usegalaxy.eu/published/workflow?id=6c0560c041bde8c6, https://usegalaxy.eu/published/workflow?id=6e0330de5d80e619, https://usegalaxy.eu/published/workflow?id=6e1fe7372e93fae0, https://usegalaxy.eu/published/workflow?id=6ed1016dfdf9f928, https://usegalaxy.eu/published/workflow?id=6f4bbed7a320dc2f, https://usegalaxy.eu/published/workflow?id=704e6c9bc51db49f, https://usegalaxy.eu/published/workflow?id=70cae21eafab7c03, https://usegalaxy.eu/published/workflow?id=70ec8b1719e25982, https://usegalaxy.eu/published/workflow?id=713e7c113a764ffb, https://usegalaxy.eu/published/workflow?id=71a3534a6dc573ed, https://usegalaxy.eu/published/workflow?id=71a7113386b2cdc1, https://usegalaxy.eu/published/workflow?id=76d3408d0d22ad05, https://usegalaxy.eu/published/workflow?id=7705b1e25110baf4, https://usegalaxy.eu/published/workflow?id=7caa58e36df6ad03, https://usegalaxy.eu/published/workflow?id=8172bf190ce30036, https://usegalaxy.eu/published/workflow?id=836cc09d17eaecb0, https://usegalaxy.eu/published/workflow?id=88f5cef7e4146520, https://usegalaxy.eu/published/workflow?id=89358143505d6dad, https://usegalaxy.eu/published/workflow?id=8b00eb89132be02f, https://usegalaxy.eu/published/workflow?id=8b7de28980c455ce, https://usegalaxy.eu/published/workflow?id=8d00a8b70b0c019c, https://usegalaxy.eu/published/workflow?id=8eeff1c78f84731a, https://usegalaxy.eu/published/workflow?id=8f9bbda01c59673d, https://usegalaxy.eu/published/workflow?id=8faf828e269ca54c, https://usegalaxy.eu/published/workflow?id=9019642fcce59ae2, https://usegalaxy.eu/published/workflow?id=96158fee05bbca5f, https://usegalaxy.eu/published/workflow?id=96b75a7373a58aae, https://usegalaxy.eu/published/workflow?id=9953f2d313643f2b, https://usegalaxy.eu/published/workflow?id=99c7ec2841af3a20, https://usegalaxy.eu/published/workflow?id=9a657909d6191203, https://usegalaxy.eu/published/workflow?id=9aa290ce1927d700, https://usegalaxy.eu/published/workflow?id=9ac51f1eeaff5e9c, https://usegalaxy.eu/published/workflow?id=9c5a0596956064a6, https://usegalaxy.eu/published/workflow?id=9dc6c073f9994265, https://usegalaxy.eu/published/workflow?id=9e0d784860d6cc91, https://usegalaxy.eu/published/workflow?id=9e497c5c9e64d9b3, https://usegalaxy.eu/published/workflow?id=9eb29cc96d8d75c2, https://usegalaxy.eu/published/workflow?id=9edd9ccffe6f4c59, https://usegalaxy.eu/published/workflow?id=a31100610fba17a1, https://usegalaxy.eu/published/workflow?id=a403c661bf1bc4fa, https://usegalaxy.eu/published/workflow?id=a7ae5dbedf55c7d6, https://usegalaxy.eu/published/workflow?id=ada52ba09b462567, https://usegalaxy.eu/published/workflow?id=ae380023cd06f640, https://usegalaxy.eu/published/workflow?id=b14845359b702444, https://usegalaxy.eu/published/workflow?id=b402aee2dc424569, https://usegalaxy.eu/published/workflow?id=b77e3b08092fa73e, https://usegalaxy.eu/published/workflow?id=b7c2440621968526, https://usegalaxy.eu/published/workflow?id=bf655ab3dc6fd76a, https://usegalaxy.eu/published/workflow?id=c917db7d7ba7ea6f, https://usegalaxy.eu/published/workflow?id=c9f83ce86d407902, https://usegalaxy.eu/published/workflow?id=ca6d971fc3a0f417, https://usegalaxy.eu/published/workflow?id=cb2df493f5e334f7, https://usegalaxy.eu/published/workflow?id=cb3d961914ede12e, https://usegalaxy.eu/published/workflow?id=cb978151b1686b71, https://usegalaxy.eu/published/workflow?id=cc385bd4376a907c, https://usegalaxy.eu/published/workflow?id=ccda8222900499a7, https://usegalaxy.eu/published/workflow?id=cda516957bcfcd9c, https://usegalaxy.eu/published/workflow?id=ce1712139b4a4273, https://usegalaxy.eu/published/workflow?id=cfd37e9e307e5d3d, https://usegalaxy.eu/published/workflow?id=d0ae255151450dad, https://usegalaxy.eu/published/workflow?id=d33ab07e4cf44f8c, https://usegalaxy.eu/published/workflow?id=d3dfe7ba11508c72, https://usegalaxy.eu/published/workflow?id=d5f5be2c96f9e797, https://usegalaxy.eu/published/workflow?id=e2391c40d24d403f, https://usegalaxy.eu/published/workflow?id=e3165c295bc243e4, https://usegalaxy.eu/published/workflow?id=e472096116cbe392, https://usegalaxy.eu/published/workflow?id=e573c6b697524e3a, https://usegalaxy.eu/published/workflow?id=e71a3c5ca3c31df1, https://usegalaxy.eu/published/workflow?id=e795e7f59b4de5e6, https://usegalaxy.eu/published/workflow?id=eb03839cc36048f5, https://usegalaxy.eu/published/workflow?id=ef6556d65ce5d72c, https://usegalaxy.eu/published/workflow?id=f05754467a439134, https://usegalaxy.eu/published/workflow?id=f4a55ef0d4c2cd97, https://usegalaxy.eu/published/workflow?id=f5798b2f5aeccf9f, https://usegalaxy.eu/published/workflow?id=f689faf267fbe504, https://usegalaxy.eu/published/workflow?id=f698bed6a0867f5f, https://usegalaxy.eu/published/workflow?id=f71ab313c4e7a25c, https://usegalaxy.eu/published/workflow?id=f774cf05ddff3612, https://usegalaxy.eu/published/workflow?id=fe0cf1fa5055d4e1, https://usegalaxy.eu/published/workflow?id=fed55dc53c5325ff, https://usegalaxy.eu/published/workflow?id=ff2fd4a4bb27d859, https://usegalaxy.fr/published/workflow?id=61235264d5d2f666, https://usegalaxy.fr/published/workflow?id=65ab28829a1f9803, https://usegalaxy.fr/published/workflow?id=798c8ff19825ab2c, https://usegalaxy.fr/published/workflow?id=7c0a90d4e53bca51, https://usegalaxy.fr/published/workflow?id=80c1ec9c609e79ef, https://usegalaxy.fr/published/workflow?id=b168a179d1b456cb, https://usegalaxy.fr/published/workflow?id=e3c04a30258421aa, https://usegalaxy.org.au/published/workflow?id=04c9266c6a863fab, https://usegalaxy.org.au/published/workflow?id=053c054592b08dce, https://usegalaxy.org.au/published/workflow?id=08f53503bfb0f421, https://usegalaxy.org.au/published/workflow?id=09f0170639c978e8, https://usegalaxy.org.au/published/workflow?id=102eb726f63f3190, https://usegalaxy.org.au/published/workflow?id=12d36e402f858c65, https://usegalaxy.org.au/published/workflow?id=16c6c253e009cc0d, https://usegalaxy.org.au/published/workflow?id=1727d16fa4dec19c, https://usegalaxy.org.au/published/workflow?id=1764bb1f506212e8, https://usegalaxy.org.au/published/workflow?id=1782d699b0166725, https://usegalaxy.org.au/published/workflow?id=1d1c2589f94fc4df, https://usegalaxy.org.au/published/workflow?id=2f6e22de138a64eb, https://usegalaxy.org.au/published/workflow?id=2fc7d396ef610ed8, https://usegalaxy.org.au/published/workflow?id=2fee25e188531691, https://usegalaxy.org.au/published/workflow?id=446ba22c3d2f3367, https://usegalaxy.org.au/published/workflow?id=499245b3a113e06d, https://usegalaxy.org.au/published/workflow?id=4c7e0703aace6aa3, https://usegalaxy.org.au/published/workflow?id=518d27f68e05a356, https://usegalaxy.org.au/published/workflow?id=5a975438c8752269, https://usegalaxy.org.au/published/workflow?id=5cd804644a34c8fd, https://usegalaxy.org.au/published/workflow?id=66e530368fd40abd, https://usegalaxy.org.au/published/workflow?id=6ab36c0d5b0d73e0, https://usegalaxy.org.au/published/workflow?id=6b1b0a945d367b4c, https://usegalaxy.org.au/published/workflow?id=6dfbff6d74c0601b, https://usegalaxy.org.au/published/workflow?id=7a0b3968968c5994, https://usegalaxy.org.au/published/workflow?id=7cc2b5010c56f117, https://usegalaxy.org.au/published/workflow?id=800d28ec61b15244, https://usegalaxy.org.au/published/workflow?id=8e2b94c6fbf44368, https://usegalaxy.org.au/published/workflow?id=9016b2be61f89053, https://usegalaxy.org.au/published/workflow?id=92fcdd490831c6c5, https://usegalaxy.org.au/published/workflow?id=932bad88f8dc8d33, https://usegalaxy.org.au/published/workflow?id=97cdd93e41aa46f9, https://usegalaxy.org.au/published/workflow?id=989eb73372135796, https://usegalaxy.org.au/published/workflow?id=9f112e39bd3bd746, https://usegalaxy.org.au/published/workflow?id=a320948b3eb1a421, https://usegalaxy.org.au/published/workflow?id=b432a1312859edd2, https://usegalaxy.org.au/published/workflow?id=b5e546197f47f3ec, https://usegalaxy.org.au/published/workflow?id=b601f48ecec15bf4, https://usegalaxy.org.au/published/workflow?id=b808cd1c0090b068, https://usegalaxy.org.au/published/workflow?id=b920b02a23f94d11, https://usegalaxy.org.au/published/workflow?id=b9e82e3fae56d8b4, https://usegalaxy.org.au/published/workflow?id=ba7a9d4c857d26b7, https://usegalaxy.org.au/published/workflow?id=bf999071343171b7, https://usegalaxy.org.au/published/workflow?id=cf775b8ff0745456, https://usegalaxy.org.au/published/workflow?id=d0d6743450e5060d, https://usegalaxy.org.au/published/workflow?id=daff6854b5dfc6f1, https://usegalaxy.org.au/published/workflow?id=e6552643a3713b50, https://usegalaxy.org.au/published/workflow?id=ebf88e79c4f094ba, https://usegalaxy.org.au/published/workflow?id=eda00feabdd21711, https://usegalaxy.org.au/published/workflow?id=edc20b5e70297a7d, https://usegalaxy.org.au/published/workflow?id=f7fd24318c4bf949, https://usegalaxy.org.au/published/workflow?id=fbc732db2a2821b0, https://usegalaxy.org/published/workflow?id=005924662f68a480, https://usegalaxy.org/published/workflow?id=0596162a499b4074, https://usegalaxy.org/published/workflow?id=07e761b2501971c6, https://usegalaxy.org/published/workflow?id=0e3e3958f55c606e, https://usegalaxy.org/published/workflow?id=100340be53c2851c, https://usegalaxy.org/published/workflow?id=100d0edb39f83ce7, https://usegalaxy.org/published/workflow?id=1e264fc06d87899f, https://usegalaxy.org/published/workflow?id=27e174711b459ddf, https://usegalaxy.org/published/workflow?id=2967ef82911f2cca, https://usegalaxy.org/published/workflow?id=2b09f3c9465ee054, https://usegalaxy.org/published/workflow?id=2cfbf7d01161992c, https://usegalaxy.org/published/workflow?id=2d50f038984f2389, https://usegalaxy.org/published/workflow?id=2dceaa255cc8cf83, https://usegalaxy.org/published/workflow?id=30a3744026ad86a7, https://usegalaxy.org/published/workflow?id=347571ba3b281bf4, https://usegalaxy.org/published/workflow?id=371273ba52f1f5dc, https://usegalaxy.org/published/workflow?id=4357180d40560019, https://usegalaxy.org/published/workflow?id=44bcae0e352563f9, https://usegalaxy.org/published/workflow?id=450c2181f89e6b23, https://usegalaxy.org/published/workflow?id=4e8639cc4e9050d1, https://usegalaxy.org/published/workflow?id=531d02f7213f9113, https://usegalaxy.org/published/workflow?id=5719765b1136cb05, https://usegalaxy.org/published/workflow?id=6c2bb2209aad5e44, https://usegalaxy.org/published/workflow?id=70e2f3e0d0be8e3b, https://usegalaxy.org/published/workflow?id=768cee70d9aa8cc6, https://usegalaxy.org/published/workflow?id=79a282b2bf89c6ac, https://usegalaxy.org/published/workflow?id=7af656b8ea5e7e2e, https://usegalaxy.org/published/workflow?id=7f02a9ab182a8f94, https://usegalaxy.org/published/workflow?id=88774b222152b3cd, https://usegalaxy.org/published/workflow?id=88f8feaad0f615de, https://usegalaxy.org/published/workflow?id=8a01c78688beae1d, https://usegalaxy.org/published/workflow?id=8b1eedebcb94ba93, https://usegalaxy.org/published/workflow?id=8e1c6ad6ff623015, https://usegalaxy.org/published/workflow?id=953d9cbe05e632a8, https://usegalaxy.org/published/workflow?id=95db417c58c586fa, https://usegalaxy.org/published/workflow?id=987d5caea37794c8, https://usegalaxy.org/published/workflow?id=9aa6320de30e2675, https://usegalaxy.org/published/workflow?id=9da91815a6588268, https://usegalaxy.org/published/workflow?id=9e1762e46ddf9a85, https://usegalaxy.org/published/workflow?id=a253589432a44e5a, https://usegalaxy.org/published/workflow?id=ab0ffa36361293da, https://usegalaxy.org/published/workflow?id=b1b4fc510099d592, https://usegalaxy.org/published/workflow?id=b3d83022d4944404, https://usegalaxy.org/published/workflow?id=bf1af666d4ea21e4, https://usegalaxy.org/published/workflow?id=bf79271a438ffa54, https://usegalaxy.org/published/workflow?id=c3ea8fa3bb202dc6, https://usegalaxy.org/published/workflow?id=c7b2d2ccc4b0dec5, https://usegalaxy.org/published/workflow?id=c81ae10f59b3f600, https://usegalaxy.org/published/workflow?id=cb029d0205155150, https://usegalaxy.org/published/workflow?id=cdf5dffbed938d49, https://usegalaxy.org/published/workflow?id=ce4d4397eb8a5298, https://usegalaxy.org/published/workflow?id=cf9069dd5d24d58f, https://usegalaxy.org/published/workflow?id=dcbc71347300822d, https://usegalaxy.org/published/workflow?id=e483f5a30a683925, https://usegalaxy.org/published/workflow?id=e50e36a25bae863c, https://usegalaxy.org/published/workflow?id=e91350e532c9e554, https://usegalaxy.org/published/workflow?id=eccaebba0605d876, https://usegalaxy.org/published/workflow?id=f18e6fa5270fcd37, https://usegalaxy.org/published/workflow?id=f202add6857fabbe, https://usegalaxy.org/published/workflow?id=f35ccb693cd874c1, https://usegalaxy.org/published/workflow?id=f58c90061c31bd48, https://usegalaxy.org/published/workflow?id=f7d1c6be4e4c3357, https://usegalaxy.org/published/workflow?id=fa89d2d0edabe803, https://usegalaxy.org/published/workflow?id=fbf75fbb72b488bd, https://usegalaxy.org/published/workflow?id=ff3ade25b35f4893, https://usegalaxy.org/published/workflow?id=ffd718437128bce2, https://workflowhub.eu/workflows/1057?version=8, https://workflowhub.eu/workflows/109?version=9, https://workflowhub.eu/workflows/111?version=5, https://workflowhub.eu/workflows/117?version=1, https://workflowhub.eu/workflows/1189?version=2, https://workflowhub.eu/workflows/123?version=1, https://workflowhub.eu/workflows/1256?version=1, https://workflowhub.eu/workflows/1356?version=1, https://workflowhub.eu/workflows/1402?version=1, https://workflowhub.eu/workflows/1405?version=1, https://workflowhub.eu/workflows/1426?version=1, https://workflowhub.eu/workflows/1441?version=1, https://workflowhub.eu/workflows/1473?version=1, https://workflowhub.eu/workflows/1486?version=1, https://workflowhub.eu/workflows/1489?version=1, https://workflowhub.eu/workflows/1493?version=1, https://workflowhub.eu/workflows/1519?version=1, https://workflowhub.eu/workflows/1520?version=1, https://workflowhub.eu/workflows/1523?version=1, https://workflowhub.eu/workflows/1524?version=1, https://workflowhub.eu/workflows/1527?version=1, https://workflowhub.eu/workflows/1531?version=1, https://workflowhub.eu/workflows/1536?version=1, https://workflowhub.eu/workflows/1548?version=1, https://workflowhub.eu/workflows/1562?version=1, https://workflowhub.eu/workflows/1567?version=1, https://workflowhub.eu/workflows/1571?version=1, https://workflowhub.eu/workflows/1575?version=1, https://workflowhub.eu/workflows/1601?version=1, https://workflowhub.eu/workflows/1623?version=1, https://workflowhub.eu/workflows/1632?version=1, https://workflowhub.eu/workflows/1638?version=1, https://workflowhub.eu/workflows/1696?version=1, https://workflowhub.eu/workflows/1718?version=1, https://workflowhub.eu/workflows/354?version=1, https://workflowhub.eu/workflows/403?version=9, https://workflowhub.eu/workflows/439?version=3, https://workflowhub.eu/workflows/53?version=1, https://workflowhub.eu/workflows/607?version=1, https://workflowhub.eu/workflows/629?version=1, https://workflowhub.eu/workflows/789?version=1, https://workflowhub.eu/workflows/794?version=2 |
assembly/ecoli_comparison, climate/climate-101, data-science/data-manipulation-olympics, digital-humanities/text_mining_chinese, ecology/PAMPA-toolsuite-tutorial, epigenetics/cut_and_run, galaxy-interface/workflow-reports, introduction/data-manipulation-olympics, introduction/galaxy-intro-101, introduction/galaxy-intro-101-everyone, introduction/galaxy-reproduce, microbiome/nanopore-16S-metagenomics, proteomics/maxquant-msstats-dda-lfq, single-cell/bulk-deconvolution-evaluate, single-cell/bulk-music-2-preparescref, single-cell/scrna-case_monocle3-trajectories, single-cell/scrna-data-ingest, single-cell/scrna-raceid, single-cell/scrna-scanpy-pbmc3k, transcriptomics/rna-seq-viz-with-heatmap2, variant-analysis/pox-tiled-amplicon, variant-analysis/sars-cov-2-variant-discovery |
|
decontam |
decontam |
Removes decontamination features (ASVs/OTUs) using control samples |
2024-09-13 |
https://github.com/benjjneb/decontam |
1.22.0 |
bioconductor-decontam |
1.26.0 |
To update |
Metagenomics |
Classification |
Classification |
Metagenomics, Microbial ecology, Sequencing |
Metagenomics, Microbial ecology, Sequencing |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontam |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/decontam |
decontam |
decontam |
Simple statistical identification of contaminating sequence features in marker-gene or metagenomics data. Works on any kind of feature derived from environmental sequencing data. Requires DNA quantitation data or sequenced negative control samples. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
https://usegalaxy.eu/published/workflow?id=466bdd8ba7b67264 |
|
|
decontaminator |
decontaminator |
Deep Learning method for novel virus detection in sequencing data |
2023-01-09 |
https://github.com/cbib/decontaminator |
1.0.0 |
numpy |
|
To update |
Machine Learning |
Filtering |
Filtering |
Metagenomics |
Metagenomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/decontaminator |
decontaminator |
decontaminator |
Decontaminator is a deep learning helping tool that filters out phage or fungi contigs from plant virome RNAseq assemblies. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
34 |
34 |
136 |
136 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
136 |
136 |
34 |
34 |
|
|
|
deeparg |
deeparg_predict, deeparg_short_reads |
A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes |
2024-10-07 |
https://github.com/gaarangoa/deeparg |
1.0.4 |
deeparg |
1.0.4 |
Up-to-date |
Sequence Analysis |
Antimicrobial resistance prediction, Antimicrobial resistance prediction |
Antimicrobial resistance prediction, Antimicrobial resistance prediction |
Microbiology |
Microbiology |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/deeparg |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/deeparg |
deeparg |
DeepARG |
A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes. |
|
0 |
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
deepmicro |
deepmicro |
Representation learning and classification framework |
2023-03-16 |
https://github.com/paulzierep/DeepMicro |
1.4 |
deepmicro |
1.4 |
Up-to-date |
Machine Learning |
Essential dynamics, Splitting, Community profiling |
Essential dynamics, Splitting |
Microbial ecology, Machine learning, Pathology, Public health and epidemiology, Allergy, clinical immunology and immunotherapeutics |
Microbial ecology, Machine learning, Pathology, Public health and epidemiology, Allergy, clinical immunology and immunotherapeutics |
iuc |
https://github.com/paulzierep/DeepMicro |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/deepmicro |
DeepMicro |
DeepMicro |
Deep representation learning for disease prediction based on microbiome data.DeepMicro is a deep representation learning framework exploiting various autoencoders to learn robust low-dimensional representations from high-dimensional data and training classification models based on the learned representation. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
8 |
8 |
559 |
559 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
559 |
559 |
8 |
8 |
|
|
|
deepsig |
deepsig |
Predictor of signal peptides in proteins based on deep learning |
2023-04-28 |
https://github.com/BolognaBiocomp/deepsig |
1.2.5 |
deepsig |
1.2.5 |
Up-to-date |
Genome annotation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepsig |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/deepsig |
|
|
|
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
83 |
83 |
173 |
173 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
5 |
9 |
9 |
182 |
182 |
88 |
88 |
https://usegalaxy.eu/published/workflow?id=a018307be3563f28 |
|
|
deepvariant |
deepvariant |
DeepVariant is a deep learning-based variant caller |
2021-09-06 |
https://github.com/google/deepvariant |
1.5.0 |
|
|
To update |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/deepvariant |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
401 |
401 |
4137 |
4137 |
599 |
599 |
4146 |
4146 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8283 |
8283 |
1000 |
1000 |
https://usegalaxy.org/published/workflow?id=39753cc73284963f, https://usegalaxy.org/published/workflow?id=b1a98a2d5ebda1c5, https://usegalaxy.org/published/workflow?id=e7586d70715207b5 |
|
|
deg_annotate |
deg_annotate |
Annotate DESeq2/DEXSeq output tables |
2018-11-22 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/deg_annotate |
1.1.0+galaxy1 |
bedtools |
2.31.1 |
To update |
Transcriptomics, Single Cell |
RNA-Seq analysis, Gene functional annotation |
RNA-Seq analysis, Gene functional annotation |
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/deg_annotate |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/deg_annotate |
deg_annotate |
DEG Annotate |
This tool appends the output table of DESeq2 or DEXSeq with gene symbols, biotypes, positions etc. The information you want to add is configurable. This information should present in the input GTF/GFF file as attributes of feature you choose. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
4482 |
4695 |
24756 |
25630 |
6076 |
6076 |
37060 |
37060 |
905 |
905 |
4573 |
4573 |
146 |
146 |
571 |
571 |
67834 |
66960 |
11822 |
11609 |
https://dev.workflowhub.eu/workflows/1326?version=3, https://usegalaxy.eu/published/workflow?id=63964ba7d9edce74, https://usegalaxy.eu/published/workflow?id=81f1927bfe3ffea1, https://usegalaxy.eu/published/workflow?id=95c4d5549e820d88, https://usegalaxy.eu/published/workflow?id=a9469155eee12ff1, https://usegalaxy.eu/published/workflow?id=c5e6047b3b256b06, https://usegalaxy.eu/published/workflow?id=ccef778cfd9024d1, https://usegalaxy.eu/published/workflow?id=e764c594f070f107, https://usegalaxy.eu/published/workflow?id=e7e26967cf6cb8d8, https://usegalaxy.eu/published/workflow?id=f58526da1fd68108, https://usegalaxy.org.au/published/workflow?id=000cdc969e9f0886, https://usegalaxy.org.au/published/workflow?id=01997cb92a2ce2d5, https://usegalaxy.org.au/published/workflow?id=02b8d033d9b1fa05, https://usegalaxy.org.au/published/workflow?id=04ab43fb3e7840ef, https://usegalaxy.org.au/published/workflow?id=05b17b9d70c1db8b, https://usegalaxy.org.au/published/workflow?id=0614f24ebeb680de, https://usegalaxy.org.au/published/workflow?id=068f85b8b137bfd7, https://usegalaxy.org.au/published/workflow?id=0c567180448d8774, https://usegalaxy.org.au/published/workflow?id=0cfc1408fd9ea4e7, https://usegalaxy.org.au/published/workflow?id=0d1db28665d19bda, https://usegalaxy.org.au/published/workflow?id=10acf4f497172400, https://usegalaxy.org.au/published/workflow?id=114fb9589bb9db92, https://usegalaxy.org.au/published/workflow?id=14184bc2580a131f, https://usegalaxy.org.au/published/workflow?id=19315e6573c58239, https://usegalaxy.org.au/published/workflow?id=1c886f008a36b0b8, https://usegalaxy.org.au/published/workflow?id=20e5e6b233ffb951, https://usegalaxy.org.au/published/workflow?id=210ca013cc1cf185, https://usegalaxy.org.au/published/workflow?id=25ac9b4f2e39af97, https://usegalaxy.org.au/published/workflow?id=28705b86e0595ded, https://usegalaxy.org.au/published/workflow?id=2999a1891ffe201b, https://usegalaxy.org.au/published/workflow?id=2a0046582f5f15a1, https://usegalaxy.org.au/published/workflow?id=2c58509f80897972, https://usegalaxy.org.au/published/workflow?id=2cef9a1633e0a067, https://usegalaxy.org.au/published/workflow?id=2f7c0e3221cbca2f, https://usegalaxy.org.au/published/workflow?id=301fdb29c513ffbe, https://usegalaxy.org.au/published/workflow?id=30b2cd025e0300da, https://usegalaxy.org.au/published/workflow?id=31449596b22f81f4, https://usegalaxy.org.au/published/workflow?id=35384818ee1cbac2, https://usegalaxy.org.au/published/workflow?id=374311292d72c9f9, https://usegalaxy.org.au/published/workflow?id=383ce49fa7a367e9, https://usegalaxy.org.au/published/workflow?id=39d56981a6854d82, https://usegalaxy.org.au/published/workflow?id=3bc45aaed5da1058, https://usegalaxy.org.au/published/workflow?id=3c727d5cd349a846, https://usegalaxy.org.au/published/workflow?id=3ef07022656067b1, https://usegalaxy.org.au/published/workflow?id=410d0d19b6589c78, https://usegalaxy.org.au/published/workflow?id=42305ed876d19d08, https://usegalaxy.org.au/published/workflow?id=45c8789533c45abf, https://usegalaxy.org.au/published/workflow?id=4e096a68187ce652, https://usegalaxy.org.au/published/workflow?id=4efed79608f85604, https://usegalaxy.org.au/published/workflow?id=4f2818b6620037af, https://usegalaxy.org.au/published/workflow?id=4f562265cbb14cd6, https://usegalaxy.org.au/published/workflow?id=525612313de7591e, https://usegalaxy.org.au/published/workflow?id=5314a7a4732a0ef1, https://usegalaxy.org.au/published/workflow?id=544cb12a16f283b8, https://usegalaxy.org.au/published/workflow?id=5490661d0153962b, https://usegalaxy.org.au/published/workflow?id=5779029c2c13c75a, https://usegalaxy.org.au/published/workflow?id=5a4e49ef8693d7c4, https://usegalaxy.org.au/published/workflow?id=5cbee52cf03b6f9a, https://usegalaxy.org.au/published/workflow?id=5ea74382fb77eb10, https://usegalaxy.org.au/published/workflow?id=608f3ad8f485e7a8, https://usegalaxy.org.au/published/workflow?id=6204bbcfe56931eb, https://usegalaxy.org.au/published/workflow?id=625f3c52832b0591, https://usegalaxy.org.au/published/workflow?id=6448b82959076a29, https://usegalaxy.org.au/published/workflow?id=6469ade8f6f7c718, https://usegalaxy.org.au/published/workflow?id=66b5c7dd3e58193f, https://usegalaxy.org.au/published/workflow?id=67191ea9fe977e08, https://usegalaxy.org.au/published/workflow?id=69233fb6edfcdde9, https://usegalaxy.org.au/published/workflow?id=6cdbcd1f667d0f16, https://usegalaxy.org.au/published/workflow?id=6f0801fecbba5d3f, https://usegalaxy.org.au/published/workflow?id=71bad95f72c9f30d, https://usegalaxy.org.au/published/workflow?id=721e528c2ae6d8ee, https://usegalaxy.org.au/published/workflow?id=74186b006665daf8, https://usegalaxy.org.au/published/workflow?id=75113a1b41904d2a, https://usegalaxy.org.au/published/workflow?id=79522a1f7b0c53cb, https://usegalaxy.org.au/published/workflow?id=7c866ed4a3552d0d, https://usegalaxy.org.au/published/workflow?id=7cd1acb1da823cdc, https://usegalaxy.org.au/published/workflow?id=7ea616c652d08fb6, https://usegalaxy.org.au/published/workflow?id=7ef245f5ae3b916d, https://usegalaxy.org.au/published/workflow?id=7febc6ac6f106e57, https://usegalaxy.org.au/published/workflow?id=83680c1c6dffb05b, https://usegalaxy.org.au/published/workflow?id=83a535840b388980, https://usegalaxy.org.au/published/workflow?id=8483ae422665a6c1, https://usegalaxy.org.au/published/workflow?id=8483e8d3e8d0ddc9, https://usegalaxy.org.au/published/workflow?id=84a8eb379440656e, https://usegalaxy.org.au/published/workflow?id=8597166abda0a375, https://usegalaxy.org.au/published/workflow?id=85aede91db0122e4, https://usegalaxy.org.au/published/workflow?id=897dfa78c3b25356, https://usegalaxy.org.au/published/workflow?id=8b8a5b50f2edc72c, https://usegalaxy.org.au/published/workflow?id=8cab31db0bd3ff52, https://usegalaxy.org.au/published/workflow?id=8d196c8c62530dc0, https://usegalaxy.org.au/published/workflow?id=8eab5e2b2c683076, https://usegalaxy.org.au/published/workflow?id=8fb691706f47527a, https://usegalaxy.org.au/published/workflow?id=91cfd96f697ba034, https://usegalaxy.org.au/published/workflow?id=95a9070469a895c3, https://usegalaxy.org.au/published/workflow?id=95efb414f5984735, https://usegalaxy.org.au/published/workflow?id=975ddb0eb436f1fd, https://usegalaxy.org.au/published/workflow?id=97628b0604d5ec77, https://usegalaxy.org.au/published/workflow?id=9988bc2402f32dc1, https://usegalaxy.org.au/published/workflow?id=9b1afa59c087eacd, https://usegalaxy.org.au/published/workflow?id=9df67170c9260539, https://usegalaxy.org.au/published/workflow?id=9e8d9b7055b7c863, https://usegalaxy.org.au/published/workflow?id=9ec9fe2715d7cfdc, https://usegalaxy.org.au/published/workflow?id=a1c59e9f5c7327d2, https://usegalaxy.org.au/published/workflow?id=a69db7f914c06407, https://usegalaxy.org.au/published/workflow?id=a7346c25dfdf2e3e, https://usegalaxy.org.au/published/workflow?id=a7726d18d2a5fcf2, https://usegalaxy.org.au/published/workflow?id=a7a30d970584f9ac, https://usegalaxy.org.au/published/workflow?id=a7d1cf2bb636e695, https://usegalaxy.org.au/published/workflow?id=a9e59d38c6c710bc, https://usegalaxy.org.au/published/workflow?id=a9fa6101f1fb13e2, https://usegalaxy.org.au/published/workflow?id=aaaf580eb00459b6, https://usegalaxy.org.au/published/workflow?id=aae07f802002fdd0, https://usegalaxy.org.au/published/workflow?id=ad13b4a61e8987b1, https://usegalaxy.org.au/published/workflow?id=ae6892f1df022097, https://usegalaxy.org.au/published/workflow?id=ae773dfaa074cb72, https://usegalaxy.org.au/published/workflow?id=af3f40cba4d7afa6, https://usegalaxy.org.au/published/workflow?id=af990cca72794142, https://usegalaxy.org.au/published/workflow?id=afd9a8bbc07f9c3f, https://usegalaxy.org.au/published/workflow?id=b57bf134896c30ea, https://usegalaxy.org.au/published/workflow?id=b6db525b1b73394b, https://usegalaxy.org.au/published/workflow?id=bda98c5a0ea70dd0, https://usegalaxy.org.au/published/workflow?id=c1a0a3888d9ee3ac, https://usegalaxy.org.au/published/workflow?id=c296b3848708f6f1, https://usegalaxy.org.au/published/workflow?id=c2e5a43356042b30, https://usegalaxy.org.au/published/workflow?id=c3b3717502ff6f76, https://usegalaxy.org.au/published/workflow?id=c3bb21f20a3ce689, https://usegalaxy.org.au/published/workflow?id=c3e198bc2146b4ad, https://usegalaxy.org.au/published/workflow?id=c65a5af6c0383f8c, https://usegalaxy.org.au/published/workflow?id=ce7f6a1c824920e2, https://usegalaxy.org.au/published/workflow?id=cef68481b305a516, https://usegalaxy.org.au/published/workflow?id=d126940d33e63036, https://usegalaxy.org.au/published/workflow?id=d5717afa6cce6fb4, https://usegalaxy.org.au/published/workflow?id=d5ecfdbc04b24227, https://usegalaxy.org.au/published/workflow?id=db0bc7357c181222, https://usegalaxy.org.au/published/workflow?id=db3370a412c4de78, https://usegalaxy.org.au/published/workflow?id=dce29c35dfac48b1, https://usegalaxy.org.au/published/workflow?id=de1c04a2caf70647, https://usegalaxy.org.au/published/workflow?id=e08ef6b519f5fba0, https://usegalaxy.org.au/published/workflow?id=e1fd89e7248b6661, https://usegalaxy.org.au/published/workflow?id=e3cda847fe727b61, https://usegalaxy.org.au/published/workflow?id=e4ddf33ee5b5e259, https://usegalaxy.org.au/published/workflow?id=e52a3479c8216291, https://usegalaxy.org.au/published/workflow?id=e826584d78b69467, https://usegalaxy.org.au/published/workflow?id=e8d3651c07ce0bec, https://usegalaxy.org.au/published/workflow?id=eb3a4535204383fa, https://usegalaxy.org.au/published/workflow?id=ec79c2fab8eac15d, https://usegalaxy.org.au/published/workflow?id=ed2f72e3537e8a4a, https://usegalaxy.org.au/published/workflow?id=f0ced9a5d34b2aff, https://usegalaxy.org.au/published/workflow?id=f19d63d7c9a48160, https://usegalaxy.org.au/published/workflow?id=f268c181a47d0cab, https://usegalaxy.org.au/published/workflow?id=f5c0b0bc5e023e42, https://usegalaxy.org.au/published/workflow?id=f944f2d3fbd1f062, https://usegalaxy.org.au/published/workflow?id=fc64a77321752a3c, https://usegalaxy.org.au/published/workflow?id=fc6f8afdee980f0e, https://usegalaxy.org.au/published/workflow?id=fd8fb237f8dc24c3, https://usegalaxy.org.au/published/workflow?id=fe1de81a97578368, https://usegalaxy.org.au/published/workflow?id=fe893d72526eba71, https://usegalaxy.org.au/published/workflow?id=ff42213dda7d3e59, https://usegalaxy.org/published/workflow?id=098375608a1223aa, https://usegalaxy.org/published/workflow?id=19fcce20ecaf2ef6, https://usegalaxy.org/published/workflow?id=25cdc47baba556c5, https://usegalaxy.org/published/workflow?id=27144c7e44d3f56b, https://usegalaxy.org/published/workflow?id=35209d092e636cd8, https://usegalaxy.org/published/workflow?id=40a65b5bc1dcc0b4, https://usegalaxy.org/published/workflow?id=4c840284d2984fa0, https://usegalaxy.org/published/workflow?id=667493d318b86b7d, https://usegalaxy.org/published/workflow?id=68832752b883c226, https://usegalaxy.org/published/workflow?id=abf1aec0f3d48d03, https://usegalaxy.org/published/workflow?id=b0e19e7315b64c87, https://usegalaxy.org/published/workflow?id=b77fa73d4fbde131, https://usegalaxy.org/published/workflow?id=dcc7c5fdef8780fd, https://usegalaxy.org/published/workflow?id=e40c2e7f6b73fb11, https://usegalaxy.org/published/workflow?id=e790587f0a61fbad, https://usegalaxy.org/published/workflow?id=eb4b32fcf4a9f64a, https://workflowhub.eu/workflows/1201?version=4, https://workflowhub.eu/workflows/1708?version=1, https://workflowhub.eu/workflows/1713?version=1 |
transcriptomics/ref-based, transcriptomics/rna-seq-analysis-clustering-viz |
|
delly |
delly_call, delly_classify, delly_cnv, delly_filter, delly_lr, delly_merge |
Delly is an integrated structural variant (SV) prediction method that can discover, genotype and visualize deletions, tandem duplications, inversions and translocations at single-nucleotide resolution in short-read massively parallel sequencing data. It uses paired-ends, split-reads and read-depth to sensitively and accurately delineate genomic rearrangements throughout the genome. |
2020-09-28 |
https://github.com/dellytools/delly |
0.9.1 |
delly |
1.5.0 |
To update |
Variant Analysis |
Indel detection, Structural variation detection, Variant calling, Genotyping, Genetic variation analysis |
Indel detection, Structural variation detection, Genotyping |
DNA structural variation, Sequencing, Pathology, Genomics, Genetic variation, Bioinformatics, Population genomics, Rare diseases |
Sequencing, Genetic variation, Bioinformatics, Population genomics, Rare diseases |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/delly |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/delly |
delly2 |
Delly2 |
Integrated structural variant prediction method that can discover, genotype and visualize deletions, tandem duplications, inversions and translocations at single-nucleotide resolution in short-read massively parallel sequencing data. It uses paired-ends and split-reads to sensitively and accurately delineate genomic rearrangements throughout the genome. Structural variants can be visualized using Delly-maze and Delly-suave. |
|
0 |
0 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
0 |
0 |
0 |
0 |
6 |
6 |
0 |
0 |
155 |
155 |
1823 |
1823 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1823 |
1823 |
155 |
155 |
|
|
|
deseq2 |
deseq2 |
Differential gene expression analysis based on the negative binomial distribution |
2014-12-03 |
https://www.bioconductor.org/packages/release/bioc/html/DESeq2.html |
2.11.40.8 |
bioconductor-deseq2 |
1.46.0 |
To update |
Transcriptomics, RNA, Statistics, Single Cell |
Differential gene expression analysis, RNA-Seq analysis |
Differential gene expression analysis, RNA-Seq analysis |
RNA-Seq |
RNA-Seq |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/deseq2 |
DESeq2 |
DESeq2 |
R/Bioconductor package for differential gene expression analysis based on the negative binomial distribution. Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
12207 |
13832 |
103247 |
118972 |
26210 |
34723 |
188764 |
263515 |
2634 |
3047 |
18883 |
21378 |
701 |
701 |
3584 |
3584 |
407449 |
314478 |
52303 |
41752 |
https://dev.workflowhub.eu/workflows/1279?version=1, https://dev.workflowhub.eu/workflows/1303?version=1, https://dev.workflowhub.eu/workflows/1318?version=2, https://dev.workflowhub.eu/workflows/1319?version=2, https://dev.workflowhub.eu/workflows/1326?version=3, https://usegalaxy.eu/published/workflow?id=02a212cc9f134570, https://usegalaxy.eu/published/workflow?id=0de150b19102cb7e, https://usegalaxy.eu/published/workflow?id=0fa523529c4f73cf, https://usegalaxy.eu/published/workflow?id=12c80c5b5e2305d8, https://usegalaxy.eu/published/workflow?id=17ad465d9515cd25, https://usegalaxy.eu/published/workflow?id=1fe02012c96b731f, https://usegalaxy.eu/published/workflow?id=1ffc058273ab357e, https://usegalaxy.eu/published/workflow?id=20ada53472782c9b, https://usegalaxy.eu/published/workflow?id=2287afbf248d9c89, https://usegalaxy.eu/published/workflow?id=250e6058f160825f, https://usegalaxy.eu/published/workflow?id=2d2d0c2231babc50, https://usegalaxy.eu/published/workflow?id=350d7e6976e15d30, https://usegalaxy.eu/published/workflow?id=5b46c8533cd95447, https://usegalaxy.eu/published/workflow?id=5c8186f1e342c522, https://usegalaxy.eu/published/workflow?id=63964ba7d9edce74, https://usegalaxy.eu/published/workflow?id=68e8042f11d5a3fd, https://usegalaxy.eu/published/workflow?id=7136ce9f18c74853, https://usegalaxy.eu/published/workflow?id=81f1927bfe3ffea1, https://usegalaxy.eu/published/workflow?id=82ef590b5821805d, https://usegalaxy.eu/published/workflow?id=8b1e2fe9f4a07de0, https://usegalaxy.eu/published/workflow?id=95c4d5549e820d88, https://usegalaxy.eu/published/workflow?id=9c7a218993788493, https://usegalaxy.eu/published/workflow?id=9e01e24c5e749365, https://usegalaxy.eu/published/workflow?id=a9469155eee12ff1, https://usegalaxy.eu/published/workflow?id=bc79a9f797334b01, https://usegalaxy.eu/published/workflow?id=c5e6047b3b256b06, https://usegalaxy.eu/published/workflow?id=ca286c2fdc71e960, https://usegalaxy.eu/published/workflow?id=ccef778cfd9024d1, https://usegalaxy.eu/published/workflow?id=d41b52a15ba56f54, https://usegalaxy.eu/published/workflow?id=d6f7e86d52d43555, https://usegalaxy.eu/published/workflow?id=d72edb9f8c529f47, https://usegalaxy.eu/published/workflow?id=e764c594f070f107, https://usegalaxy.eu/published/workflow?id=e7e26967cf6cb8d8, https://usegalaxy.eu/published/workflow?id=e8202b7b6338005d, https://usegalaxy.eu/published/workflow?id=f026c4b8341ff94c, https://usegalaxy.eu/published/workflow?id=f33b5135ee99e0dc, https://usegalaxy.eu/published/workflow?id=f58526da1fd68108, https://usegalaxy.fr/published/workflow?id=ff14dc4005e92cfd, https://usegalaxy.org.au/published/workflow?id=000cdc969e9f0886, https://usegalaxy.org.au/published/workflow?id=01997cb92a2ce2d5, https://usegalaxy.org.au/published/workflow?id=02b8d033d9b1fa05, https://usegalaxy.org.au/published/workflow?id=046a1c600a6b77c2, https://usegalaxy.org.au/published/workflow?id=04ab43fb3e7840ef, https://usegalaxy.org.au/published/workflow?id=05950987aa2eba5b, https://usegalaxy.org.au/published/workflow?id=05b17b9d70c1db8b, https://usegalaxy.org.au/published/workflow?id=0614f24ebeb680de, https://usegalaxy.org.au/published/workflow?id=068f85b8b137bfd7, https://usegalaxy.org.au/published/workflow?id=07c97b9e59c0218f, https://usegalaxy.org.au/published/workflow?id=0c567180448d8774, https://usegalaxy.org.au/published/workflow?id=0cfc1408fd9ea4e7, https://usegalaxy.org.au/published/workflow?id=0d1db28665d19bda, https://usegalaxy.org.au/published/workflow?id=0fc7c14c4d1ac8f5, https://usegalaxy.org.au/published/workflow?id=10acf4f497172400, https://usegalaxy.org.au/published/workflow?id=114fb9589bb9db92, https://usegalaxy.org.au/published/workflow?id=13a2c5bd07705985, https://usegalaxy.org.au/published/workflow?id=14184bc2580a131f, https://usegalaxy.org.au/published/workflow?id=16f4846b4d6bc155, https://usegalaxy.org.au/published/workflow?id=19315e6573c58239, https://usegalaxy.org.au/published/workflow?id=1ad81f95ace878ea, https://usegalaxy.org.au/published/workflow?id=1c886f008a36b0b8, https://usegalaxy.org.au/published/workflow?id=20e5e6b233ffb951, https://usegalaxy.org.au/published/workflow?id=210ca013cc1cf185, https://usegalaxy.org.au/published/workflow?id=25ac9b4f2e39af97, https://usegalaxy.org.au/published/workflow?id=28705b86e0595ded, https://usegalaxy.org.au/published/workflow?id=2999a1891ffe201b, https://usegalaxy.org.au/published/workflow?id=2a0046582f5f15a1, https://usegalaxy.org.au/published/workflow?id=2c58509f80897972, https://usegalaxy.org.au/published/workflow?id=2cef9a1633e0a067, https://usegalaxy.org.au/published/workflow?id=2f7c0e3221cbca2f, https://usegalaxy.org.au/published/workflow?id=301fdb29c513ffbe, https://usegalaxy.org.au/published/workflow?id=30b2cd025e0300da, https://usegalaxy.org.au/published/workflow?id=31449596b22f81f4, https://usegalaxy.org.au/published/workflow?id=35384818ee1cbac2, https://usegalaxy.org.au/published/workflow?id=374311292d72c9f9, https://usegalaxy.org.au/published/workflow?id=383ce49fa7a367e9, https://usegalaxy.org.au/published/workflow?id=39d56981a6854d82, https://usegalaxy.org.au/published/workflow?id=3bc45aaed5da1058, https://usegalaxy.org.au/published/workflow?id=3c727d5cd349a846, https://usegalaxy.org.au/published/workflow?id=3ce9dc804780e4a1, https://usegalaxy.org.au/published/workflow?id=3ef07022656067b1, https://usegalaxy.org.au/published/workflow?id=3f45685df9b9e792, https://usegalaxy.org.au/published/workflow?id=410d0d19b6589c78, https://usegalaxy.org.au/published/workflow?id=421adea2f259ec26, https://usegalaxy.org.au/published/workflow?id=42305ed876d19d08, https://usegalaxy.org.au/published/workflow?id=45c8789533c45abf, https://usegalaxy.org.au/published/workflow?id=4e096a68187ce652, https://usegalaxy.org.au/published/workflow?id=4efed79608f85604, https://usegalaxy.org.au/published/workflow?id=4f2818b6620037af, https://usegalaxy.org.au/published/workflow?id=4f562265cbb14cd6, https://usegalaxy.org.au/published/workflow?id=525612313de7591e, https://usegalaxy.org.au/published/workflow?id=53010c2f1f207429, https://usegalaxy.org.au/published/workflow?id=5314a7a4732a0ef1, https://usegalaxy.org.au/published/workflow?id=544cb12a16f283b8, https://usegalaxy.org.au/published/workflow?id=5490661d0153962b, https://usegalaxy.org.au/published/workflow?id=56599572e0364e2a, https://usegalaxy.org.au/published/workflow?id=5779029c2c13c75a, https://usegalaxy.org.au/published/workflow?id=5a4e49ef8693d7c4, https://usegalaxy.org.au/published/workflow?id=5be983b903469f07, https://usegalaxy.org.au/published/workflow?id=5cbee52cf03b6f9a, https://usegalaxy.org.au/published/workflow?id=5ce00d3eab862f4e, https://usegalaxy.org.au/published/workflow?id=5ea74382fb77eb10, https://usegalaxy.org.au/published/workflow?id=608f3ad8f485e7a8, https://usegalaxy.org.au/published/workflow?id=6204bbcfe56931eb, https://usegalaxy.org.au/published/workflow?id=625f3c52832b0591, https://usegalaxy.org.au/published/workflow?id=6448b82959076a29, https://usegalaxy.org.au/published/workflow?id=6469ade8f6f7c718, https://usegalaxy.org.au/published/workflow?id=66b5c7dd3e58193f, https://usegalaxy.org.au/published/workflow?id=67191ea9fe977e08, https://usegalaxy.org.au/published/workflow?id=677ef3322366c953, https://usegalaxy.org.au/published/workflow?id=69233fb6edfcdde9, https://usegalaxy.org.au/published/workflow?id=6a161c87d19a543c, https://usegalaxy.org.au/published/workflow?id=6b34c95a247d15e3, https://usegalaxy.org.au/published/workflow?id=6cdbcd1f667d0f16, https://usegalaxy.org.au/published/workflow?id=6f0801fecbba5d3f, https://usegalaxy.org.au/published/workflow?id=71bad95f72c9f30d, https://usegalaxy.org.au/published/workflow?id=721e528c2ae6d8ee, https://usegalaxy.org.au/published/workflow?id=73ff1aa9acc0ad2a, https://usegalaxy.org.au/published/workflow?id=74186b006665daf8, https://usegalaxy.org.au/published/workflow?id=75113a1b41904d2a, https://usegalaxy.org.au/published/workflow?id=76323f103844f75b, https://usegalaxy.org.au/published/workflow?id=79522a1f7b0c53cb, https://usegalaxy.org.au/published/workflow?id=7ad277dd448e57b3, https://usegalaxy.org.au/published/workflow?id=7becafd394472dfb, https://usegalaxy.org.au/published/workflow?id=7c866ed4a3552d0d, https://usegalaxy.org.au/published/workflow?id=7cd1acb1da823cdc, https://usegalaxy.org.au/published/workflow?id=7ea616c652d08fb6, https://usegalaxy.org.au/published/workflow?id=7ef245f5ae3b916d, https://usegalaxy.org.au/published/workflow?id=7febc6ac6f106e57, https://usegalaxy.org.au/published/workflow?id=83680c1c6dffb05b, https://usegalaxy.org.au/published/workflow?id=83a535840b388980, https://usegalaxy.org.au/published/workflow?id=8483ae422665a6c1, https://usegalaxy.org.au/published/workflow?id=8483e8d3e8d0ddc9, https://usegalaxy.org.au/published/workflow?id=84a8eb379440656e, https://usegalaxy.org.au/published/workflow?id=8597166abda0a375, https://usegalaxy.org.au/published/workflow?id=85aede91db0122e4, https://usegalaxy.org.au/published/workflow?id=863eee1b041b6c58, https://usegalaxy.org.au/published/workflow?id=879d4fb110a61f7a, https://usegalaxy.org.au/published/workflow?id=897dfa78c3b25356, https://usegalaxy.org.au/published/workflow?id=897e9d7432d231e9, https://usegalaxy.org.au/published/workflow?id=8b8a5b50f2edc72c, https://usegalaxy.org.au/published/workflow?id=8c40b4a911517cc5, https://usegalaxy.org.au/published/workflow?id=8cab31db0bd3ff52, https://usegalaxy.org.au/published/workflow?id=8d196c8c62530dc0, https://usegalaxy.org.au/published/workflow?id=8eab5e2b2c683076, https://usegalaxy.org.au/published/workflow?id=8fb691706f47527a, https://usegalaxy.org.au/published/workflow?id=91cfd96f697ba034, https://usegalaxy.org.au/published/workflow?id=925c167abd5610ae, https://usegalaxy.org.au/published/workflow?id=95a9070469a895c3, https://usegalaxy.org.au/published/workflow?id=95efb414f5984735, https://usegalaxy.org.au/published/workflow?id=975ddb0eb436f1fd, https://usegalaxy.org.au/published/workflow?id=97628b0604d5ec77, https://usegalaxy.org.au/published/workflow?id=978953f492b2b914, https://usegalaxy.org.au/published/workflow?id=981d7b02416b7734, https://usegalaxy.org.au/published/workflow?id=9898348d95033af2, https://usegalaxy.org.au/published/workflow?id=9988bc2402f32dc1, https://usegalaxy.org.au/published/workflow?id=9b1afa59c087eacd, https://usegalaxy.org.au/published/workflow?id=9df67170c9260539, https://usegalaxy.org.au/published/workflow?id=9e8d9b7055b7c863, https://usegalaxy.org.au/published/workflow?id=9ec9fe2715d7cfdc, https://usegalaxy.org.au/published/workflow?id=a1c59e9f5c7327d2, https://usegalaxy.org.au/published/workflow?id=a69db7f914c06407, https://usegalaxy.org.au/published/workflow?id=a7346c25dfdf2e3e, https://usegalaxy.org.au/published/workflow?id=a7726d18d2a5fcf2, https://usegalaxy.org.au/published/workflow?id=a7a30d970584f9ac, https://usegalaxy.org.au/published/workflow?id=a7d1cf2bb636e695, https://usegalaxy.org.au/published/workflow?id=a9e59d38c6c710bc, https://usegalaxy.org.au/published/workflow?id=a9fa6101f1fb13e2, https://usegalaxy.org.au/published/workflow?id=aa94c77b720a2810, https://usegalaxy.org.au/published/workflow?id=aaaf580eb00459b6, https://usegalaxy.org.au/published/workflow?id=aae07f802002fdd0, https://usegalaxy.org.au/published/workflow?id=ad13b4a61e8987b1, https://usegalaxy.org.au/published/workflow?id=ae5dca8108d1a8a6, https://usegalaxy.org.au/published/workflow?id=ae6892f1df022097, https://usegalaxy.org.au/published/workflow?id=ae773dfaa074cb72, https://usegalaxy.org.au/published/workflow?id=aed93da6fd6e4e13, https://usegalaxy.org.au/published/workflow?id=af3f40cba4d7afa6, https://usegalaxy.org.au/published/workflow?id=af990cca72794142, https://usegalaxy.org.au/published/workflow?id=afd9a8bbc07f9c3f, https://usegalaxy.org.au/published/workflow?id=b57bf134896c30ea, https://usegalaxy.org.au/published/workflow?id=b6db525b1b73394b, https://usegalaxy.org.au/published/workflow?id=bda98c5a0ea70dd0, https://usegalaxy.org.au/published/workflow?id=c1a0a3888d9ee3ac, https://usegalaxy.org.au/published/workflow?id=c296b3848708f6f1, https://usegalaxy.org.au/published/workflow?id=c2e5a43356042b30, https://usegalaxy.org.au/published/workflow?id=c3b3717502ff6f76, https://usegalaxy.org.au/published/workflow?id=c3bb21f20a3ce689, https://usegalaxy.org.au/published/workflow?id=c3e198bc2146b4ad, https://usegalaxy.org.au/published/workflow?id=c65a5af6c0383f8c, https://usegalaxy.org.au/published/workflow?id=cb960edf95d2dc35, https://usegalaxy.org.au/published/workflow?id=ce7f6a1c824920e2, https://usegalaxy.org.au/published/workflow?id=cef4a514f35576e5, https://usegalaxy.org.au/published/workflow?id=cef68481b305a516, https://usegalaxy.org.au/published/workflow?id=d126940d33e63036, https://usegalaxy.org.au/published/workflow?id=d5717afa6cce6fb4, https://usegalaxy.org.au/published/workflow?id=d5ecfdbc04b24227, https://usegalaxy.org.au/published/workflow?id=d7a65f577fe5f16b, https://usegalaxy.org.au/published/workflow?id=db0bc7357c181222, https://usegalaxy.org.au/published/workflow?id=db3370a412c4de78, https://usegalaxy.org.au/published/workflow?id=dce29c35dfac48b1, https://usegalaxy.org.au/published/workflow?id=de1c04a2caf70647, https://usegalaxy.org.au/published/workflow?id=e08ef6b519f5fba0, https://usegalaxy.org.au/published/workflow?id=e1fd89e7248b6661, https://usegalaxy.org.au/published/workflow?id=e3cda847fe727b61, https://usegalaxy.org.au/published/workflow?id=e4ddf33ee5b5e259, https://usegalaxy.org.au/published/workflow?id=e52a3479c8216291, https://usegalaxy.org.au/published/workflow?id=e826584d78b69467, https://usegalaxy.org.au/published/workflow?id=e8d3651c07ce0bec, https://usegalaxy.org.au/published/workflow?id=eb3a4535204383fa, https://usegalaxy.org.au/published/workflow?id=ec79c2fab8eac15d, https://usegalaxy.org.au/published/workflow?id=ed2f72e3537e8a4a, https://usegalaxy.org.au/published/workflow?id=f0ced9a5d34b2aff, https://usegalaxy.org.au/published/workflow?id=f19d63d7c9a48160, https://usegalaxy.org.au/published/workflow?id=f268c181a47d0cab, https://usegalaxy.org.au/published/workflow?id=f5c0b0bc5e023e42, https://usegalaxy.org.au/published/workflow?id=f944f2d3fbd1f062, https://usegalaxy.org.au/published/workflow?id=fb644a9649f36f40, https://usegalaxy.org.au/published/workflow?id=fc64a77321752a3c, https://usegalaxy.org.au/published/workflow?id=fc6f8afdee980f0e, https://usegalaxy.org.au/published/workflow?id=fd477917a3d27f61, https://usegalaxy.org.au/published/workflow?id=fd8fb237f8dc24c3, https://usegalaxy.org.au/published/workflow?id=fe1de81a97578368, https://usegalaxy.org.au/published/workflow?id=fe893d72526eba71, https://usegalaxy.org.au/published/workflow?id=ff42213dda7d3e59, https://usegalaxy.org/published/workflow?id=030814e5329ea62d, https://usegalaxy.org/published/workflow?id=092be3cf6e40282c, https://usegalaxy.org/published/workflow?id=0930f955bdac93e8, https://usegalaxy.org/published/workflow?id=098375608a1223aa, https://usegalaxy.org/published/workflow?id=19fcce20ecaf2ef6, https://usegalaxy.org/published/workflow?id=1bd0d7ef0aca1363, https://usegalaxy.org/published/workflow?id=25cdc47baba556c5, https://usegalaxy.org/published/workflow?id=27144c7e44d3f56b, https://usegalaxy.org/published/workflow?id=2d50de9b95ad0808, https://usegalaxy.org/published/workflow?id=36a92f1f6d2212a4, https://usegalaxy.org/published/workflow?id=4061e061f659449b, https://usegalaxy.org/published/workflow?id=40a65b5bc1dcc0b4, https://usegalaxy.org/published/workflow?id=420a332da24fb9e9, https://usegalaxy.org/published/workflow?id=4c0785fe74ab0a24, https://usegalaxy.org/published/workflow?id=4c840284d2984fa0, https://usegalaxy.org/published/workflow?id=53834a5fb46ca0f6, https://usegalaxy.org/published/workflow?id=5a272f266a1fa4ac, https://usegalaxy.org/published/workflow?id=667493d318b86b7d, https://usegalaxy.org/published/workflow?id=68832752b883c226, https://usegalaxy.org/published/workflow?id=6dada297572d77bd, https://usegalaxy.org/published/workflow?id=7e81153760fb4c90, https://usegalaxy.org/published/workflow?id=82681bd5f059e39a, https://usegalaxy.org/published/workflow?id=8700f593a3d642f5, https://usegalaxy.org/published/workflow?id=9bace540b35b1e61, https://usegalaxy.org/published/workflow?id=9e74e3455e47c813, https://usegalaxy.org/published/workflow?id=a743746151101352, https://usegalaxy.org/published/workflow?id=a8ddab36010ed4c3, https://usegalaxy.org/published/workflow?id=aae5b6d9beb860ba, https://usegalaxy.org/published/workflow?id=abf1aec0f3d48d03, https://usegalaxy.org/published/workflow?id=ac8b74b911778fbc, https://usegalaxy.org/published/workflow?id=b0e19e7315b64c87, https://usegalaxy.org/published/workflow?id=b77fa73d4fbde131, https://usegalaxy.org/published/workflow?id=bc83c42b44c4b03f, https://usegalaxy.org/published/workflow?id=c8ee2da45b6889b9, https://usegalaxy.org/published/workflow?id=ce99c56e45d982cb, https://usegalaxy.org/published/workflow?id=cff93a6f24af5fee, https://usegalaxy.org/published/workflow?id=d2f7fd589a91124a, https://usegalaxy.org/published/workflow?id=d72e33effe07de02, https://usegalaxy.org/published/workflow?id=d761637d43ee0324, https://usegalaxy.org/published/workflow?id=d8afd017905d6702, https://usegalaxy.org/published/workflow?id=dab54002b3c0e351, https://usegalaxy.org/published/workflow?id=dcc7c5fdef8780fd, https://usegalaxy.org/published/workflow?id=dcf6f201b787d148, https://usegalaxy.org/published/workflow?id=dec0cf06fa059e65, https://usegalaxy.org/published/workflow?id=e40c2e7f6b73fb11, https://usegalaxy.org/published/workflow?id=e790587f0a61fbad, https://usegalaxy.org/published/workflow?id=eb01b539d17580c3, https://usegalaxy.org/published/workflow?id=eb4b32fcf4a9f64a, https://usegalaxy.org/published/workflow?id=fb903de4aa4d5090, https://workflowhub.eu/workflows/1201?version=4, https://workflowhub.eu/workflows/1676?version=1, https://workflowhub.eu/workflows/1677?version=1, https://workflowhub.eu/workflows/1685?version=1, https://workflowhub.eu/workflows/1708?version=1, https://workflowhub.eu/workflows/1713?version=1, https://workflowhub.eu/workflows/1717?version=1, https://workflowhub.eu/workflows/338?version=1, https://workflowhub.eu/workflows/412?version=1 |
transcriptomics/de-novo, transcriptomics/mirna-target-finder, transcriptomics/network-analysis-with-heinz, transcriptomics/ref-based, transcriptomics/rna-seq-analysis-clustering-viz, transcriptomics/srna |
|
dexseq |
dexseq, dexseq_count, plotdexseq |
Inference of differential exon usage in RNA-Seq |
2015-09-25 |
https://www.bioconductor.org/packages/release/bioc/html/DEXSeq.html |
1.48.0 |
bioconductor-dexseq |
1.52.0 |
To update |
Transcriptomics, RNA, Statistics, Single Cell |
Enrichment analysis, Exonic splicing enhancer prediction |
Enrichment analysis, Exonic splicing enhancer prediction |
RNA-Seq |
RNA-Seq |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/dexseq |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/dexseq |
dexseq |
DEXSeq |
The package is focused on finding differential exon usage using RNA-seq exon counts between samples with different experimental designs. It provides functions that allows the user to make the necessary statistical tests based on a model that uses the negative binomial distribution to estimate the variance between biological replicates and generalized linear models for testing. The package also provides functions for the visualization and exploration of the results. |
|
3 |
3 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
3 |
0 |
279 |
458 |
14762 |
17581 |
715 |
1589 |
17846 |
29794 |
84 |
99 |
3836 |
4518 |
8 |
8 |
95 |
95 |
51988 |
36539 |
2154 |
1086 |
https://usegalaxy.org/published/workflow?id=82681bd5f059e39a |
transcriptomics/ref-based |
|
diamond |
bg_diamond, bg_diamond_makedb, bg_diamond_view |
DIAMOND is a new alignment tool for aligning short DNA sequencing reads to a protein reference database such as NCBI-NR. |
2021-03-21 |
https://github.com/bbuchfink/diamond |
2.1.13 |
diamond |
2.1.13 |
Up-to-date |
Sequence Analysis |
Sequence alignment analysis |
Sequence alignment analysis |
Sequence analysis, Proteins |
Sequence analysis, Proteins |
bgruening |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/diamond |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/diamond |
diamond |
Diamond |
Sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for protein-protein search as well as DNA-protein search on short reads and longer sequences including contigs and assemblies, providing a speedup of BLAST ranging up to x20,000. |
|
3 |
3 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
3 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
0 |
1299 |
1346 |
64013 |
64783 |
642 |
971 |
23835 |
30041 |
376 |
376 |
64629 |
64629 |
117 |
117 |
2055 |
2073 |
161526 |
154532 |
2810 |
2434 |
https://dev.workflowhub.eu/workflows/1127?version=3, https://dev.workflowhub.eu/workflows/1173?version=2, https://usegalaxy.eu/published/workflow?id=86900be4282d4b1d, https://usegalaxy.eu/published/workflow?id=9b9e1e28f3683f92, https://usegalaxy.eu/published/workflow?id=a2c46deea34d9d80, https://usegalaxy.eu/published/workflow?id=bc32937d505135ab, https://usegalaxy.eu/published/workflow?id=bebcbd6f0ffa55c5, https://usegalaxy.eu/published/workflow?id=ff4d5beb6ce1809d, https://usegalaxy.org.au/published/workflow?id=0a3fb089674de144, https://usegalaxy.org/published/workflow?id=b0f85c802c1ea7f8, https://usegalaxy.org/published/workflow?id=e0c33057ac2670ba, https://workflowhub.eu/workflows/1103?version=3, https://workflowhub.eu/workflows/1104?version=2, https://workflowhub.eu/workflows/1518?version=1, https://workflowhub.eu/workflows/1641?version=1 |
assembly/ERGA-post-assembly-QC, genome-annotation/functional, genome-annotation/gene-centric, sequence-analysis/ncbi-blast-against-the-madland |
|
diffbind |
diffbind |
Diffbind provides functions for processing ChIP-Seq data. |
2018-01-21 |
http://bioconductor.org/packages/release/bioc/html/DiffBind.html |
3.12.0 |
bioconductor-diffbind |
3.16.0 |
To update |
ChIP-seq |
Differential binding analysis |
Differential binding analysis |
ChIP-seq |
ChIP-seq |
bgruening |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/diffbind |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/diffbind |
diffbind |
DiffBind |
Compute differentially bound sites from multiple ChIP-seq experiments using affinity (quantitative) data. Also enables occupancy (overlap) analysis and plotting functions. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
637 |
704 |
7747 |
8575 |
1327 |
1996 |
14222 |
19463 |
78 |
93 |
1812 |
2039 |
66 |
66 |
117 |
117 |
30194 |
23898 |
2859 |
2108 |
https://usegalaxy.eu/published/workflow?id=719314fa5263b501, https://usegalaxy.eu/published/workflow?id=7d44ea091d437edf |
|
|
diffdock |
diffdock |
Diffusion Steps, Twists, and Turns for Molecular Docking. |
2025-06-27 |
https://github.com/gcorso/DiffDock |
1.1.3 |
|
|
To update |
Computational chemistry |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/diffdock/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/diffdock |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
dimet |
dimet_@EXECUTABLE@, dimet_@EXECUTABLE@, dimet_@EXECUTABLE@, dimet_@EXECUTABLE@, dimet_@EXECUTABLE@, dimet_@EXECUTABLE@, dimet_@EXECUTABLE@, dimet_@EXECUTABLE@, dimet_@EXECUTABLE@, dimet_@EXECUTABLE@ |
DIMet is a bioinformatics pipeline for differential analysis of isotopic targeted labeling data. |
2023-07-19 |
https://github.com/cbib/DIMet |
0.2.4 |
dimet |
0.2.4 |
Up-to-date |
Metabolomics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/dimet |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
disco |
disco |
DISCO is a overlap-layout-consensus (OLC) metagenome assembler |
2017-10-26 |
http://disco.omicsbio.org/ |
|
disco |
1.3 |
To update |
Metagenomics, Assembly |
Protein sequence analysis |
Protein sequence analysis |
Structure determination |
Structure determination |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/disco/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/disco |
disco |
DISCO |
DISCO is software to perform structure determination of protein homo-oligomers with cyclic symmetry.DISCO computes oligomeric protein structures using geometric constraints derived from RDCs and intermolecular distance restraints such as NOEs or disulfide bonds. When a reliable subunit structure can be calculated from intramolecular restraints, DISCO guarantees that all satisfying oligomer structures will be discovered, yet can run in minutes to hours on only a single desktop-class computer. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
128 |
150 |
345 |
427 |
412 |
413 |
1443 |
1449 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1876 |
1788 |
563 |
540 |
|
|
|
dnabot |
dnabot |
DNA assembly using BASIC on OpenTrons |
2022-04-17 |
https://github.com/BASIC-DNA-ASSEMBLY/DNA-BOT |
3.1.0 |
dnabot |
|
To update |
Synthetic Biology |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/dnabot |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/dnabot |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
https://dev.workflowhub.eu/workflows/1147?version=2, https://workflowhub.eu/workflows/1576?version=1 |
synthetic-biology/basic_assembly_analysis |
|
dnaweaver |
dnaweaver |
Given a SBOL input, calculate assembly parts for Gibson or Golden Gate. |
2022-12-08 |
https://github.com/Edinburgh-Genome-Foundry/DnaWeaver |
1.0.2 |
dnaweaver_synbiocad |
1.0.2 |
Up-to-date |
Synthetic Biology |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/dnaweaver |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/dnaweaver |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
dos2unix |
dos2unix |
dos2unix convert text files with DOS or Mac line breaks to Unix line breaks and vice versa. |
2025-07-11 |
https://waterlan.home.xs4all.nl/dos2unix.html |
7.5.2 |
dos2unix |
|
To update |
Text Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/dos2unix/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/dos2unix |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
dram |
dram_annotate, dram_distill, dram_merge_annotations, dram_neighborhoods, dram_strainer |
DRAM for distilling microbial metabolism to automate the curation of microbiome function |
2022-09-01 |
https://github.com/WrightonLabCSU/DRAM |
1.5.0 |
dram |
1.5.0 |
Up-to-date |
Metagenomics |
Gene functional annotation |
Gene functional annotation |
Metagenomics, Biological databases, Molecular genetics |
Metagenomics, Biological databases, Molecular genetics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/dram |
dram |
DRAM |
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes |
|
0 |
0 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
0 |
0 |
73 |
73 |
7707 |
7707 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7707 |
7707 |
73 |
73 |
|
|
|
drep |
drep_compare, drep_dereplicate |
dRep compares and dereplicates genome sets |
2020-01-06 |
https://github.com/MrOlm/drep |
3.6.2 |
drep |
3.6.2 |
Up-to-date |
Metagenomics |
Genome comparison |
Genome comparison |
Metagenomics, Genomics, Sequence analysis |
Metagenomics, Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/drep |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/drep |
drep |
dRep |
Fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication. |
|
2 |
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
77 |
77 |
1057 |
1057 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
28 |
28 |
515 |
515 |
1572 |
1572 |
105 |
105 |
https://usegalaxy.eu/published/workflow?id=0563f58718be932d, https://usegalaxy.eu/published/workflow?id=1e5f1d9a51032e44, https://usegalaxy.eu/published/workflow?id=3f6c7249ef71ae41, https://usegalaxy.eu/published/workflow?id=7ecd92cb382d8168, https://usegalaxy.eu/published/workflow?id=97312d273b6e8bd9, https://workflowhub.eu/workflows/1352?version=3 |
genome-annotation/bacterial-genome-quality-control |
|
dropletutils |
dropletutils |
DropletUtils - Utilities for handling droplet-based single-cell RNA-seq data |
2019-06-04 |
https://bioconductor.org/packages/devel/bioc/html/DropletUtils.html |
1.10.0 |
bioconductor-dropletutils |
1.26.0 |
To update |
Single Cell, Sequence Analysis |
Loading, Community profiling |
|
Gene expression, RNA-seq, Sequencing, Transcriptomics |
Sequencing, Transcriptomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/dropletutils/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/dropletutils |
dropletutils |
DropletUtils |
Provides a number of utility functions for handling single-cell (RNA-seq) data from droplet technologies such as 10X Genomics. This includes data loading, identification of cells from empty droplets, removal of barcode-swapped pseudo-cells, and downsampling of the count matrix. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
450 |
462 |
4364 |
4596 |
291 |
291 |
4874 |
4874 |
38 |
38 |
1969 |
1969 |
26 |
26 |
62 |
62 |
11501 |
11269 |
817 |
805 |
https://dev.workflowhub.eu/workflows/1019?version=1, https://dev.workflowhub.eu/workflows/1020?version=1, https://dev.workflowhub.eu/workflows/1022?version=1, https://dev.workflowhub.eu/workflows/1220?version=3, https://dev.workflowhub.eu/workflows/1247?version=2, https://dev.workflowhub.eu/workflows/1255?version=2, https://usegalaxy.eu/published/workflow?id=0f563f176bb245af, https://usegalaxy.eu/published/workflow?id=3403d5a8a71e0c3c, https://usegalaxy.eu/published/workflow?id=49a6ddcba35bf085, https://usegalaxy.eu/published/workflow?id=6a6e2c2335051fb5, https://usegalaxy.eu/published/workflow?id=704e6c9bc51db49f, https://usegalaxy.eu/published/workflow?id=7d22eea4278570e8, https://usegalaxy.eu/published/workflow?id=83ae28e23099a3f6, https://usegalaxy.eu/published/workflow?id=90a32c95b60f5221, https://usegalaxy.eu/published/workflow?id=a1cfb476e849fce3, https://usegalaxy.eu/published/workflow?id=a3cb75fd31ba0689, https://usegalaxy.eu/published/workflow?id=af7c349497a75314, https://usegalaxy.eu/published/workflow?id=b5627201bb4f6943, https://usegalaxy.eu/published/workflow?id=d79309343e2a5d62, https://usegalaxy.eu/published/workflow?id=e7494f29c8672f34, https://usegalaxy.eu/published/workflow?id=fa960b78dfc0c2f8, https://usegalaxy.eu/published/workflow?id=fd61d070d9744f95, https://usegalaxy.org.au/published/workflow?id=0458ecd2761307d1, https://usegalaxy.org.au/published/workflow?id=10296e860e9ef4bb, https://usegalaxy.org.au/published/workflow?id=281ea78467e73147, https://usegalaxy.org.au/published/workflow?id=3fd10af90a07f771, https://usegalaxy.org.au/published/workflow?id=41b115a9be4b6002, https://usegalaxy.org.au/published/workflow?id=471615c412b305f2, https://usegalaxy.org.au/published/workflow?id=644d8e4c78df8e36, https://usegalaxy.org.au/published/workflow?id=738350fc2ca69c0b, https://usegalaxy.org.au/published/workflow?id=c64dcc1e6a67f3e4, https://usegalaxy.org.au/published/workflow?id=f627023a3401bf9b, https://usegalaxy.org/published/workflow?id=4bbe4c8a6c52d03a, https://usegalaxy.org/published/workflow?id=516a2181b41af94e, https://usegalaxy.org/published/workflow?id=69712265fdb10ed5, https://usegalaxy.org/published/workflow?id=7aa36b1722ff4c11, https://usegalaxy.org/published/workflow?id=8e6d24a14d2908c2, https://usegalaxy.org/published/workflow?id=b73e416c06790ac5, https://usegalaxy.org/published/workflow?id=be7dab2274c1acdd, https://usegalaxy.org/published/workflow?id=cdb6c9c7037a95b2, https://workflowhub.eu/workflows/1523?version=1, https://workflowhub.eu/workflows/1527?version=1, https://workflowhub.eu/workflows/1546?version=1 |
single-cell/scrna-data-ingest, single-cell/scrna-preprocessing-tenx |
|
drug2cell |
drug2cell |
Collection of utility functions for gene group activity evaluation in scanpy. |
2025-01-21 |
https://github.com/Teichlab/drug2cell |
0.1.2 |
drug2cell |
0.1.2 |
Up-to-date |
Single Cell |
|
|
|
|
iuc |
https://github.com/Teichlab/drug2cell |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/drug2cell |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
duplex_family_size_distribution |
fsd, fsd_beforevsafter, fsd_regions, td |
Tool that plots a histogram of sizes of read families |
2019-10-24 |
|
1.0.2 |
matplotlib |
|
To update |
Graphics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/fsd |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/fsd |
|
|
|
|
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
13 |
557 |
602 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
602 |
557 |
13 |
13 |
|
|
|
ebi_tools |
ebi_search_rest_results |
Tools to query and download data from several EMBL-EBI databases |
2016-11-29 |
http://www.ebi.ac.uk/services/all |
0.1.1 |
six |
|
To update |
Web Services, Data Source |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ebi_tools |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ebi_tools |
|
|
|
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
130 |
171 |
250 |
419 |
558 |
560 |
1454 |
1461 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1880 |
1704 |
731 |
688 |
|
|
|
edger |
edger |
Perform RNA-Seq differential expression analysis using edgeR pipeline |
2017-09-11 |
http://bioconductor.org/packages/release/bioc/html/edgeR.html |
3.36.0 |
bioconductor-edger |
4.4.0 |
To update |
Transcriptomics, RNA, Statistics, Single Cell |
Differential gene expression analysis |
Differential gene expression analysis |
Genetics, RNA-Seq, ChIP-seq |
Genetics, RNA-Seq, ChIP-seq |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/edger |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/edger |
edger |
edgeR |
Differential expression analysis of RNA-seq expression profiles with biological replication. Implements a range of statistical methodology based on the negative binomial distributions, including empirical Bayes estimation, exact tests, generalized linear models and quasi-likelihood tests. As well as RNA-seq, it be applied to differential signal analysis of other types of genomic data that produce counts, including ChIP-seq, SAGE and CAGE. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
2605 |
2952 |
19687 |
22821 |
6267 |
7920 |
47124 |
61548 |
856 |
935 |
8185 |
9283 |
27 |
27 |
165 |
165 |
93817 |
75161 |
11834 |
9755 |
https://dev.workflowhub.eu/workflows/1395?version=1, https://usegalaxy.eu/published/workflow?id=0229f3f3835c2d53, https://usegalaxy.eu/published/workflow?id=04df470a38b10e94, https://usegalaxy.eu/published/workflow?id=c3a11e1ac1aa8383, https://usegalaxy.eu/published/workflow?id=c7b9fb6872444809, https://usegalaxy.eu/published/workflow?id=d1b3b62e7f91e217, https://usegalaxy.eu/published/workflow?id=e04be1ab5a16eb9f, https://usegalaxy.org.au/published/workflow?id=0cfc1408fd9ea4e7, https://usegalaxy.org.au/published/workflow?id=0fc7c14c4d1ac8f5, https://usegalaxy.org.au/published/workflow?id=5fe66b29dcfb22ab, https://usegalaxy.org.au/published/workflow?id=863eee1b041b6c58, https://usegalaxy.org/published/workflow?id=03258e0321162584, https://usegalaxy.org/published/workflow?id=13a3954b8894e1b1, https://usegalaxy.org/published/workflow?id=ce232859a466c75c, https://usegalaxy.org/published/workflow?id=d761637d43ee0324, https://workflowhub.eu/workflows/1207?version=2, https://workflowhub.eu/workflows/1556?version=1 |
single-cell/pseudobulk-analysis |
|
ega_download_client |
pyega3 |
EGA python client uses the EGA REST API to download authorized datasets and files. |
2020-09-02 |
https://github.com/EGA-archive/ega-download-client |
5.0.2 |
pyega3 |
5.2.0 |
To update |
Data Source |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/pyega3 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pyega3 |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
115 |
115 |
2756 |
2756 |
46 |
46 |
153 |
153 |
4 |
4 |
214 |
214 |
0 |
0 |
0 |
0 |
3123 |
3123 |
165 |
165 |
https://dev.workflowhub.eu/workflows/1096?version=2, https://usegalaxy.eu/published/workflow?id=b3c0eba755f269b2, https://workflowhub.eu/workflows/1636?version=1, https://workflowhub.eu/workflows/363?version=2 |
variant-analysis/trio-analysis |
|
egsea |
egsea |
This tool implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing |
2017-12-28 |
https://bioconductor.org/packages/release/bioc/html/EGSEA.html |
1.20.0 |
bioconductor-egsea |
1.34.0 |
To update |
Transcriptomics, RNA, Statistics, Single Cell |
Gene set testing |
Gene set testing |
Systems biology |
Systems biology |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/egsea |
egsea |
EGSEA |
This package implements the Ensemble of Gene Set Enrichment Analyses method for gene set testing. |
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
365 |
429 |
2723 |
3263 |
810 |
810 |
5488 |
5488 |
274 |
278 |
2084 |
2171 |
0 |
0 |
0 |
0 |
10922 |
10295 |
1517 |
1449 |
https://dev.workflowhub.eu/workflows/1316?version=1, https://usegalaxy.eu/published/workflow?id=12bf85cdc8102bb5, https://usegalaxy.eu/published/workflow?id=63c91ea322cd2819, https://usegalaxy.eu/published/workflow?id=732fa536cdc70c96, https://usegalaxy.eu/published/workflow?id=8b1e2fe9f4a07de0, https://usegalaxy.org.au/published/workflow?id=9f6e62f465589ca3, https://workflowhub.eu/workflows/1699?version=1 |
transcriptomics/rna-seq-genes-to-pathways |
|
emboss |
emboss_needle, emboss_needleall |
Galaxy wrappers for EMBOSS6 tools |
2025-01-17 |
http://emboss.open-bio.org/ |
6.6.0 |
emboss |
6.6.0 |
Up-to-date |
Sequence Analysis, Fasta Manipulation |
Sequence analysis, Local alignment, Sequence alignment analysis, Global alignment, Sequence alignment |
Sequence analysis, Local alignment, Sequence alignment analysis, Global alignment, Sequence alignment |
Molecular biology, Sequence analysis, Biology |
Molecular biology, Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/emboss |
emboss |
EMBOSS |
Diverse suite of tools for sequence analysis; many programs analagous to GCG; context-sensitive help for each tool. |
|
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
1 |
1 |
|
|
|
emboss_5 |
EMBOSS: antigenic1, EMBOSS: backtranseq2, EMBOSS: banana3, EMBOSS: biosed4, EMBOSS: btwisted5, EMBOSS: cai6, EMBOSS: cai_custom6, EMBOSS: chaos7, EMBOSS: charge8, EMBOSS: checktrans9, EMBOSS: chips10, EMBOSS: cirdna11, EMBOSS: codcmp12, EMBOSS: coderet13, EMBOSS: compseq14, EMBOSS: cpgplot15, EMBOSS: cpgreport16, EMBOSS: cusp17, EMBOSS: cutseq18, EMBOSS: dan19, EMBOSS: degapseq20, EMBOSS: descseq21, EMBOSS: diffseq22, EMBOSS: digest23, EMBOSS: dotmatcher24, EMBOSS: dotpath25, EMBOSS: dottup26, EMBOSS: dreg27, EMBOSS: einverted28, EMBOSS: epestfind29, EMBOSS: equicktandem31, EMBOSS: est2genome32, EMBOSS: etandem33, EMBOSS: extractfeat34, EMBOSS: extractseq35, EMBOSS: freak36, EMBOSS: fuzznuc37, EMBOSS: fuzzpro38, EMBOSS: fuzztran39, EMBOSS: garnier40, EMBOSS: geecee41, EMBOSS: getorf42, EMBOSS: helixturnhelix43, EMBOSS: hmoment44, EMBOSS: iep45, EMBOSS: infoseq46, EMBOSS: isochore47, EMBOSS: lindna48, EMBOSS: marscan49, EMBOSS: maskfeat50, EMBOSS: maskseq51, EMBOSS: matcher52, EMBOSS: megamerger53, EMBOSS: merger54, EMBOSS: msbar55, EMBOSS: needle56, EMBOSS: newcpgreport57, EMBOSS: newcpgseek58, EMBOSS: newseq59, EMBOSS: noreturn60, EMBOSS: notseq61, EMBOSS: nthseq62, EMBOSS: octanol63, EMBOSS: oddcomp64, EMBOSS: palindrome65, EMBOSS: pasteseq66, EMBOSS: patmatdb67, EMBOSS: pepcoil68, EMBOSS: pepinfo69, EMBOSS: pepnet70, EMBOSS: pepstats71, EMBOSS: pepwheel72, EMBOSS: pepwindow73, EMBOSS: pepwindowall74, EMBOSS: plotcon75, EMBOSS: plotorf76, EMBOSS: polydot77, EMBOSS: preg78, EMBOSS: prettyplot79, EMBOSS: prettyseq80, EMBOSS: primersearch81, EMBOSS: revseq82, EMBOSS: seqmatchall83, EMBOSS: seqret84, EMBOSS: showfeat85, EMBOSS: shuffleseq87, EMBOSS: sigcleave88, EMBOSS: sirna89, EMBOSS: sixpack90, EMBOSS: skipseq91, EMBOSS: splitter92, EMBOSS: supermatcher95, EMBOSS: syco96, EMBOSS: tcode97, EMBOSS: textsearch98, EMBOSS: tmap99, EMBOSS: tranalign100, EMBOSS: transeq101, EMBOSS: trimest102, EMBOSS: trimseq103, EMBOSS: twofeat104, EMBOSS: union105, EMBOSS: vectorstrip106, EMBOSS: water107, EMBOSS: wobble108, EMBOSS: wordcount109, EMBOSS: wordmatch110 |
Galaxy wrappers for EMBOSS version 5.0.0 tools |
2017-01-11 |
http://emboss.open-bio.org/ |
5.0.0 |
emboss |
6.6.0 |
To update |
Sequence Analysis, Fasta Manipulation |
Sequence analysis, Local alignment, Sequence alignment analysis, Global alignment, Sequence alignment |
Sequence analysis, Local alignment, Sequence alignment analysis, Global alignment, Sequence alignment |
Molecular biology, Sequence analysis, Biology |
Molecular biology, Sequence analysis |
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/emboss_5 |
emboss |
EMBOSS |
Diverse suite of tools for sequence analysis; many programs analagous to GCG; context-sensitive help for each tool. |
|
107 |
107 |
107 |
107 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
107 |
0 |
0 |
0 |
0 |
0 |
107 |
0 |
0 |
0 |
0 |
107 |
107 |
107 |
0 |
397 |
431 |
251089 |
258085 |
1243 |
2298 |
161146 |
311665 |
651 |
744 |
28056 |
31289 |
41 |
41 |
869 |
882 |
601921 |
441160 |
3514 |
2332 |
https://dev.workflowhub.eu/workflows/1069?version=2, https://dev.workflowhub.eu/workflows/1078?version=1, https://dev.workflowhub.eu/workflows/42?version=1, https://dev.workflowhub.eu/workflows/43?version=1, https://usegalaxy.eu/published/workflow?id=04a4dcac3fd922c5, https://usegalaxy.eu/published/workflow?id=0ed8817a90caa2b1, https://usegalaxy.eu/published/workflow?id=1031e4c4f18e020e, https://usegalaxy.eu/published/workflow?id=1f88311a8e365c17, https://usegalaxy.eu/published/workflow?id=2c79eee5ca5a3b09, https://usegalaxy.eu/published/workflow?id=2cec6a39cd496f09, https://usegalaxy.eu/published/workflow?id=33312e5643279e8a, https://usegalaxy.eu/published/workflow?id=402b14906a03b2ef, https://usegalaxy.eu/published/workflow?id=6e1fe7372e93fae0, https://usegalaxy.eu/published/workflow?id=90f993a1b245eb68, https://usegalaxy.eu/published/workflow?id=9275d0c90a8713d6, https://usegalaxy.eu/published/workflow?id=93d1035a307fe63d, https://usegalaxy.eu/published/workflow?id=a31100610fba17a1, https://usegalaxy.eu/published/workflow?id=ada52ba09b462567, https://usegalaxy.eu/published/workflow?id=b681f7b677b23168, https://usegalaxy.eu/published/workflow?id=b77e3b08092fa73e, https://usegalaxy.eu/published/workflow?id=d22dac11eba8c5a3, https://usegalaxy.eu/published/workflow?id=e7f03b4bd9b3d6fd, https://usegalaxy.eu/published/workflow?id=eaf3c4d97399e673, https://usegalaxy.fr/published/workflow?id=297b71156b297a73, https://usegalaxy.fr/published/workflow?id=b3974acb70608e38, https://usegalaxy.org.au/published/workflow?id=42137e36791652bc, https://usegalaxy.org.au/published/workflow?id=6b1b0a945d367b4c, https://usegalaxy.org.au/published/workflow?id=94c7fdcbbc7b428a, https://usegalaxy.org.au/published/workflow?id=b432a1312859edd2, https://usegalaxy.org.au/published/workflow?id=dccc8fb49d61ac33, https://usegalaxy.org.au/published/workflow?id=f21446cc44da50ce, https://usegalaxy.org/published/workflow?id=00381bbae3fd7e78, https://usegalaxy.org/published/workflow?id=2d1ca299c1b058f6, https://usegalaxy.org/published/workflow?id=3b37e1cb61ec6f8e, https://usegalaxy.org/published/workflow?id=3c7349268d74c576, https://usegalaxy.org/published/workflow?id=4884918895db9af0, https://usegalaxy.org/published/workflow?id=63adc811e3ae529d, https://usegalaxy.org/published/workflow?id=6b4ad51307a28c7f, https://usegalaxy.org/published/workflow?id=6f836f4b71d399e7, https://usegalaxy.org/published/workflow?id=8d8e8927d63803ef, https://usegalaxy.org/published/workflow?id=8e1c6ad6ff623015, https://usegalaxy.org/published/workflow?id=94da3d448bb8a137, https://usegalaxy.org/published/workflow?id=956987e628530c79, https://usegalaxy.org/published/workflow?id=a666aaaa32f62487, https://usegalaxy.org/published/workflow?id=cc6ee582a6e5cae2, https://usegalaxy.org/published/workflow?id=cdf5dffbed938d49, https://usegalaxy.org/published/workflow?id=d3a69b0b826331ef, https://usegalaxy.org/published/workflow?id=e1dcdc125122f561, https://usegalaxy.org/published/workflow?id=e7ce46762faccaac, https://usegalaxy.org/published/workflow?id=f737593a1db217c8, https://workflowhub.eu/workflows/1035?version=1, https://workflowhub.eu/workflows/1632?version=1, https://workflowhub.eu/workflows/1647?version=1, https://workflowhub.eu/workflows/439?version=3 |
sequence-analysis/viral_primer_design, variant-analysis/pox-tiled-amplicon, variant-analysis/tb-variant-analysis |
|
ena_upload |
ena_upload |
Submits experimental data and respective metadata to the European Nucleotide Archive (ENA). |
2020-06-10 |
https://github.com/usegalaxy-eu/ena-upload-cli |
0.9.0 |
ena-upload-cli |
0.9.0 |
Up-to-date |
Data Export |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_upload |
|
|
|
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
41 |
41 |
377 |
377 |
0 |
0 |
0 |
0 |
14 |
14 |
1532 |
1532 |
0 |
0 |
0 |
0 |
1909 |
1909 |
55 |
55 |
https://dev.workflowhub.eu/workflows/1334?version=1, https://usegalaxy.eu/published/workflow?id=924edc19e0653870, https://workflowhub.eu/workflows/1409?version=1 |
galaxy-interface/upload-data-to-ena |
|
ena_webin_cli |
ena_webin_cli |
Submits a genome assembly to the European Nucleotide Archive (ENA) using the Webin-CLI Submission tool. |
2025-02-27 |
https://ena-docs.readthedocs.io/en/latest/submit/general-guide/webin-cli.html |
8.1.1 |
ena-webin-cli |
9.0.0 |
To update |
Data Export |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
enasearch |
enasearch_retrieve_analysis_report, enasearch_retrieve_data, enasearch_retrieve_run_report, enasearch_retrieve_taxons, enasearch_search_data |
A Python library for interacting with ENA's API |
2017-08-05 |
https://github.com/bebatut/enasearch |
|
enasearch |
0.2.2 |
To update |
Data Source |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/enasearch |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/enasearch |
|
|
|
|
0 |
0 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
5 |
0 |
161 |
217 |
1898 |
2361 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2361 |
1898 |
217 |
161 |
|
|
|
ensembl_vep |
ensembl_vep |
Ensembl VEP: Annotate VCFs with variant effect predictions |
2022-05-11 |
https://github.com/Ensembl/ensembl-vep |
114.2 |
ensembl-vep |
114.2 |
Up-to-date |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ensembl_vep |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ensembl_vep |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
201 |
201 |
3475 |
3475 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3475 |
3475 |
201 |
201 |
https://usegalaxy.eu/published/workflow?id=1da86d74f8535f4e, https://usegalaxy.eu/published/workflow?id=2424282f793f0f1b, https://usegalaxy.eu/published/workflow?id=5ed38d8114bcd6f7, https://usegalaxy.eu/published/workflow?id=99ad31bf3970ade4, https://usegalaxy.eu/published/workflow?id=ce1712139b4a4273, https://workflowhub.eu/workflows/607?version=1, https://workflowhub.eu/workflows/629?version=1 |
|
|
episcanpy |
episcanpy_build_matrix, episcanpy_cluster_embed, episcanpy_preprocess |
EpiScanpy – Epigenomics single cell analysis in python |
2023-03-13 |
https://github.com/colomemaria/epiScanpy |
0.3.2 |
episcanpy |
0.4.0 |
To update |
Single Cell, Epigenetics |
Enrichment analysis, Imputation |
Enrichment analysis, Imputation |
Epigenomics, Cell biology, DNA |
Epigenomics, Cell biology, DNA |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/episcanpy/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/episcanpy |
episcanpy |
epiScanpy |
Epigenomics Single Cell Analysis in Python. |
|
3 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
44 |
44 |
1006 |
1006 |
40 |
40 |
298 |
298 |
1 |
1 |
385 |
385 |
0 |
0 |
0 |
0 |
1689 |
1689 |
85 |
85 |
https://dev.workflowhub.eu/workflows/1011?version=1, https://dev.workflowhub.eu/workflows/1012?version=1, https://dev.workflowhub.eu/workflows/1208?version=1, https://dev.workflowhub.eu/workflows/1275?version=1, https://workflowhub.eu/workflows/1502?version=1, https://workflowhub.eu/workflows/1506?version=1 |
single-cell/scatac-preprocessing-tenx |
|
ete_treeviewer |
ete_treeviewer |
A toolkit for the analysis and visualization of trees. |
2024-11-25 |
http://etetoolkit.org |
3.1.3 |
curl |
|
To update |
Phylogenetics |
Phylogenetic analysis, Phylogenetic tree editing |
Phylogenetic tree editing |
Phylogenetics |
Phylogenetics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ete-toolkit |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ete-toolkit |
ete |
ete |
The Environment for Tree Exploration (ETE) is a computational framework that simplifies the reconstruction, analysis, and visualization of phylogenetic trees and multiple sequence alignments. Here, we present ETE v3, featuring numerous improvements in the underlying library of methods, and providing a novel set of standalone tools to perform common tasks in comparative genomics and phylogenetics. The new features include (i) building gene-based and supermatrix-based phylogenies using a single command, (ii) testing and visualizing evolutionary models, (iii) calculating distances between trees of different size or including duplications, and (iv) providing seamless integration with the NCBI taxonomy database. ETE is freely available at http://etetoolkit.org |
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
https://workflowhub.eu/workflows/1650?version=1 |
sequence-analysis/tapscan-streptophyte-algae |
|
eukrep |
eukrep |
Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets |
2025-07-30 |
https://github.com/patrickwest/EukRep |
0.6.7 |
eukrep |
0.6.7 |
Up-to-date |
Metagenomics |
Nucleic acid sequence analysis |
Nucleic acid sequence analysis |
Metagenomics |
Metagenomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/eukrep |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/eukrep |
eukrep |
EukRep |
Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
evidencemodeler |
evidencemodeler |
EVidenceModeler (EVM) combines ab intio genetic predictions with protein and transcript alignments in weighted consensus genetic structures. |
2024-07-19 |
https://github.com/EVidenceModeler/EVidenceModeler?tab=readme-ov-file |
2.1.0 |
evidencemodeler |
2.1.0 |
Up-to-date |
Genome annotation |
Gene prediction |
Gene prediction |
Gene expression, Gene structure |
Gene expression, Gene structure |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/evidencemodeler |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/evidencemodeler |
EvidenceModeler |
EvidenceModeler |
The EVidenceModeler (aka EVM) software combines ab intio gene predictions and protein and transcript alignments into weighted consensus gene structures. EVM provides a flexible and intuitive framework for combining diverse evidence types into a single automated gene structure annotation system. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
5 |
9 |
9 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
9 |
9 |
5 |
5 |
|
|
|
exomedepth |
exomedepth |
ExomeDepth: Calls copy number variants (CNVs) from targeted sequence data |
2019-11-08 |
https://cran.r-project.org/package=ExomeDepth |
1.1.0 |
r-exomedepth |
1.1.18 |
To update |
Sequence Analysis, Variant Analysis |
Sequence analysis, Variant calling, Genotyping, Copy number estimation |
Sequence analysis, Variant calling, Genotyping, Copy number estimation |
Exome sequencing, Gene transcripts, Mapping, Sequencing, Genetic variation, Rare diseases |
Exome sequencing, Gene transcripts, Mapping, Genetic variation, Rare diseases |
crs4 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/exomedepth |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/exomedepth |
exomedepth |
ExomeDepth |
Copy number variant (CNV) calling algorithm designed to control technical variability between samples. It calls CNVs from targeted sequence data, typically exome sequencing experiments designed to identify the genetic basis of Mendelian disorders. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
61 |
65 |
515 |
537 |
197 |
197 |
3101 |
3101 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3638 |
3616 |
262 |
258 |
|
|
|
exonerate |
exonerate |
Exonerate is a generic tool for pairwise sequence comparison. |
2018-08-02 |
https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate |
2.4.0 |
exonerate |
2.4.0 |
Up-to-date |
Sequence Analysis |
Pairwise sequence alignment, Protein threading, Genome alignment |
Pairwise sequence alignment, Protein threading, Genome alignment |
Sequence analysis, Sequence sites, features and motifs, Molecular interactions, pathways and networks |
Sequence analysis, Sequence sites, features and motifs, Molecular interactions, pathways and networks |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/exonerate |
exonerate |
Exonerate |
A tool for pairwise sequence alignment. It enables alignment for DNA-DNA and DNA-protein pairs and also gapped and ungapped alignment. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
185 |
196 |
1012 |
1159 |
199 |
199 |
1122 |
1122 |
38 |
38 |
1068 |
1068 |
25 |
26 |
525 |
533 |
3882 |
3727 |
459 |
447 |
|
|
|
export2graphlan |
export2graphlan |
export2graphlan is a conversion software tool for producing both annotation and tree file for GraPhlAn |
2017-03-03 |
https://bitbucket.org/CibioCM/export2graphlan/overview |
0.20 |
export2graphlan |
0.22 |
To update |
Metagenomics |
Conversion |
Conversion |
Taxonomy, Metabolomics, Biomarkers |
Taxonomy, Metabolomics, Biomarkers |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/export2graphlan/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/export2graphlan |
export2graphlan |
export2graphlan |
export2graphlan is a conversion software tool for producing both annotation and tree file for GraPhlAn. In particular, the annotation file tries to highlight specific sub-trees deriving automatically from input file what nodes are important. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
615 |
653 |
5799 |
6416 |
186 |
186 |
690 |
690 |
110 |
110 |
572 |
572 |
0 |
0 |
0 |
0 |
7678 |
7061 |
949 |
911 |
https://dev.workflowhub.eu/workflows/1088?version=1, https://usegalaxy.eu/published/workflow?id=05f5f040337786bf, https://usegalaxy.eu/published/workflow?id=096b75501c8e0888, https://usegalaxy.eu/published/workflow?id=19de5cbae7f48103, https://usegalaxy.eu/published/workflow?id=2cf09adb1ed6c3ec, https://usegalaxy.eu/published/workflow?id=4d32b1b3ac0a7161, https://usegalaxy.eu/published/workflow?id=4f21205e71cabd37, https://usegalaxy.eu/published/workflow?id=5f0faac42b0a5062, https://usegalaxy.eu/published/workflow?id=713a5485e2007f90, https://usegalaxy.eu/published/workflow?id=79b4ae4403772098, https://usegalaxy.eu/published/workflow?id=7ab70660e6235cf0, https://usegalaxy.eu/published/workflow?id=87cc0cd143a12c41, https://usegalaxy.eu/published/workflow?id=994e5ff1df7d6c9e, https://usegalaxy.eu/published/workflow?id=9cbba5de2cbeeb0f, https://usegalaxy.eu/published/workflow?id=a8f829deb69b30ab, https://usegalaxy.eu/published/workflow?id=b5f848dc8e96663c, https://usegalaxy.eu/published/workflow?id=c3aa516e78ca4191, https://usegalaxy.eu/published/workflow?id=d05c6f0f3205fbd2, https://usegalaxy.eu/published/workflow?id=dfc2c53ac3103eff, https://usegalaxy.eu/published/workflow?id=ed0ad728cf21702b, https://usegalaxy.eu/published/workflow?id=fdca6c9d394986bf, https://usegalaxy.fr/published/workflow?id=09e8293456ee6d99, https://usegalaxy.fr/published/workflow?id=c4f6062e51d0f45e, https://workflowhub.eu/workflows/1451?version=2, https://workflowhub.eu/workflows/1466?version=2 |
microbiome/metatranscriptomics, microbiome/metatranscriptomics-short |
|
extract_genomic_dna |
Extract genomic DNA 1 |
Contains a tool that extracts genomic DNA using coordinates from ASSEMBLED genomes and UNassembled genomes. |
2016-01-14 |
|
3.0.3+galaxy3 |
bx-python |
0.14.0 |
To update |
Genomic Interval Operations |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/extract_genomic_dna |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/extract_genomic_dna |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
853 |
1006 |
9217 |
13157 |
1985 |
12103 |
17797 |
260224 |
11 |
63 |
103 |
611 |
1 |
3 |
1 |
201 |
274193 |
27118 |
13175 |
2850 |
https://dev.workflowhub.eu/workflows/1161?version=2, https://dev.workflowhub.eu/workflows/1285?version=2, https://usegalaxy.eu/published/workflow?id=0c619b25c1394a09, https://usegalaxy.eu/published/workflow?id=153ba1581743d31f, https://usegalaxy.eu/published/workflow?id=1ee43d90b69829e9, https://usegalaxy.eu/published/workflow?id=24ddd188da35b061, https://usegalaxy.eu/published/workflow?id=2e1feecca56bb0b8, https://usegalaxy.eu/published/workflow?id=4f40ae432d8a4259, https://usegalaxy.eu/published/workflow?id=51cce3b98da3e822, https://usegalaxy.eu/published/workflow?id=6514e610c79df72c, https://usegalaxy.eu/published/workflow?id=6bce1d419a179c50, https://usegalaxy.eu/published/workflow?id=7d343d982f1105bf, https://usegalaxy.eu/published/workflow?id=8fb156020285e049, https://usegalaxy.eu/published/workflow?id=ad4b347f9b68e127, https://usegalaxy.eu/published/workflow?id=b619339f4e1c6fdf, https://usegalaxy.eu/published/workflow?id=c5e6047b3b256b06, https://usegalaxy.eu/published/workflow?id=d3a8741131485af2, https://usegalaxy.eu/published/workflow?id=f5be5bcf9b9f171c, https://usegalaxy.org/published/workflow?id=0ac68ec25f3534da, https://usegalaxy.org/published/workflow?id=28e86ab943c67417, https://usegalaxy.org/published/workflow?id=30507545aa971637, https://usegalaxy.org/published/workflow?id=468c5a8fe7a40778, https://usegalaxy.org/published/workflow?id=4769befb88f653d6, https://usegalaxy.org/published/workflow?id=56530f4d41413832, https://usegalaxy.org/published/workflow?id=6e75ac640853d0dd, https://usegalaxy.org/published/workflow?id=7643e66a9b4e9c11, https://usegalaxy.org/published/workflow?id=7cae620eea6326af, https://usegalaxy.org/published/workflow?id=94de815260acc3a8, https://usegalaxy.org/published/workflow?id=a666aaaa32f62487, https://usegalaxy.org/published/workflow?id=b8fdf05ec7540510, https://usegalaxy.org/published/workflow?id=ce2619816ce10220, https://usegalaxy.org/published/workflow?id=e75a7802d2941f31, https://usegalaxy.org/published/workflow?id=ecb279a9114140ab, https://workflowhub.eu/workflows/1562?version=1, https://workflowhub.eu/workflows/1706?version=1 |
epigenetics/cut_and_run, transcriptomics/clipseq |
|
fairy |
fairy_cov, fairy_sketch |
Fast approximate contig coverage for metagenomic binning |
2024-12-20 |
https://github.com/bluenote-1577/fairy |
0.5.8 |
fairy |
0.5.8 |
Up-to-date |
Metagenomics |
Read binning, Sequence assembly validation |
Read binning, Sequence assembly validation |
Metagenomics |
Metagenomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/fairy |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/fairy |
fairy |
fairy |
fast approximate contig coverage for metagenomic binningFairy computes multi-sample contig coverage for metagenome-assembled genome (MAG) binning.Fairy is used after metagenomic assembly and before binning. It can- Calculate coverage 100x-1000x faster than read alignment (e.g. BWA)- Give comparable bins for multi-sample binning (short read or nanopore reads)- Output formats that are compatible with MetaBAT2, MaxBin2, SemiBin2, and more |
|
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
13 |
13 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
13 |
2 |
2 |
|
|
|
falco |
falco |
A high throughput sequence QC analysis tool |
2024-04-17 |
https://github.com/smithlabcode/falco/ |
1.2.4 |
falco |
1.2.5 |
To update |
Sequence Analysis |
Sequencing quality control, Visualisation, Read mapping |
Sequencing quality control, Visualisation, Read mapping |
Workflows, Mapping, Imaging |
Workflows, Mapping, Imaging |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/falco |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/falco |
falco |
Falco |
A high-speed FastQC emulation for quality control of sequencing data. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
83 |
83 |
6114 |
6114 |
0 |
0 |
0 |
0 |
9 |
9 |
84 |
84 |
0 |
0 |
0 |
0 |
6198 |
6198 |
92 |
92 |
https://dev.workflowhub.eu/workflows/1329?version=5, https://usegalaxy.eu/published/workflow?id=3d0039098a87642c, https://usegalaxy.eu/published/workflow?id=c9ef2d2ce92e2dfb, https://usegalaxy.org.au/published/workflow?id=71bad95f72c9f30d, https://usegalaxy.org.au/published/workflow?id=7cd1acb1da823cdc, https://workflowhub.eu/workflows/1562?version=1, https://workflowhub.eu/workflows/1644?version=1, https://workflowhub.eu/workflows/1715?version=1 |
assembly/mrsa-illumina, ecology/ENA_Biodiv_submission, epigenetics/cut_and_run, epigenetics/methylation-seq, galaxy-interface/workflow-fairification, sequence-analysis/quality-contamination-control, transcriptomics/ref-based, variant-analysis/somatic-variant-discovery, variant-analysis/somatic-variants |
|
fargene |
fargene |
fARGene (Fragmented Antibiotic Resistance Gene iENntifiEr ) |
2019-08-30 |
https://github.com/fannyhb/fargene |
0.1 |
fargene |
0.1 |
Up-to-date |
Sequence Analysis |
Antimicrobial resistance prediction |
Antimicrobial resistance prediction |
Metagenomics, Microbiology, Public health and epidemiology, Antimicrobial resistance |
Metagenomics, Microbiology, Public health and epidemiology |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/fargene |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/fargene |
fargene |
fARGene |
fARGene (Fragmented Antibiotic Resistance Gene iENntifiEr ) is a tool that takes either fragmented metagenomic data or longer sequences as input and predicts and delivers full-length antiobiotic resistance genes as output. |
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
135 |
138 |
614 |
631 |
260 |
260 |
1270 |
1270 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1901 |
1884 |
398 |
395 |
|
|
|
fasta_clipping_histogram |
cshl_fasta_clipping_histogram |
Length Distribution chart |
2017-07-10 |
http://hannonlab.cshl.edu/fastx_toolkit/ |
0.0.14 |
fastx_toolkit |
0.0.14 |
Up-to-date |
Fasta Manipulation, Graphics, Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fasta_clipping_histogram |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/fastx_toolkit/fasta_clipping_histogram |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
11 |
26 |
26 |
0 |
0 |
0 |
0 |
102 |
132 |
5509 |
5759 |
1 |
1 |
1 |
1 |
5786 |
5536 |
144 |
114 |
|
|
|
fasta_formatter |
cshl_fasta_formatter |
FASTA Width formatter |
2018-04-24 |
http://hannonlab.cshl.edu/fastx_toolkit/ |
0.0.14 |
fastx_toolkit |
0.0.14 |
Up-to-date |
Fasta Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fasta_formatter |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/fastx_toolkit/fasta_formatter |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
280 |
343 |
11412 |
11766 |
467 |
2070 |
3879 |
25920 |
76 |
98 |
729 |
1162 |
6 |
7 |
45 |
55 |
38903 |
16065 |
2518 |
829 |
https://usegalaxy.eu/published/workflow?id=02f240f6cf72080a, https://usegalaxy.eu/published/workflow?id=0609a4b1941d1a68, https://usegalaxy.eu/published/workflow?id=0b9071d5dfa38559, https://usegalaxy.eu/published/workflow?id=2ebf65efe8ca4a7f, https://usegalaxy.eu/published/workflow?id=3dcf09e75d707573, https://usegalaxy.eu/published/workflow?id=44189803f223acd1, https://usegalaxy.eu/published/workflow?id=76e9cd837ea5e7da, https://usegalaxy.eu/published/workflow?id=8f415b0c409f56f7, https://usegalaxy.eu/published/workflow?id=90f993a1b245eb68, https://usegalaxy.eu/published/workflow?id=9fddc44294236e8f, https://usegalaxy.eu/published/workflow?id=b681f7b677b23168, https://usegalaxy.eu/published/workflow?id=d6ff6be33b8bfe85, https://usegalaxy.eu/published/workflow?id=da19c0eaa757fa39, https://usegalaxy.eu/published/workflow?id=df7d9943423549df, https://usegalaxy.org/published/workflow?id=1d923ce15c17b1fe, https://usegalaxy.org/published/workflow?id=20b7ae4b517a80fd, https://usegalaxy.org/published/workflow?id=46f184a0e95f3c1c, https://usegalaxy.org/published/workflow?id=4884918895db9af0, https://usegalaxy.org/published/workflow?id=5f878c4cc3bff68c, https://usegalaxy.org/published/workflow?id=63adc811e3ae529d, https://usegalaxy.org/published/workflow?id=63db7f52a280bd2d, https://usegalaxy.org/published/workflow?id=9bea2e9f45f07f32, https://usegalaxy.org/published/workflow?id=a71fcbc60caae8b6, https://usegalaxy.org/published/workflow?id=a808c139402d7b87, https://usegalaxy.org/published/workflow?id=afb67b4b9952f57d, https://workflowhub.eu/workflows/1270?version=2, https://workflowhub.eu/workflows/1271?version=3, https://workflowhub.eu/workflows/1272?version=2, https://workflowhub.eu/workflows/1738?version=1, https://workflowhub.eu/workflows/1739?version=1, https://workflowhub.eu/workflows/1740?version=1, https://workflowhub.eu/workflows/1741?version=1, https://workflowhub.eu/workflows/517?version=1, https://workflowhub.eu/workflows/518?version=1 |
|
|
fasta_nucleotide_changer |
cshl_fasta_nucleotides_changer |
RNA/DNA converter. |
2018-04-24 |
http://hannonlab.cshl.edu/fastx_toolkit/ |
0.0.14 |
fastx_toolkit |
0.0.14 |
Up-to-date |
Fasta Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fasta_nucleotide_changer |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/fastx_toolkit/fasta_nucleotide_changer |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
77 |
117 |
465 |
845 |
219 |
724 |
2073 |
5582 |
19 |
21 |
422 |
478 |
5 |
6 |
11 |
21 |
6926 |
2971 |
868 |
320 |
https://usegalaxy.org/published/workflow?id=9efb061a87bc9f4d |
|
|
fasta_nucleotide_color_plot |
fasta_nucleotide_color_plot |
Contains a tool that produces a graphical representation of FASTA data with each nucleotide represented by a selected color. |
2016-03-06 |
https://github.com/seqcode/cegr-tools/tree/master/src/org/seqcode/cegrtools/fourcolorplot |
1.0.1 |
openjdk |
|
To update |
Visualization |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_nucleotide_color_plot |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/fasta_nucleotide_color_plot |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
44 |
51 |
168 |
217 |
152 |
203 |
815 |
1023 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1240 |
983 |
254 |
196 |
|
|
|
fasta_stats |
fasta-stats |
Display summary statistics for a fasta file. |
2018-11-21 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ |
2.0 |
numpy |
|
To update |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_stats/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/fasta_stats |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
3374 |
3630 |
51955 |
53092 |
4157 |
4168 |
32853 |
32911 |
2372 |
2759 |
16560 |
19568 |
134 |
134 |
567 |
567 |
106138 |
101935 |
10691 |
10037 |
https://dev.workflowhub.eu/workflows/1005?version=1, https://dev.workflowhub.eu/workflows/1006?version=1, https://dev.workflowhub.eu/workflows/1124?version=1, https://dev.workflowhub.eu/workflows/1131?version=2, https://dev.workflowhub.eu/workflows/1139?version=1, https://dev.workflowhub.eu/workflows/1164?version=2, https://dev.workflowhub.eu/workflows/1170?version=2, https://dev.workflowhub.eu/workflows/1174?version=2, https://dev.workflowhub.eu/workflows/1194?version=2, https://dev.workflowhub.eu/workflows/1435?version=1, https://dev.workflowhub.eu/workflows/233?version=1, https://dev.workflowhub.eu/workflows/584?version=1, https://dev.workflowhub.eu/workflows/585?version=1, https://dev.workflowhub.eu/workflows/586?version=1, https://usegalaxy.eu/published/workflow?id=0ebfab0e957b7267, https://usegalaxy.eu/published/workflow?id=26ad77bc07a7e512, https://usegalaxy.eu/published/workflow?id=30b514cfb9cce524, https://usegalaxy.eu/published/workflow?id=49c46d7653d6c349, https://usegalaxy.eu/published/workflow?id=6ca20e710f4f3ffb, https://usegalaxy.eu/published/workflow?id=9ddb703e1db13504, https://usegalaxy.eu/published/workflow?id=ef83f7fd2176a244, https://usegalaxy.org.au/published/workflow?id=044b6b475b4db27a, https://usegalaxy.org.au/published/workflow?id=1ad4c47cee851dda, https://usegalaxy.org.au/published/workflow?id=22bd45f60c60a338, https://usegalaxy.org.au/published/workflow?id=2cb16d321a804b1a, https://usegalaxy.org.au/published/workflow?id=36604d0ab0dee988, https://usegalaxy.org.au/published/workflow?id=479c6b0a96ea1610, https://usegalaxy.org.au/published/workflow?id=52065a4100b11184, https://usegalaxy.org.au/published/workflow?id=5b32e2f0d390a4ba, https://usegalaxy.org.au/published/workflow?id=5cd804644a34c8fd, https://usegalaxy.org.au/published/workflow?id=705658f68ae73930, https://usegalaxy.org.au/published/workflow?id=7c343e5b55474d19, https://usegalaxy.org.au/published/workflow?id=7e40485d1ed45b7c, https://usegalaxy.org.au/published/workflow?id=803ef29108e36e58, https://usegalaxy.org.au/published/workflow?id=8abcfe166f1a6cd8, https://usegalaxy.org.au/published/workflow?id=914330feb75ea9ab, https://usegalaxy.org.au/published/workflow?id=b5403e4fff2961f9, https://usegalaxy.org.au/published/workflow?id=c4d23297f6fbf5f3, https://usegalaxy.org.au/published/workflow?id=d78f885b4b86635f, https://usegalaxy.org.au/published/workflow?id=d832905fbaf2ca31, https://usegalaxy.org.au/published/workflow?id=df11f09771e73e04, https://usegalaxy.org.au/published/workflow?id=e5dfeff4a3068f36, https://usegalaxy.org.au/published/workflow?id=f2541030f6d70b59, https://usegalaxy.org.au/published/workflow?id=f83a3cda33131fb8, https://usegalaxy.org/published/workflow?id=0602c14704dbe1ff, https://usegalaxy.org/published/workflow?id=65b4051e722228b8, https://usegalaxy.org/published/workflow?id=bff206b4625375bc, https://usegalaxy.org/published/workflow?id=c8d74054c1820087, https://usegalaxy.org/published/workflow?id=dbe08700353dfc43, https://usegalaxy.org/published/workflow?id=de9c2db125a5ea27, https://usegalaxy.org/published/workflow?id=ec3cc032a90c44f1, https://workflowhub.eu/workflows/1114?version=1, https://workflowhub.eu/workflows/1323?version=1, https://workflowhub.eu/workflows/1504?version=1, https://workflowhub.eu/workflows/1509?version=1, https://workflowhub.eu/workflows/1549?version=1, https://workflowhub.eu/workflows/1578?version=1, https://workflowhub.eu/workflows/1595?version=1, https://workflowhub.eu/workflows/1617?version=1, https://workflowhub.eu/workflows/1621?version=1, https://workflowhub.eu/workflows/1626?version=1, https://workflowhub.eu/workflows/221?version=3, https://workflowhub.eu/workflows/225?version=1, https://workflowhub.eu/workflows/226?version=1, https://workflowhub.eu/workflows/237?version=2, https://workflowhub.eu/workflows/403?version=9, https://workflowhub.eu/workflows/750?version=2, https://workflowhub.eu/workflows/794?version=2 |
assembly/chloroplast-assembly, assembly/debruijn-graph-assembly, assembly/hifi-assembly, assembly/largegenome, genome-annotation/annotation-with-maker, genome-annotation/annotation-with-maker-short, genome-annotation/braker3 |
|
fastani |
fastani |
Fast alignment-free computation of whole-genome Average Nucleotide Identity |
2020-02-17 |
https://github.com/ParBLiSS/FastANI |
1.3 |
fastani |
1.34 |
To update |
Sequence Analysis |
Genome alignment, Sequence similarity search |
Genome alignment, Sequence similarity search |
Microbiology, Genetic variation |
Microbiology, Genetic variation |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastani |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastani |
fastani |
FastANI |
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two microbial genomes. FastANI supports pairwise comparison of both complete and draft genome assemblies. |
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
744 |
744 |
24894 |
24894 |
0 |
0 |
0 |
0 |
37 |
37 |
1177 |
1177 |
51 |
51 |
843 |
843 |
26914 |
26914 |
832 |
832 |
https://usegalaxy.eu/published/workflow?id=bf48b0eb15e8ff75 |
|
|
fastk |
fastk_fastk, fastk_histex, fastk_logex |
FastK: A K-mer counter (for HQ assembly data sets) |
2024-05-03 |
https://github.com/thegenemyers/FASTK |
1.1.0 |
fastk |
1.1.0 |
Up-to-date |
Assembly |
k-mer counting, Sequence analysis |
k-mer counting, Sequence analysis |
Genomics, Sequence analysis |
Genomics, Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastk |
fastk |
FASTK |
FastK is a k‑mer counter that is optimized for processing high quality DNA assembly data sets such as those produced with an Illumina instrument or a PacBio run in HiFi mode. |
|
3 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
19 |
19 |
156 |
156 |
5 |
5 |
12 |
12 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
168 |
168 |
24 |
24 |
|
|
|
fastp |
fastp |
Fast all-in-one preprocessing for FASTQ files |
2018-03-07 |
https://github.com/OpenGene/fastp |
1.0.1 |
fastp |
1.0.1 |
Up-to-date |
Sequence Analysis |
Sequencing quality control, Sequence contamination filtering |
Sequence contamination filtering |
Sequence analysis, Probes and primers |
Probes and primers |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastp |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastp |
fastp |
fastp |
A tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
8030 |
8192 |
1196298 |
1200047 |
12337 |
12428 |
466144 |
467016 |
2529 |
2529 |
92654 |
92654 |
225 |
225 |
18568 |
18568 |
1778285 |
1773664 |
23374 |
23121 |
https://dev.workflowhub.eu/workflows/1064?version=1, https://dev.workflowhub.eu/workflows/1069?version=2, https://dev.workflowhub.eu/workflows/1074?version=2, https://dev.workflowhub.eu/workflows/1087?version=2, https://dev.workflowhub.eu/workflows/1097?version=1, https://dev.workflowhub.eu/workflows/1115?version=2, https://dev.workflowhub.eu/workflows/1132?version=2, https://dev.workflowhub.eu/workflows/1135?version=2, https://dev.workflowhub.eu/workflows/1144?version=2, https://dev.workflowhub.eu/workflows/1178?version=1, https://dev.workflowhub.eu/workflows/1197?version=2, https://dev.workflowhub.eu/workflows/1324?version=3, https://dev.workflowhub.eu/workflows/132?version=1, https://dev.workflowhub.eu/workflows/1344?version=1, https://dev.workflowhub.eu/workflows/143?version=1, https://dev.workflowhub.eu/workflows/144?version=1, https://dev.workflowhub.eu/workflows/145?version=1, https://dev.workflowhub.eu/workflows/146?version=1, https://dev.workflowhub.eu/workflows/195?version=2, https://dev.workflowhub.eu/workflows/196?version=2, https://dev.workflowhub.eu/workflows/197?version=2, https://dev.workflowhub.eu/workflows/198?version=2, https://dev.workflowhub.eu/workflows/38?version=1, https://usegalaxy.eu/published/workflow?id=007ce6405d196df3, https://usegalaxy.eu/published/workflow?id=0189bab68f828d86, https://usegalaxy.eu/published/workflow?id=03d1d2e0dc6e2024, https://usegalaxy.eu/published/workflow?id=04ed3f21de17aa1d, https://usegalaxy.eu/published/workflow?id=0590554db9794d13, https://usegalaxy.eu/published/workflow?id=0599f049e4697839, https://usegalaxy.eu/published/workflow?id=0609a4b1941d1a68, https://usegalaxy.eu/published/workflow?id=07b74e4cf53cb633, https://usegalaxy.eu/published/workflow?id=0882300f7b399587, https://usegalaxy.eu/published/workflow?id=08eb5e55109c4d9c, https://usegalaxy.eu/published/workflow?id=0a82eb8b44d9d502, https://usegalaxy.eu/published/workflow?id=0ab3e47ebd3b520e, https://usegalaxy.eu/published/workflow?id=0abd32dbc5207b88, https://usegalaxy.eu/published/workflow?id=0be293debca8fb9b, https://usegalaxy.eu/published/workflow?id=0c47571d20535426, https://usegalaxy.eu/published/workflow?id=0e5b701ed5ca69a7, https://usegalaxy.eu/published/workflow?id=0f6a7bd5362e4a2b, https://usegalaxy.eu/published/workflow?id=112422839b68db02, https://usegalaxy.eu/published/workflow?id=135e8888872e8413, https://usegalaxy.eu/published/workflow?id=1761092d0e7deece, https://usegalaxy.eu/published/workflow?id=181e751be8dd9abc, https://usegalaxy.eu/published/workflow?id=1842a61fe5f6965f, https://usegalaxy.eu/published/workflow?id=1860e02bcb894a64, https://usegalaxy.eu/published/workflow?id=18c9095fbf5c4517, https://usegalaxy.eu/published/workflow?id=1b43449ed8481892, https://usegalaxy.eu/published/workflow?id=1bc7b5eabea972fd, https://usegalaxy.eu/published/workflow?id=1be0c4adf13cf368, https://usegalaxy.eu/published/workflow?id=1c5588d6ac7f773f, https://usegalaxy.eu/published/workflow?id=1ccc0c9e1c6821bb, https://usegalaxy.eu/published/workflow?id=1d1ebdeddf23bdb9, https://usegalaxy.eu/published/workflow?id=1f9a9a7998ef5ab3, https://usegalaxy.eu/published/workflow?id=212c213f1d8e0154, https://usegalaxy.eu/published/workflow?id=24eaa682897379c8, https://usegalaxy.eu/published/workflow?id=2573209308aaad23, https://usegalaxy.eu/published/workflow?id=25850714d13f0b0f, https://usegalaxy.eu/published/workflow?id=2a39dbc8fc6dd5d3, https://usegalaxy.eu/published/workflow?id=2b25eaebd3987612, https://usegalaxy.eu/published/workflow?id=2c79eee5ca5a3b09, https://usegalaxy.eu/published/workflow?id=2d08a73dd8ff99e9, https://usegalaxy.eu/published/workflow?id=2d64d6571e01809d, https://usegalaxy.eu/published/workflow?id=2d9d4445a1871230, https://usegalaxy.eu/published/workflow?id=2fa2f67603772413, https://usegalaxy.eu/published/workflow?id=309fc4fc2e0da89c, https://usegalaxy.eu/published/workflow?id=318be2b30bf7884c, https://usegalaxy.eu/published/workflow?id=344cd3a3c2ce5302, https://usegalaxy.eu/published/workflow?id=374797e58377c40f, https://usegalaxy.eu/published/workflow?id=37da7b42cb063a3a, https://usegalaxy.eu/published/workflow?id=3949d1d467224b0b, https://usegalaxy.eu/published/workflow?id=39876e9c04aad543, https://usegalaxy.eu/published/workflow?id=3d5b39e454df584b, https://usegalaxy.eu/published/workflow?id=3fb550d7c2bc390a, https://usegalaxy.eu/published/workflow?id=429ae28a178cd07c, https://usegalaxy.eu/published/workflow?id=45fc2dada84d251e, https://usegalaxy.eu/published/workflow?id=461d71caea871db8, https://usegalaxy.eu/published/workflow?id=4643edf74f3eaec3, https://usegalaxy.eu/published/workflow?id=476db04368d5e90c, https://usegalaxy.eu/published/workflow?id=47a0407867a90f95, https://usegalaxy.eu/published/workflow?id=47e14222073e7192, https://usegalaxy.eu/published/workflow?id=487929c7b5be8dc3, https://usegalaxy.eu/published/workflow?id=49ce9e738fadef4a, https://usegalaxy.eu/published/workflow?id=4a39d38fde81e35d, https://usegalaxy.eu/published/workflow?id=4a764275d4bf9f31, https://usegalaxy.eu/published/workflow?id=4b4bfc79205d83f1, https://usegalaxy.eu/published/workflow?id=4c75ab0be3c56494, https://usegalaxy.eu/published/workflow?id=4d97068a725c975c, https://usegalaxy.eu/published/workflow?id=4dd7f6e1c1e7f96a, https://usegalaxy.eu/published/workflow?id=50758631a0e81a7a, https://usegalaxy.eu/published/workflow?id=529f30e894beacc2, https://usegalaxy.eu/published/workflow?id=52bdf400f97c5770, https://usegalaxy.eu/published/workflow?id=52cafb62f5bf6e25, https://usegalaxy.eu/published/workflow?id=534b81d48df6b507, https://usegalaxy.eu/published/workflow?id=53de0e742573e588, https://usegalaxy.eu/published/workflow?id=56868483be18f1a1, https://usegalaxy.eu/published/workflow?id=57769c948e14f9ac, https://usegalaxy.eu/published/workflow?id=579dd1e95e76402f, https://usegalaxy.eu/published/workflow?id=57d3109f32defa3b, https://usegalaxy.eu/published/workflow?id=5b00ef046439d757, https://usegalaxy.eu/published/workflow?id=5be158931abca947, https://usegalaxy.eu/published/workflow?id=5c15f251642bfa1f, https://usegalaxy.eu/published/workflow?id=5ec0d6d108e02e1a, https://usegalaxy.eu/published/workflow?id=606a04c4aa95d010, https://usegalaxy.eu/published/workflow?id=60e4d0db3164f037, https://usegalaxy.eu/published/workflow?id=614807d57979554c, https://usegalaxy.eu/published/workflow?id=61e592bafd9d2b58, https://usegalaxy.eu/published/workflow?id=625aafb9cf16b03f, https://usegalaxy.eu/published/workflow?id=628062a8cf93261f, https://usegalaxy.eu/published/workflow?id=629e57958afed44c, https://usegalaxy.eu/published/workflow?id=63eed9c2e025a723, https://usegalaxy.eu/published/workflow?id=6be946c7ec91835e, https://usegalaxy.eu/published/workflow?id=6dbac47941a804da, https://usegalaxy.eu/published/workflow?id=6e1fe7372e93fae0, https://usegalaxy.eu/published/workflow?id=71a9224fa6f3da9d, https://usegalaxy.eu/published/workflow?id=72e3e5fdc766e24a, https://usegalaxy.eu/published/workflow?id=74f19aff1b9cdd6b, https://usegalaxy.eu/published/workflow?id=762c64a9f588a420, https://usegalaxy.eu/published/workflow?id=766ebba7a2aee494, https://usegalaxy.eu/published/workflow?id=7b7ef222ac4f9887, https://usegalaxy.eu/published/workflow?id=7baae0775071c7ec, https://usegalaxy.eu/published/workflow?id=7bdd9ad918edab0b, https://usegalaxy.eu/published/workflow?id=7c9b182da21748c7, https://usegalaxy.eu/published/workflow?id=7ef7b460143211df, https://usegalaxy.eu/published/workflow?id=81122d30c64a52a6, https://usegalaxy.eu/published/workflow?id=87fea062a9646a31, https://usegalaxy.eu/published/workflow?id=884a4415b669690c, https://usegalaxy.eu/published/workflow?id=889f2782ad82bd69, https://usegalaxy.eu/published/workflow?id=88b382a6f56a6329, https://usegalaxy.eu/published/workflow?id=8ee3b635c1c380cd, https://usegalaxy.eu/published/workflow?id=8f415b0c409f56f7, https://usegalaxy.eu/published/workflow?id=910570a2caafe462, https://usegalaxy.eu/published/workflow?id=9141c6449595c6a1, https://usegalaxy.eu/published/workflow?id=9219557de92e0203, https://usegalaxy.eu/published/workflow?id=93d1035a307fe63d, https://usegalaxy.eu/published/workflow?id=94c3d329c31c712f, https://usegalaxy.eu/published/workflow?id=96c61a584cb2e5e9, https://usegalaxy.eu/published/workflow?id=987a2abb5cd56e57, https://usegalaxy.eu/published/workflow?id=98bfad0c684011e9, https://usegalaxy.eu/published/workflow?id=98d4adf5774e274e, https://usegalaxy.eu/published/workflow?id=9a60ecf98d4f8134, https://usegalaxy.eu/published/workflow?id=9b025479fade745d, https://usegalaxy.eu/published/workflow?id=9eda857e4141d56e, https://usegalaxy.eu/published/workflow?id=9fddc44294236e8f, https://usegalaxy.eu/published/workflow?id=9feebfc6c34da287, https://usegalaxy.eu/published/workflow?id=a15dabcadb63b46d, https://usegalaxy.eu/published/workflow?id=a2d4221ad117c378, https://usegalaxy.eu/published/workflow?id=a31100610fba17a1, https://usegalaxy.eu/published/workflow?id=a4e3667f6879bfaf, https://usegalaxy.eu/published/workflow?id=a6c666f3028ea440, https://usegalaxy.eu/published/workflow?id=a6f4371ef9bc1aab, https://usegalaxy.eu/published/workflow?id=a705370bc2c13d5c, https://usegalaxy.eu/published/workflow?id=a72d2667a53830f7, https://usegalaxy.eu/published/workflow?id=a9e1a6b90dbd2518, https://usegalaxy.eu/published/workflow?id=aafcfcb585c5ca75, https://usegalaxy.eu/published/workflow?id=ab8924d78fa5ef8f, https://usegalaxy.eu/published/workflow?id=ada52ba09b462567, https://usegalaxy.eu/published/workflow?id=ae1ca223d6667070, https://usegalaxy.eu/published/workflow?id=aff44f1665a14e23, https://usegalaxy.eu/published/workflow?id=b02d90c32dc67730, https://usegalaxy.eu/published/workflow?id=b14845359b702444, https://usegalaxy.eu/published/workflow?id=b37800d990cceb83, https://usegalaxy.eu/published/workflow?id=b41ff6d8fb5a0878, https://usegalaxy.eu/published/workflow?id=b426e137396acb14, https://usegalaxy.eu/published/workflow?id=b5ffba506152b1a1, https://usegalaxy.eu/published/workflow?id=b6eb5fe7e37f680a, https://usegalaxy.eu/published/workflow?id=b77e3b08092fa73e, https://usegalaxy.eu/published/workflow?id=b7a3cbcd32734e8b, https://usegalaxy.eu/published/workflow?id=b801e745205892f5, https://usegalaxy.eu/published/workflow?id=b97532c398b821a2, https://usegalaxy.eu/published/workflow?id=bb63b5bb983fd49c, https://usegalaxy.eu/published/workflow?id=bcb8a8c5bff790ab, https://usegalaxy.eu/published/workflow?id=bfb762c96328e3c1, https://usegalaxy.eu/published/workflow?id=c084c2009f6b2d0a, https://usegalaxy.eu/published/workflow?id=c14d2e8b3c191bc4, https://usegalaxy.eu/published/workflow?id=c2af7a5dbfb5b023, https://usegalaxy.eu/published/workflow?id=c2f0decb06f0bb90, https://usegalaxy.eu/published/workflow?id=c38e3ac59d8b86d6, https://usegalaxy.eu/published/workflow?id=c789ab71876c6ead, https://usegalaxy.eu/published/workflow?id=c885eaabae612d6d, https://usegalaxy.eu/published/workflow?id=c930a54a30dcc7e3, https://usegalaxy.eu/published/workflow?id=cb2df493f5e334f7, https://usegalaxy.eu/published/workflow?id=cbc16cb5db98ab21, https://usegalaxy.eu/published/workflow?id=cd25f70f71683ab6, https://usegalaxy.eu/published/workflow?id=cd926dd6b70e72d6, https://usegalaxy.eu/published/workflow?id=d2f75f70c33394ee, https://usegalaxy.eu/published/workflow?id=d503dee6f9b35a18, https://usegalaxy.eu/published/workflow?id=d5333903ba947adf, https://usegalaxy.eu/published/workflow?id=d88145e7475e0b7b, https://usegalaxy.eu/published/workflow?id=daf47855afa73de8, https://usegalaxy.eu/published/workflow?id=dd3193aaaf08e798, https://usegalaxy.eu/published/workflow?id=deec04097a871646, https://usegalaxy.eu/published/workflow?id=e62b659a5da9734e, https://usegalaxy.eu/published/workflow?id=ebb131f2a6172081, https://usegalaxy.eu/published/workflow?id=ecab5b2c3ff3df9d, https://usegalaxy.eu/published/workflow?id=ecf48fa50af560a0, https://usegalaxy.eu/published/workflow?id=ed20bd120064bab0, https://usegalaxy.eu/published/workflow?id=ee6dc47660540ba6, https://usegalaxy.eu/published/workflow?id=f0ac222d3e965ab0, https://usegalaxy.eu/published/workflow?id=f12fb4a95954c448, https://usegalaxy.eu/published/workflow?id=f54b4d76f7f9a589, https://usegalaxy.eu/published/workflow?id=f97e6fe1fcbc53a7, https://usegalaxy.eu/published/workflow?id=fb18c5d14acb1b36, https://usegalaxy.eu/published/workflow?id=fc216dfb0ec9ed41, https://usegalaxy.eu/published/workflow?id=fcf745185d6e0ea4, https://usegalaxy.eu/published/workflow?id=fde21b5f5c169114, https://usegalaxy.eu/published/workflow?id=fe8a1a970fd0d4cd, https://usegalaxy.eu/published/workflow?id=ff4d5beb6ce1809d, https://usegalaxy.fr/published/workflow?id=2345fad7dac13daa, https://usegalaxy.fr/published/workflow?id=54b48eeeed3564dd, https://usegalaxy.fr/published/workflow?id=57b5a45c9f71a09c, https://usegalaxy.fr/published/workflow?id=591c57173e259ca6, https://usegalaxy.fr/published/workflow?id=61235264d5d2f666, https://usegalaxy.fr/published/workflow?id=727cfdb7c79287d1, https://usegalaxy.fr/published/workflow?id=776ef2fa51094ba6, https://usegalaxy.fr/published/workflow?id=7d27dd394b921846, https://usegalaxy.fr/published/workflow?id=98529cff0ef36b91, https://usegalaxy.fr/published/workflow?id=bffee40c87c7b20a, https://usegalaxy.fr/published/workflow?id=ca0bd0e42cb774f9, https://usegalaxy.fr/published/workflow?id=d0d12c0b80c286f9, https://usegalaxy.fr/published/workflow?id=e0b225d4b2556365, https://usegalaxy.fr/published/workflow?id=e3c04a30258421aa, https://usegalaxy.org.au/published/workflow?id=06ba34da322f46f1, https://usegalaxy.org.au/published/workflow?id=094a545d44ce28cc, https://usegalaxy.org.au/published/workflow?id=0c6f7bfc826433c4, https://usegalaxy.org.au/published/workflow?id=13ce18408ee7acc9, https://usegalaxy.org.au/published/workflow?id=1dd4392c51766383, https://usegalaxy.org.au/published/workflow?id=25403321a649a92b, https://usegalaxy.org.au/published/workflow?id=25d52afddaa3451b, https://usegalaxy.org.au/published/workflow?id=27205feb28b0ce06, https://usegalaxy.org.au/published/workflow?id=2b2ce7e1206d177d, https://usegalaxy.org.au/published/workflow?id=30a601039d24e2eb, https://usegalaxy.org.au/published/workflow?id=31dbd313e5c8160b, https://usegalaxy.org.au/published/workflow?id=3223ceaa2b58d940, https://usegalaxy.org.au/published/workflow?id=39b464084d930a33, https://usegalaxy.org.au/published/workflow?id=3c1b1f210c7c292b, https://usegalaxy.org.au/published/workflow?id=3c657dd766d02f6a, https://usegalaxy.org.au/published/workflow?id=3c7b55daae7c119b, https://usegalaxy.org.au/published/workflow?id=3f39cf407c185724, https://usegalaxy.org.au/published/workflow?id=41bd0340dcde60ec, https://usegalaxy.org.au/published/workflow?id=47ce6a2d30887637, https://usegalaxy.org.au/published/workflow?id=48a60965b6b3ff54, https://usegalaxy.org.au/published/workflow?id=49b5c35b9723fa62, https://usegalaxy.org.au/published/workflow?id=4bc8ac41ecff7daf, https://usegalaxy.org.au/published/workflow?id=4c7e0703aace6aa3, https://usegalaxy.org.au/published/workflow?id=51b745f8c964e5c6, https://usegalaxy.org.au/published/workflow?id=557601292ea0f6f3, https://usegalaxy.org.au/published/workflow?id=69d91340fc7effa2, https://usegalaxy.org.au/published/workflow?id=6a04c54236f30e8d, https://usegalaxy.org.au/published/workflow?id=6b1b0a945d367b4c, https://usegalaxy.org.au/published/workflow?id=6e1e24f9e0326930, https://usegalaxy.org.au/published/workflow?id=749d8f2d26e0a111, https://usegalaxy.org.au/published/workflow?id=7563b3ef697a69fd, https://usegalaxy.org.au/published/workflow?id=76bb6bde19975e05, https://usegalaxy.org.au/published/workflow?id=77951619443e6f87, https://usegalaxy.org.au/published/workflow?id=7a0c4804e4d4c905, https://usegalaxy.org.au/published/workflow?id=7b203d52f496e2c7, https://usegalaxy.org.au/published/workflow?id=7c22d726e1716f4b, https://usegalaxy.org.au/published/workflow?id=7fd58f5fc93f414e, https://usegalaxy.org.au/published/workflow?id=810242a3dc4f6170, https://usegalaxy.org.au/published/workflow?id=811bbada546850bd, https://usegalaxy.org.au/published/workflow?id=813a4938397cf6ee, https://usegalaxy.org.au/published/workflow?id=84c98a23187d2a36, https://usegalaxy.org.au/published/workflow?id=888eb87b62c4e6dd, https://usegalaxy.org.au/published/workflow?id=888f8377eb6eabf2, https://usegalaxy.org.au/published/workflow?id=8b955274ca3ca3dc, https://usegalaxy.org.au/published/workflow?id=92fcdd490831c6c5, https://usegalaxy.org.au/published/workflow?id=932bad88f8dc8d33, https://usegalaxy.org.au/published/workflow?id=94c7fdcbbc7b428a, https://usegalaxy.org.au/published/workflow?id=9c60b83feaa22415, https://usegalaxy.org.au/published/workflow?id=a29670ff0ecb1a38, https://usegalaxy.org.au/published/workflow?id=ae894cff1d1aba01, https://usegalaxy.org.au/published/workflow?id=b03b577156e4db5b, https://usegalaxy.org.au/published/workflow?id=b432a1312859edd2, https://usegalaxy.org.au/published/workflow?id=b517cabb697491a0, https://usegalaxy.org.au/published/workflow?id=b59fada651043735, https://usegalaxy.org.au/published/workflow?id=b7aa22291322e505, https://usegalaxy.org.au/published/workflow?id=ba30cc4a84c449f9, https://usegalaxy.org.au/published/workflow?id=ba7a9d4c857d26b7, https://usegalaxy.org.au/published/workflow?id=baa763dbdf6afb71, https://usegalaxy.org.au/published/workflow?id=bcf230e526632064, https://usegalaxy.org.au/published/workflow?id=bd1cf22d47389742, https://usegalaxy.org.au/published/workflow?id=be9213411c520096, https://usegalaxy.org.au/published/workflow?id=bf80ef6e5f37deb7, https://usegalaxy.org.au/published/workflow?id=c1ce3f2ae7c81c3e, https://usegalaxy.org.au/published/workflow?id=c38b998d3e90c329, https://usegalaxy.org.au/published/workflow?id=c5f000229dd93599, https://usegalaxy.org.au/published/workflow?id=c8d18e2c03dca796, https://usegalaxy.org.au/published/workflow?id=c9156ca3df2b595c, https://usegalaxy.org.au/published/workflow?id=ca7fc6e2adbf1f26, https://usegalaxy.org.au/published/workflow?id=ccf936c5b2f2c2f3, https://usegalaxy.org.au/published/workflow?id=ccfae75390038ced, https://usegalaxy.org.au/published/workflow?id=d3521c05077192df, https://usegalaxy.org.au/published/workflow?id=d35d05be576e8b13, https://usegalaxy.org.au/published/workflow?id=d78f885b4b86635f, https://usegalaxy.org.au/published/workflow?id=d7c329b354f4426d, https://usegalaxy.org.au/published/workflow?id=dccc8fb49d61ac33, https://usegalaxy.org.au/published/workflow?id=e439a0e17a90d24c, https://usegalaxy.org.au/published/workflow?id=f2541030f6d70b59, https://usegalaxy.org.au/published/workflow?id=fc3c83b11f527977, https://usegalaxy.org.au/published/workflow?id=fca05a51c9c91df4, https://usegalaxy.org.au/published/workflow?id=fe4e34a407157389, https://usegalaxy.org.au/published/workflow?id=fe5542c99cdc57ce, https://usegalaxy.org.au/published/workflow?id=fedf2874752ac1f6, https://usegalaxy.org/published/workflow?id=0e5a3899ae97076b, https://usegalaxy.org/published/workflow?id=0f8b4fd0bf276968, https://usegalaxy.org/published/workflow?id=0fa2ce12c2874b1d, https://usegalaxy.org/published/workflow?id=10c2136973c88d8a, https://usegalaxy.org/published/workflow?id=1518c8c50747a1c1, https://usegalaxy.org/published/workflow?id=15a0e22570f71098, https://usegalaxy.org/published/workflow?id=195f7acb16c5a2e2, https://usegalaxy.org/published/workflow?id=1be5c982c2d36a6c, https://usegalaxy.org/published/workflow?id=1ddabc7d272dc702, https://usegalaxy.org/published/workflow?id=1f48b44fa22ac5fc, https://usegalaxy.org/published/workflow?id=20b7ae4b517a80fd, https://usegalaxy.org/published/workflow?id=21161075002d6778, https://usegalaxy.org/published/workflow?id=2125db88b4a71c09, https://usegalaxy.org/published/workflow?id=24663ad42c78106c, https://usegalaxy.org/published/workflow?id=26b35874b9e32355, https://usegalaxy.org/published/workflow?id=2a782ad24271f570, https://usegalaxy.org/published/workflow?id=307d19833ffb5395, https://usegalaxy.org/published/workflow?id=323c651ca583c9e5, https://usegalaxy.org/published/workflow?id=33ae58f05e5e1d60, https://usegalaxy.org/published/workflow?id=34ab5572a9547bfe, https://usegalaxy.org/published/workflow?id=35c2626849348f2c, https://usegalaxy.org/published/workflow?id=3ad9cdcda44b7dfb, https://usegalaxy.org/published/workflow?id=3f92474cd16ca314, https://usegalaxy.org/published/workflow?id=42bc3a770f0ab6b8, https://usegalaxy.org/published/workflow?id=4357180d40560019, https://usegalaxy.org/published/workflow?id=4458439388155d92, https://usegalaxy.org/published/workflow?id=4b41a8247f52c463, https://usegalaxy.org/published/workflow?id=4cf8cc42e97b2da6, https://usegalaxy.org/published/workflow?id=4de095b92ed661ac, https://usegalaxy.org/published/workflow?id=4f698eaeef30e364, https://usegalaxy.org/published/workflow?id=5336b9d26a083983, https://usegalaxy.org/published/workflow?id=53dda64a5a6ebd54, https://usegalaxy.org/published/workflow?id=53fea86eb74c224b, https://usegalaxy.org/published/workflow?id=5415e85a86898e41, https://usegalaxy.org/published/workflow?id=574e42683dc3961b, https://usegalaxy.org/published/workflow?id=57f4c6f5206edfcb, https://usegalaxy.org/published/workflow?id=58a7a02dade085cf, https://usegalaxy.org/published/workflow?id=5a610d5a42d50cf3, https://usegalaxy.org/published/workflow?id=5b3e2ddf525da25d, https://usegalaxy.org/published/workflow?id=5bcd1aade71a8035, https://usegalaxy.org/published/workflow?id=60f0d0d5d6e93941, https://usegalaxy.org/published/workflow?id=612452c925d723b7, https://usegalaxy.org/published/workflow?id=623fc80c7f91a33a, https://usegalaxy.org/published/workflow?id=668df61f85b5b166, https://usegalaxy.org/published/workflow?id=6b11d738ee57f245, https://usegalaxy.org/published/workflow?id=786aa9e2bd723629, https://usegalaxy.org/published/workflow?id=7a26069c2939bef9, https://usegalaxy.org/published/workflow?id=7d6617b8316cee19, https://usegalaxy.org/published/workflow?id=7dde0721a382ea3e, https://usegalaxy.org/published/workflow?id=7e2651e5ed17e3db, https://usegalaxy.org/published/workflow?id=88d0b64011c3148c, https://usegalaxy.org/published/workflow?id=8b81b9a3b49bbf98, https://usegalaxy.org/published/workflow?id=8bcab83874cbc75c, https://usegalaxy.org/published/workflow?id=8e1c6ad6ff623015, https://usegalaxy.org/published/workflow?id=92875b13082b5568, https://usegalaxy.org/published/workflow?id=953d9cbe05e632a8, https://usegalaxy.org/published/workflow?id=97263f3308077ff0, https://usegalaxy.org/published/workflow?id=98286b6154e1b57f, https://usegalaxy.org/published/workflow?id=98b2ac8fc75781f8, https://usegalaxy.org/published/workflow?id=9adf8691809326e5, https://usegalaxy.org/published/workflow?id=9f68718f025bed30, https://usegalaxy.org/published/workflow?id=9fc9f1db50019929, https://usegalaxy.org/published/workflow?id=a71fcbc60caae8b6, https://usegalaxy.org/published/workflow?id=a743746151101352, https://usegalaxy.org/published/workflow?id=a8b9252fad5fe06a, https://usegalaxy.org/published/workflow?id=aadccbe72752c129, https://usegalaxy.org/published/workflow?id=b26501a4a85bfdeb, https://usegalaxy.org/published/workflow?id=b300d028da9b8396, https://usegalaxy.org/published/workflow?id=b34ba9b2e4d8f050, https://usegalaxy.org/published/workflow?id=b6a795834009ce06, https://usegalaxy.org/published/workflow?id=b7817a12dbee583c, https://usegalaxy.org/published/workflow?id=badd4b56dbdeaba7, https://usegalaxy.org/published/workflow?id=bbe6f5a45ea5ee5e, https://usegalaxy.org/published/workflow?id=bd355e8ce58a139e, https://usegalaxy.org/published/workflow?id=bf3ccae8d5b6ef58, https://usegalaxy.org/published/workflow?id=c092a3631d68ce38, https://usegalaxy.org/published/workflow?id=c12e6b7896f8e114, https://usegalaxy.org/published/workflow?id=c7b2d2ccc4b0dec5, https://usegalaxy.org/published/workflow?id=cdea4f88ccbd155f, https://usegalaxy.org/published/workflow?id=cdf5dffbed938d49, https://usegalaxy.org/published/workflow?id=d3428dd172a78102, https://usegalaxy.org/published/workflow?id=d4ea6cdd40522eb1, https://usegalaxy.org/published/workflow?id=d4f0a7ccb09f1e55, https://usegalaxy.org/published/workflow?id=d817e98cef94bc96, https://usegalaxy.org/published/workflow?id=d96bd5c9fb553f2c, https://usegalaxy.org/published/workflow?id=db01ac5b0dc50cd4, https://usegalaxy.org/published/workflow?id=de9bf4c1024f8d53, https://usegalaxy.org/published/workflow?id=dfa8c64634aec75c, https://usegalaxy.org/published/workflow?id=dfd73857c0eb2a21, https://usegalaxy.org/published/workflow?id=e12324f5e3b930fd, https://usegalaxy.org/published/workflow?id=e282f505ba9f729f, https://usegalaxy.org/published/workflow?id=e55ca98817c1855e, https://usegalaxy.org/published/workflow?id=e67b6da41e1e6932, https://usegalaxy.org/published/workflow?id=e7ce46762faccaac, https://usegalaxy.org/published/workflow?id=eb3409cc73e392a8, https://usegalaxy.org/published/workflow?id=eb4f7dbca0114270, https://usegalaxy.org/published/workflow?id=f378960ee55f567e, https://usegalaxy.org/published/workflow?id=ffae9c47980a5170, https://workflowhub.eu/workflows/100?version=1, https://workflowhub.eu/workflows/1035?version=1, https://workflowhub.eu/workflows/103?version=1, https://workflowhub.eu/workflows/1052?version=11, https://workflowhub.eu/workflows/1061?version=1, https://workflowhub.eu/workflows/1103?version=3, https://workflowhub.eu/workflows/1104?version=2, https://workflowhub.eu/workflows/110?version=11, https://workflowhub.eu/workflows/111?version=5, https://workflowhub.eu/workflows/112?version=6, https://workflowhub.eu/workflows/113?version=4, https://workflowhub.eu/workflows/1190?version=1, https://workflowhub.eu/workflows/1260?version=2, https://workflowhub.eu/workflows/1272?version=2, https://workflowhub.eu/workflows/1439?version=1, https://workflowhub.eu/workflows/1473?version=1, https://workflowhub.eu/workflows/1492?version=2, https://workflowhub.eu/workflows/1540?version=1, https://workflowhub.eu/workflows/155?version=5, https://workflowhub.eu/workflows/1589?version=1, https://workflowhub.eu/workflows/1602?version=1, https://workflowhub.eu/workflows/1612?version=1, https://workflowhub.eu/workflows/1613?version=1, https://workflowhub.eu/workflows/1616?version=1, https://workflowhub.eu/workflows/1642?version=1, https://workflowhub.eu/workflows/1644?version=1, https://workflowhub.eu/workflows/1647?version=1, https://workflowhub.eu/workflows/1688?version=1, https://workflowhub.eu/workflows/1723?version=1, https://workflowhub.eu/workflows/1738?version=1, https://workflowhub.eu/workflows/1739?version=1, https://workflowhub.eu/workflows/1740?version=1, https://workflowhub.eu/workflows/1741?version=1, https://workflowhub.eu/workflows/224?version=1, https://workflowhub.eu/workflows/346?version=1, https://workflowhub.eu/workflows/353?version=1, https://workflowhub.eu/workflows/357?version=1, https://workflowhub.eu/workflows/35?version=1, https://workflowhub.eu/workflows/36?version=1, https://workflowhub.eu/workflows/37?version=1, https://workflowhub.eu/workflows/38?version=1, https://workflowhub.eu/workflows/39?version=1, https://workflowhub.eu/workflows/40?version=1, https://workflowhub.eu/workflows/439?version=3, https://workflowhub.eu/workflows/517?version=1, https://workflowhub.eu/workflows/518?version=1, https://workflowhub.eu/workflows/519?version=1, https://workflowhub.eu/workflows/601?version=2, https://workflowhub.eu/workflows/68?version=1 |
assembly/assembly-with-preprocessing, assembly/largegenome, assembly/mrsa-illumina, assembly/mrsa-nanopore, ecology/eDNA-taxonomic-analysis, introduction/galaxy-intro-ngs-data-managment, introduction/vsi_qc, microbiome/beer-data-analysis, microbiome/nanopore-16S-metagenomics, microbiome/pathogen-detection-from-nanopore-foodborne-data, sequence-analysis/quality-contamination-control, transcriptomics/differential-isoform-expression, variant-analysis/aiv-analysis, variant-analysis/pox-tiled-amplicon, variant-analysis/sars-cov-2, variant-analysis/tb-variant-analysis |
|
fastplong |
fastplong |
Fastplong is used for ultrafast preprocessing and quality control for long reads (Nanopore, PacBio, Cyclone, etc.). |
2025-05-06 |
https://github.com/OpenGene/fastplong |
0.3.0 |
fastplong |
0.3.0 |
Up-to-date |
Sequence Analysis, Assembly |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastplong |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastplong |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
https://usegalaxy.org.au/published/workflow?id=aa1d123c0a0929f3 |
|
|
fastq_combiner |
fastq_combiner |
Combine FASTA and QUAL into FASTQ |
2019-06-21 |
https://github.com/galaxyproject/sequence_utils |
1.1.5 |
galaxy_sequence_utils |
1.2.0 |
To update |
Fastq Manipulation, Fasta Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_combiner |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/galaxy_sequence_utils/fastq_combiner |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
237 |
274 |
8845 |
9114 |
938 |
3043 |
52480 |
76117 |
76 |
89 |
1922 |
2155 |
15 |
15 |
51 |
51 |
87437 |
63298 |
3421 |
1266 |
https://usegalaxy.eu/published/workflow?id=4d32b1b3ac0a7161, https://usegalaxy.eu/published/workflow?id=a8417c63e9e22afb, https://usegalaxy.eu/published/workflow?id=d4a95588e6e50893, https://usegalaxy.eu/published/workflow?id=e423c80058601e78, https://usegalaxy.org/published/workflow?id=5b2a0da883be03b7, https://usegalaxy.org/published/workflow?id=81183f40d2f3e395 |
|
|
fastq_dl |
fastq_dl |
Download FASTQ files from ENA. |
2024-11-14 |
https://github.com/rpetit3/fastq-dl |
3.0.1 |
fastq-dl |
3.0.1 |
Up-to-date |
Data Source |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastq_dl |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastq_dl |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
15 |
15 |
90 |
90 |
23 |
23 |
58 |
58 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
148 |
148 |
38 |
38 |
https://usegalaxy.eu/published/workflow?id=32219131f48494bf, https://usegalaxy.eu/published/workflow?id=c8d70d4402852fb5, https://usegalaxy.org/published/workflow?id=77de7101effbff3d, https://usegalaxy.org/published/workflow?id=8e863bbef37cc36b, https://workflowhub.eu/workflows/1274?version=2 |
|
|
fastq_filter |
fastq_filter |
Filter FASTQ reads by quality score and length |
2019-06-21 |
https://github.com/galaxyproject/sequence_utils |
1.1.5 |
galaxy_sequence_utils |
1.2.0 |
To update |
Fastq Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_filter |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/galaxy_sequence_utils/fastq_filter |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
752 |
876 |
17948 |
22337 |
2636 |
9439 |
37231 |
124263 |
225 |
309 |
4973 |
6321 |
73 |
73 |
246 |
246 |
153167 |
60398 |
10697 |
3686 |
https://usegalaxy.eu/published/workflow?id=0609a4b1941d1a68, https://usegalaxy.eu/published/workflow?id=76e9cd837ea5e7da, https://usegalaxy.eu/published/workflow?id=9fddc44294236e8f, https://usegalaxy.eu/published/workflow?id=c7f34c67c9054234, https://usegalaxy.eu/published/workflow?id=d6ff6be33b8bfe85, https://usegalaxy.eu/published/workflow?id=da19c0eaa757fa39, https://usegalaxy.eu/published/workflow?id=e271d95a671182ec, https://usegalaxy.eu/published/workflow?id=f39528391f22aab0, https://usegalaxy.org.au/published/workflow?id=8d47811c6154d347, https://usegalaxy.org/published/workflow?id=091896754bcc8ec1, https://usegalaxy.org/published/workflow?id=14f62361a15f8a24, https://usegalaxy.org/published/workflow?id=20b7ae4b517a80fd, https://usegalaxy.org/published/workflow?id=344a79d4f12d2cff, https://usegalaxy.org/published/workflow?id=3767c9c07462b777, https://usegalaxy.org/published/workflow?id=3f8e0395007c8e9e, https://usegalaxy.org/published/workflow?id=4266aa248d5b1ea4, https://usegalaxy.org/published/workflow?id=46f184a0e95f3c1c, https://usegalaxy.org/published/workflow?id=48adcc44fe62a99c, https://usegalaxy.org/published/workflow?id=5004f1087f5e87db, https://usegalaxy.org/published/workflow?id=535484d6482b80f4, https://usegalaxy.org/published/workflow?id=5f878c4cc3bff68c, https://usegalaxy.org/published/workflow?id=61d324b1eca6300e, https://usegalaxy.org/published/workflow?id=85c3a1fc1d3d3df8, https://usegalaxy.org/published/workflow?id=a71fcbc60caae8b6, https://usegalaxy.org/published/workflow?id=afb67b4b9952f57d, https://usegalaxy.org/published/workflow?id=bb9ee8e05f7042a9, https://usegalaxy.org/published/workflow?id=d860749fd34809d7, https://usegalaxy.org/published/workflow?id=ea69f4fbdbb88c71, https://workflowhub.eu/workflows/1271?version=3, https://workflowhub.eu/workflows/1272?version=2 |
ecology/ENA_Biodiv_submission |
|
fastq_groomer |
fastq_groomer |
Convert between various FASTQ quality formats. |
2019-06-21 |
https://github.com/galaxyproject/sequence_utils |
1.1.5 |
galaxy_sequence_utils |
1.2.0 |
To update |
Fastq Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_groomer |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/galaxy_sequence_utils/fastq_groomer |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
2831 |
3358 |
100541 |
113228 |
8822 |
45341 |
165562 |
906976 |
682 |
1118 |
15654 |
26912 |
190 |
192 |
7648 |
7736 |
1054852 |
289405 |
50009 |
12525 |
https://dev.workflowhub.eu/workflows/1274?version=2, https://dev.workflowhub.eu/workflows/1287?version=2, https://dev.workflowhub.eu/workflows/1292?version=2, https://usegalaxy.eu/published/workflow?id=2cf09adb1ed6c3ec, https://usegalaxy.eu/published/workflow?id=70b1c40b818cc320, https://usegalaxy.eu/published/workflow?id=7117dbcbd5d12de5, https://usegalaxy.eu/published/workflow?id=7ab70660e6235cf0, https://usegalaxy.eu/published/workflow?id=994e5ff1df7d6c9e, https://usegalaxy.eu/published/workflow?id=a52c5dd688def9ba, https://usegalaxy.eu/published/workflow?id=afad9a17a80bb26d, https://usegalaxy.eu/published/workflow?id=b4de76c0a4d0e23a, https://usegalaxy.eu/published/workflow?id=c7e1aee909c9b483, https://usegalaxy.eu/published/workflow?id=cf9dc7ad34c81fa2, https://usegalaxy.eu/published/workflow?id=eb3cfa4d1f05fc0e, https://usegalaxy.eu/published/workflow?id=f39528391f22aab0, https://usegalaxy.fr/published/workflow?id=41264142d3c00016, https://usegalaxy.fr/published/workflow?id=8b1678200a1d157a, https://usegalaxy.org.au/published/workflow?id=189c584ea4bde59a, https://usegalaxy.org.au/published/workflow?id=1ac197bae296b2bf, https://usegalaxy.org.au/published/workflow?id=39bb22274ede7500, https://usegalaxy.org.au/published/workflow?id=470eb26144325590, https://usegalaxy.org.au/published/workflow?id=581c455f74aa55a4, https://usegalaxy.org.au/published/workflow?id=60c5675ed2f4a7d8, https://usegalaxy.org.au/published/workflow?id=e045a6064ad5fdc4, https://usegalaxy.org/published/workflow?id=02d49c5f0d9aa010, https://usegalaxy.org/published/workflow?id=035c28a247976f2c, https://usegalaxy.org/published/workflow?id=0599241ce8eae217, https://usegalaxy.org/published/workflow?id=07739fbbd53755f6, https://usegalaxy.org/published/workflow?id=091896754bcc8ec1, https://usegalaxy.org/published/workflow?id=0b3af7e9ac69a6b7, https://usegalaxy.org/published/workflow?id=121f37a5c0562f8c, https://usegalaxy.org/published/workflow?id=14410527253c6f40, https://usegalaxy.org/published/workflow?id=14f62361a15f8a24, https://usegalaxy.org/published/workflow?id=165c8a58baffe64c, https://usegalaxy.org/published/workflow?id=1708fdfd1d485434, https://usegalaxy.org/published/workflow?id=17a969fa9ac02cec, https://usegalaxy.org/published/workflow?id=1b385fd45ee48614, https://usegalaxy.org/published/workflow?id=1b4ac2bc54435ae4, https://usegalaxy.org/published/workflow?id=1cd08f3549cf5589, https://usegalaxy.org/published/workflow?id=21b416bcf0b8c8cf, https://usegalaxy.org/published/workflow?id=246da6fd63cbd49d, https://usegalaxy.org/published/workflow?id=24adb067c82862fa, https://usegalaxy.org/published/workflow?id=270e2cb6b02afc9c, https://usegalaxy.org/published/workflow?id=295f4687454081be, https://usegalaxy.org/published/workflow?id=29a80db9f3208c29, https://usegalaxy.org/published/workflow?id=2cbcfeb772f348c9, https://usegalaxy.org/published/workflow?id=31dea5361ec9421c, https://usegalaxy.org/published/workflow?id=344a79d4f12d2cff, https://usegalaxy.org/published/workflow?id=3767c9c07462b777, https://usegalaxy.org/published/workflow?id=38f5ab09779a6495, https://usegalaxy.org/published/workflow?id=399b4543d26990f2, https://usegalaxy.org/published/workflow?id=3d5347f1e8ee7db2, https://usegalaxy.org/published/workflow?id=3e2bbafb8c6580af, https://usegalaxy.org/published/workflow?id=414fa13b613b33d8, https://usegalaxy.org/published/workflow?id=4266aa248d5b1ea4, https://usegalaxy.org/published/workflow?id=4703371e94b67347, https://usegalaxy.org/published/workflow?id=483a98be358ce21c, https://usegalaxy.org/published/workflow?id=486ee20613d58dcf, https://usegalaxy.org/published/workflow?id=48adcc44fe62a99c, https://usegalaxy.org/published/workflow?id=48dd684196c65735, https://usegalaxy.org/published/workflow?id=4a9b0534b1c88609, https://usegalaxy.org/published/workflow?id=5004f1087f5e87db, https://usegalaxy.org/published/workflow?id=53f11afc67ffb66f, https://usegalaxy.org/published/workflow?id=59659e3a065c642c, https://usegalaxy.org/published/workflow?id=5aa2caa2dcae1477, https://usegalaxy.org/published/workflow?id=61b7ad6588f7db41, https://usegalaxy.org/published/workflow?id=61d324b1eca6300e, https://usegalaxy.org/published/workflow?id=62401f33a369bac0, https://usegalaxy.org/published/workflow?id=62ae08ab1133c22f, https://usegalaxy.org/published/workflow?id=63e0dcf18794dbc1, https://usegalaxy.org/published/workflow?id=67c2ca24bc0be58e, https://usegalaxy.org/published/workflow?id=683a0ab042fa34c9, https://usegalaxy.org/published/workflow?id=6ad3c2d8a14809ca, https://usegalaxy.org/published/workflow?id=6e6651ae846d8f83, https://usegalaxy.org/published/workflow?id=712d9ae42b45c4b9, https://usegalaxy.org/published/workflow?id=7253824f78a90431, https://usegalaxy.org/published/workflow?id=729780617ceb80db, https://usegalaxy.org/published/workflow?id=734e08331f8f34b7, https://usegalaxy.org/published/workflow?id=73d98e5f821a78b3, https://usegalaxy.org/published/workflow?id=77a1a9e7dc414650, https://usegalaxy.org/published/workflow?id=77e4bb9d6aea0c9a, https://usegalaxy.org/published/workflow?id=78db135e2aa5789d, https://usegalaxy.org/published/workflow?id=8356ee639055cbca, https://usegalaxy.org/published/workflow?id=84aa86200ff74b4a, https://usegalaxy.org/published/workflow?id=85c3a1fc1d3d3df8, https://usegalaxy.org/published/workflow?id=865d2cc4d14ec7e1, https://usegalaxy.org/published/workflow?id=8fb8c80c93ad694e, https://usegalaxy.org/published/workflow?id=96981d6acd91dc03, https://usegalaxy.org/published/workflow?id=99e754eaabd7f362, https://usegalaxy.org/published/workflow?id=9a1fb6ecff886358, https://usegalaxy.org/published/workflow?id=9b4323b68f609e06, https://usegalaxy.org/published/workflow?id=a24092b7f00b4e2a, https://usegalaxy.org/published/workflow?id=a57db139837dd24c, https://usegalaxy.org/published/workflow?id=a8ddab36010ed4c3, https://usegalaxy.org/published/workflow?id=ad6143e2f74e1e94, https://usegalaxy.org/published/workflow?id=ada910fc3a68757a, https://usegalaxy.org/published/workflow?id=b18a41e364650fee, https://usegalaxy.org/published/workflow?id=b2176abeb937f026, https://usegalaxy.org/published/workflow?id=b4bb2c7d8c7b5139, https://usegalaxy.org/published/workflow?id=b5c79535c499bc58, https://usegalaxy.org/published/workflow?id=b72edafe11293d93, https://usegalaxy.org/published/workflow?id=b7e20495b47d5b97, https://usegalaxy.org/published/workflow?id=b9e3676a84b7be5d, https://usegalaxy.org/published/workflow?id=bad9b88a6d5b6759, https://usegalaxy.org/published/workflow?id=bb9ee8e05f7042a9, https://usegalaxy.org/published/workflow?id=c3b3b2ee14bbd374, https://usegalaxy.org/published/workflow?id=c446105e87750aa2, https://usegalaxy.org/published/workflow?id=c4cde7e8d897cd25, https://usegalaxy.org/published/workflow?id=c64719e91e7346a2, https://usegalaxy.org/published/workflow?id=d3e656ab45f40c11, https://usegalaxy.org/published/workflow?id=d3eae9943ce2a62b, https://usegalaxy.org/published/workflow?id=d69ea491b99016f4, https://usegalaxy.org/published/workflow?id=d89e626fa4f9434f, https://usegalaxy.org/published/workflow?id=db8443163482a2e0, https://usegalaxy.org/published/workflow?id=dcc7c5fdef8780fd, https://usegalaxy.org/published/workflow?id=df1fa0b73f741a9c, https://usegalaxy.org/published/workflow?id=df6b9760e071b91b, https://usegalaxy.org/published/workflow?id=df6c398b2d4f1e99, https://usegalaxy.org/published/workflow?id=df7459b7e8acb872, https://usegalaxy.org/published/workflow?id=e2432c4d2b61705a, https://usegalaxy.org/published/workflow?id=e2fa6584853a0dee, https://usegalaxy.org/published/workflow?id=e6838c861b6beaed, https://usegalaxy.org/published/workflow?id=eb20150175a6ab03, https://usegalaxy.org/published/workflow?id=f2465afbdfc8ad46, https://usegalaxy.org/published/workflow?id=f39603063febba82, https://usegalaxy.org/published/workflow?id=f47f0b25c1405128, https://usegalaxy.org/published/workflow?id=f58970e6914a1bba, https://usegalaxy.org/published/workflow?id=f857e8282af234e0, https://usegalaxy.org/published/workflow?id=f895ed9fb68d3379, https://usegalaxy.org/published/workflow?id=fe2d15d352a9919f, https://usegalaxy.org/published/workflow?id=ff137b61d4ef1b86, https://workflowhub.eu/workflows/1630?version=1, https://workflowhub.eu/workflows/1635?version=1, https://workflowhub.eu/workflows/1702?version=1, https://workflowhub.eu/workflows/655?version=1 |
ecology/ENA_Biodiv_submission, ecology/Obitools-metabarcoding, sequence-analysis/Manage_AB1_Sanger |
|
fastq_manipulation |
fastq_manipulation |
Manipulate FASTQ reads on various attributes. |
2019-06-21 |
https://github.com/galaxyproject/sequence_utils |
1.1.5 |
galaxy_sequence_utils |
1.2.0 |
To update |
Fastq Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_manipulation |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/galaxy_sequence_utils/fastq_manipulation |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
201 |
274 |
2312 |
3149 |
730 |
2149 |
5368 |
14632 |
105 |
160 |
4058 |
4894 |
13 |
13 |
163 |
163 |
22838 |
11901 |
2596 |
1049 |
https://dev.workflowhub.eu/workflows/1281?version=1, https://usegalaxy.eu/published/workflow?id=7734928ebc0a2654, https://usegalaxy.org.au/published/workflow?id=5926a7669eabb1c6, https://usegalaxy.org/published/workflow?id=41b181f1d763e419, https://workflowhub.eu/workflows/1673?version=1 |
transcriptomics/srna |
|
fastq_masker_by_quality |
fastq_masker_by_quality |
FASTQ Masker by quality score |
2019-06-21 |
https://github.com/galaxyproject/sequence_utils |
1.1.5 |
galaxy_sequence_utils |
1.2.0 |
To update |
Fastq Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_masker_by_quality |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/galaxy_sequence_utils/fastq_masker_by_quality |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
51 |
53 |
232 |
263 |
263 |
990 |
2140 |
8239 |
11 |
18 |
387 |
508 |
7 |
7 |
22 |
22 |
9032 |
2781 |
1068 |
332 |
https://usegalaxy.org/published/workflow?id=958f78270fc8f55c, https://usegalaxy.org/published/workflow?id=aef91b21e3b72f70 |
sequence-analysis/Manage_AB1_Sanger |
|
fastq_paired_end_deinterlacer |
fastq_paired_end_deinterlacer |
FASTQ de-interlacer on paired end reads. |
2019-06-21 |
https://github.com/galaxyproject/sequence_utils |
1.1.5 |
galaxy_sequence_utils |
1.2.0 |
To update |
Fastq Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_paired_end_deinterlacer |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/galaxy_sequence_utils/fastq_paired_end_deinterlacer |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
532 |
695 |
6299 |
9698 |
1873 |
2507 |
14303 |
20805 |
226 |
267 |
2337 |
2864 |
52 |
52 |
498 |
498 |
33865 |
23437 |
3521 |
2683 |
https://usegalaxy.org/published/workflow?id=ae81cc0e8263d03e, https://usegalaxy.org/published/workflow?id=b1b75a9323d25085, https://usegalaxy.org/published/workflow?id=c2c6779a8b1821e0 |
|
|
fastq_paired_end_interlacer |
fastq_paired_end_interlacer |
FASTQ interlacer on paired end reads |
2019-06-21 |
https://github.com/galaxyproject/sequence_utils |
1.1.5 |
galaxy_sequence_utils |
1.2.0 |
To update |
Fastq Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_paired_end_interlacer |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/galaxy_sequence_utils/fastq_paired_end_interlacer |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
2554 |
2763 |
19286 |
21211 |
3824 |
4313 |
24257 |
27546 |
1452 |
1501 |
6500 |
6992 |
84 |
84 |
818 |
818 |
56567 |
50861 |
8661 |
7914 |
https://dev.workflowhub.eu/workflows/1003?version=1, https://dev.workflowhub.eu/workflows/1092?version=1, https://dev.workflowhub.eu/workflows/1192?version=2, https://usegalaxy.eu/published/workflow?id=01dc0619e050dc91, https://usegalaxy.eu/published/workflow?id=096b75501c8e0888, https://usegalaxy.eu/published/workflow?id=4d32b1b3ac0a7161, https://usegalaxy.eu/published/workflow?id=56edd22d14392691, https://usegalaxy.eu/published/workflow?id=5f0faac42b0a5062, https://usegalaxy.eu/published/workflow?id=6d87481be47902e1, https://usegalaxy.eu/published/workflow?id=7ab70660e6235cf0, https://usegalaxy.eu/published/workflow?id=842e0ea7b1eb56af, https://usegalaxy.eu/published/workflow?id=87cc0cd143a12c41, https://usegalaxy.eu/published/workflow?id=9472be79da012999, https://usegalaxy.eu/published/workflow?id=95cb04ffb473623b, https://usegalaxy.eu/published/workflow?id=97312d273b6e8bd9, https://usegalaxy.eu/published/workflow?id=994e5ff1df7d6c9e, https://usegalaxy.eu/published/workflow?id=a8f829deb69b30ab, https://usegalaxy.eu/published/workflow?id=b14845359b702444, https://usegalaxy.eu/published/workflow?id=b7c2440621968526, https://usegalaxy.eu/published/workflow?id=cb2df493f5e334f7, https://usegalaxy.eu/published/workflow?id=d05c6f0f3205fbd2, https://usegalaxy.eu/published/workflow?id=dfc2c53ac3103eff, https://usegalaxy.eu/published/workflow?id=e423c80058601e78, https://usegalaxy.eu/published/workflow?id=ed0ad728cf21702b, https://usegalaxy.eu/published/workflow?id=f6e8a63283262518, https://usegalaxy.eu/published/workflow?id=fdca6c9d394986bf, https://usegalaxy.fr/published/workflow?id=c4f6062e51d0f45e, https://usegalaxy.fr/published/workflow?id=e6991d64e851b09e, https://usegalaxy.org.au/published/workflow?id=30430b75d05f54eb, https://usegalaxy.org.au/published/workflow?id=408a31694e9c85e6, https://usegalaxy.org.au/published/workflow?id=533dbb3242ee4255, https://usegalaxy.org.au/published/workflow?id=7fa13ccbf044edc5, https://usegalaxy.org.au/published/workflow?id=83e3ceceb1a92493, https://usegalaxy.org.au/published/workflow?id=874492eb776ba813, https://usegalaxy.org.au/published/workflow?id=8b6739a000780d99, https://usegalaxy.org.au/published/workflow?id=9b75924c483b5f6b, https://usegalaxy.org.au/published/workflow?id=aee5b5645c51cac3, https://usegalaxy.org.au/published/workflow?id=ee7a1615f187391d, https://usegalaxy.org.au/published/workflow?id=f25a05070bf97ded, https://usegalaxy.org.au/published/workflow?id=fb0986a952c35e0a, https://usegalaxy.org/published/workflow?id=0a57740c68e85e21, https://usegalaxy.org/published/workflow?id=4e1ae78405034ad3, https://usegalaxy.org/published/workflow?id=51c485af11d90700, https://usegalaxy.org/published/workflow?id=7a33bc2d0970b502, https://usegalaxy.org/published/workflow?id=8d229c0f58a07ebe, https://usegalaxy.org/published/workflow?id=c30f6ca171896908, https://usegalaxy.org/published/workflow?id=c446105e87750aa2, https://usegalaxy.org/published/workflow?id=e745c45651d829b8, https://usegalaxy.org/published/workflow?id=f926e70bee242785, https://workflowhub.eu/workflows/1444?version=2, https://workflowhub.eu/workflows/1466?version=2, https://workflowhub.eu/workflows/1622?version=1, https://workflowhub.eu/workflows/365?version=1 |
assembly/general-introduction, microbiome/metatranscriptomics, microbiome/metatranscriptomics-short |
|
fastq_paired_end_joiner |
fastq_paired_end_joiner |
FASTQ joiner on paired end reads |
2019-06-21 |
https://github.com/galaxyproject/sequence_utils |
1.1.5 |
galaxy_sequence_utils |
1.2.0 |
To update |
Fastq Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_paired_end_joiner |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/galaxy_sequence_utils/fastq_paired_end_joiner |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
558 |
723 |
16132 |
17870 |
1864 |
5836 |
23649 |
59636 |
178 |
224 |
1758 |
2357 |
22 |
22 |
182 |
182 |
80045 |
41721 |
6805 |
2622 |
https://usegalaxy.eu/published/workflow?id=0563f58718be932d, https://usegalaxy.eu/published/workflow?id=1e5f1d9a51032e44, https://usegalaxy.eu/published/workflow?id=2cf09adb1ed6c3ec, https://usegalaxy.eu/published/workflow?id=bab0322cc0346d81, https://usegalaxy.org/published/workflow?id=5df593510c7d944d, https://usegalaxy.org/published/workflow?id=6c7d320ad951f445, https://usegalaxy.org/published/workflow?id=8d3557a82f49528c, https://usegalaxy.org/published/workflow?id=c337e5265a8079d0, https://usegalaxy.org/published/workflow?id=e4f1cce653812a22, https://usegalaxy.org/published/workflow?id=eeffba361f12a22d |
|
|
fastq_paired_end_splitter |
fastq_paired_end_splitter |
FASTQ splitter on joined paired end reads |
2019-06-21 |
https://github.com/galaxyproject/sequence_utils |
1.1.5 |
galaxy_sequence_utils |
1.2.0 |
To update |
Fastq Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_paired_end_splitter |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/galaxy_sequence_utils/fastq_paired_end_splitter |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
481 |
575 |
3999 |
4420 |
1362 |
3512 |
28121 |
40003 |
217 |
249 |
810 |
1055 |
9 |
9 |
14 |
14 |
45492 |
32944 |
4345 |
2069 |
https://usegalaxy.org/published/workflow?id=f823b87dd06ba4ac |
|
|
fastq_quality_boxplot |
cshl_fastq_quality_boxplot |
Draw quality score boxplot |
2017-07-10 |
http://hannonlab.cshl.edu/fastx_toolkit/ |
0.0.14 |
fastx_toolkit |
0.0.14 |
Up-to-date |
Fastq Manipulation, Graphics, Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastq_quality_boxplot |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/fastx_toolkit/fastq_quality_boxplot |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
131 |
188 |
1218 |
1409 |
1987 |
9047 |
12098 |
60002 |
32 |
58 |
203 |
510 |
13 |
13 |
89 |
89 |
62010 |
13608 |
9306 |
2163 |
https://usegalaxy.org/published/workflow?id=3767c9c07462b777, https://usegalaxy.org/published/workflow?id=3c32ad1a07a66843, https://usegalaxy.org/published/workflow?id=4a9b0534b1c88609, https://usegalaxy.org/published/workflow?id=6ad3c2d8a14809ca, https://usegalaxy.org/published/workflow?id=8ea5aaa1cc088077, https://usegalaxy.org/published/workflow?id=b7e20495b47d5b97, https://usegalaxy.org/published/workflow?id=c29b08d56223c274, https://usegalaxy.org/published/workflow?id=eb4b32fcf4a9f64a |
|
|
fastq_quality_converter |
cshl_fastq_quality_converter |
Quality format converter (ASCII-Numeric) |
2018-04-24 |
http://hannonlab.cshl.edu/fastx_toolkit/ |
0.0.14 |
fastx_toolkit |
0.0.14 |
Up-to-date |
Fastq Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastq_quality_converter |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/fastx_toolkit/fastq_quality_converter |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
46 |
51 |
320 |
359 |
258 |
2243 |
1370 |
9719 |
12 |
27 |
1146 |
1374 |
4 |
4 |
21 |
21 |
11473 |
2857 |
2325 |
320 |
https://usegalaxy.org/published/workflow?id=3767c9c07462b777 |
|
|
fastq_quality_filter |
cshl_fastq_quality_filter |
Filter by quality |
2017-07-10 |
http://hannonlab.cshl.edu/fastx_toolkit/ |
0.0.14 |
fastx_toolkit |
0.0.14 |
Up-to-date |
Fastq Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastq_quality_filter |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/fastx_toolkit/fastq_quality_filter |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
4153 |
4545 |
34267 |
36002 |
6088 |
13148 |
48714 |
140725 |
1878 |
2211 |
8194 |
10285 |
221 |
221 |
982 |
982 |
187994 |
92157 |
20125 |
12340 |
https://dev.workflowhub.eu/workflows/1094?version=1, https://usegalaxy.eu/published/workflow?id=01dc0619e050dc91, https://usegalaxy.eu/published/workflow?id=055eae88be2d4dd7, https://usegalaxy.eu/published/workflow?id=13da0b6780007d12, https://usegalaxy.eu/published/workflow?id=1502fd3fa90d32d8, https://usegalaxy.eu/published/workflow?id=1d0f438faa441c4e, https://usegalaxy.eu/published/workflow?id=2a274e0e4ba45c77, https://usegalaxy.eu/published/workflow?id=2aac571c44e6a7c8, https://usegalaxy.eu/published/workflow?id=38c7fa2653c5a2ee, https://usegalaxy.eu/published/workflow?id=39bf638cd7b56fd6, https://usegalaxy.eu/published/workflow?id=4c736e255f4a740f, https://usegalaxy.eu/published/workflow?id=63749bd3045ccd4a, https://usegalaxy.eu/published/workflow?id=71cac07a151f9470, https://usegalaxy.eu/published/workflow?id=76a63b1710da5e60, https://usegalaxy.eu/published/workflow?id=9a1d17c12b139bda, https://usegalaxy.eu/published/workflow?id=a8d814a6d86e9661, https://usegalaxy.eu/published/workflow?id=bd74a116e3f8d5b8, https://usegalaxy.eu/published/workflow?id=c65d98740ca64104, https://usegalaxy.eu/published/workflow?id=ccec1752fcac5e3f, https://usegalaxy.eu/published/workflow?id=d3ae8c51061330f3, https://usegalaxy.eu/published/workflow?id=d5780c37232e3181, https://usegalaxy.eu/published/workflow?id=da3a6d229e422dde, https://usegalaxy.eu/published/workflow?id=db63d53712d2571b, https://usegalaxy.eu/published/workflow?id=dbcf7af09e036754, https://usegalaxy.eu/published/workflow?id=e47351e2edd93a1a, https://usegalaxy.eu/published/workflow?id=e6c5fb1d37d29ec0, https://usegalaxy.eu/published/workflow?id=e85c9385870aadcc, https://usegalaxy.eu/published/workflow?id=f0209559f3686fcc, https://usegalaxy.eu/published/workflow?id=f81534f6cf8733e7, https://usegalaxy.org.au/published/workflow?id=0ed947e76a69028b, https://usegalaxy.org.au/published/workflow?id=5a0fc3b91ae47788, https://usegalaxy.org.au/published/workflow?id=acaca80c4a0c76c8, https://usegalaxy.org.au/published/workflow?id=b46bc04e0418fdfa, https://usegalaxy.org.au/published/workflow?id=c622bd03677314aa, https://usegalaxy.org/published/workflow?id=02d49c5f0d9aa010, https://usegalaxy.org/published/workflow?id=0555313573cd1ee2, https://usegalaxy.org/published/workflow?id=0816aa5461c390d2, https://usegalaxy.org/published/workflow?id=08edef22fa132799, https://usegalaxy.org/published/workflow?id=0d6a4dfbccafd2a2, https://usegalaxy.org/published/workflow?id=0f43fdfe1824e9d7, https://usegalaxy.org/published/workflow?id=24ada8b98b04fedc, https://usegalaxy.org/published/workflow?id=26b2057a8bc0386c, https://usegalaxy.org/published/workflow?id=3e6d4ab34de7918c, https://usegalaxy.org/published/workflow?id=3f8e0395007c8e9e, https://usegalaxy.org/published/workflow?id=58a7a02dade085cf, https://usegalaxy.org/published/workflow?id=58a91a914e381dcf, https://usegalaxy.org/published/workflow?id=58ceaed0a42fe60a, https://usegalaxy.org/published/workflow?id=63adc811e3ae529d, https://usegalaxy.org/published/workflow?id=6c49d9c25ba4ddf5, https://usegalaxy.org/published/workflow?id=7a33bc2d0970b502, https://usegalaxy.org/published/workflow?id=8356ee639055cbca, https://usegalaxy.org/published/workflow?id=947340358dd268ea, https://usegalaxy.org/published/workflow?id=9a1fb6ecff886358, https://usegalaxy.org/published/workflow?id=b6c0208e49cd2271, https://usegalaxy.org/published/workflow?id=cd3bce36b6ef073d, https://usegalaxy.org/published/workflow?id=d8afd017905d6702, https://workflowhub.eu/workflows/1481?version=1 |
introduction/galaxy-intro-short |
|
fastq_stats |
fastq_stats |
FASTQ Summary Statistics by column |
2019-06-21 |
https://github.com/galaxyproject/sequence_utils |
1.1.5 |
galaxy_sequence_utils |
1.2.0 |
To update |
Fastq Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_stats |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/galaxy_sequence_utils/fastq_stats |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
666 |
866 |
3760 |
4783 |
2843 |
14363 |
13952 |
82654 |
144 |
265 |
3781 |
4275 |
49 |
49 |
282 |
282 |
91994 |
21775 |
15543 |
3702 |
https://usegalaxy.eu/published/workflow?id=6d3ec4203b503810, https://usegalaxy.eu/published/workflow?id=e299721eec23b557, https://usegalaxy.org/published/workflow?id=0017c434354b6f6a, https://usegalaxy.org/published/workflow?id=055eb85c8ecf0ca3, https://usegalaxy.org/published/workflow?id=165c8a58baffe64c, https://usegalaxy.org/published/workflow?id=24adb067c82862fa, https://usegalaxy.org/published/workflow?id=2b3970d9b28810a1, https://usegalaxy.org/published/workflow?id=4339d5625c15ae78, https://usegalaxy.org/published/workflow?id=6f436066dffbc37d, https://usegalaxy.org/published/workflow?id=a57db139837dd24c, https://usegalaxy.org/published/workflow?id=ab23c641cfdefe0c, https://usegalaxy.org/published/workflow?id=b4dda054d2cf15b7, https://usegalaxy.org/published/workflow?id=b72edafe11293d93, https://usegalaxy.org/published/workflow?id=dcb73fce390b36b2, https://usegalaxy.org/published/workflow?id=e2fa6584853a0dee, https://usegalaxy.org/published/workflow?id=e35ac40c58953f74, https://usegalaxy.org/published/workflow?id=eb4b32fcf4a9f64a, https://usegalaxy.org/published/workflow?id=f201ce61becf9a80, https://usegalaxy.org/published/workflow?id=f3983646b6df24bf |
|
|
fastq_to_fasta |
cshl_fastq_to_fasta |
FASTQ to FASTA converter |
2017-07-10 |
http://hannonlab.cshl.edu/fastx_toolkit/ |
0.0.14 |
fastx_toolkit |
0.0.14 |
Up-to-date |
Fasta Manipulation, Convert Formats |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastq_to_fasta |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/fastx_toolkit/fastq_to_fasta |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1444 |
1549 |
42408 |
46165 |
2846 |
6719 |
45571 |
104394 |
454 |
694 |
9657 |
15445 |
168 |
168 |
2963 |
2963 |
168967 |
100599 |
9130 |
4912 |
https://usegalaxy.eu/published/workflow?id=1b43449ed8481892, https://usegalaxy.eu/published/workflow?id=58955868b504c60d, https://usegalaxy.org/published/workflow?id=9a1fb6ecff886358, https://workflowhub.eu/workflows/1723?version=1 |
ecology/eDNA-taxonomic-analysis, sequence-analysis/Manage_AB1_Sanger |
|
fastq_to_tabular |
fastq_to_tabular |
FASTQ to Tabular converter |
2019-06-21 |
https://github.com/galaxyproject/sequence_utils |
1.1.5 |
galaxy_sequence_utils |
1.2.0 |
To update |
Fastq Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_to_tabular |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/galaxy_sequence_utils/fastq_to_tabular |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
289 |
329 |
15714 |
17127 |
620 |
1864 |
13207 |
32110 |
65 |
93 |
6138 |
6473 |
24 |
24 |
2027 |
2027 |
57737 |
37086 |
2310 |
998 |
https://dev.workflowhub.eu/workflows/1287?version=2, https://dev.workflowhub.eu/workflows/1292?version=2, https://dev.workflowhub.eu/workflows/1307?version=1, https://usegalaxy.eu/published/workflow?id=4643edf74f3eaec3, https://usegalaxy.eu/published/workflow?id=5e1b048040ea7535, https://usegalaxy.eu/published/workflow?id=8c7958cb05fba814, https://usegalaxy.eu/published/workflow?id=9382f9bbbdddb5ad, https://usegalaxy.eu/published/workflow?id=acb9131e84de1ae0, https://usegalaxy.eu/published/workflow?id=bdc7cfaac0db2eab, https://usegalaxy.eu/published/workflow?id=c09159d7aad0f264, https://usegalaxy.fr/published/workflow?id=41264142d3c00016, https://usegalaxy.fr/published/workflow?id=8b1678200a1d157a, https://usegalaxy.org.au/published/workflow?id=79ca45e45d76871f, https://usegalaxy.org/published/workflow?id=14f62361a15f8a24, https://usegalaxy.org/published/workflow?id=1e1a299825f27f11, https://usegalaxy.org/published/workflow?id=24ada8b98b04fedc, https://usegalaxy.org/published/workflow?id=4266aa248d5b1ea4, https://usegalaxy.org/published/workflow?id=5004f1087f5e87db, https://usegalaxy.org/published/workflow?id=5de035c08af915ea, https://usegalaxy.org/published/workflow?id=b6c0208e49cd2271, https://usegalaxy.org/published/workflow?id=bb9ee8e05f7042a9, https://workflowhub.eu/workflows/1629?version=1, https://workflowhub.eu/workflows/1630?version=1, https://workflowhub.eu/workflows/1635?version=1 |
contributing/create-new-tutorial, sequence-analysis/Manage_AB1_Sanger, single-cell/scrna-data-ingest |
|
fastq_trimmer |
fastq_trimmer |
FASTQ Trimmer by quality |
2019-06-21 |
https://github.com/galaxyproject/sequence_utils |
1.1.5 |
galaxy_sequence_utils |
1.2.0 |
To update |
Fastq Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_trimmer |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/galaxy_sequence_utils/fastq_trimmer |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
588 |
710 |
10125 |
11833 |
1967 |
9001 |
23897 |
94089 |
110 |
218 |
1628 |
2741 |
13 |
13 |
93 |
93 |
108756 |
35743 |
9942 |
2678 |
https://usegalaxy.eu/published/workflow?id=b681f7b677b23168, https://usegalaxy.org.au/published/workflow?id=79572be1bf642251, https://usegalaxy.org.au/published/workflow?id=a3efc48b5992374e, https://usegalaxy.org.au/published/workflow?id=b518ee5540ed01fd, https://usegalaxy.org.au/published/workflow?id=d0933b5040adf902, https://usegalaxy.org.au/published/workflow?id=d1b604a5441dc4b0, https://usegalaxy.org/published/workflow?id=14410527253c6f40, https://usegalaxy.org/published/workflow?id=1b385fd45ee48614, https://usegalaxy.org/published/workflow?id=462261c5e22635f0, https://usegalaxy.org/published/workflow?id=48dd684196c65735, https://usegalaxy.org/published/workflow?id=61d324b1eca6300e, https://usegalaxy.org/published/workflow?id=81183f40d2f3e395, https://usegalaxy.org/published/workflow?id=8356ee639055cbca, https://usegalaxy.org/published/workflow?id=9a1fb6ecff886358, https://usegalaxy.org/published/workflow?id=ada910fc3a68757a, https://usegalaxy.org/published/workflow?id=eb20150175a6ab03, https://usegalaxy.org/published/workflow?id=fcce98489c8ca7a3 |
|
|
fastqc |
fastqc |
Read QC reports using FastQC |
2017-01-11 |
http://www.bioinformatics.babraham.ac.uk/projects/fastqc/ |
0.74+galaxy1 |
fastqc |
0.12.1 |
To update |
Fastq Manipulation |
Sequence composition calculation, Sequencing quality control, Statistical calculation |
Sequence composition calculation, Sequencing quality control, Statistical calculation |
Sequencing, Data quality management, Sequence analysis |
Sequencing, Data quality management, Sequence analysis |
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastqc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastqc |
fastqc |
FastQC |
This tool aims to provide a QC report which can spot problems or biases which originate either in the sequencer or in the starting library material. It can be run in one of two modes. It can either run as a stand alone interactive application for the immediate analysis of small numbers of FastQ files, or it can be run in a non-interactive mode where it would be suitable for integrating into a larger analysis pipeline for the systematic processing of large numbers of files. |
|
1 |
1 |
1 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
1 |
1 |
1 |
1 |
1 |
0 |
46102 |
50230 |
2012104 |
2194122 |
96800 |
151105 |
2501919 |
3538470 |
14744 |
17281 |
443065 |
494524 |
3842 |
3843 |
144752 |
145075 |
6372191 |
5101840 |
222459 |
161488 |
https://dev.workflowhub.eu/workflows/1000?version=1, https://dev.workflowhub.eu/workflows/1001?version=1, https://dev.workflowhub.eu/workflows/1003?version=1, https://dev.workflowhub.eu/workflows/1012?version=1, https://dev.workflowhub.eu/workflows/1064?version=1, https://dev.workflowhub.eu/workflows/1081?version=1, https://dev.workflowhub.eu/workflows/1087?version=2, https://dev.workflowhub.eu/workflows/1092?version=1, https://dev.workflowhub.eu/workflows/1094?version=1, https://dev.workflowhub.eu/workflows/1097?version=1, https://dev.workflowhub.eu/workflows/1099?version=1, https://dev.workflowhub.eu/workflows/1100?version=2, https://dev.workflowhub.eu/workflows/1114?version=1, https://dev.workflowhub.eu/workflows/1116?version=1, https://dev.workflowhub.eu/workflows/1118?version=1, https://dev.workflowhub.eu/workflows/1135?version=2, https://dev.workflowhub.eu/workflows/1152?version=2, https://dev.workflowhub.eu/workflows/1153?version=2, https://dev.workflowhub.eu/workflows/1157?version=2, https://dev.workflowhub.eu/workflows/1161?version=2, https://dev.workflowhub.eu/workflows/1162?version=2, https://dev.workflowhub.eu/workflows/1169?version=2, https://dev.workflowhub.eu/workflows/1175?version=2, https://dev.workflowhub.eu/workflows/1178?version=1, https://dev.workflowhub.eu/workflows/1179?version=2, https://dev.workflowhub.eu/workflows/1182?version=2, https://dev.workflowhub.eu/workflows/1192?version=2, https://dev.workflowhub.eu/workflows/1208?version=1, https://dev.workflowhub.eu/workflows/1250?version=2, https://dev.workflowhub.eu/workflows/1265?version=1, https://dev.workflowhub.eu/workflows/1269?version=1, https://dev.workflowhub.eu/workflows/1274?version=2, https://dev.workflowhub.eu/workflows/1281?version=1, https://dev.workflowhub.eu/workflows/1282?version=2, https://dev.workflowhub.eu/workflows/1285?version=2, https://dev.workflowhub.eu/workflows/1286?version=2, https://dev.workflowhub.eu/workflows/1291?version=2, https://dev.workflowhub.eu/workflows/1295?version=1, https://dev.workflowhub.eu/workflows/1306?version=2, https://dev.workflowhub.eu/workflows/1318?version=2, https://dev.workflowhub.eu/workflows/1319?version=2, https://dev.workflowhub.eu/workflows/1324?version=3, https://dev.workflowhub.eu/workflows/1327?version=1, https://dev.workflowhub.eu/workflows/132?version=1, https://dev.workflowhub.eu/workflows/1344?version=1, https://dev.workflowhub.eu/workflows/1397?version=1, https://dev.workflowhub.eu/workflows/38?version=1, https://usegalaxy.eu/published/workflow?id=01dc0619e050dc91, https://usegalaxy.eu/published/workflow?id=02631612a43a4d9b, https://usegalaxy.eu/published/workflow?id=02655d0e4af0ee0d, https://usegalaxy.eu/published/workflow?id=055eae88be2d4dd7, https://usegalaxy.eu/published/workflow?id=0590554db9794d13, https://usegalaxy.eu/published/workflow?id=0609a4b1941d1a68, https://usegalaxy.eu/published/workflow?id=06fe33c4420906bf, https://usegalaxy.eu/published/workflow?id=08eb5e55109c4d9c, https://usegalaxy.eu/published/workflow?id=096b75501c8e0888, https://usegalaxy.eu/published/workflow?id=0c619b25c1394a09, https://usegalaxy.eu/published/workflow?id=0d41c30f6952f790, https://usegalaxy.eu/published/workflow?id=0de150b19102cb7e, https://usegalaxy.eu/published/workflow?id=0ec684b341ad172d, https://usegalaxy.eu/published/workflow?id=0fa523529c4f73cf, https://usegalaxy.eu/published/workflow?id=11290f22e13899bd, https://usegalaxy.eu/published/workflow?id=135e8888872e8413, https://usegalaxy.eu/published/workflow?id=13da0b6780007d12, https://usegalaxy.eu/published/workflow?id=1502fd3fa90d32d8, https://usegalaxy.eu/published/workflow?id=1524b189069b42a5, https://usegalaxy.eu/published/workflow?id=153ba1581743d31f, https://usegalaxy.eu/published/workflow?id=1590085d315aa80e, https://usegalaxy.eu/published/workflow?id=165089132248a0b0, https://usegalaxy.eu/published/workflow?id=181e751be8dd9abc, https://usegalaxy.eu/published/workflow?id=1842a61fe5f6965f, https://usegalaxy.eu/published/workflow?id=1860e02bcb894a64, https://usegalaxy.eu/published/workflow?id=18c9095fbf5c4517, https://usegalaxy.eu/published/workflow?id=1aa1344d6145ade3, https://usegalaxy.eu/published/workflow?id=1b49eda539658e53, https://usegalaxy.eu/published/workflow?id=1bc7b5eabea972fd, https://usegalaxy.eu/published/workflow?id=1be0c4adf13cf368, https://usegalaxy.eu/published/workflow?id=1c3e7b3af6ff79fa, https://usegalaxy.eu/published/workflow?id=1ccc0c9e1c6821bb, https://usegalaxy.eu/published/workflow?id=1d0f438faa441c4e, https://usegalaxy.eu/published/workflow?id=1d1092f57e418c57, https://usegalaxy.eu/published/workflow?id=1d1ebdeddf23bdb9, https://usegalaxy.eu/published/workflow?id=1d2e17a4f71f2455, https://usegalaxy.eu/published/workflow?id=1ee43d90b69829e9, https://usegalaxy.eu/published/workflow?id=1ef76b7b86e15792, https://usegalaxy.eu/published/workflow?id=1f9a9a7998ef5ab3, https://usegalaxy.eu/published/workflow?id=1fe02012c96b731f, https://usegalaxy.eu/published/workflow?id=20ada53472782c9b, https://usegalaxy.eu/published/workflow?id=212c213f1d8e0154, https://usegalaxy.eu/published/workflow?id=21c8ee4af52a3931, https://usegalaxy.eu/published/workflow?id=21dd4bd16579fc12, https://usegalaxy.eu/published/workflow?id=220961d803697f54, https://usegalaxy.eu/published/workflow?id=22454322d370b3ff, https://usegalaxy.eu/published/workflow?id=23821870734575e9, https://usegalaxy.eu/published/workflow?id=24ddd188da35b061, https://usegalaxy.eu/published/workflow?id=250e6058f160825f, https://usegalaxy.eu/published/workflow?id=25a209bda998412f, https://usegalaxy.eu/published/workflow?id=26185e8fa5a9b988, https://usegalaxy.eu/published/workflow?id=26c4882e320ed7b3, https://usegalaxy.eu/published/workflow?id=291c36e1b18e9deb, https://usegalaxy.eu/published/workflow?id=29a855d928337f8f, https://usegalaxy.eu/published/workflow?id=2a13eb981d6ee36e, https://usegalaxy.eu/published/workflow?id=2a274e0e4ba45c77, https://usegalaxy.eu/published/workflow?id=2a73d658446747de, https://usegalaxy.eu/published/workflow?id=2aac571c44e6a7c8, https://usegalaxy.eu/published/workflow?id=2aede5c6577b28f5, https://usegalaxy.eu/published/workflow?id=2c3d05023c02113e, https://usegalaxy.eu/published/workflow?id=2cf09adb1ed6c3ec, https://usegalaxy.eu/published/workflow?id=2d2d0c2231babc50, https://usegalaxy.eu/published/workflow?id=2d64d6571e01809d, https://usegalaxy.eu/published/workflow?id=2e0075791f7fa384, https://usegalaxy.eu/published/workflow?id=2f37c35ade97aa8d, https://usegalaxy.eu/published/workflow?id=2fd462d85412444c, https://usegalaxy.eu/published/workflow?id=300301c23327f797, https://usegalaxy.eu/published/workflow?id=3183c2abca463bb4, https://usegalaxy.eu/published/workflow?id=318be2b30bf7884c, https://usegalaxy.eu/published/workflow?id=31d9eb6a120411d6, https://usegalaxy.eu/published/workflow?id=340aa3ae5468deb0, https://usegalaxy.eu/published/workflow?id=344cd3a3c2ce5302, https://usegalaxy.eu/published/workflow?id=350d7e6976e15d30, https://usegalaxy.eu/published/workflow?id=36a4646959829018, https://usegalaxy.eu/published/workflow?id=374797e58377c40f, https://usegalaxy.eu/published/workflow?id=3828466d773e508c, https://usegalaxy.eu/published/workflow?id=385cc7df70d7916b, https://usegalaxy.eu/published/workflow?id=38c7fa2653c5a2ee, https://usegalaxy.eu/published/workflow?id=39876e9c04aad543, https://usegalaxy.eu/published/workflow?id=39bf638cd7b56fd6, https://usegalaxy.eu/published/workflow?id=3b7c0b64033f38ac, https://usegalaxy.eu/published/workflow?id=3d5b39e454df584b, https://usegalaxy.eu/published/workflow?id=3ff4dbcc7a602e6b, https://usegalaxy.eu/published/workflow?id=401746888e8b3aa8, https://usegalaxy.eu/published/workflow?id=40a621934a07c7ee, https://usegalaxy.eu/published/workflow?id=42c0da2e86318b37, https://usegalaxy.eu/published/workflow?id=4412f7223a557b48, https://usegalaxy.eu/published/workflow?id=443ea80b36d862f5, https://usegalaxy.eu/published/workflow?id=466bdd8ba7b67264, https://usegalaxy.eu/published/workflow?id=47a0407867a90f95, https://usegalaxy.eu/published/workflow?id=48071c1720b2fd8d, https://usegalaxy.eu/published/workflow?id=487929c7b5be8dc3, https://usegalaxy.eu/published/workflow?id=489926f9299594fe, https://usegalaxy.eu/published/workflow?id=48fe9c4de045d414, https://usegalaxy.eu/published/workflow?id=49ce9e738fadef4a, https://usegalaxy.eu/published/workflow?id=4c736e255f4a740f, https://usegalaxy.eu/published/workflow?id=4d32b1b3ac0a7161, https://usegalaxy.eu/published/workflow?id=4dd7f6e1c1e7f96a, https://usegalaxy.eu/published/workflow?id=4e215c9b50650d5d, https://usegalaxy.eu/published/workflow?id=4f245ac304ab76d9, https://usegalaxy.eu/published/workflow?id=4f62794453f65cba, https://usegalaxy.eu/published/workflow?id=50758631a0e81a7a, https://usegalaxy.eu/published/workflow?id=510bcef37f385495, https://usegalaxy.eu/published/workflow?id=519e0ffdfd1790bc, https://usegalaxy.eu/published/workflow?id=52cafb62f5bf6e25, https://usegalaxy.eu/published/workflow?id=533819bcb5aa78c5, https://usegalaxy.eu/published/workflow?id=534b81d48df6b507, https://usegalaxy.eu/published/workflow?id=535f777e5e42e98c, https://usegalaxy.eu/published/workflow?id=5436eb1c430a38dd, https://usegalaxy.eu/published/workflow?id=54467870b7c635f2, https://usegalaxy.eu/published/workflow?id=54a4f76a5d736011, https://usegalaxy.eu/published/workflow?id=56868483be18f1a1, https://usegalaxy.eu/published/workflow?id=56edd22d14392691, https://usegalaxy.eu/published/workflow?id=579ff83177c5ee09, https://usegalaxy.eu/published/workflow?id=57d3109f32defa3b, https://usegalaxy.eu/published/workflow?id=591ebf913450f49e, https://usegalaxy.eu/published/workflow?id=59b274da8df01ead, https://usegalaxy.eu/published/workflow?id=5a16af00bf8bf57b, https://usegalaxy.eu/published/workflow?id=5aba0f20d994b1a4, https://usegalaxy.eu/published/workflow?id=5b00ef046439d757, https://usegalaxy.eu/published/workflow?id=5e3c352233aa7a52, https://usegalaxy.eu/published/workflow?id=5ec0d6d108e02e1a, https://usegalaxy.eu/published/workflow?id=5ed38d8114bcd6f7, https://usegalaxy.eu/published/workflow?id=5f0faac42b0a5062, https://usegalaxy.eu/published/workflow?id=60a45de522b8b695, https://usegalaxy.eu/published/workflow?id=60e4d0db3164f037, https://usegalaxy.eu/published/workflow?id=60f2a8721e203057, https://usegalaxy.eu/published/workflow?id=6158c3b5fc12044e, https://usegalaxy.eu/published/workflow?id=61e592bafd9d2b58, https://usegalaxy.eu/published/workflow?id=625aafb9cf16b03f, https://usegalaxy.eu/published/workflow?id=63749bd3045ccd4a, https://usegalaxy.eu/published/workflow?id=63964ba7d9edce74, https://usegalaxy.eu/published/workflow?id=6514e610c79df72c, https://usegalaxy.eu/published/workflow?id=65aed668233d5f73, https://usegalaxy.eu/published/workflow?id=667bac8d7453e5f1, https://usegalaxy.eu/published/workflow?id=66834f10c86362b9, https://usegalaxy.eu/published/workflow?id=67e20e3082d24fbd, https://usegalaxy.eu/published/workflow?id=68e8042f11d5a3fd, https://usegalaxy.eu/published/workflow?id=6a5c39c1d38a10c2, https://usegalaxy.eu/published/workflow?id=6bce1d419a179c50, https://usegalaxy.eu/published/workflow?id=6dbc84168feea337, https://usegalaxy.eu/published/workflow?id=6deb9781d9f45a52, https://usegalaxy.eu/published/workflow?id=6ed1016dfdf9f928, https://usegalaxy.eu/published/workflow?id=6fc2b9bea5b75a49, https://usegalaxy.eu/published/workflow?id=70b1c40b818cc320, https://usegalaxy.eu/published/workflow?id=7117dbcbd5d12de5, https://usegalaxy.eu/published/workflow?id=7136ce9f18c74853, https://usegalaxy.eu/published/workflow?id=71a9224fa6f3da9d, https://usegalaxy.eu/published/workflow?id=71cac07a151f9470, https://usegalaxy.eu/published/workflow?id=72e3e5fdc766e24a, https://usegalaxy.eu/published/workflow?id=733650962d379da2, https://usegalaxy.eu/published/workflow?id=75e88603745e069e, https://usegalaxy.eu/published/workflow?id=762c64a9f588a420, https://usegalaxy.eu/published/workflow?id=766ebba7a2aee494, https://usegalaxy.eu/published/workflow?id=76a63b1710da5e60, https://usegalaxy.eu/published/workflow?id=76e9cd837ea5e7da, https://usegalaxy.eu/published/workflow?id=7734928ebc0a2654, https://usegalaxy.eu/published/workflow?id=7aa32aba3fde0708, https://usegalaxy.eu/published/workflow?id=7baae0775071c7ec, https://usegalaxy.eu/published/workflow?id=7c9b182da21748c7, https://usegalaxy.eu/published/workflow?id=7cc253b53379b727, https://usegalaxy.eu/published/workflow?id=82ef590b5821805d, https://usegalaxy.eu/published/workflow?id=83049910e2cd5128, https://usegalaxy.eu/published/workflow?id=842e0ea7b1eb56af, https://usegalaxy.eu/published/workflow?id=8601a62dbca3082f, https://usegalaxy.eu/published/workflow?id=865f470be3c18b08, https://usegalaxy.eu/published/workflow?id=87231a6a7938cb95, https://usegalaxy.eu/published/workflow?id=872f5bc9fdbbc619, https://usegalaxy.eu/published/workflow?id=87cc0cd143a12c41, https://usegalaxy.eu/published/workflow?id=88064e2231165fd2, https://usegalaxy.eu/published/workflow?id=889f2782ad82bd69, https://usegalaxy.eu/published/workflow?id=88b382a6f56a6329, https://usegalaxy.eu/published/workflow?id=8ab6a554cdea5195, https://usegalaxy.eu/published/workflow?id=8b1e2fe9f4a07de0, https://usegalaxy.eu/published/workflow?id=8b2f53745e720d0f, https://usegalaxy.eu/published/workflow?id=8bc1c3b9e665ea37, https://usegalaxy.eu/published/workflow?id=8deb08d4f228e198, https://usegalaxy.eu/published/workflow?id=8edf456f4aeddaac, https://usegalaxy.eu/published/workflow?id=8f3ce55d44d9f369, https://usegalaxy.eu/published/workflow?id=8f415b0c409f56f7, https://usegalaxy.eu/published/workflow?id=8fb156020285e049, https://usegalaxy.eu/published/workflow?id=910570a2caafe462, https://usegalaxy.eu/published/workflow?id=9141c6449595c6a1, https://usegalaxy.eu/published/workflow?id=91d4aabba7ad40c8, https://usegalaxy.eu/published/workflow?id=9219557de92e0203, https://usegalaxy.eu/published/workflow?id=927d24dcde139b9c, https://usegalaxy.eu/published/workflow?id=9382f9bbbdddb5ad, https://usegalaxy.eu/published/workflow?id=9472be79da012999, https://usegalaxy.eu/published/workflow?id=94bbf8fa7c1f030d, https://usegalaxy.eu/published/workflow?id=95cb04ffb473623b, https://usegalaxy.eu/published/workflow?id=985044b4b2c51425, https://usegalaxy.eu/published/workflow?id=98d4adf5774e274e, https://usegalaxy.eu/published/workflow?id=99022559adf01c4a, https://usegalaxy.eu/published/workflow?id=99799eec4497f977, https://usegalaxy.eu/published/workflow?id=9a1d17c12b139bda, https://usegalaxy.eu/published/workflow?id=9b025479fade745d, https://usegalaxy.eu/published/workflow?id=9b9e1e28f3683f92, https://usegalaxy.eu/published/workflow?id=9c7a218993788493, https://usegalaxy.eu/published/workflow?id=9cbba5de2cbeeb0f, https://usegalaxy.eu/published/workflow?id=9e01e24c5e749365, https://usegalaxy.eu/published/workflow?id=9e03cf8cd5e5de08, https://usegalaxy.eu/published/workflow?id=9e31c51911987687, https://usegalaxy.eu/published/workflow?id=9fddc44294236e8f, https://usegalaxy.eu/published/workflow?id=a08279c2a305afff, https://usegalaxy.eu/published/workflow?id=a28c207730e7e13d, https://usegalaxy.eu/published/workflow?id=a35e0c2fcba4e95f, https://usegalaxy.eu/published/workflow?id=a62f21701ff37788, https://usegalaxy.eu/published/workflow?id=a6c666f3028ea440, https://usegalaxy.eu/published/workflow?id=a705370bc2c13d5c, https://usegalaxy.eu/published/workflow?id=a72d2667a53830f7, https://usegalaxy.eu/published/workflow?id=a8417c63e9e22afb, https://usegalaxy.eu/published/workflow?id=a847773b563b2328, https://usegalaxy.eu/published/workflow?id=a8d814a6d86e9661, https://usegalaxy.eu/published/workflow?id=a8f829deb69b30ab, https://usegalaxy.eu/published/workflow?id=ab6e6ffaaebab45b, https://usegalaxy.eu/published/workflow?id=ab8924d78fa5ef8f, https://usegalaxy.eu/published/workflow?id=ad4b347f9b68e127, https://usegalaxy.eu/published/workflow?id=ae1ca223d6667070, https://usegalaxy.eu/published/workflow?id=af30010868c97316, https://usegalaxy.eu/published/workflow?id=afad9a17a80bb26d, https://usegalaxy.eu/published/workflow?id=b1d1694b95ed10e1, https://usegalaxy.eu/published/workflow?id=b26fee38f6f796d8, https://usegalaxy.eu/published/workflow?id=b2b46e71046b1999, https://usegalaxy.eu/published/workflow?id=b30c294a094c90bc, https://usegalaxy.eu/published/workflow?id=b37800d990cceb83, https://usegalaxy.eu/published/workflow?id=b3b094f1bdbaa04a, https://usegalaxy.eu/published/workflow?id=b41ff6d8fb5a0878, https://usegalaxy.eu/published/workflow?id=b619339f4e1c6fdf, https://usegalaxy.eu/published/workflow?id=b6eb5fe7e37f680a, https://usegalaxy.eu/published/workflow?id=b7a3cbcd32734e8b, https://usegalaxy.eu/published/workflow?id=b7c2440621968526, https://usegalaxy.eu/published/workflow?id=b801e745205892f5, https://usegalaxy.eu/published/workflow?id=b82a4065be048ef6, https://usegalaxy.eu/published/workflow?id=b86f3775aa1f13bc, https://usegalaxy.eu/published/workflow?id=bb604ff5e010e7ab, https://usegalaxy.eu/published/workflow?id=bbe2a1615c8faaae, https://usegalaxy.eu/published/workflow?id=bc79a9f797334b01, https://usegalaxy.eu/published/workflow?id=bcb8a8c5bff790ab, https://usegalaxy.eu/published/workflow?id=bd74a116e3f8d5b8, https://usegalaxy.eu/published/workflow?id=bebcbd6f0ffa55c5, https://usegalaxy.eu/published/workflow?id=bfb762c96328e3c1, https://usegalaxy.eu/published/workflow?id=bffeb3cd0c708441, https://usegalaxy.eu/published/workflow?id=c3aa516e78ca4191, https://usegalaxy.eu/published/workflow?id=c46345ba876d5bfe, https://usegalaxy.eu/published/workflow?id=c5e6047b3b256b06, https://usegalaxy.eu/published/workflow?id=c65d98740ca64104, https://usegalaxy.eu/published/workflow?id=c7e1aee909c9b483, https://usegalaxy.eu/published/workflow?id=c7f34c67c9054234, https://usegalaxy.eu/published/workflow?id=c885eaabae612d6d, https://usegalaxy.eu/published/workflow?id=c992e77a6e8edcbd, https://usegalaxy.eu/published/workflow?id=ca9d3233b0912765, https://usegalaxy.eu/published/workflow?id=cae527ce845e770e, https://usegalaxy.eu/published/workflow?id=cbc16cb5db98ab21, https://usegalaxy.eu/published/workflow?id=cc37667c2d1f9056, https://usegalaxy.eu/published/workflow?id=ccec1752fcac5e3f, https://usegalaxy.eu/published/workflow?id=ccef778cfd9024d1, https://usegalaxy.eu/published/workflow?id=ce5c16ac23c4fbb1, https://usegalaxy.eu/published/workflow?id=cf9dc7ad34c81fa2, https://usegalaxy.eu/published/workflow?id=d05c6f0f3205fbd2, https://usegalaxy.eu/published/workflow?id=d086340422009ba9, https://usegalaxy.eu/published/workflow?id=d1338e2b4002a364, https://usegalaxy.eu/published/workflow?id=d2f75f70c33394ee, https://usegalaxy.eu/published/workflow?id=d3ae8c51061330f3, https://usegalaxy.eu/published/workflow?id=d3dfe7ba11508c72, https://usegalaxy.eu/published/workflow?id=d41b52a15ba56f54, https://usegalaxy.eu/published/workflow?id=d4603d244cf8ac5b, https://usegalaxy.eu/published/workflow?id=d503dee6f9b35a18, https://usegalaxy.eu/published/workflow?id=d5333903ba947adf, https://usegalaxy.eu/published/workflow?id=d5780c37232e3181, https://usegalaxy.eu/published/workflow?id=d57d41e306241396, https://usegalaxy.eu/published/workflow?id=d6ff6be33b8bfe85, https://usegalaxy.eu/published/workflow?id=d7aa4c258e2edc95, https://usegalaxy.eu/published/workflow?id=d9f8c5d575da02b1, https://usegalaxy.eu/published/workflow?id=da19c0eaa757fa39, https://usegalaxy.eu/published/workflow?id=da3a6d229e422dde, https://usegalaxy.eu/published/workflow?id=da5d4e3e6c66cf3b, https://usegalaxy.eu/published/workflow?id=daf47855afa73de8, https://usegalaxy.eu/published/workflow?id=db10c092fad70d69, https://usegalaxy.eu/published/workflow?id=db63d53712d2571b, https://usegalaxy.eu/published/workflow?id=dbcf7af09e036754, https://usegalaxy.eu/published/workflow?id=dd3193aaaf08e798, https://usegalaxy.eu/published/workflow?id=dd8b55e7768843b1, https://usegalaxy.eu/published/workflow?id=de3eafbcf42c75bb, https://usegalaxy.eu/published/workflow?id=df3bf1700d3faefc, https://usegalaxy.eu/published/workflow?id=dfc2c53ac3103eff, https://usegalaxy.eu/published/workflow?id=e47351e2edd93a1a, https://usegalaxy.eu/published/workflow?id=e5f6d12e08d7a13b, https://usegalaxy.eu/published/workflow?id=e62b659a5da9734e, https://usegalaxy.eu/published/workflow?id=e6c5ae57528918d2, https://usegalaxy.eu/published/workflow?id=e6c5fb1d37d29ec0, https://usegalaxy.eu/published/workflow?id=e85c9385870aadcc, https://usegalaxy.eu/published/workflow?id=e8eb80ee09159bac, https://usegalaxy.eu/published/workflow?id=e94e307375a92c94, https://usegalaxy.eu/published/workflow?id=ea0524e0b5eab8b9, https://usegalaxy.eu/published/workflow?id=eb3cfa4d1f05fc0e, https://usegalaxy.eu/published/workflow?id=eb5ab8bc82569eee, https://usegalaxy.eu/published/workflow?id=eb8168bc01249596, https://usegalaxy.eu/published/workflow?id=ecab5b2c3ff3df9d, https://usegalaxy.eu/published/workflow?id=ecf48fa50af560a0, https://usegalaxy.eu/published/workflow?id=edf7e2128f5aef8d, https://usegalaxy.eu/published/workflow?id=ee0005a5487653ba, https://usegalaxy.eu/published/workflow?id=f0209559f3686fcc, https://usegalaxy.eu/published/workflow?id=f026c4b8341ff94c, https://usegalaxy.eu/published/workflow?id=f0ac222d3e965ab0, https://usegalaxy.eu/published/workflow?id=f12fb4a95954c448, https://usegalaxy.eu/published/workflow?id=f28459c5b16549b7, https://usegalaxy.eu/published/workflow?id=f33b5135ee99e0dc, https://usegalaxy.eu/published/workflow?id=f39528391f22aab0, https://usegalaxy.eu/published/workflow?id=f560e06d23818b4c, https://usegalaxy.eu/published/workflow?id=f5be5bcf9b9f171c, https://usegalaxy.eu/published/workflow?id=f6e8a63283262518, https://usegalaxy.eu/published/workflow?id=f81534f6cf8733e7, https://usegalaxy.eu/published/workflow?id=f97e6fe1fcbc53a7, https://usegalaxy.eu/published/workflow?id=fb18c5d14acb1b36, https://usegalaxy.eu/published/workflow?id=fba10ba449498bb5, https://usegalaxy.eu/published/workflow?id=fd90652d475ed739, https://usegalaxy.eu/published/workflow?id=fdca6c9d394986bf, https://usegalaxy.eu/published/workflow?id=fe43cf59e48bf556, https://usegalaxy.eu/published/workflow?id=fe64d430d50faf0b, https://usegalaxy.eu/published/workflow?id=fe8a1a970fd0d4cd, https://usegalaxy.eu/published/workflow?id=ff2fd4a4bb27d859, https://usegalaxy.fr/published/workflow?id=0f6714dbdb90b6aa, https://usegalaxy.fr/published/workflow?id=10073c7392914246, https://usegalaxy.fr/published/workflow?id=334189184455d9a2, https://usegalaxy.fr/published/workflow?id=5d83e0886f2a7465, https://usegalaxy.fr/published/workflow?id=5e49933a687c2b46, https://usegalaxy.fr/published/workflow?id=6d2945d35fa956c8, https://usegalaxy.fr/published/workflow?id=72b531d980acaa6c, https://usegalaxy.fr/published/workflow?id=74b4d11c07f7f0a4, https://usegalaxy.fr/published/workflow?id=776ef2fa51094ba6, https://usegalaxy.fr/published/workflow?id=826cffb2458e4067, https://usegalaxy.fr/published/workflow?id=aa96487c5a1b29bf, https://usegalaxy.fr/published/workflow?id=c4f6062e51d0f45e, https://usegalaxy.fr/published/workflow?id=e0bad0b97ee71577, https://usegalaxy.fr/published/workflow?id=e6991d64e851b09e, https://usegalaxy.org.au/published/workflow?id=000cdc969e9f0886, https://usegalaxy.org.au/published/workflow?id=01997cb92a2ce2d5, https://usegalaxy.org.au/published/workflow?id=0220e60c66de9065, https://usegalaxy.org.au/published/workflow?id=02b8d033d9b1fa05, https://usegalaxy.org.au/published/workflow?id=03b090e75c61c1c3, https://usegalaxy.org.au/published/workflow?id=0427bd5f28789a1f, https://usegalaxy.org.au/published/workflow?id=046a1c600a6b77c2, https://usegalaxy.org.au/published/workflow?id=05950987aa2eba5b, https://usegalaxy.org.au/published/workflow?id=05b17b9d70c1db8b, https://usegalaxy.org.au/published/workflow?id=0614f24ebeb680de, https://usegalaxy.org.au/published/workflow?id=068f85b8b137bfd7, https://usegalaxy.org.au/published/workflow?id=07c97b9e59c0218f, https://usegalaxy.org.au/published/workflow?id=0a477899db53d098, https://usegalaxy.org.au/published/workflow?id=0c567180448d8774, https://usegalaxy.org.au/published/workflow?id=0cfc1408fd9ea4e7, https://usegalaxy.org.au/published/workflow?id=0d1db28665d19bda, https://usegalaxy.org.au/published/workflow?id=0ed947e76a69028b, https://usegalaxy.org.au/published/workflow?id=0f48060aa1bd41a5, https://usegalaxy.org.au/published/workflow?id=0fc7c14c4d1ac8f5, https://usegalaxy.org.au/published/workflow?id=10acf4f497172400, https://usegalaxy.org.au/published/workflow?id=114fb9589bb9db92, https://usegalaxy.org.au/published/workflow?id=115151c2c8998d44, https://usegalaxy.org.au/published/workflow?id=115896e8f4059e44, https://usegalaxy.org.au/published/workflow?id=126116a92f2e9a68, https://usegalaxy.org.au/published/workflow?id=13ce18408ee7acc9, https://usegalaxy.org.au/published/workflow?id=14184bc2580a131f, https://usegalaxy.org.au/published/workflow?id=14e80b7f9f68ec2a, https://usegalaxy.org.au/published/workflow?id=158b5d9107a05d95, https://usegalaxy.org.au/published/workflow?id=1624a678c6791ca6, https://usegalaxy.org.au/published/workflow?id=16f4846b4d6bc155, https://usegalaxy.org.au/published/workflow?id=178db14511c8f293, https://usegalaxy.org.au/published/workflow?id=189c584ea4bde59a, https://usegalaxy.org.au/published/workflow?id=19315e6573c58239, https://usegalaxy.org.au/published/workflow?id=1a107e6611fb9c15, https://usegalaxy.org.au/published/workflow?id=1ab66d382630afa7, https://usegalaxy.org.au/published/workflow?id=1ac197bae296b2bf, https://usegalaxy.org.au/published/workflow?id=1ad81f95ace878ea, https://usegalaxy.org.au/published/workflow?id=1c886f008a36b0b8, https://usegalaxy.org.au/published/workflow?id=1f63ec596e578b1c, https://usegalaxy.org.au/published/workflow?id=20e5e6b233ffb951, https://usegalaxy.org.au/published/workflow?id=210ca013cc1cf185, https://usegalaxy.org.au/published/workflow?id=2362ff8880213586, https://usegalaxy.org.au/published/workflow?id=24f0d1f7a28756b5, https://usegalaxy.org.au/published/workflow?id=25ac9b4f2e39af97, https://usegalaxy.org.au/published/workflow?id=25d52afddaa3451b, https://usegalaxy.org.au/published/workflow?id=25f65a29ce3c3ee0, https://usegalaxy.org.au/published/workflow?id=2999a1891ffe201b, https://usegalaxy.org.au/published/workflow?id=2a0046582f5f15a1, https://usegalaxy.org.au/published/workflow?id=2a97585556d53a43, https://usegalaxy.org.au/published/workflow?id=2afeae1ec03c0b57, https://usegalaxy.org.au/published/workflow?id=2b0a986519532412, https://usegalaxy.org.au/published/workflow?id=2c58509f80897972, https://usegalaxy.org.au/published/workflow?id=2cef9a1633e0a067, https://usegalaxy.org.au/published/workflow?id=2f7c0e3221cbca2f, https://usegalaxy.org.au/published/workflow?id=301fdb29c513ffbe, https://usegalaxy.org.au/published/workflow?id=30430b75d05f54eb, https://usegalaxy.org.au/published/workflow?id=30b2cd025e0300da, https://usegalaxy.org.au/published/workflow?id=31449596b22f81f4, https://usegalaxy.org.au/published/workflow?id=31dbe7344d72b903, https://usegalaxy.org.au/published/workflow?id=35384818ee1cbac2, https://usegalaxy.org.au/published/workflow?id=368f8ac35f4be589, https://usegalaxy.org.au/published/workflow?id=374311292d72c9f9, https://usegalaxy.org.au/published/workflow?id=383ce49fa7a367e9, https://usegalaxy.org.au/published/workflow?id=38f57cffaeb0e39f, https://usegalaxy.org.au/published/workflow?id=39bb22274ede7500, https://usegalaxy.org.au/published/workflow?id=39c724282ee008e3, https://usegalaxy.org.au/published/workflow?id=39d56981a6854d82, https://usegalaxy.org.au/published/workflow?id=3ac73a2f00423326, https://usegalaxy.org.au/published/workflow?id=3bc45aaed5da1058, https://usegalaxy.org.au/published/workflow?id=3c1b1f210c7c292b, https://usegalaxy.org.au/published/workflow?id=3c727d5cd349a846, https://usegalaxy.org.au/published/workflow?id=3ce9dc804780e4a1, https://usegalaxy.org.au/published/workflow?id=3d5deed70ac9bde4, https://usegalaxy.org.au/published/workflow?id=3e6f755ee62f7301, https://usegalaxy.org.au/published/workflow?id=3ef07022656067b1, https://usegalaxy.org.au/published/workflow?id=408a31694e9c85e6, https://usegalaxy.org.au/published/workflow?id=410d0d19b6589c78, https://usegalaxy.org.au/published/workflow?id=421adea2f259ec26, https://usegalaxy.org.au/published/workflow?id=427e27f87b8048a3, https://usegalaxy.org.au/published/workflow?id=43f2dabbc1932e30, https://usegalaxy.org.au/published/workflow?id=45c8789533c45abf, https://usegalaxy.org.au/published/workflow?id=46f352c70356184a, https://usegalaxy.org.au/published/workflow?id=470eb26144325590, https://usegalaxy.org.au/published/workflow?id=479c6b0a96ea1610, https://usegalaxy.org.au/published/workflow?id=47cacc06d404a8c6, https://usegalaxy.org.au/published/workflow?id=4c7e0703aace6aa3, https://usegalaxy.org.au/published/workflow?id=4e096a68187ce652, https://usegalaxy.org.au/published/workflow?id=4efed79608f85604, https://usegalaxy.org.au/published/workflow?id=4f2818b6620037af, https://usegalaxy.org.au/published/workflow?id=4f562265cbb14cd6, https://usegalaxy.org.au/published/workflow?id=50fdbdb8f807c021, https://usegalaxy.org.au/published/workflow?id=52065a4100b11184, https://usegalaxy.org.au/published/workflow?id=525612313de7591e, https://usegalaxy.org.au/published/workflow?id=52d2fb868defa474, https://usegalaxy.org.au/published/workflow?id=53010c2f1f207429, https://usegalaxy.org.au/published/workflow?id=5314a7a4732a0ef1, https://usegalaxy.org.au/published/workflow?id=533dbb3242ee4255, https://usegalaxy.org.au/published/workflow?id=5442f0437ade82c4, https://usegalaxy.org.au/published/workflow?id=544cb12a16f283b8, https://usegalaxy.org.au/published/workflow?id=557601292ea0f6f3, https://usegalaxy.org.au/published/workflow?id=55c4d97a08a5ca09, https://usegalaxy.org.au/published/workflow?id=56599572e0364e2a, https://usegalaxy.org.au/published/workflow?id=5693811cd933d2a2, https://usegalaxy.org.au/published/workflow?id=581c455f74aa55a4, https://usegalaxy.org.au/published/workflow?id=5926a7669eabb1c6, https://usegalaxy.org.au/published/workflow?id=5a0fc3b91ae47788, https://usegalaxy.org.au/published/workflow?id=5a4e49ef8693d7c4, https://usegalaxy.org.au/published/workflow?id=5be983b903469f07, https://usegalaxy.org.au/published/workflow?id=5cbee52cf03b6f9a, https://usegalaxy.org.au/published/workflow?id=5ce00d3eab862f4e, https://usegalaxy.org.au/published/workflow?id=5d6773ed5b2f41cb, https://usegalaxy.org.au/published/workflow?id=5ea74382fb77eb10, https://usegalaxy.org.au/published/workflow?id=608f3ad8f485e7a8, https://usegalaxy.org.au/published/workflow?id=60c5675ed2f4a7d8, https://usegalaxy.org.au/published/workflow?id=6204bbcfe56931eb, https://usegalaxy.org.au/published/workflow?id=625f3c52832b0591, https://usegalaxy.org.au/published/workflow?id=6448b82959076a29, https://usegalaxy.org.au/published/workflow?id=6469ade8f6f7c718, https://usegalaxy.org.au/published/workflow?id=67191ea9fe977e08, https://usegalaxy.org.au/published/workflow?id=677ef3322366c953, https://usegalaxy.org.au/published/workflow?id=69233fb6edfcdde9, https://usegalaxy.org.au/published/workflow?id=69d91340fc7effa2, https://usegalaxy.org.au/published/workflow?id=6b34c95a247d15e3, https://usegalaxy.org.au/published/workflow?id=6cdbcd1f667d0f16, https://usegalaxy.org.au/published/workflow?id=6e1e24f9e0326930, https://usegalaxy.org.au/published/workflow?id=6f0801fecbba5d3f, https://usegalaxy.org.au/published/workflow?id=723513b09d6690b8, https://usegalaxy.org.au/published/workflow?id=73854e391eec51d0, https://usegalaxy.org.au/published/workflow?id=73ff1aa9acc0ad2a, https://usegalaxy.org.au/published/workflow?id=74186b006665daf8, https://usegalaxy.org.au/published/workflow?id=75113a1b41904d2a, https://usegalaxy.org.au/published/workflow?id=76323f103844f75b, https://usegalaxy.org.au/published/workflow?id=79522a1f7b0c53cb, https://usegalaxy.org.au/published/workflow?id=79572be1bf642251, https://usegalaxy.org.au/published/workflow?id=79f4bdf9aab7c256, https://usegalaxy.org.au/published/workflow?id=7a63fff9a122e60c, https://usegalaxy.org.au/published/workflow?id=7ad277dd448e57b3, https://usegalaxy.org.au/published/workflow?id=7b203d52f496e2c7, https://usegalaxy.org.au/published/workflow?id=7ba13e928de65e61, https://usegalaxy.org.au/published/workflow?id=7becafd394472dfb, https://usegalaxy.org.au/published/workflow?id=7c866ed4a3552d0d, https://usegalaxy.org.au/published/workflow?id=7ea616c652d08fb6, https://usegalaxy.org.au/published/workflow?id=7ef245f5ae3b916d, https://usegalaxy.org.au/published/workflow?id=7fa13ccbf044edc5, https://usegalaxy.org.au/published/workflow?id=7febc6ac6f106e57, https://usegalaxy.org.au/published/workflow?id=803ef29108e36e58, https://usegalaxy.org.au/published/workflow?id=80a1493fb9593bb3, https://usegalaxy.org.au/published/workflow?id=811bbada546850bd, https://usegalaxy.org.au/published/workflow?id=813a4938397cf6ee, https://usegalaxy.org.au/published/workflow?id=8215e0eb265e03a3, https://usegalaxy.org.au/published/workflow?id=83680c1c6dffb05b, https://usegalaxy.org.au/published/workflow?id=83a535840b388980, https://usegalaxy.org.au/published/workflow?id=83c20d8e5fd97313, https://usegalaxy.org.au/published/workflow?id=83e3ceceb1a92493, https://usegalaxy.org.au/published/workflow?id=84589f66ec87ad99, https://usegalaxy.org.au/published/workflow?id=8483ae422665a6c1, https://usegalaxy.org.au/published/workflow?id=8483e8d3e8d0ddc9, https://usegalaxy.org.au/published/workflow?id=8597166abda0a375, https://usegalaxy.org.au/published/workflow?id=85aede91db0122e4, https://usegalaxy.org.au/published/workflow?id=863eee1b041b6c58, https://usegalaxy.org.au/published/workflow?id=869440d35a618836, https://usegalaxy.org.au/published/workflow?id=874492eb776ba813, https://usegalaxy.org.au/published/workflow?id=879d4fb110a61f7a, https://usegalaxy.org.au/published/workflow?id=88c0d875eea2ee49, https://usegalaxy.org.au/published/workflow?id=897dfa78c3b25356, https://usegalaxy.org.au/published/workflow?id=897e9d7432d231e9, https://usegalaxy.org.au/published/workflow?id=8b5897305dcaf076, https://usegalaxy.org.au/published/workflow?id=8b6739a000780d99, https://usegalaxy.org.au/published/workflow?id=8b8a5b50f2edc72c, https://usegalaxy.org.au/published/workflow?id=8c40b4a911517cc5, https://usegalaxy.org.au/published/workflow?id=8cab31db0bd3ff52, https://usegalaxy.org.au/published/workflow?id=8d196c8c62530dc0, https://usegalaxy.org.au/published/workflow?id=8d47811c6154d347, https://usegalaxy.org.au/published/workflow?id=8d6010d07cc2e170, https://usegalaxy.org.au/published/workflow?id=8fb691706f47527a, https://usegalaxy.org.au/published/workflow?id=8fe84de499e96485, https://usegalaxy.org.au/published/workflow?id=914330feb75ea9ab, https://usegalaxy.org.au/published/workflow?id=9176f8ebac92d10c, https://usegalaxy.org.au/published/workflow?id=91c8daa5f2bcf7c0, https://usegalaxy.org.au/published/workflow?id=91cfd96f697ba034, https://usegalaxy.org.au/published/workflow?id=925c167abd5610ae, https://usegalaxy.org.au/published/workflow?id=94c7fdcbbc7b428a, https://usegalaxy.org.au/published/workflow?id=954318db8c8d9219, https://usegalaxy.org.au/published/workflow?id=95a9070469a895c3, https://usegalaxy.org.au/published/workflow?id=95efb414f5984735, https://usegalaxy.org.au/published/workflow?id=975ddb0eb436f1fd, https://usegalaxy.org.au/published/workflow?id=97628b0604d5ec77, https://usegalaxy.org.au/published/workflow?id=978953f492b2b914, https://usegalaxy.org.au/published/workflow?id=981d7b02416b7734, https://usegalaxy.org.au/published/workflow?id=9898348d95033af2, https://usegalaxy.org.au/published/workflow?id=98f285d6f0253b81, https://usegalaxy.org.au/published/workflow?id=99821674db7682bb, https://usegalaxy.org.au/published/workflow?id=9988bc2402f32dc1, https://usegalaxy.org.au/published/workflow?id=9b1afa59c087eacd, https://usegalaxy.org.au/published/workflow?id=9b75924c483b5f6b, https://usegalaxy.org.au/published/workflow?id=9cf3860659285656, https://usegalaxy.org.au/published/workflow?id=9df67170c9260539, https://usegalaxy.org.au/published/workflow?id=9e8d9b7055b7c863, https://usegalaxy.org.au/published/workflow?id=9ec9fe2715d7cfdc, https://usegalaxy.org.au/published/workflow?id=a1c59e9f5c7327d2, https://usegalaxy.org.au/published/workflow?id=a35e5a238a70176a, https://usegalaxy.org.au/published/workflow?id=a3efc48b5992374e, https://usegalaxy.org.au/published/workflow?id=a61d4bda54de7cd1, https://usegalaxy.org.au/published/workflow?id=a69db7f914c06407, https://usegalaxy.org.au/published/workflow?id=a7346c25dfdf2e3e, https://usegalaxy.org.au/published/workflow?id=a763e53653b10ce0, https://usegalaxy.org.au/published/workflow?id=a7726d18d2a5fcf2, https://usegalaxy.org.au/published/workflow?id=a7a30d970584f9ac, https://usegalaxy.org.au/published/workflow?id=a7d1cf2bb636e695, https://usegalaxy.org.au/published/workflow?id=a9fa6101f1fb13e2, https://usegalaxy.org.au/published/workflow?id=aa94c77b720a2810, https://usegalaxy.org.au/published/workflow?id=aaaf580eb00459b6, https://usegalaxy.org.au/published/workflow?id=aae07f802002fdd0, https://usegalaxy.org.au/published/workflow?id=acaca80c4a0c76c8, https://usegalaxy.org.au/published/workflow?id=ad13b4a61e8987b1, https://usegalaxy.org.au/published/workflow?id=ae5dca8108d1a8a6, https://usegalaxy.org.au/published/workflow?id=ae6892f1df022097, https://usegalaxy.org.au/published/workflow?id=ae773dfaa074cb72, https://usegalaxy.org.au/published/workflow?id=aed93da6fd6e4e13, https://usegalaxy.org.au/published/workflow?id=aee5b5645c51cac3, https://usegalaxy.org.au/published/workflow?id=af3f40cba4d7afa6, https://usegalaxy.org.au/published/workflow?id=af7b95f46485308c, https://usegalaxy.org.au/published/workflow?id=af990cca72794142, https://usegalaxy.org.au/published/workflow?id=afd9a8bbc07f9c3f, https://usegalaxy.org.au/published/workflow?id=b0614274c66efa95, https://usegalaxy.org.au/published/workflow?id=b46bc04e0418fdfa, https://usegalaxy.org.au/published/workflow?id=b518ee5540ed01fd, https://usegalaxy.org.au/published/workflow?id=b57bf134896c30ea, https://usegalaxy.org.au/published/workflow?id=b6bad1f167257248, https://usegalaxy.org.au/published/workflow?id=b6db525b1b73394b, https://usegalaxy.org.au/published/workflow?id=b7aa22291322e505, https://usegalaxy.org.au/published/workflow?id=b8c661ff6b79383b, https://usegalaxy.org.au/published/workflow?id=baa763dbdf6afb71, https://usegalaxy.org.au/published/workflow?id=bb0feff5d764df60, https://usegalaxy.org.au/published/workflow?id=bc2994ad0fbe07cd, https://usegalaxy.org.au/published/workflow?id=bc4e3115586cbe62, https://usegalaxy.org.au/published/workflow?id=bd251174d94cde9d, https://usegalaxy.org.au/published/workflow?id=bda98c5a0ea70dd0, https://usegalaxy.org.au/published/workflow?id=bf80ef6e5f37deb7, https://usegalaxy.org.au/published/workflow?id=c1a0a3888d9ee3ac, https://usegalaxy.org.au/published/workflow?id=c296b3848708f6f1, https://usegalaxy.org.au/published/workflow?id=c2e5a43356042b30, https://usegalaxy.org.au/published/workflow?id=c3b3717502ff6f76, https://usegalaxy.org.au/published/workflow?id=c3bb21f20a3ce689, https://usegalaxy.org.au/published/workflow?id=c3e198bc2146b4ad, https://usegalaxy.org.au/published/workflow?id=c456492ce4f963d0, https://usegalaxy.org.au/published/workflow?id=c4d23297f6fbf5f3, https://usegalaxy.org.au/published/workflow?id=c622bd03677314aa, https://usegalaxy.org.au/published/workflow?id=c65a5af6c0383f8c, https://usegalaxy.org.au/published/workflow?id=cb960edf95d2dc35, https://usegalaxy.org.au/published/workflow?id=cc6de673126c56cb, https://usegalaxy.org.au/published/workflow?id=ce7f6a1c824920e2, https://usegalaxy.org.au/published/workflow?id=cef4a514f35576e5, https://usegalaxy.org.au/published/workflow?id=cef68481b305a516, https://usegalaxy.org.au/published/workflow?id=d018214e901419c9, https://usegalaxy.org.au/published/workflow?id=d0933b5040adf902, https://usegalaxy.org.au/published/workflow?id=d126940d33e63036, https://usegalaxy.org.au/published/workflow?id=d1b604a5441dc4b0, https://usegalaxy.org.au/published/workflow?id=d35d05be576e8b13, https://usegalaxy.org.au/published/workflow?id=d3989c6c2c663cd3, https://usegalaxy.org.au/published/workflow?id=d42df3bb51a94a52, https://usegalaxy.org.au/published/workflow?id=d5ecfdbc04b24227, https://usegalaxy.org.au/published/workflow?id=d68e167c3423c795, https://usegalaxy.org.au/published/workflow?id=d78f885b4b86635f, https://usegalaxy.org.au/published/workflow?id=d7a65f577fe5f16b, https://usegalaxy.org.au/published/workflow?id=d8a4a8bc4fa2f9ee, https://usegalaxy.org.au/published/workflow?id=d8ee4c7ef846e30f, https://usegalaxy.org.au/published/workflow?id=daff6854b5dfc6f1, https://usegalaxy.org.au/published/workflow?id=db0867756cb233b7, https://usegalaxy.org.au/published/workflow?id=db0bc7357c181222, https://usegalaxy.org.au/published/workflow?id=db322fe56af3ee5b, https://usegalaxy.org.au/published/workflow?id=db3370a412c4de78, https://usegalaxy.org.au/published/workflow?id=dccc8fb49d61ac33, https://usegalaxy.org.au/published/workflow?id=dce29c35dfac48b1, https://usegalaxy.org.au/published/workflow?id=dd6f465ab1eb10b0, https://usegalaxy.org.au/published/workflow?id=de1c04a2caf70647, https://usegalaxy.org.au/published/workflow?id=e045a6064ad5fdc4, https://usegalaxy.org.au/published/workflow?id=e08b04291839e79a, https://usegalaxy.org.au/published/workflow?id=e08ef6b519f5fba0, https://usegalaxy.org.au/published/workflow?id=e1fd89e7248b6661, https://usegalaxy.org.au/published/workflow?id=e3cda847fe727b61, https://usegalaxy.org.au/published/workflow?id=e4ddf33ee5b5e259, https://usegalaxy.org.au/published/workflow?id=e52a3479c8216291, https://usegalaxy.org.au/published/workflow?id=e62f743342851151, https://usegalaxy.org.au/published/workflow?id=e826584d78b69467, https://usegalaxy.org.au/published/workflow?id=e8d3651c07ce0bec, https://usegalaxy.org.au/published/workflow?id=eaa841e6b7384633, https://usegalaxy.org.au/published/workflow?id=eb3a4535204383fa, https://usegalaxy.org.au/published/workflow?id=ec202ccfb5f03d0d, https://usegalaxy.org.au/published/workflow?id=ec79c2fab8eac15d, https://usegalaxy.org.au/published/workflow?id=ed2f72e3537e8a4a, https://usegalaxy.org.au/published/workflow?id=ee7a1615f187391d, https://usegalaxy.org.au/published/workflow?id=efd39a4be0a9a4e6, https://usegalaxy.org.au/published/workflow?id=f01be6a7685ac476, https://usegalaxy.org.au/published/workflow?id=f0ced9a5d34b2aff, https://usegalaxy.org.au/published/workflow?id=f19d63d7c9a48160, https://usegalaxy.org.au/published/workflow?id=f2541030f6d70b59, https://usegalaxy.org.au/published/workflow?id=f25a05070bf97ded, https://usegalaxy.org.au/published/workflow?id=f268c181a47d0cab, https://usegalaxy.org.au/published/workflow?id=f52fb12383c8a214, https://usegalaxy.org.au/published/workflow?id=f547724fb0b2806a, https://usegalaxy.org.au/published/workflow?id=f5c0b0bc5e023e42, https://usegalaxy.org.au/published/workflow?id=f944f2d3fbd1f062, https://usegalaxy.org.au/published/workflow?id=fa76b66785ce38b8, https://usegalaxy.org.au/published/workflow?id=fb0986a952c35e0a, https://usegalaxy.org.au/published/workflow?id=fb644a9649f36f40, https://usegalaxy.org.au/published/workflow?id=fc64a77321752a3c, https://usegalaxy.org.au/published/workflow?id=fc664a96d8099652, https://usegalaxy.org.au/published/workflow?id=fc6f8afdee980f0e, https://usegalaxy.org.au/published/workflow?id=fd1b3d7f2d34ff09, https://usegalaxy.org.au/published/workflow?id=fd477917a3d27f61, https://usegalaxy.org.au/published/workflow?id=fd8fb237f8dc24c3, https://usegalaxy.org.au/published/workflow?id=fe1de81a97578368, https://usegalaxy.org.au/published/workflow?id=fe893d72526eba71, https://usegalaxy.org.au/published/workflow?id=ff42213dda7d3e59, https://usegalaxy.org/published/workflow?id=0052e9b1b7bfec69, https://usegalaxy.org/published/workflow?id=00a501a1fada4104, https://usegalaxy.org/published/workflow?id=01585f1230125ba1, https://usegalaxy.org/published/workflow?id=02755c14619242da, https://usegalaxy.org/published/workflow?id=02c96a9c6bb708ac, https://usegalaxy.org/published/workflow?id=02d49c5f0d9aa010, https://usegalaxy.org/published/workflow?id=035c28a247976f2c, https://usegalaxy.org/published/workflow?id=037c3a9d872be3de, https://usegalaxy.org/published/workflow?id=03a1cd225af6de69, https://usegalaxy.org/published/workflow?id=044c5ce43f2e1829, https://usegalaxy.org/published/workflow?id=049e6609da2b67c4, https://usegalaxy.org/published/workflow?id=052ba366e32132ec, https://usegalaxy.org/published/workflow?id=0555313573cd1ee2, https://usegalaxy.org/published/workflow?id=0599241ce8eae217, https://usegalaxy.org/published/workflow?id=05bf642dc7c58c40, https://usegalaxy.org/published/workflow?id=0660a00407fc16a1, https://usegalaxy.org/published/workflow?id=06d6dcd2655592af, https://usegalaxy.org/published/workflow?id=07739fbbd53755f6, https://usegalaxy.org/published/workflow?id=07e4414905458c86, https://usegalaxy.org/published/workflow?id=07fdeadce7a6d5cb, https://usegalaxy.org/published/workflow?id=0816aa5461c390d2, https://usegalaxy.org/published/workflow?id=0843c6f15eae2f15, https://usegalaxy.org/published/workflow?id=08f58af7b6cc0ab6, https://usegalaxy.org/published/workflow?id=091896754bcc8ec1, https://usegalaxy.org/published/workflow?id=092be3cf6e40282c, https://usegalaxy.org/published/workflow?id=0930f955bdac93e8, https://usegalaxy.org/published/workflow?id=098375608a1223aa, https://usegalaxy.org/published/workflow?id=0a3513961f0cf9dd, https://usegalaxy.org/published/workflow?id=0a89328e6d28dd07, https://usegalaxy.org/published/workflow?id=0c6dbb2ef5eee5b9, https://usegalaxy.org/published/workflow?id=0cbab8b7044d24f9, https://usegalaxy.org/published/workflow?id=0d6a4dfbccafd2a2, https://usegalaxy.org/published/workflow?id=0d8eb75d28fa7df2, https://usegalaxy.org/published/workflow?id=0d8ec47a84766f96, https://usegalaxy.org/published/workflow?id=0e6a842034ca9aec, https://usegalaxy.org/published/workflow?id=0ee0493f3168cbb3, https://usegalaxy.org/published/workflow?id=0f3f91de5f022b6e, https://usegalaxy.org/published/workflow?id=0f43ad9dfd0f6d16, https://usegalaxy.org/published/workflow?id=0f43fdfe1824e9d7, https://usegalaxy.org/published/workflow?id=10d8d47f97afc999, https://usegalaxy.org/published/workflow?id=11ba260b93522c22, https://usegalaxy.org/published/workflow?id=13460c791ca97689, https://usegalaxy.org/published/workflow?id=14410527253c6f40, https://usegalaxy.org/published/workflow?id=15cca0e249f40aea, https://usegalaxy.org/published/workflow?id=173ecc0c88090d0e, https://usegalaxy.org/published/workflow?id=17a7ff756d37a437, https://usegalaxy.org/published/workflow?id=17a969fa9ac02cec, https://usegalaxy.org/published/workflow?id=17beb47e45a7690c, https://usegalaxy.org/published/workflow?id=18c6e87a884fb5ed, https://usegalaxy.org/published/workflow?id=1b385fd45ee48614, https://usegalaxy.org/published/workflow?id=1b57987895f8ca9e, https://usegalaxy.org/published/workflow?id=1d1ee1fad4e20eeb, https://usegalaxy.org/published/workflow?id=1d748868e78275dd, https://usegalaxy.org/published/workflow?id=1dd60e57d1d00406, https://usegalaxy.org/published/workflow?id=1ddabc7d272dc702, https://usegalaxy.org/published/workflow?id=1deaf458d6d8695a, https://usegalaxy.org/published/workflow?id=1e1a299825f27f11, https://usegalaxy.org/published/workflow?id=1e53fcd07ae5d859, https://usegalaxy.org/published/workflow?id=1e6a0d6395cf6221, https://usegalaxy.org/published/workflow?id=1f4dc0488f0554c6, https://usegalaxy.org/published/workflow?id=1fdd58f4b7a6f643, https://usegalaxy.org/published/workflow?id=20023b26bb60f4df, https://usegalaxy.org/published/workflow?id=204d0da8a023d7da, https://usegalaxy.org/published/workflow?id=20b7ae4b517a80fd, https://usegalaxy.org/published/workflow?id=20da2dcce0ae2ca2, https://usegalaxy.org/published/workflow?id=20fe561687df596c, https://usegalaxy.org/published/workflow?id=21161075002d6778, https://usegalaxy.org/published/workflow?id=21a047a4e068860f, https://usegalaxy.org/published/workflow?id=21b416bcf0b8c8cf, https://usegalaxy.org/published/workflow?id=2219c4aa7eb8cfb8, https://usegalaxy.org/published/workflow?id=228ae7f537a60226, https://usegalaxy.org/published/workflow?id=22f6b939e97d3b47, https://usegalaxy.org/published/workflow?id=2375a915a5b33b39, https://usegalaxy.org/published/workflow?id=23c4e801213eee50, https://usegalaxy.org/published/workflow?id=24663ad42c78106c, https://usegalaxy.org/published/workflow?id=2497103d279cd20e, https://usegalaxy.org/published/workflow?id=24adb067c82862fa, https://usegalaxy.org/published/workflow?id=2524e026f069e885, https://usegalaxy.org/published/workflow?id=2566f7c6bef19b18, https://usegalaxy.org/published/workflow?id=26019c2b056d3a1c, https://usegalaxy.org/published/workflow?id=262ab42118016c41, https://usegalaxy.org/published/workflow?id=2644a8c0da3066c5, https://usegalaxy.org/published/workflow?id=26b2057a8bc0386c, https://usegalaxy.org/published/workflow?id=26c4909f2f3df704, https://usegalaxy.org/published/workflow?id=270e2cb6b02afc9c, https://usegalaxy.org/published/workflow?id=27144c7e44d3f56b, https://usegalaxy.org/published/workflow?id=271b97e5c00c4da4, https://usegalaxy.org/published/workflow?id=27327a985fa9147f, https://usegalaxy.org/published/workflow?id=28abac549697f65a, https://usegalaxy.org/published/workflow?id=2af3de32c630e1b4, https://usegalaxy.org/published/workflow?id=2b0d73370a1577b4, https://usegalaxy.org/published/workflow?id=2bf89464c21ec7cd, https://usegalaxy.org/published/workflow?id=2cbcfeb772f348c9, https://usegalaxy.org/published/workflow?id=2ceff2cf26eae4cd, https://usegalaxy.org/published/workflow?id=2d30be556aab1f52, https://usegalaxy.org/published/workflow?id=2db2d27f0c627f44, https://usegalaxy.org/published/workflow?id=2dd4f04c7de7d173, https://usegalaxy.org/published/workflow?id=2ded909e7e3a9962, https://usegalaxy.org/published/workflow?id=2e4918ad409f7f4e, https://usegalaxy.org/published/workflow?id=2e65bc5f9d9f2a75, https://usegalaxy.org/published/workflow?id=2f21358621337cf2, https://usegalaxy.org/published/workflow?id=30883502ec515fe2, https://usegalaxy.org/published/workflow?id=31acbfc6d3775846, https://usegalaxy.org/published/workflow?id=3269026bb1e0ec42, https://usegalaxy.org/published/workflow?id=334c4fe8929b5029, https://usegalaxy.org/published/workflow?id=33d90e718ce500ef, https://usegalaxy.org/published/workflow?id=35209d092e636cd8, https://usegalaxy.org/published/workflow?id=3565de0b5f5da36f, https://usegalaxy.org/published/workflow?id=36bd1c3d32150b90, https://usegalaxy.org/published/workflow?id=371b242d97f2f030, https://usegalaxy.org/published/workflow?id=39753cc73284963f, https://usegalaxy.org/published/workflow?id=39e79458c9ba581c, https://usegalaxy.org/published/workflow?id=3a51f1f54b2ef024, https://usegalaxy.org/published/workflow?id=3bed12ef73ba93bf, https://usegalaxy.org/published/workflow?id=3c32ad1a07a66843, https://usegalaxy.org/published/workflow?id=3d5347f1e8ee7db2, https://usegalaxy.org/published/workflow?id=3dbe754882a263cd, https://usegalaxy.org/published/workflow?id=3dc57709c4387ba7, https://usegalaxy.org/published/workflow?id=3e2bbafb8c6580af, https://usegalaxy.org/published/workflow?id=3e6d4ab34de7918c, https://usegalaxy.org/published/workflow?id=3f2d1003ff959c7c, https://usegalaxy.org/published/workflow?id=3f8e0395007c8e9e, https://usegalaxy.org/published/workflow?id=3fbaa9ae67362495, https://usegalaxy.org/published/workflow?id=400c1d170f073279, https://usegalaxy.org/published/workflow?id=4054ceeba1a2fa69, https://usegalaxy.org/published/workflow?id=413d7e5aa7378cf1, https://usegalaxy.org/published/workflow?id=414fa13b613b33d8, https://usegalaxy.org/published/workflow?id=415c7152cb78e86f, https://usegalaxy.org/published/workflow?id=41bbf3cd893d400a, https://usegalaxy.org/published/workflow?id=41efc922cf146e0c, https://usegalaxy.org/published/workflow?id=427fce51fd9508eb, https://usegalaxy.org/published/workflow?id=43861b38cf6e927e, https://usegalaxy.org/published/workflow?id=43c39bc86399188f, https://usegalaxy.org/published/workflow?id=43ca7614f6bb03d2, https://usegalaxy.org/published/workflow?id=4458439388155d92, https://usegalaxy.org/published/workflow?id=446a9297e64ecb72, https://usegalaxy.org/published/workflow?id=449a419bcfd3c49e, https://usegalaxy.org/published/workflow?id=462261c5e22635f0, https://usegalaxy.org/published/workflow?id=46d035f814a9b4f8, https://usegalaxy.org/published/workflow?id=46e4acdc08eb3ea5, https://usegalaxy.org/published/workflow?id=46f184a0e95f3c1c, https://usegalaxy.org/published/workflow?id=4703371e94b67347, https://usegalaxy.org/published/workflow?id=470b41d0e43bb46b, https://usegalaxy.org/published/workflow?id=48963532e030de6c, https://usegalaxy.org/published/workflow?id=48adcc44fe62a99c, https://usegalaxy.org/published/workflow?id=48dafc35989f13b1, https://usegalaxy.org/published/workflow?id=48dd684196c65735, https://usegalaxy.org/published/workflow?id=496b0e8a0e5a4191, https://usegalaxy.org/published/workflow?id=49c61c378cacfe02, https://usegalaxy.org/published/workflow?id=49f8b32c3206f76c, https://usegalaxy.org/published/workflow?id=4a5730954d776cb2, https://usegalaxy.org/published/workflow?id=4a95226c24ccbf3c, https://usegalaxy.org/published/workflow?id=4d0607d3589e0775, https://usegalaxy.org/published/workflow?id=4d251ecda59c87c5, https://usegalaxy.org/published/workflow?id=4dbac8374419d29e, https://usegalaxy.org/published/workflow?id=4de095b92ed661ac, https://usegalaxy.org/published/workflow?id=4e1ae78405034ad3, https://usegalaxy.org/published/workflow?id=4e3efbdd0c4c3e64, https://usegalaxy.org/published/workflow?id=4e48eefdb85f1329, https://usegalaxy.org/published/workflow?id=4e6005819e57ed35, https://usegalaxy.org/published/workflow?id=4ed9f54caa932479, https://usegalaxy.org/published/workflow?id=4f459cfef6108e75, https://usegalaxy.org/published/workflow?id=50206b10de958d03, https://usegalaxy.org/published/workflow?id=50fb074833eb9836, https://usegalaxy.org/published/workflow?id=51754f5039d2f244, https://usegalaxy.org/published/workflow?id=51c485af11d90700, https://usegalaxy.org/published/workflow?id=5203bc68df3cf819, https://usegalaxy.org/published/workflow?id=526b05cbffecbc85, https://usegalaxy.org/published/workflow?id=528ed34505b1a993, https://usegalaxy.org/published/workflow?id=529c6c68df669c51, https://usegalaxy.org/published/workflow?id=53834a5fb46ca0f6, https://usegalaxy.org/published/workflow?id=53d65fd38b9b8c1b, https://usegalaxy.org/published/workflow?id=5497e8630ebfeb42, https://usegalaxy.org/published/workflow?id=55c09bcdf3d7ae16, https://usegalaxy.org/published/workflow?id=5626a440a5798458, https://usegalaxy.org/published/workflow?id=5641d1cbe795203f, https://usegalaxy.org/published/workflow?id=574e42683dc3961b, https://usegalaxy.org/published/workflow?id=57726b39bbfb0c54, https://usegalaxy.org/published/workflow?id=57cfc1b5d9ea0d72, https://usegalaxy.org/published/workflow?id=57f4c6f5206edfcb, https://usegalaxy.org/published/workflow?id=57fdd0bae83f2c97, https://usegalaxy.org/published/workflow?id=582f3de3971fc38c, https://usegalaxy.org/published/workflow?id=58a91a914e381dcf, https://usegalaxy.org/published/workflow?id=58ce6470337a190d, https://usegalaxy.org/published/workflow?id=58ceaed0a42fe60a, https://usegalaxy.org/published/workflow?id=5944c5effd56b0d6, https://usegalaxy.org/published/workflow?id=5951d11d3122abed, https://usegalaxy.org/published/workflow?id=59659e3a065c642c, https://usegalaxy.org/published/workflow?id=5a272f266a1fa4ac, https://usegalaxy.org/published/workflow?id=5aa2caa2dcae1477, https://usegalaxy.org/published/workflow?id=5b2bb861501fa248, https://usegalaxy.org/published/workflow?id=5b74b780d3955eb3, https://usegalaxy.org/published/workflow?id=5cad854edbbd3b69, https://usegalaxy.org/published/workflow?id=5cb86cdc33296cc2, https://usegalaxy.org/published/workflow?id=5ce5b3061c6afd82, https://usegalaxy.org/published/workflow?id=5df593510c7d944d, https://usegalaxy.org/published/workflow?id=5eb2e090df59d9a9, https://usegalaxy.org/published/workflow?id=5efe288b18c7d0ab, https://usegalaxy.org/published/workflow?id=5f878c4cc3bff68c, https://usegalaxy.org/published/workflow?id=5fa548beeb1411f2, https://usegalaxy.org/published/workflow?id=5ffeb9904cf5f0bf, https://usegalaxy.org/published/workflow?id=60e999ef3dcff4ca, https://usegalaxy.org/published/workflow?id=60f0d0d5d6e93941, https://usegalaxy.org/published/workflow?id=61d03396ad7f25b9, https://usegalaxy.org/published/workflow?id=61d324b1eca6300e, https://usegalaxy.org/published/workflow?id=623dcf47f7963700, https://usegalaxy.org/published/workflow?id=62436fe121e035e7, https://usegalaxy.org/published/workflow?id=62ae08ab1133c22f, https://usegalaxy.org/published/workflow?id=62b052f47ccf0a8c, https://usegalaxy.org/published/workflow?id=63d590e8567f7157, https://usegalaxy.org/published/workflow?id=658f6e4985b6e4a7, https://usegalaxy.org/published/workflow?id=668df61f85b5b166, https://usegalaxy.org/published/workflow?id=67c2ca24bc0be58e, https://usegalaxy.org/published/workflow?id=67e3457099db3ed2, https://usegalaxy.org/published/workflow?id=67e56a9919ed84f7, https://usegalaxy.org/published/workflow?id=6822f413a3b09cb4, https://usegalaxy.org/published/workflow?id=683a0ab042fa34c9, https://usegalaxy.org/published/workflow?id=688a55b9ec2f5bf7, https://usegalaxy.org/published/workflow?id=68d05aae72fcd2c9, https://usegalaxy.org/published/workflow?id=692a2b0bb818336d, https://usegalaxy.org/published/workflow?id=69514a75e4c9af08, https://usegalaxy.org/published/workflow?id=695152887ca01bf0, https://usegalaxy.org/published/workflow?id=695d20ef3ee4cf1e, https://usegalaxy.org/published/workflow?id=6a08af55c086ec62, https://usegalaxy.org/published/workflow?id=6c49d9c25ba4ddf5, https://usegalaxy.org/published/workflow?id=6cb8b40b819f2764, https://usegalaxy.org/published/workflow?id=6d0a3f36d2736087, https://usegalaxy.org/published/workflow?id=6d60c4491138813a, https://usegalaxy.org/published/workflow?id=6d68f56abf9c624d, https://usegalaxy.org/published/workflow?id=6d8f0be547b12528, https://usegalaxy.org/published/workflow?id=6da54816b436dc58, https://usegalaxy.org/published/workflow?id=6dada297572d77bd, https://usegalaxy.org/published/workflow?id=6dd383fd86fea674, https://usegalaxy.org/published/workflow?id=6e6651ae846d8f83, https://usegalaxy.org/published/workflow?id=6ec8b101d24a0f4f, https://usegalaxy.org/published/workflow?id=7022c4d9af725e5c, https://usegalaxy.org/published/workflow?id=70dacee3da375e2b, https://usegalaxy.org/published/workflow?id=7114515b82c5f62a, https://usegalaxy.org/published/workflow?id=712d9ae42b45c4b9, https://usegalaxy.org/published/workflow?id=71f129d96b81851e, https://usegalaxy.org/published/workflow?id=71f8a4090877f171, https://usegalaxy.org/published/workflow?id=7203eb3b663bca11, https://usegalaxy.org/published/workflow?id=7251c6e0dad8f927, https://usegalaxy.org/published/workflow?id=725f7ffa1cffa069, https://usegalaxy.org/published/workflow?id=7321c6ad5425d347, https://usegalaxy.org/published/workflow?id=734e08331f8f34b7, https://usegalaxy.org/published/workflow?id=73d98e5f821a78b3, https://usegalaxy.org/published/workflow?id=7551458d929355c2, https://usegalaxy.org/published/workflow?id=75f14618020c922a, https://usegalaxy.org/published/workflow?id=7610b7797d71993a, https://usegalaxy.org/published/workflow?id=76247065c01f01d1, https://usegalaxy.org/published/workflow?id=7643e66a9b4e9c11, https://usegalaxy.org/published/workflow?id=76b8ed1c68678b62, https://usegalaxy.org/published/workflow?id=76fff93650152579, https://usegalaxy.org/published/workflow?id=779ea0b19d07a1bd, https://usegalaxy.org/published/workflow?id=77e4bb9d6aea0c9a, https://usegalaxy.org/published/workflow?id=78979ec454b98338, https://usegalaxy.org/published/workflow?id=794e7e952003d3d9, https://usegalaxy.org/published/workflow?id=7965d84a9f71da93, https://usegalaxy.org/published/workflow?id=7a203cf1678df56d, https://usegalaxy.org/published/workflow?id=7a2b4675c758f34e, https://usegalaxy.org/published/workflow?id=7a33bc2d0970b502, https://usegalaxy.org/published/workflow?id=7b19452fe35b8b17, https://usegalaxy.org/published/workflow?id=7c3faadda8f89749, https://usegalaxy.org/published/workflow?id=7d110e1fca0ac973, https://usegalaxy.org/published/workflow?id=7decdde67868ed0f, https://usegalaxy.org/published/workflow?id=7e81153760fb4c90, https://usegalaxy.org/published/workflow?id=7ee7412cdd82f1ee, https://usegalaxy.org/published/workflow?id=803215ef8142c069, https://usegalaxy.org/published/workflow?id=8041fad92ef6e904, https://usegalaxy.org/published/workflow?id=8111bb9bb26bb665, https://usegalaxy.org/published/workflow?id=8356ee639055cbca, https://usegalaxy.org/published/workflow?id=839cac17365affb7, https://usegalaxy.org/published/workflow?id=83fbcdf3e29c41d0, https://usegalaxy.org/published/workflow?id=840a7be198dc8ae4, https://usegalaxy.org/published/workflow?id=846b6fa2b8e20c3c, https://usegalaxy.org/published/workflow?id=865d2cc4d14ec7e1, https://usegalaxy.org/published/workflow?id=8689dc9eac10c871, https://usegalaxy.org/published/workflow?id=86b802ea75d18160, https://usegalaxy.org/published/workflow?id=8700f593a3d642f5, https://usegalaxy.org/published/workflow?id=87fab09e4c592435, https://usegalaxy.org/published/workflow?id=884ee0057bde9135, https://usegalaxy.org/published/workflow?id=89660361d4121fa8, https://usegalaxy.org/published/workflow?id=8b08a05c5926dd0f, https://usegalaxy.org/published/workflow?id=8b133c1d302c8681, https://usegalaxy.org/published/workflow?id=8b2c8c8ce121177d, https://usegalaxy.org/published/workflow?id=8c1516493c55bf7d, https://usegalaxy.org/published/workflow?id=8c4fcd4bd9d5a72d, https://usegalaxy.org/published/workflow?id=8caea3788657235d, https://usegalaxy.org/published/workflow?id=8daa91d54040ba95, https://usegalaxy.org/published/workflow?id=8e32b0a5a141543e, https://usegalaxy.org/published/workflow?id=8ed3444a692f8e61, https://usegalaxy.org/published/workflow?id=906cc2c2d4e24483, https://usegalaxy.org/published/workflow?id=916a116b69ac5eeb, https://usegalaxy.org/published/workflow?id=92875b13082b5568, https://usegalaxy.org/published/workflow?id=930b554aa4b76ee1, https://usegalaxy.org/published/workflow?id=93650de42fb8c015, https://usegalaxy.org/published/workflow?id=93bfbd7db42db543, https://usegalaxy.org/published/workflow?id=947340358dd268ea, https://usegalaxy.org/published/workflow?id=958f78270fc8f55c, https://usegalaxy.org/published/workflow?id=97064f2af2f30dc4, https://usegalaxy.org/published/workflow?id=98286b6154e1b57f, https://usegalaxy.org/published/workflow?id=99bc7ba3faa7ed55, https://usegalaxy.org/published/workflow?id=9a1fb6ecff886358, https://usegalaxy.org/published/workflow?id=9b32025036bdacb9, https://usegalaxy.org/published/workflow?id=9b4323b68f609e06, https://usegalaxy.org/published/workflow?id=9b5ae15bb9aaba48, https://usegalaxy.org/published/workflow?id=9bace540b35b1e61, https://usegalaxy.org/published/workflow?id=9bf1d223a57f88da, https://usegalaxy.org/published/workflow?id=9c022f4028de0bc6, https://usegalaxy.org/published/workflow?id=9c0bbf9e1c90cd66, https://usegalaxy.org/published/workflow?id=9d2d8c39b63d8ef0, https://usegalaxy.org/published/workflow?id=9d456396b9cd79d7, https://usegalaxy.org/published/workflow?id=9d626a89800a96ca, https://usegalaxy.org/published/workflow?id=9e187245d39c7864, https://usegalaxy.org/published/workflow?id=9e74e3455e47c813, https://usegalaxy.org/published/workflow?id=9f5f2e309a3ea50c, https://usegalaxy.org/published/workflow?id=a0451d7084d7732b, https://usegalaxy.org/published/workflow?id=a23bf4cd3bc97f2a, https://usegalaxy.org/published/workflow?id=a37961bf3d435918, https://usegalaxy.org/published/workflow?id=a3f7a57dbf8f0741, https://usegalaxy.org/published/workflow?id=a4f7af1e2cd826c3, https://usegalaxy.org/published/workflow?id=a67afbea4b2eb26b, https://usegalaxy.org/published/workflow?id=a719660eb1877f54, https://usegalaxy.org/published/workflow?id=a71fcbc60caae8b6, https://usegalaxy.org/published/workflow?id=a743746151101352, https://usegalaxy.org/published/workflow?id=a86b1f1682bb4a62, https://usegalaxy.org/published/workflow?id=a89008fccc1f1d17, https://usegalaxy.org/published/workflow?id=a89d1b74566d516d, https://usegalaxy.org/published/workflow?id=a89def2c2462674a, https://usegalaxy.org/published/workflow?id=a89e1018a00b883c, https://usegalaxy.org/published/workflow?id=a89eaad3f42ec41c, https://usegalaxy.org/published/workflow?id=a8b9252fad5fe06a, https://usegalaxy.org/published/workflow?id=a8ddab36010ed4c3, https://usegalaxy.org/published/workflow?id=a98a3ac1a41752bc, https://usegalaxy.org/published/workflow?id=aac2ae0419f7d515, https://usegalaxy.org/published/workflow?id=ab6e4277fc825c5d, https://usegalaxy.org/published/workflow?id=ab8590a0ee1b9951, https://usegalaxy.org/published/workflow?id=ac8b74b911778fbc, https://usegalaxy.org/published/workflow?id=ad6143e2f74e1e94, https://usegalaxy.org/published/workflow?id=adf531bc12766c9b, https://usegalaxy.org/published/workflow?id=ae523fe6c9183e58, https://usegalaxy.org/published/workflow?id=ae81cc0e8263d03e, https://usegalaxy.org/published/workflow?id=ae83fb92e697e009, https://usegalaxy.org/published/workflow?id=af5acb5dd7bfac56, https://usegalaxy.org/published/workflow?id=afb67b4b9952f57d, https://usegalaxy.org/published/workflow?id=b094b6e1e7d48416, https://usegalaxy.org/published/workflow?id=b0a12221ce09c001, https://usegalaxy.org/published/workflow?id=b0e19e7315b64c87, https://usegalaxy.org/published/workflow?id=b1004c9974ceb785, https://usegalaxy.org/published/workflow?id=b16a1642e2cd54a2, https://usegalaxy.org/published/workflow?id=b18a41e364650fee, https://usegalaxy.org/published/workflow?id=b1a98a2d5ebda1c5, https://usegalaxy.org/published/workflow?id=b1b75a9323d25085, https://usegalaxy.org/published/workflow?id=b2176abeb937f026, https://usegalaxy.org/published/workflow?id=b26501a4a85bfdeb, https://usegalaxy.org/published/workflow?id=b2e81f82ccf3afd6, https://usegalaxy.org/published/workflow?id=b3026f28a45626a5, https://usegalaxy.org/published/workflow?id=b33ad2032a655706, https://usegalaxy.org/published/workflow?id=b3823d276917baf0, https://usegalaxy.org/published/workflow?id=b4090679dcca6ce2, https://usegalaxy.org/published/workflow?id=b43b72dcf5f7694d, https://usegalaxy.org/published/workflow?id=b461ac6f18e0c9cf, https://usegalaxy.org/published/workflow?id=b4d57f2aa0678ad2, https://usegalaxy.org/published/workflow?id=b50f2446d5e60334, https://usegalaxy.org/published/workflow?id=b55a27a75c63de66, https://usegalaxy.org/published/workflow?id=b561d3d9645a2726, https://usegalaxy.org/published/workflow?id=b68ec42db8953569, https://usegalaxy.org/published/workflow?id=b6d90898e2db6aba, https://usegalaxy.org/published/workflow?id=b77fa73d4fbde131, https://usegalaxy.org/published/workflow?id=b7817a12dbee583c, https://usegalaxy.org/published/workflow?id=b7e20495b47d5b97, https://usegalaxy.org/published/workflow?id=b8804291f2754fc8, https://usegalaxy.org/published/workflow?id=b9d8a7ee3f5a3f67, https://usegalaxy.org/published/workflow?id=b9e3676a84b7be5d, https://usegalaxy.org/published/workflow?id=b9e6ddbc79904844, https://usegalaxy.org/published/workflow?id=ba347b695dbff2ea, https://usegalaxy.org/published/workflow?id=ba405b449e27ba37, https://usegalaxy.org/published/workflow?id=ba68fd4b4348e63c, https://usegalaxy.org/published/workflow?id=baab0758f2240225, https://usegalaxy.org/published/workflow?id=badd4b56dbdeaba7, https://usegalaxy.org/published/workflow?id=bb16936081b820f6, https://usegalaxy.org/published/workflow?id=bb9e69ae66c3d916, https://usegalaxy.org/published/workflow?id=bbe958a8c0bf4955, https://usegalaxy.org/published/workflow?id=bcce65725298ff33, https://usegalaxy.org/published/workflow?id=bceb6ae418bef9b8, https://usegalaxy.org/published/workflow?id=bd00c8a7a3b7e5be, https://usegalaxy.org/published/workflow?id=bd184804cfddafc4, https://usegalaxy.org/published/workflow?id=bdfb27e4ef7b6138, https://usegalaxy.org/published/workflow?id=bf90f2bd20fbff21, https://usegalaxy.org/published/workflow?id=bfd3ba54576d2d81, https://usegalaxy.org/published/workflow?id=bfee1238c70627cb, https://usegalaxy.org/published/workflow?id=c11dfc3314e33b33, https://usegalaxy.org/published/workflow?id=c24cfddfc88a97a3, https://usegalaxy.org/published/workflow?id=c30f6ca171896908, https://usegalaxy.org/published/workflow?id=c3b3b2ee14bbd374, https://usegalaxy.org/published/workflow?id=c446105e87750aa2, https://usegalaxy.org/published/workflow?id=c4aaf11b0cb6e5ac, https://usegalaxy.org/published/workflow?id=c4af6c5f5dfaae82, https://usegalaxy.org/published/workflow?id=c4cde7e8d897cd25, https://usegalaxy.org/published/workflow?id=c57c820557ae9b55, https://usegalaxy.org/published/workflow?id=c64719e91e7346a2, https://usegalaxy.org/published/workflow?id=c65bec6c332bf740, https://usegalaxy.org/published/workflow?id=c75fcf2b7ba057fd, https://usegalaxy.org/published/workflow?id=c95fc8692a886a59, https://usegalaxy.org/published/workflow?id=c9a8fd89224e7414, https://usegalaxy.org/published/workflow?id=c9e442a395fc1a58, https://usegalaxy.org/published/workflow?id=cb03300161109123, https://usegalaxy.org/published/workflow?id=cd3bce36b6ef073d, https://usegalaxy.org/published/workflow?id=cd4b5b62f1eed51b, https://usegalaxy.org/published/workflow?id=cdea4f88ccbd155f, https://usegalaxy.org/published/workflow?id=ced446bf2428497b, https://usegalaxy.org/published/workflow?id=cf2dbc29ca20ebee, https://usegalaxy.org/published/workflow?id=cfa9e6e722b086c8, https://usegalaxy.org/published/workflow?id=cfd37af9d6e4cbdb, https://usegalaxy.org/published/workflow?id=d0981820adf9c7d2, https://usegalaxy.org/published/workflow?id=d196c3bde666eccb, https://usegalaxy.org/published/workflow?id=d2864aa3631b3bf6, https://usegalaxy.org/published/workflow?id=d2edc47cc7963885, https://usegalaxy.org/published/workflow?id=d2f7fd589a91124a, https://usegalaxy.org/published/workflow?id=d314df52f2f51502, https://usegalaxy.org/published/workflow?id=d3704f2927e3065e, https://usegalaxy.org/published/workflow?id=d3e656ab45f40c11, https://usegalaxy.org/published/workflow?id=d5062ef48aa246d8, https://usegalaxy.org/published/workflow?id=d50b2df115706adb, https://usegalaxy.org/published/workflow?id=d5514e327878b531, https://usegalaxy.org/published/workflow?id=d69ea491b99016f4, https://usegalaxy.org/published/workflow?id=d7049965ca7d8ea9, https://usegalaxy.org/published/workflow?id=d761637d43ee0324, https://usegalaxy.org/published/workflow?id=d7d65ee5c5ca951f, https://usegalaxy.org/published/workflow?id=d7e14ff032a6ac4f, https://usegalaxy.org/published/workflow?id=d82db9c29b998f22, https://usegalaxy.org/published/workflow?id=d85f8ef78040fbb1, https://usegalaxy.org/published/workflow?id=d86b28c8c2e0e64d, https://usegalaxy.org/published/workflow?id=d89e626fa4f9434f, https://usegalaxy.org/published/workflow?id=d8afd017905d6702, https://usegalaxy.org/published/workflow?id=d97a88a8f9061e25, https://usegalaxy.org/published/workflow?id=db0671862a57968d, https://usegalaxy.org/published/workflow?id=db08887d7d6dc147, https://usegalaxy.org/published/workflow?id=db8443163482a2e0, https://usegalaxy.org/published/workflow?id=dbcf0fbf5329b3fb, https://usegalaxy.org/published/workflow?id=dbdc894ad54675a8, https://usegalaxy.org/published/workflow?id=dc7f05cb5a62da77, https://usegalaxy.org/published/workflow?id=dcc7c5fdef8780fd, https://usegalaxy.org/published/workflow?id=ddb737f2ad0589e8, https://usegalaxy.org/published/workflow?id=de2861cdbd4e29ce, https://usegalaxy.org/published/workflow?id=dec0cf06fa059e65, https://usegalaxy.org/published/workflow?id=df1fa0b73f741a9c, https://usegalaxy.org/published/workflow?id=df6b9760e071b91b, https://usegalaxy.org/published/workflow?id=df6c398b2d4f1e99, https://usegalaxy.org/published/workflow?id=e035be74e3c85bf5, https://usegalaxy.org/published/workflow?id=e04f443a8ceca0d2, https://usegalaxy.org/published/workflow?id=e0c33057ac2670ba, https://usegalaxy.org/published/workflow?id=e12324f5e3b930fd, https://usegalaxy.org/published/workflow?id=e20e1371e50bdcee, https://usegalaxy.org/published/workflow?id=e22ea88bc0fdc146, https://usegalaxy.org/published/workflow?id=e2c77aeabb8053b4, https://usegalaxy.org/published/workflow?id=e2d7b8a4e6c422a3, https://usegalaxy.org/published/workflow?id=e33f6a058c5f57e5, https://usegalaxy.org/published/workflow?id=e4e5dec116e7240b, https://usegalaxy.org/published/workflow?id=e51aaf4d6b16b4d4, https://usegalaxy.org/published/workflow?id=e57d595b0cde1614, https://usegalaxy.org/published/workflow?id=e5a01f746bc9e9b5, https://usegalaxy.org/published/workflow?id=e64a6119053cb126, https://usegalaxy.org/published/workflow?id=e65eb8a3bafde22b, https://usegalaxy.org/published/workflow?id=e67db5dc8eab60f3, https://usegalaxy.org/published/workflow?id=e6838c861b6beaed, https://usegalaxy.org/published/workflow?id=e6a6223ef5ef85a7, https://usegalaxy.org/published/workflow?id=e6b48a02789d1879, https://usegalaxy.org/published/workflow?id=e6b803c1232cd08e, https://usegalaxy.org/published/workflow?id=e6f57346a02be07f, https://usegalaxy.org/published/workflow?id=e7030b62a3335bd7, https://usegalaxy.org/published/workflow?id=e745c45651d829b8, https://usegalaxy.org/published/workflow?id=e7586d70715207b5, https://usegalaxy.org/published/workflow?id=e75bd7d392e65209, https://usegalaxy.org/published/workflow?id=e7bfa3c733835b22, https://usegalaxy.org/published/workflow?id=ea817818a6de77e0, https://usegalaxy.org/published/workflow?id=eb01b539d17580c3, https://usegalaxy.org/published/workflow?id=eb20150175a6ab03, https://usegalaxy.org/published/workflow?id=eb33df15225b8aa0, https://usegalaxy.org/published/workflow?id=eb4b32fcf4a9f64a, https://usegalaxy.org/published/workflow?id=ebbcdc389aad0eb8, https://usegalaxy.org/published/workflow?id=ebc9aad36017b567, https://usegalaxy.org/published/workflow?id=ec3d8d5d1531f92e, https://usegalaxy.org/published/workflow?id=ec96e3bf30d5f771, https://usegalaxy.org/published/workflow?id=ecb279a9114140ab, https://usegalaxy.org/published/workflow?id=edb299ecbf147618, https://usegalaxy.org/published/workflow?id=eed1aadf2fb83f6c, https://usegalaxy.org/published/workflow?id=ef44d02a79bd28bf, https://usegalaxy.org/published/workflow?id=efb10012b8448b21, https://usegalaxy.org/published/workflow?id=f0feca8af9aeddba, https://usegalaxy.org/published/workflow?id=f1a9667c0b0999f4, https://usegalaxy.org/published/workflow?id=f23e5f333987a89f, https://usegalaxy.org/published/workflow?id=f2d3abc6c45c4839, https://usegalaxy.org/published/workflow?id=f302d673420a9bdd, https://usegalaxy.org/published/workflow?id=f39603063febba82, https://usegalaxy.org/published/workflow?id=f3aba99a8204081e, https://usegalaxy.org/published/workflow?id=f3ed710e251833a7, https://usegalaxy.org/published/workflow?id=f47f0b25c1405128, https://usegalaxy.org/published/workflow?id=f4ed1c9434ed0445, https://usegalaxy.org/published/workflow?id=f5805e66642fed04, https://usegalaxy.org/published/workflow?id=f58970e6914a1bba, https://usegalaxy.org/published/workflow?id=f60818a405f1bbbd, https://usegalaxy.org/published/workflow?id=f63f7a0a33a83841, https://usegalaxy.org/published/workflow?id=f823b87dd06ba4ac, https://usegalaxy.org/published/workflow?id=f88f186bc851e954, https://usegalaxy.org/published/workflow?id=f926e70bee242785, https://usegalaxy.org/published/workflow?id=f961fc46d4fddecc, https://usegalaxy.org/published/workflow?id=f9d546aae406cf15, https://usegalaxy.org/published/workflow?id=fae519dcba6bfc72, https://usegalaxy.org/published/workflow?id=fb01e1a49793c8be, https://usegalaxy.org/published/workflow?id=fb903de4aa4d5090, https://usegalaxy.org/published/workflow?id=fc09d17e0bce18f8, https://usegalaxy.org/published/workflow?id=fca70e1bf761c6a2, https://usegalaxy.org/published/workflow?id=fcce98489c8ca7a3, https://usegalaxy.org/published/workflow?id=fd30cdfe7e38b508, https://usegalaxy.org/published/workflow?id=fe262214fba1cb8e, https://usegalaxy.org/published/workflow?id=fe2c0e4694c56b6b, https://usegalaxy.org/published/workflow?id=ff137b61d4ef1b86, https://usegalaxy.org/published/workflow?id=ff35347c4e2f0e81, https://workflowhub.eu/workflows/1061?version=1, https://workflowhub.eu/workflows/1114?version=1, https://workflowhub.eu/workflows/1271?version=3, https://workflowhub.eu/workflows/1272?version=2, https://workflowhub.eu/workflows/1439?version=1, https://workflowhub.eu/workflows/1444?version=2, https://workflowhub.eu/workflows/1466?version=2, https://workflowhub.eu/workflows/1473?version=1, https://workflowhub.eu/workflows/1480?version=1, https://workflowhub.eu/workflows/1481?version=1, https://workflowhub.eu/workflows/1492?version=2, https://workflowhub.eu/workflows/1506?version=1, https://workflowhub.eu/workflows/1507?version=1, https://workflowhub.eu/workflows/1534?version=1, https://workflowhub.eu/workflows/1566?version=1, https://workflowhub.eu/workflows/1568?version=1, https://workflowhub.eu/workflows/1585?version=1, https://workflowhub.eu/workflows/1598?version=1, https://workflowhub.eu/workflows/1602?version=1, https://workflowhub.eu/workflows/1606?version=1, https://workflowhub.eu/workflows/1613?version=1, https://workflowhub.eu/workflows/1615?version=1, https://workflowhub.eu/workflows/1619?version=1, https://workflowhub.eu/workflows/1622?version=1, https://workflowhub.eu/workflows/1631?version=1, https://workflowhub.eu/workflows/1640?version=1, https://workflowhub.eu/workflows/1651?version=1, https://workflowhub.eu/workflows/1657?version=1, https://workflowhub.eu/workflows/1659?version=1, https://workflowhub.eu/workflows/1661?version=1, https://workflowhub.eu/workflows/1665?version=1, https://workflowhub.eu/workflows/1666?version=1, https://workflowhub.eu/workflows/1668?version=1, https://workflowhub.eu/workflows/1673?version=1, https://workflowhub.eu/workflows/1675?version=1, https://workflowhub.eu/workflows/1678?version=1, https://workflowhub.eu/workflows/1681?version=1, https://workflowhub.eu/workflows/1685?version=1, https://workflowhub.eu/workflows/1688?version=1, https://workflowhub.eu/workflows/1692?version=1, https://workflowhub.eu/workflows/1702?version=1, https://workflowhub.eu/workflows/1706?version=1, https://workflowhub.eu/workflows/1716?version=1, https://workflowhub.eu/workflows/1717?version=1, https://workflowhub.eu/workflows/1767?version=1, https://workflowhub.eu/workflows/220?version=2, https://workflowhub.eu/workflows/222?version=1, https://workflowhub.eu/workflows/232?version=1, https://workflowhub.eu/workflows/233?version=1, https://workflowhub.eu/workflows/338?version=1, https://workflowhub.eu/workflows/346?version=1, https://workflowhub.eu/workflows/601?version=2, https://workflowhub.eu/workflows/602?version=2, https://workflowhub.eu/workflows/628?version=1, https://workflowhub.eu/workflows/655?version=1, https://workflowhub.eu/workflows/66?version=1, https://workflowhub.eu/workflows/676?version=1, https://workflowhub.eu/workflows/67?version=1, https://workflowhub.eu/workflows/688?version=1, https://workflowhub.eu/workflows/876?version=1 |
assembly/general-introduction, assembly/largegenome, assembly/metagenomics-assembly, assembly/mrsa-illumina, assembly/mrsa-nanopore, assembly/unicycler-assembly, ecology/Obitools-metabarcoding, ecology/de-novo-rad-seq, ecology/ref-based-rad-seq, epigenetics/atac-seq, epigenetics/estrogen-receptor-binding-site-identification, epigenetics/formation_of_super-structures_on_xi, epigenetics/methylation-seq, epigenetics/tal1-binding-site-identification, genome-annotation/crispr-screen, introduction/galaxy-intro-short, microbiome/beer-data-analysis, microbiome/metagenomics-assembly, microbiome/metatranscriptomics, microbiome/metatranscriptomics-short, microbiome/nanopore-16S-metagenomics, microbiome/pathogen-detection-from-nanopore-foodborne-data, sequence-analysis/mapping, sequence-analysis/quality-control, sequence-analysis/sars-with-galaxy-on-anvil, single-cell/scatac-preprocessing-tenx, single-cell/scrna-umis, transcriptomics/clipseq, transcriptomics/de-novo, transcriptomics/differential-isoform-expression, transcriptomics/full-de-novo, transcriptomics/minerva-pathways, transcriptomics/mirna-target-finder, transcriptomics/rna-interactome, transcriptomics/rna-seq-reads-to-counts, transcriptomics/srna, variant-analysis/dunovo, variant-analysis/exome-seq, variant-analysis/non-dip, variant-analysis/somatic-variant-discovery, variant-analysis/somatic-variants, variant-analysis/tb-variant-analysis |
|
fastqe |
fastqe |
FASTQE |
2020-07-13 |
https://fastqe.com/ |
0.3.1+galaxy0 |
fastqe |
0.3.3 |
To update |
Sequence Analysis |
Sequencing quality control |
Sequencing quality control |
Sequence analysis, Sequencing |
Sequence analysis, Sequencing |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastqe |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastqe |
fastqe |
FASTQE |
Compute quality stats for FASTQ files and print those stats as emoji... for some reason. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
2748 |
2748 |
5999 |
5999 |
5370 |
5370 |
11770 |
11770 |
1047 |
1047 |
2786 |
2786 |
268 |
268 |
453 |
453 |
21008 |
21008 |
9433 |
9433 |
https://usegalaxy.eu/published/workflow?id=055eae88be2d4dd7, https://usegalaxy.eu/published/workflow?id=2a274e0e4ba45c77, https://usegalaxy.eu/published/workflow?id=340aa3ae5468deb0, https://usegalaxy.eu/published/workflow?id=4c736e255f4a740f, https://usegalaxy.eu/published/workflow?id=519e0ffdfd1790bc, https://usegalaxy.eu/published/workflow?id=76a63b1710da5e60, https://usegalaxy.eu/published/workflow?id=a8d814a6d86e9661, https://usegalaxy.eu/published/workflow?id=c65d98740ca64104, https://usegalaxy.eu/published/workflow?id=d3ae8c51061330f3, https://usegalaxy.eu/published/workflow?id=d5780c37232e3181, https://usegalaxy.org.au/published/workflow?id=115151c2c8998d44, https://usegalaxy.org.au/published/workflow?id=178db14511c8f293, https://usegalaxy.org.au/published/workflow?id=1f63ec596e578b1c, https://usegalaxy.org.au/published/workflow?id=2afeae1ec03c0b57, https://usegalaxy.org.au/published/workflow?id=43f2dabbc1932e30, https://usegalaxy.org.au/published/workflow?id=47cacc06d404a8c6, https://usegalaxy.org.au/published/workflow?id=5d6773ed5b2f41cb, https://usegalaxy.org.au/published/workflow?id=8fe84de499e96485, https://usegalaxy.org.au/published/workflow?id=bd251174d94cde9d, https://usegalaxy.org.au/published/workflow?id=dd6f465ab1eb10b0, https://usegalaxy.org.au/published/workflow?id=e08b04291839e79a, https://usegalaxy.org/published/workflow?id=20da2dcce0ae2ca2, https://usegalaxy.org/published/workflow?id=7a33bc2d0970b502, https://usegalaxy.org/published/workflow?id=cf2dbc29ca20ebee, https://usegalaxy.org/published/workflow?id=fe262214fba1cb8e |
sequence-analysis/quality-control |
|
fastqtofasta |
fastq_to_fasta_python |
FASTQ to FASTA converter |
2019-06-21 |
https://github.com/galaxyproject/sequence_utils |
1.1.5 |
galaxy_sequence_utils |
1.2.0 |
To update |
Fastq Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastqtofasta |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/galaxy_sequence_utils/fastqtofasta |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
3597 |
4063 |
239192 |
254835 |
5369 |
13829 |
139433 |
262778 |
759 |
759 |
20053 |
20053 |
3 |
3 |
3 |
3 |
537669 |
398681 |
18654 |
9728 |
https://usegalaxy.eu/published/workflow?id=04a4dcac3fd922c5, https://usegalaxy.eu/published/workflow?id=0609a4b1941d1a68, https://usegalaxy.eu/published/workflow?id=08f41680101a1a45, https://usegalaxy.eu/published/workflow?id=4d32b1b3ac0a7161, https://usegalaxy.eu/published/workflow?id=52cb9bacc26b013e, https://usegalaxy.eu/published/workflow?id=6d3ec4203b503810, https://usegalaxy.eu/published/workflow?id=76e9cd837ea5e7da, https://usegalaxy.eu/published/workflow?id=799b924edd3c401b, https://usegalaxy.eu/published/workflow?id=8f415b0c409f56f7, https://usegalaxy.eu/published/workflow?id=90f993a1b245eb68, https://usegalaxy.eu/published/workflow?id=9fddc44294236e8f, https://usegalaxy.eu/published/workflow?id=ab646c6ab6de7061, https://usegalaxy.eu/published/workflow?id=b681f7b677b23168, https://usegalaxy.eu/published/workflow?id=d6ff6be33b8bfe85, https://usegalaxy.eu/published/workflow?id=da19c0eaa757fa39, https://usegalaxy.eu/published/workflow?id=e299721eec23b557, https://usegalaxy.eu/published/workflow?id=e423c80058601e78, https://usegalaxy.org.au/published/workflow?id=5cd804644a34c8fd, https://usegalaxy.org/published/workflow?id=091896754bcc8ec1, https://usegalaxy.org/published/workflow?id=1708fdfd1d485434, https://usegalaxy.org/published/workflow?id=20b7ae4b517a80fd, https://usegalaxy.org/published/workflow?id=400c1d170f073279, https://usegalaxy.org/published/workflow?id=46f184a0e95f3c1c, https://usegalaxy.org/published/workflow?id=4b7e73bb7ac93c95, https://usegalaxy.org/published/workflow?id=5c7f3d73543da895, https://usegalaxy.org/published/workflow?id=5f878c4cc3bff68c, https://usegalaxy.org/published/workflow?id=63adc811e3ae529d, https://usegalaxy.org/published/workflow?id=6c7d320ad951f445, https://usegalaxy.org/published/workflow?id=81183f40d2f3e395, https://usegalaxy.org/published/workflow?id=8b7e03f09b0183d9, https://usegalaxy.org/published/workflow?id=93810012f2610de4, https://usegalaxy.org/published/workflow?id=a71fcbc60caae8b6, https://usegalaxy.org/published/workflow?id=afb67b4b9952f57d, https://usegalaxy.org/published/workflow?id=cfa9e6e722b086c8, https://usegalaxy.org/published/workflow?id=d860749fd34809d7, https://usegalaxy.org/published/workflow?id=e4f1cce653812a22, https://usegalaxy.org/published/workflow?id=eeffba361f12a22d, https://workflowhub.eu/workflows/1271?version=3, https://workflowhub.eu/workflows/1272?version=2, https://workflowhub.eu/workflows/403?version=9, https://workflowhub.eu/workflows/794?version=2 |
ecology/ENA_Biodiv_submission, galaxy-interface/ncbi-sarf |
|
fastspar |
fastspar, fastspar_pvalues, fastspar_reduce |
Tool for rapid and scalable correlation estimation for compositional data. |
2025-06-16 |
https://github.com/scwatts/fastspar/ |
1.0.0 |
fastspar |
1.0.0 |
Up-to-date |
Metagenomics, Statistics |
|
|
Metagenomics, Microbial ecology |
Metagenomics, Microbial ecology |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastspar |
FastSpar |
FastSpar |
FastSpar is a C++ implementation of the SparCC algorithm for fast correlation estimation from compositional count data such as microbiome OTU tables. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
fasttree |
fasttree |
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences - GVL |
2018-02-02 |
http://www.microbesonline.org/fasttree/ |
2.1.10 |
fasttree |
2.1.11 |
To update |
Phylogenetics |
Phylogenetic tree generation (from molecular sequences), Phylogenetic tree generation (maximum likelihood and Bayesian methods) |
|
Phylogenetics, Sequence analysis |
Phylogenetics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasttree |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/fasttree |
fasttree |
FastTree |
Infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1355 |
1398 |
72006 |
72254 |
2526 |
2527 |
28673 |
28676 |
700 |
815 |
7608 |
8265 |
45 |
45 |
304 |
304 |
109499 |
108591 |
4785 |
4626 |
https://dev.workflowhub.eu/workflows/1077?version=2, https://dev.workflowhub.eu/workflows/1296?version=2, https://dev.workflowhub.eu/workflows/40?version=1, https://dev.workflowhub.eu/workflows/43?version=1, https://usegalaxy.eu/published/workflow?id=36de05d50c703164, https://usegalaxy.eu/published/workflow?id=376119528377a3ae, https://usegalaxy.eu/published/workflow?id=9155ed0e7a6a7b60, https://usegalaxy.eu/published/workflow?id=974cc681d07ec788, https://usegalaxy.eu/published/workflow?id=c8bc4af6dd3b5d02, https://usegalaxy.eu/published/workflow?id=ce21961260fe4351, https://usegalaxy.eu/published/workflow?id=d07fe8b5a045c176, https://usegalaxy.eu/published/workflow?id=dc57118a95b10a80, https://usegalaxy.eu/published/workflow?id=e16e524c557d7928, https://usegalaxy.eu/published/workflow?id=e7f03b4bd9b3d6fd, https://usegalaxy.eu/published/workflow?id=f6a763951d815944, https://usegalaxy.fr/published/workflow?id=297b71156b297a73, https://usegalaxy.fr/published/workflow?id=c7be6e229a045fad, https://usegalaxy.org.au/published/workflow?id=42137e36791652bc, https://usegalaxy.org.au/published/workflow?id=a01c3004bcef9dd3, https://usegalaxy.org.au/published/workflow?id=b60922a253df6654, https://usegalaxy.org.au/published/workflow?id=d62b6717202f42c9, https://usegalaxy.org.au/published/workflow?id=eda40b58616a0fe4, https://usegalaxy.org/published/workflow?id=2d1ca299c1b058f6, https://usegalaxy.org/published/workflow?id=2d3063882d8239ff, https://usegalaxy.org/published/workflow?id=3d7baebefa7c9b81, https://usegalaxy.org/published/workflow?id=3ef08553982f6ffc, https://usegalaxy.org/published/workflow?id=87685c6247521b54, https://usegalaxy.org/published/workflow?id=b2fb90873471f4e7, https://usegalaxy.org/published/workflow?id=be54e57345ce7ca5, https://usegalaxy.org/published/workflow?id=be9bd7286d38c210, https://workflowhub.eu/workflows/1060?version=1, https://workflowhub.eu/workflows/1487?version=2, https://workflowhub.eu/workflows/1559?version=1 |
evolution/abc_intro_phylo, evolution/bacterial-comparative-genomics, microbiome/pathogen-detection-from-nanopore-foodborne-data |
|
fastx_artifacts_filter |
cshl_fastx_artifacts_filter |
Remove sequencing artifacts |
2017-07-10 |
http://hannonlab.cshl.edu/fastx_toolkit/ |
0.0.14 |
fastx_toolkit |
0.0.14 |
Up-to-date |
Fasta Manipulation, Fastq Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastx_artifacts_filter |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/fastx_toolkit/fastx_artifacts_filter |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
81 |
110 |
1763 |
2321 |
313 |
2445 |
5740 |
25714 |
29 |
52 |
665 |
1136 |
3 |
3 |
4 |
4 |
29175 |
8172 |
2610 |
426 |
https://usegalaxy.org/published/workflow?id=02d49c5f0d9aa010, https://usegalaxy.org/published/workflow?id=8356ee639055cbca, https://usegalaxy.org/published/workflow?id=947340358dd268ea, https://usegalaxy.org/published/workflow?id=9a1fb6ecff886358, https://usegalaxy.org/published/workflow?id=d89e626fa4f9434f |
|
|
fastx_barcode_splitter |
cshl_fastx_barcode_splitter |
Barcode Splitter |
2017-07-10 |
http://hannonlab.cshl.edu/fastx_toolkit/ |
0.0.14 |
fastx_toolkit |
0.0.14 |
Up-to-date |
Fasta Manipulation, Fastq Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastx_barcode_splitter |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/fastx_toolkit/fastx_barcode_splitter |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
228 |
272 |
21410 |
23181 |
917 |
2823 |
44990 |
99937 |
56 |
73 |
922 |
1104 |
16 |
16 |
47 |
47 |
124269 |
67369 |
3184 |
1217 |
https://usegalaxy.org/published/workflow?id=87b6bac79f99c1f8, https://usegalaxy.org/published/workflow?id=cd431e5f912d3616 |
|
|
fastx_clipper |
cshl_fastx_clipper |
Clip adapter sequences |
2017-07-10 |
http://hannonlab.cshl.edu/fastx_toolkit/ |
0.0.14 |
fastx_toolkit |
0.0.14 |
Up-to-date |
Fasta Manipulation, Fastq Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastx_clipper |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/fastx_toolkit/fastx_clipper |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
235 |
275 |
3477 |
3882 |
1159 |
6149 |
12928 |
118973 |
37 |
59 |
438 |
770 |
5 |
5 |
10 |
10 |
123635 |
16853 |
6488 |
1436 |
https://usegalaxy.org/published/workflow?id=29a80db9f3208c29, https://usegalaxy.org/published/workflow?id=344a79d4f12d2cff, https://usegalaxy.org/published/workflow?id=3767c9c07462b777, https://usegalaxy.org/published/workflow?id=77e4bb9d6aea0c9a, https://usegalaxy.org/published/workflow?id=85c3a1fc1d3d3df8, https://usegalaxy.org/published/workflow?id=b097fce5358c01e5, https://usegalaxy.org/published/workflow?id=b0a12221ce09c001, https://usegalaxy.org/published/workflow?id=b2176abeb937f026, https://usegalaxy.org/published/workflow?id=c64719e91e7346a2, https://usegalaxy.org/published/workflow?id=d69ea491b99016f4, https://usegalaxy.org/published/workflow?id=d860749fd34809d7, https://usegalaxy.org/published/workflow?id=d89e626fa4f9434f, https://usegalaxy.org/published/workflow?id=d8afd017905d6702, https://usegalaxy.org/published/workflow?id=e6838c861b6beaed |
|
|
fastx_collapser |
cshl_fastx_collapser |
Collapse sequences |
2017-07-10 |
http://hannonlab.cshl.edu/fastx_toolkit/ |
0.0.14 |
fastx_toolkit |
0.0.14 |
Up-to-date |
Fasta Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastx_collapser |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/fastx_toolkit/fastx_collapser |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
340 |
381 |
69364 |
81050 |
821 |
3165 |
77689 |
193356 |
59 |
83 |
23148 |
23755 |
41 |
42 |
218 |
228 |
298389 |
170419 |
3671 |
1261 |
https://usegalaxy.org/published/workflow?id=091896754bcc8ec1, https://usegalaxy.org/published/workflow?id=1708fdfd1d485434, https://usegalaxy.org/published/workflow?id=1a6f552cfe798883, https://usegalaxy.org/published/workflow?id=23bca854e549ad48, https://usegalaxy.org/published/workflow?id=2823322fa85c7ae1, https://usegalaxy.org/published/workflow?id=2d1d69aac67a387a, https://usegalaxy.org/published/workflow?id=2e92cca68b7979f6, https://usegalaxy.org/published/workflow?id=49ca77212cc56ef9, https://usegalaxy.org/published/workflow?id=52cc435f50a6ff29, https://usegalaxy.org/published/workflow?id=52e099f693639115, https://usegalaxy.org/published/workflow?id=5e079a9ac49a5b8c, https://usegalaxy.org/published/workflow?id=66bc5f6d71466b7f, https://usegalaxy.org/published/workflow?id=74fe080f24f7da84, https://usegalaxy.org/published/workflow?id=80afe572b6693ca1, https://usegalaxy.org/published/workflow?id=98286b6154e1b57f, https://usegalaxy.org/published/workflow?id=9efb061a87bc9f4d, https://usegalaxy.org/published/workflow?id=b097fce5358c01e5, https://usegalaxy.org/published/workflow?id=bb8609e8d2d4bd89, https://usegalaxy.org/published/workflow?id=c74a01ba2f2a80d3, https://usegalaxy.org/published/workflow?id=de9c2db125a5ea27, https://usegalaxy.org/published/workflow?id=e4f1cce653812a22 |
|
|
fastx_nucleotides_distribution |
cshl_fastx_nucleotides_distribution |
Draw nucleotides distribution chart |
2017-07-10 |
http://hannonlab.cshl.edu/fastx_toolkit/ |
0.0.14 |
fastx_toolkit |
0.0.14 |
Up-to-date |
Fastq Manipulation, Graphics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastx_nucleotides_distribution |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/fastx_toolkit/fastx_nucleotides_distribution |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
55 |
93 |
156 |
274 |
1126 |
4338 |
4355 |
25604 |
72 |
98 |
1076 |
1214 |
9 |
9 |
11 |
11 |
27103 |
5598 |
4538 |
1262 |
https://usegalaxy.org/published/workflow?id=3767c9c07462b777, https://usegalaxy.org/published/workflow?id=3c32ad1a07a66843, https://usegalaxy.org/published/workflow?id=8ea5aaa1cc088077, https://usegalaxy.org/published/workflow?id=b7e20495b47d5b97, https://usegalaxy.org/published/workflow?id=c29b08d56223c274 |
|
|
fastx_quality_statistics |
cshl_fastx_quality_statistics |
Compute quality statistics |
2018-04-24 |
http://hannonlab.cshl.edu/fastx_toolkit/ |
0.0.14 |
fastx_toolkit |
0.0.14 |
Up-to-date |
Fastq Manipulation, Statistics |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastx_quality_statistics |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/fastx_toolkit/fastx_quality_statistics |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
158 |
214 |
2192 |
2360 |
4015 |
10466 |
23935 |
65308 |
251 |
288 |
2823 |
3288 |
5 |
5 |
65 |
65 |
71021 |
29015 |
10973 |
4429 |
https://usegalaxy.org/published/workflow?id=3767c9c07462b777, https://usegalaxy.org/published/workflow?id=3c32ad1a07a66843, https://usegalaxy.org/published/workflow?id=4a9b0534b1c88609, https://usegalaxy.org/published/workflow?id=6ad3c2d8a14809ca, https://usegalaxy.org/published/workflow?id=7251c6e0dad8f927, https://usegalaxy.org/published/workflow?id=8ea5aaa1cc088077, https://usegalaxy.org/published/workflow?id=b7e20495b47d5b97, https://usegalaxy.org/published/workflow?id=c29b08d56223c274 |
|
|
fastx_renamer |
cshl_fastx_renamer |
Rename sequences |
2017-07-10 |
http://hannonlab.cshl.edu/fastx_toolkit/ |
0.0.14 |
fastx_toolkit |
0.0.14 |
Up-to-date |
Fasta Manipulation, Fastq Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastx_renamer |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/fastx_toolkit/fastx_renamer |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
195 |
236 |
3328 |
3708 |
289 |
1045 |
9173 |
14497 |
51 |
69 |
495 |
787 |
11 |
11 |
629 |
629 |
19621 |
13625 |
1361 |
546 |
https://usegalaxy.eu/published/workflow?id=08cfb9b21c1ec808, https://usegalaxy.eu/published/workflow?id=d4b3da4cc5a50044, https://usegalaxy.org/published/workflow?id=1a6f552cfe798883, https://usegalaxy.org/published/workflow?id=23bca854e549ad48, https://usegalaxy.org/published/workflow?id=24ada8b98b04fedc, https://usegalaxy.org/published/workflow?id=2823322fa85c7ae1, https://usegalaxy.org/published/workflow?id=2d1d69aac67a387a, https://usegalaxy.org/published/workflow?id=2e92cca68b7979f6, https://usegalaxy.org/published/workflow?id=49ca77212cc56ef9, https://usegalaxy.org/published/workflow?id=52cc435f50a6ff29, https://usegalaxy.org/published/workflow?id=52e099f693639115, https://usegalaxy.org/published/workflow?id=5e079a9ac49a5b8c, https://usegalaxy.org/published/workflow?id=66bc5f6d71466b7f, https://usegalaxy.org/published/workflow?id=74fe080f24f7da84, https://usegalaxy.org/published/workflow?id=80afe572b6693ca1, https://usegalaxy.org/published/workflow?id=b097fce5358c01e5, https://usegalaxy.org/published/workflow?id=bb8609e8d2d4bd89, https://usegalaxy.org/published/workflow?id=c74a01ba2f2a80d3 |
|
|
fastx_reverse_complement |
cshl_fastx_reverse_complement |
Reverse-Complement |
2017-07-10 |
http://hannonlab.cshl.edu/fastx_toolkit/ |
0.0.14 |
fastx_toolkit |
0.0.14 |
Up-to-date |
Fastq Manipulation, Fasta Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastx_reverse_complement |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/fastx_toolkit/fastx_reverse_complement |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
381 |
457 |
11861 |
14038 |
588 |
1596 |
18069 |
68766 |
70 |
89 |
738 |
928 |
18 |
18 |
3514 |
3514 |
87246 |
34182 |
2160 |
1057 |
https://dev.workflowhub.eu/workflows/1287?version=2, https://dev.workflowhub.eu/workflows/1292?version=2, https://usegalaxy.eu/published/workflow?id=6d3ec4203b503810, https://usegalaxy.eu/published/workflow?id=e299721eec23b557, https://usegalaxy.fr/published/workflow?id=41264142d3c00016, https://usegalaxy.fr/published/workflow?id=8b1678200a1d157a, https://usegalaxy.org/published/workflow?id=24ada8b98b04fedc, https://usegalaxy.org/published/workflow?id=4b7e73bb7ac93c95, https://usegalaxy.org/published/workflow?id=58a7a02dade085cf, https://usegalaxy.org/published/workflow?id=b18a41e364650fee, https://usegalaxy.org/published/workflow?id=e1dcdc125122f561, https://workflowhub.eu/workflows/1630?version=1, https://workflowhub.eu/workflows/1635?version=1 |
sequence-analysis/Manage_AB1_Sanger |
|
fastx_trimmer |
cshl_fastx_trimmer |
Trim sequences |
2017-07-10 |
http://hannonlab.cshl.edu/fastx_toolkit/ |
0.0.14 |
fastx_toolkit |
0.0.14 |
Up-to-date |
Fasta Manipulation, Fastq Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastx_trimmer |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/fastx_toolkit/fastx_trimmer |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
579 |
709 |
13907 |
15425 |
1830 |
8459 |
125452 |
213856 |
224 |
279 |
3212 |
5400 |
252 |
252 |
1645 |
1645 |
236326 |
144216 |
9699 |
2885 |
https://usegalaxy.eu/published/workflow?id=4643edf74f3eaec3, https://usegalaxy.eu/published/workflow?id=8f747dbff3216993, https://usegalaxy.eu/published/workflow?id=987a2abb5cd56e57, https://usegalaxy.eu/published/workflow?id=e14b81a8c0b1b7a4, https://usegalaxy.org/published/workflow?id=5641d1cbe795203f, https://usegalaxy.org/published/workflow?id=b097fce5358c01e5, https://usegalaxy.org/published/workflow?id=b2176abeb937f026, https://usegalaxy.org/published/workflow?id=e6838c861b6beaed, https://usegalaxy.org/published/workflow?id=e7030b62a3335bd7 |
|
|
featurecounts |
featurecounts |
featureCounts counts the number of reads aligned to defined masked regions in a reference genome |
2016-02-09 |
https://subread.sourceforge.net/ |
2.1.1 |
subread |
2.1.1 |
Up-to-date |
RNA, Transcriptomics, Sequence Analysis |
Read summarisation, RNA-Seq quantification |
Read summarisation, RNA-Seq quantification |
RNA-Seq |
RNA-Seq |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/featurecounts |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/featurecounts |
featurecounts |
FeatureCounts |
featureCounts is a very efficient read quantifier. It can be used to summarize RNA-seq reads and gDNA-seq reads to a variety of genomic features such as genes, exons, promoters, gene bodies and genomic bins. It is included in the Bioconductor Rsubread package and also in the SourceForge Subread package. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
12867 |
14177 |
778663 |
819416 |
24978 |
30432 |
698749 |
877978 |
2478 |
2679 |
71903 |
75982 |
1332 |
1332 |
33406 |
33407 |
1806783 |
1582721 |
48620 |
41655 |
https://dev.workflowhub.eu/workflows/1001?version=1, https://dev.workflowhub.eu/workflows/1214?version=1, https://dev.workflowhub.eu/workflows/1295?version=1, https://dev.workflowhub.eu/workflows/1319?version=2, https://dev.workflowhub.eu/workflows/1327?version=1, https://dev.workflowhub.eu/workflows/1329?version=5, https://usegalaxy.eu/published/workflow?id=0229f3f3835c2d53, https://usegalaxy.eu/published/workflow?id=08cfb9b21c1ec808, https://usegalaxy.eu/published/workflow?id=0de150b19102cb7e, https://usegalaxy.eu/published/workflow?id=135e8888872e8413, https://usegalaxy.eu/published/workflow?id=1502fd3fa90d32d8, https://usegalaxy.eu/published/workflow?id=17ad465d9515cd25, https://usegalaxy.eu/published/workflow?id=1842a61fe5f6965f, https://usegalaxy.eu/published/workflow?id=18c9095fbf5c4517, https://usegalaxy.eu/published/workflow?id=1b49eda539658e53, https://usegalaxy.eu/published/workflow?id=1bc7b5eabea972fd, https://usegalaxy.eu/published/workflow?id=1be0c4adf13cf368, https://usegalaxy.eu/published/workflow?id=1ccc0c9e1c6821bb, https://usegalaxy.eu/published/workflow?id=1ee43d90b69829e9, https://usegalaxy.eu/published/workflow?id=1fe02012c96b731f, https://usegalaxy.eu/published/workflow?id=20ada53472782c9b, https://usegalaxy.eu/published/workflow?id=212c213f1d8e0154, https://usegalaxy.eu/published/workflow?id=2287afbf248d9c89, https://usegalaxy.eu/published/workflow?id=250e6058f160825f, https://usegalaxy.eu/published/workflow?id=26185e8fa5a9b988, https://usegalaxy.eu/published/workflow?id=29a855d928337f8f, https://usegalaxy.eu/published/workflow?id=2d08a73dd8ff99e9, https://usegalaxy.eu/published/workflow?id=2d64d6571e01809d, https://usegalaxy.eu/published/workflow?id=300301c23327f797, https://usegalaxy.eu/published/workflow?id=318be2b30bf7884c, https://usegalaxy.eu/published/workflow?id=31d9eb6a120411d6, https://usegalaxy.eu/published/workflow?id=3550384e7c062a60, https://usegalaxy.eu/published/workflow?id=39876e9c04aad543, https://usegalaxy.eu/published/workflow?id=3d5b39e454df584b, https://usegalaxy.eu/published/workflow?id=443ea80b36d862f5, https://usegalaxy.eu/published/workflow?id=4566262dd0acc8ab, https://usegalaxy.eu/published/workflow?id=487929c7b5be8dc3, https://usegalaxy.eu/published/workflow?id=49073a24429d93d6, https://usegalaxy.eu/published/workflow?id=4dd7f6e1c1e7f96a, https://usegalaxy.eu/published/workflow?id=4e215c9b50650d5d, https://usegalaxy.eu/published/workflow?id=50758631a0e81a7a, https://usegalaxy.eu/published/workflow?id=52cafb62f5bf6e25, https://usegalaxy.eu/published/workflow?id=534b81d48df6b507, https://usegalaxy.eu/published/workflow?id=535f777e5e42e98c, https://usegalaxy.eu/published/workflow?id=54467870b7c635f2, https://usegalaxy.eu/published/workflow?id=56868483be18f1a1, https://usegalaxy.eu/published/workflow?id=5aba0f20d994b1a4, https://usegalaxy.eu/published/workflow?id=5b00ef046439d757, https://usegalaxy.eu/published/workflow?id=5c8186f1e342c522, https://usegalaxy.eu/published/workflow?id=60a45de522b8b695, https://usegalaxy.eu/published/workflow?id=60e4d0db3164f037, https://usegalaxy.eu/published/workflow?id=61e592bafd9d2b58, https://usegalaxy.eu/published/workflow?id=625aafb9cf16b03f, https://usegalaxy.eu/published/workflow?id=63478edcea3f449a, https://usegalaxy.eu/published/workflow?id=63749bd3045ccd4a, https://usegalaxy.eu/published/workflow?id=63964ba7d9edce74, https://usegalaxy.eu/published/workflow?id=68e8042f11d5a3fd, https://usegalaxy.eu/published/workflow?id=71a9224fa6f3da9d, https://usegalaxy.eu/published/workflow?id=733650962d379da2, https://usegalaxy.eu/published/workflow?id=762c64a9f588a420, https://usegalaxy.eu/published/workflow?id=766ebba7a2aee494, https://usegalaxy.eu/published/workflow?id=7baae0775071c7ec, https://usegalaxy.eu/published/workflow?id=7c9b182da21748c7, https://usegalaxy.eu/published/workflow?id=87fea062a9646a31, https://usegalaxy.eu/published/workflow?id=88b382a6f56a6329, https://usegalaxy.eu/published/workflow?id=8b1e2fe9f4a07de0, https://usegalaxy.eu/published/workflow?id=910570a2caafe462, https://usegalaxy.eu/published/workflow?id=9141c6449595c6a1, https://usegalaxy.eu/published/workflow?id=927d24dcde139b9c, https://usegalaxy.eu/published/workflow?id=94bbf8fa7c1f030d, https://usegalaxy.eu/published/workflow?id=96c61a584cb2e5e9, https://usegalaxy.eu/published/workflow?id=985044b4b2c51425, https://usegalaxy.eu/published/workflow?id=98d4adf5774e274e, https://usegalaxy.eu/published/workflow?id=9a1d17c12b139bda, https://usegalaxy.eu/published/workflow?id=9a52516ec0b539ea, https://usegalaxy.eu/published/workflow?id=9c7a218993788493, https://usegalaxy.eu/published/workflow?id=9e01e24c5e749365, https://usegalaxy.eu/published/workflow?id=9e31c51911987687, https://usegalaxy.eu/published/workflow?id=a28c207730e7e13d, https://usegalaxy.eu/published/workflow?id=a35e0c2fcba4e95f, https://usegalaxy.eu/published/workflow?id=a461ea397418f3aa, https://usegalaxy.eu/published/workflow?id=a6c666f3028ea440, https://usegalaxy.eu/published/workflow?id=a72d2667a53830f7, https://usegalaxy.eu/published/workflow?id=ab6e6ffaaebab45b, https://usegalaxy.eu/published/workflow?id=ab8924d78fa5ef8f, https://usegalaxy.eu/published/workflow?id=ae1ca223d6667070, https://usegalaxy.eu/published/workflow?id=af7c349497a75314, https://usegalaxy.eu/published/workflow?id=aff44f1665a14e23, https://usegalaxy.eu/published/workflow?id=b41ff6d8fb5a0878, https://usegalaxy.eu/published/workflow?id=b426e137396acb14, https://usegalaxy.eu/published/workflow?id=b801e745205892f5, https://usegalaxy.eu/published/workflow?id=b86f3775aa1f13bc, https://usegalaxy.eu/published/workflow?id=bbe2a1615c8faaae, https://usegalaxy.eu/published/workflow?id=bc79a9f797334b01, https://usegalaxy.eu/published/workflow?id=bcb8a8c5bff790ab, https://usegalaxy.eu/published/workflow?id=bfb762c96328e3c1, https://usegalaxy.eu/published/workflow?id=c5e6047b3b256b06, https://usegalaxy.eu/published/workflow?id=c64b219b4031fabd, https://usegalaxy.eu/published/workflow?id=c6b22fc33b569c8f, https://usegalaxy.eu/published/workflow?id=c885eaabae612d6d, https://usegalaxy.eu/published/workflow?id=ca9d3233b0912765, https://usegalaxy.eu/published/workflow?id=cae527ce845e770e, https://usegalaxy.eu/published/workflow?id=cbc16cb5db98ab21, https://usegalaxy.eu/published/workflow?id=cc37667c2d1f9056, https://usegalaxy.eu/published/workflow?id=ccef778cfd9024d1, https://usegalaxy.eu/published/workflow?id=d1338e2b4002a364, https://usegalaxy.eu/published/workflow?id=d3dfe7ba11508c72, https://usegalaxy.eu/published/workflow?id=d41b52a15ba56f54, https://usegalaxy.eu/published/workflow?id=d4b3da4cc5a50044, https://usegalaxy.eu/published/workflow?id=d503dee6f9b35a18, https://usegalaxy.eu/published/workflow?id=d5333903ba947adf, https://usegalaxy.eu/published/workflow?id=d72edb9f8c529f47, https://usegalaxy.eu/published/workflow?id=d9f8c5d575da02b1, https://usegalaxy.eu/published/workflow?id=daf47855afa73de8, https://usegalaxy.eu/published/workflow?id=dbcf7af09e036754, https://usegalaxy.eu/published/workflow?id=de3eafbcf42c75bb, https://usegalaxy.eu/published/workflow?id=deec04097a871646, https://usegalaxy.eu/published/workflow?id=df3bf1700d3faefc, https://usegalaxy.eu/published/workflow?id=e62b659a5da9734e, https://usegalaxy.eu/published/workflow?id=e6c5fb1d37d29ec0, https://usegalaxy.eu/published/workflow?id=e8202b7b6338005d, https://usegalaxy.eu/published/workflow?id=e85c9385870aadcc, https://usegalaxy.eu/published/workflow?id=e94e307375a92c94, https://usegalaxy.eu/published/workflow?id=eb8168bc01249596, https://usegalaxy.eu/published/workflow?id=ecab5b2c3ff3df9d, https://usegalaxy.eu/published/workflow?id=f026c4b8341ff94c, https://usegalaxy.eu/published/workflow?id=f0ac222d3e965ab0, https://usegalaxy.eu/published/workflow?id=f12fb4a95954c448, https://usegalaxy.eu/published/workflow?id=f841e1207611f28f, https://usegalaxy.eu/published/workflow?id=fb18c5d14acb1b36, https://usegalaxy.eu/published/workflow?id=fe8a1a970fd0d4cd, https://usegalaxy.fr/published/workflow?id=0f6714dbdb90b6aa, https://usegalaxy.fr/published/workflow?id=5d83e0886f2a7465, https://usegalaxy.fr/published/workflow?id=5e49933a687c2b46, https://usegalaxy.fr/published/workflow?id=6d2945d35fa956c8, https://usegalaxy.fr/published/workflow?id=72b531d980acaa6c, https://usegalaxy.fr/published/workflow?id=826cffb2458e4067, https://usegalaxy.fr/published/workflow?id=e0bad0b97ee71577, https://usegalaxy.org.au/published/workflow?id=000cdc969e9f0886, https://usegalaxy.org.au/published/workflow?id=01997cb92a2ce2d5, https://usegalaxy.org.au/published/workflow?id=02b8d033d9b1fa05, https://usegalaxy.org.au/published/workflow?id=046a1c600a6b77c2, https://usegalaxy.org.au/published/workflow?id=05950987aa2eba5b, https://usegalaxy.org.au/published/workflow?id=05b17b9d70c1db8b, https://usegalaxy.org.au/published/workflow?id=0614f24ebeb680de, https://usegalaxy.org.au/published/workflow?id=068f85b8b137bfd7, https://usegalaxy.org.au/published/workflow?id=07c97b9e59c0218f, https://usegalaxy.org.au/published/workflow?id=0c567180448d8774, https://usegalaxy.org.au/published/workflow?id=0cfc1408fd9ea4e7, https://usegalaxy.org.au/published/workflow?id=0d1db28665d19bda, https://usegalaxy.org.au/published/workflow?id=0fc7c14c4d1ac8f5, https://usegalaxy.org.au/published/workflow?id=10acf4f497172400, https://usegalaxy.org.au/published/workflow?id=114fb9589bb9db92, https://usegalaxy.org.au/published/workflow?id=14184bc2580a131f, https://usegalaxy.org.au/published/workflow?id=16f4846b4d6bc155, https://usegalaxy.org.au/published/workflow?id=19315e6573c58239, https://usegalaxy.org.au/published/workflow?id=1ab66d382630afa7, https://usegalaxy.org.au/published/workflow?id=1ad81f95ace878ea, https://usegalaxy.org.au/published/workflow?id=1c886f008a36b0b8, https://usegalaxy.org.au/published/workflow?id=20e5e6b233ffb951, https://usegalaxy.org.au/published/workflow?id=210ca013cc1cf185, https://usegalaxy.org.au/published/workflow?id=25ac9b4f2e39af97, https://usegalaxy.org.au/published/workflow?id=2999a1891ffe201b, https://usegalaxy.org.au/published/workflow?id=2a0046582f5f15a1, https://usegalaxy.org.au/published/workflow?id=2c58509f80897972, https://usegalaxy.org.au/published/workflow?id=2cef9a1633e0a067, https://usegalaxy.org.au/published/workflow?id=2f7c0e3221cbca2f, https://usegalaxy.org.au/published/workflow?id=301fdb29c513ffbe, https://usegalaxy.org.au/published/workflow?id=30b2cd025e0300da, https://usegalaxy.org.au/published/workflow?id=31449596b22f81f4, https://usegalaxy.org.au/published/workflow?id=35384818ee1cbac2, https://usegalaxy.org.au/published/workflow?id=374311292d72c9f9, https://usegalaxy.org.au/published/workflow?id=383ce49fa7a367e9, https://usegalaxy.org.au/published/workflow?id=39d56981a6854d82, https://usegalaxy.org.au/published/workflow?id=3bc45aaed5da1058, https://usegalaxy.org.au/published/workflow?id=3c727d5cd349a846, https://usegalaxy.org.au/published/workflow?id=3ce9dc804780e4a1, https://usegalaxy.org.au/published/workflow?id=3ef07022656067b1, https://usegalaxy.org.au/published/workflow?id=410d0d19b6589c78, https://usegalaxy.org.au/published/workflow?id=421adea2f259ec26, https://usegalaxy.org.au/published/workflow?id=42305ed876d19d08, https://usegalaxy.org.au/published/workflow?id=45c8789533c45abf, https://usegalaxy.org.au/published/workflow?id=49b5c35b9723fa62, https://usegalaxy.org.au/published/workflow?id=4e096a68187ce652, https://usegalaxy.org.au/published/workflow?id=4efed79608f85604, https://usegalaxy.org.au/published/workflow?id=4f2818b6620037af, https://usegalaxy.org.au/published/workflow?id=4f562265cbb14cd6, https://usegalaxy.org.au/published/workflow?id=525612313de7591e, https://usegalaxy.org.au/published/workflow?id=53010c2f1f207429, https://usegalaxy.org.au/published/workflow?id=5314a7a4732a0ef1, https://usegalaxy.org.au/published/workflow?id=544cb12a16f283b8, https://usegalaxy.org.au/published/workflow?id=56599572e0364e2a, https://usegalaxy.org.au/published/workflow?id=5a4e49ef8693d7c4, https://usegalaxy.org.au/published/workflow?id=5be983b903469f07, https://usegalaxy.org.au/published/workflow?id=5cbee52cf03b6f9a, https://usegalaxy.org.au/published/workflow?id=5ce00d3eab862f4e, https://usegalaxy.org.au/published/workflow?id=5ea74382fb77eb10, https://usegalaxy.org.au/published/workflow?id=608f3ad8f485e7a8, https://usegalaxy.org.au/published/workflow?id=6204bbcfe56931eb, https://usegalaxy.org.au/published/workflow?id=625f3c52832b0591, https://usegalaxy.org.au/published/workflow?id=6448b82959076a29, https://usegalaxy.org.au/published/workflow?id=6469ade8f6f7c718, https://usegalaxy.org.au/published/workflow?id=66b5c7dd3e58193f, https://usegalaxy.org.au/published/workflow?id=67191ea9fe977e08, https://usegalaxy.org.au/published/workflow?id=677ef3322366c953, https://usegalaxy.org.au/published/workflow?id=69233fb6edfcdde9, https://usegalaxy.org.au/published/workflow?id=6b34c95a247d15e3, https://usegalaxy.org.au/published/workflow?id=6cdbcd1f667d0f16, https://usegalaxy.org.au/published/workflow?id=6f0801fecbba5d3f, https://usegalaxy.org.au/published/workflow?id=71bad95f72c9f30d, https://usegalaxy.org.au/published/workflow?id=723513b09d6690b8, https://usegalaxy.org.au/published/workflow?id=73ff1aa9acc0ad2a, https://usegalaxy.org.au/published/workflow?id=74186b006665daf8, https://usegalaxy.org.au/published/workflow?id=749d8f2d26e0a111, https://usegalaxy.org.au/published/workflow?id=75113a1b41904d2a, https://usegalaxy.org.au/published/workflow?id=76323f103844f75b, https://usegalaxy.org.au/published/workflow?id=79522a1f7b0c53cb, https://usegalaxy.org.au/published/workflow?id=7ad277dd448e57b3, https://usegalaxy.org.au/published/workflow?id=7ae06a27188b9438, https://usegalaxy.org.au/published/workflow?id=7becafd394472dfb, https://usegalaxy.org.au/published/workflow?id=7c22d726e1716f4b, https://usegalaxy.org.au/published/workflow?id=7c866ed4a3552d0d, https://usegalaxy.org.au/published/workflow?id=7cd1acb1da823cdc, https://usegalaxy.org.au/published/workflow?id=7ea616c652d08fb6, https://usegalaxy.org.au/published/workflow?id=7ef245f5ae3b916d, https://usegalaxy.org.au/published/workflow?id=7febc6ac6f106e57, https://usegalaxy.org.au/published/workflow?id=811bbada546850bd, https://usegalaxy.org.au/published/workflow?id=83680c1c6dffb05b, https://usegalaxy.org.au/published/workflow?id=83a535840b388980, https://usegalaxy.org.au/published/workflow?id=8483ae422665a6c1, https://usegalaxy.org.au/published/workflow?id=8483e8d3e8d0ddc9, https://usegalaxy.org.au/published/workflow?id=8597166abda0a375, https://usegalaxy.org.au/published/workflow?id=85aede91db0122e4, https://usegalaxy.org.au/published/workflow?id=863eee1b041b6c58, https://usegalaxy.org.au/published/workflow?id=879d4fb110a61f7a, https://usegalaxy.org.au/published/workflow?id=88c0d875eea2ee49, https://usegalaxy.org.au/published/workflow?id=897dfa78c3b25356, https://usegalaxy.org.au/published/workflow?id=897e9d7432d231e9, https://usegalaxy.org.au/published/workflow?id=8b8a5b50f2edc72c, https://usegalaxy.org.au/published/workflow?id=8c40b4a911517cc5, https://usegalaxy.org.au/published/workflow?id=8cab31db0bd3ff52, https://usegalaxy.org.au/published/workflow?id=8d196c8c62530dc0, https://usegalaxy.org.au/published/workflow?id=8d6010d07cc2e170, https://usegalaxy.org.au/published/workflow?id=8fb691706f47527a, https://usegalaxy.org.au/published/workflow?id=9157a7438977b9e9, https://usegalaxy.org.au/published/workflow?id=91cfd96f697ba034, https://usegalaxy.org.au/published/workflow?id=925c167abd5610ae, https://usegalaxy.org.au/published/workflow?id=95a9070469a895c3, https://usegalaxy.org.au/published/workflow?id=95efb414f5984735, https://usegalaxy.org.au/published/workflow?id=975ddb0eb436f1fd, https://usegalaxy.org.au/published/workflow?id=97628b0604d5ec77, https://usegalaxy.org.au/published/workflow?id=978953f492b2b914, https://usegalaxy.org.au/published/workflow?id=981d7b02416b7734, https://usegalaxy.org.au/published/workflow?id=9898348d95033af2, https://usegalaxy.org.au/published/workflow?id=9988bc2402f32dc1, https://usegalaxy.org.au/published/workflow?id=9b1afa59c087eacd, https://usegalaxy.org.au/published/workflow?id=9df67170c9260539, https://usegalaxy.org.au/published/workflow?id=9e8d9b7055b7c863, https://usegalaxy.org.au/published/workflow?id=9ec9fe2715d7cfdc, https://usegalaxy.org.au/published/workflow?id=a1c59e9f5c7327d2, https://usegalaxy.org.au/published/workflow?id=a69db7f914c06407, https://usegalaxy.org.au/published/workflow?id=a7346c25dfdf2e3e, https://usegalaxy.org.au/published/workflow?id=a763e53653b10ce0, https://usegalaxy.org.au/published/workflow?id=a7726d18d2a5fcf2, https://usegalaxy.org.au/published/workflow?id=a7a30d970584f9ac, https://usegalaxy.org.au/published/workflow?id=a7d1cf2bb636e695, https://usegalaxy.org.au/published/workflow?id=a9fa6101f1fb13e2, https://usegalaxy.org.au/published/workflow?id=aa94c77b720a2810, https://usegalaxy.org.au/published/workflow?id=aaaf580eb00459b6, https://usegalaxy.org.au/published/workflow?id=aae07f802002fdd0, https://usegalaxy.org.au/published/workflow?id=ad13b4a61e8987b1, https://usegalaxy.org.au/published/workflow?id=ae5dca8108d1a8a6, https://usegalaxy.org.au/published/workflow?id=ae6892f1df022097, https://usegalaxy.org.au/published/workflow?id=ae773dfaa074cb72, https://usegalaxy.org.au/published/workflow?id=aed93da6fd6e4e13, https://usegalaxy.org.au/published/workflow?id=af3f40cba4d7afa6, https://usegalaxy.org.au/published/workflow?id=af7b95f46485308c, https://usegalaxy.org.au/published/workflow?id=af990cca72794142, https://usegalaxy.org.au/published/workflow?id=afd9a8bbc07f9c3f, https://usegalaxy.org.au/published/workflow?id=b03b577156e4db5b, https://usegalaxy.org.au/published/workflow?id=b517cabb697491a0, https://usegalaxy.org.au/published/workflow?id=b57bf134896c30ea, https://usegalaxy.org.au/published/workflow?id=b6db525b1b73394b, https://usegalaxy.org.au/published/workflow?id=b8c661ff6b79383b, https://usegalaxy.org.au/published/workflow?id=bda98c5a0ea70dd0, https://usegalaxy.org.au/published/workflow?id=c1a0a3888d9ee3ac, https://usegalaxy.org.au/published/workflow?id=c296b3848708f6f1, https://usegalaxy.org.au/published/workflow?id=c2e5a43356042b30, https://usegalaxy.org.au/published/workflow?id=c3b3717502ff6f76, https://usegalaxy.org.au/published/workflow?id=c3bb21f20a3ce689, https://usegalaxy.org.au/published/workflow?id=c3e198bc2146b4ad, https://usegalaxy.org.au/published/workflow?id=c65a5af6c0383f8c, https://usegalaxy.org.au/published/workflow?id=c8d18e2c03dca796, https://usegalaxy.org.au/published/workflow?id=cb960edf95d2dc35, https://usegalaxy.org.au/published/workflow?id=ccfae75390038ced, https://usegalaxy.org.au/published/workflow?id=ce7f6a1c824920e2, https://usegalaxy.org.au/published/workflow?id=cef4a514f35576e5, https://usegalaxy.org.au/published/workflow?id=cef68481b305a516, https://usegalaxy.org.au/published/workflow?id=d126940d33e63036, https://usegalaxy.org.au/published/workflow?id=d5ecfdbc04b24227, https://usegalaxy.org.au/published/workflow?id=d7a65f577fe5f16b, https://usegalaxy.org.au/published/workflow?id=db0bc7357c181222, https://usegalaxy.org.au/published/workflow?id=db3370a412c4de78, https://usegalaxy.org.au/published/workflow?id=dce29c35dfac48b1, https://usegalaxy.org.au/published/workflow?id=de1c04a2caf70647, https://usegalaxy.org.au/published/workflow?id=e08ef6b519f5fba0, https://usegalaxy.org.au/published/workflow?id=e1fd89e7248b6661, https://usegalaxy.org.au/published/workflow?id=e3cda847fe727b61, https://usegalaxy.org.au/published/workflow?id=e4ddf33ee5b5e259, https://usegalaxy.org.au/published/workflow?id=e52a3479c8216291, https://usegalaxy.org.au/published/workflow?id=e62f743342851151, https://usegalaxy.org.au/published/workflow?id=e826584d78b69467, https://usegalaxy.org.au/published/workflow?id=e8d3651c07ce0bec, https://usegalaxy.org.au/published/workflow?id=eb3a4535204383fa, https://usegalaxy.org.au/published/workflow?id=ec79c2fab8eac15d, https://usegalaxy.org.au/published/workflow?id=ed2f72e3537e8a4a, https://usegalaxy.org.au/published/workflow?id=f0ced9a5d34b2aff, https://usegalaxy.org.au/published/workflow?id=f19d63d7c9a48160, https://usegalaxy.org.au/published/workflow?id=f268c181a47d0cab, https://usegalaxy.org.au/published/workflow?id=f5c0b0bc5e023e42, https://usegalaxy.org.au/published/workflow?id=f944f2d3fbd1f062, https://usegalaxy.org.au/published/workflow?id=fb644a9649f36f40, https://usegalaxy.org.au/published/workflow?id=fc64a77321752a3c, https://usegalaxy.org.au/published/workflow?id=fc6f8afdee980f0e, https://usegalaxy.org.au/published/workflow?id=fd477917a3d27f61, https://usegalaxy.org.au/published/workflow?id=fd8fb237f8dc24c3, https://usegalaxy.org.au/published/workflow?id=fe1de81a97578368, https://usegalaxy.org.au/published/workflow?id=fe893d72526eba71, https://usegalaxy.org.au/published/workflow?id=ff42213dda7d3e59, https://usegalaxy.org/published/workflow?id=00a501a1fada4104, https://usegalaxy.org/published/workflow?id=03a1cd225af6de69, https://usegalaxy.org/published/workflow?id=044c5ce43f2e1829, https://usegalaxy.org/published/workflow?id=0a009cf9e88171f1, https://usegalaxy.org/published/workflow?id=13460c791ca97689, https://usegalaxy.org/published/workflow?id=1dd60e57d1d00406, https://usegalaxy.org/published/workflow?id=2125db88b4a71c09, https://usegalaxy.org/published/workflow?id=2375a915a5b33b39, https://usegalaxy.org/published/workflow?id=271b97e5c00c4da4, https://usegalaxy.org/published/workflow?id=2a7fbfc1c17e38bc, https://usegalaxy.org/published/workflow?id=2c36a7ab1979ee8a, https://usegalaxy.org/published/workflow?id=30883502ec515fe2, https://usegalaxy.org/published/workflow?id=3ad9cdcda44b7dfb, https://usegalaxy.org/published/workflow?id=4061e061f659449b, https://usegalaxy.org/published/workflow?id=413d7e5aa7378cf1, https://usegalaxy.org/published/workflow?id=41c09a87c6cd5f75, https://usegalaxy.org/published/workflow?id=42bc3a770f0ab6b8, https://usegalaxy.org/published/workflow?id=48adcc44fe62a99c, https://usegalaxy.org/published/workflow?id=4a50ce0e9f4d4bb8, https://usegalaxy.org/published/workflow?id=4e6005819e57ed35, https://usegalaxy.org/published/workflow?id=5336b9d26a083983, https://usegalaxy.org/published/workflow?id=544ce8ff6c9f6d4c, https://usegalaxy.org/published/workflow?id=5497e8630ebfeb42, https://usegalaxy.org/published/workflow?id=582f3de3971fc38c, https://usegalaxy.org/published/workflow?id=5944c5effd56b0d6, https://usegalaxy.org/published/workflow?id=5a272f266a1fa4ac, https://usegalaxy.org/published/workflow?id=63d590e8567f7157, https://usegalaxy.org/published/workflow?id=7022c4d9af725e5c, https://usegalaxy.org/published/workflow?id=73d98e5f821a78b3, https://usegalaxy.org/published/workflow?id=75f14618020c922a, https://usegalaxy.org/published/workflow?id=7a203cf1678df56d, https://usegalaxy.org/published/workflow?id=7a26069c2939bef9, https://usegalaxy.org/published/workflow?id=7b19452fe35b8b17, https://usegalaxy.org/published/workflow?id=7e81153760fb4c90, https://usegalaxy.org/published/workflow?id=812bc1b7a52f4f6f, https://usegalaxy.org/published/workflow?id=82681bd5f059e39a, https://usegalaxy.org/published/workflow?id=8700f593a3d642f5, https://usegalaxy.org/published/workflow?id=8bcab83874cbc75c, https://usegalaxy.org/published/workflow?id=8ebcae16a7822d93, https://usegalaxy.org/published/workflow?id=93bfbd7db42db543, https://usegalaxy.org/published/workflow?id=9bace540b35b1e61, https://usegalaxy.org/published/workflow?id=9c022f4028de0bc6, https://usegalaxy.org/published/workflow?id=9e74e3455e47c813, https://usegalaxy.org/published/workflow?id=a743746151101352, https://usegalaxy.org/published/workflow?id=ac8b74b911778fbc, https://usegalaxy.org/published/workflow?id=afebfed5df59dc18, https://usegalaxy.org/published/workflow?id=b2e81f82ccf3afd6, https://usegalaxy.org/published/workflow?id=bb2ac86b0440ae86, https://usegalaxy.org/published/workflow?id=bc83c42b44c4b03f, https://usegalaxy.org/published/workflow?id=bdfb27e4ef7b6138, https://usegalaxy.org/published/workflow?id=c24cfddfc88a97a3, https://usegalaxy.org/published/workflow?id=cd431e5f912d3616, https://usegalaxy.org/published/workflow?id=cf3f0760611f22f9, https://usegalaxy.org/published/workflow?id=d761637d43ee0324, https://usegalaxy.org/published/workflow?id=d82db9c29b998f22, https://usegalaxy.org/published/workflow?id=d97a88a8f9061e25, https://usegalaxy.org/published/workflow?id=dab54002b3c0e351, https://usegalaxy.org/published/workflow?id=e04f443a8ceca0d2, https://usegalaxy.org/published/workflow?id=e22ea88bc0fdc146, https://usegalaxy.org/published/workflow?id=e33f6a058c5f57e5, https://usegalaxy.org/published/workflow?id=e55ca98817c1855e, https://usegalaxy.org/published/workflow?id=e5a01f746bc9e9b5, https://usegalaxy.org/published/workflow?id=eb01b539d17580c3, https://usegalaxy.org/published/workflow?id=eb4b32fcf4a9f64a, https://usegalaxy.org/published/workflow?id=f961fc46d4fddecc, https://usegalaxy.org/published/workflow?id=fb903de4aa4d5090, https://usegalaxy.org/published/workflow?id=fc09d17e0bce18f8, https://workflowhub.eu/workflows/1494?version=1, https://workflowhub.eu/workflows/1675?version=1, https://workflowhub.eu/workflows/1685?version=1, https://workflowhub.eu/workflows/1692?version=1, https://workflowhub.eu/workflows/1715?version=1, https://workflowhub.eu/workflows/338?version=1, https://workflowhub.eu/workflows/688?version=1 |
single-cell/scrna-preprocessing, transcriptomics/de-novo, transcriptomics/minerva-pathways, transcriptomics/ref-based, transcriptomics/rna-seq-reads-to-counts |
|
feelnc |
feelnc |
Galaxy wrapper for FEELnc |
2018-03-27 |
https://github.com/tderrien/FEELnc |
0.2.1 |
feelnc |
0.2 |
To update |
Sequence Analysis |
Annotation, Classification |
Annotation, Classification |
RNA-seq, Functional, regulatory and non-coding RNA |
Functional, regulatory and non-coding RNA |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/feelnc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/feelnc |
feelnc |
FEELnc |
A tool to annotate long non-coding RNAs from RNA-seq assembled transcripts. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
117 |
124 |
1461 |
1616 |
129 |
129 |
1116 |
1116 |
5 |
5 |
81 |
81 |
14 |
14 |
68 |
68 |
2881 |
2726 |
272 |
265 |
https://dev.workflowhub.eu/workflows/1141?version=1, https://workflowhub.eu/workflows/1324?version=1, https://workflowhub.eu/workflows/1484?version=1 |
genome-annotation/lncrna |
|
fermikit |
fermi2, fermikit_variants |
FermiKit is a de novo assembly based variant calling pipeline for deep Illumina resequencing data. |
2017-01-05 |
https://github.com/lh3/fermikit |
r193 |
fermi2 |
r193 |
Up-to-date |
Assembly, Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/fermikit |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/fermikit |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
fgsea |
fgsea |
Perform gene set testing using fgsea |
2018-10-19 |
https://bioconductor.org/packages/release/bioc/html/fgsea.html |
1.8.0+galaxy1 |
bioconductor-fgsea |
1.32.2 |
To update |
Visualization, Transcriptomics, Statistics, Single Cell |
Gene-set enrichment analysis |
Gene-set enrichment analysis |
Genetics |
Genetics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/fgsea |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/fgsea |
fgsea |
fgsea |
The package implements an algorithm for fast gene set enrichment analysis. Using the fast algorithm allows to make more permutations and get more fine grained p-values, which allows to use accurate stantard approaches to multiple hypothesis correction. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
603 |
672 |
6428 |
7619 |
1032 |
1032 |
22800 |
22805 |
117 |
121 |
945 |
970 |
8 |
8 |
74 |
74 |
31468 |
30247 |
1833 |
1760 |
https://dev.workflowhub.eu/workflows/1316?version=1, https://usegalaxy.eu/published/workflow?id=12bf85cdc8102bb5, https://usegalaxy.eu/published/workflow?id=63c91ea322cd2819, https://usegalaxy.eu/published/workflow?id=732fa536cdc70c96, https://usegalaxy.eu/published/workflow?id=73a9ab4f0f0b9907, https://usegalaxy.eu/published/workflow?id=9a83043d5e847318, https://usegalaxy.eu/published/workflow?id=c3a11e1ac1aa8383, https://usegalaxy.eu/published/workflow?id=e04be1ab5a16eb9f, https://usegalaxy.eu/published/workflow?id=fa83e26e05418370, https://usegalaxy.org.au/published/workflow?id=9f6e62f465589ca3, https://usegalaxy.org/published/workflow?id=68832752b883c226, https://workflowhub.eu/workflows/1699?version=1 |
transcriptomics/rna-seq-genes-to-pathways |
|
filtlong |
filtlong |
Filtlong - Filtering long reads by quality |
2018-09-14 |
https://github.com/rrwick/Filtlong |
0.3.0 |
filtlong |
0.3.0 |
Up-to-date |
Fastq Manipulation, Sequence Analysis |
Filtering, Sequencing quality control |
Filtering, Sequencing quality control |
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/filtlong |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/filtlong |
filtlong |
Filtlong |
Filtlong is a tool for filtering long reads by quality. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1727 |
1822 |
64393 |
65388 |
1012 |
1012 |
34007 |
34008 |
657 |
657 |
11502 |
11502 |
19 |
19 |
106 |
106 |
111004 |
110008 |
3510 |
3415 |
https://dev.workflowhub.eu/workflows/1178?version=1, https://usegalaxy.eu/published/workflow?id=30dc526dcfa500df, https://usegalaxy.eu/published/workflow?id=346b46e6316c6950, https://usegalaxy.eu/published/workflow?id=4ddbffe4b3fef275, https://usegalaxy.eu/published/workflow?id=5500de2961f7470c, https://usegalaxy.eu/published/workflow?id=5826e573b6f93762, https://usegalaxy.eu/published/workflow?id=83a1b8949d87e3da, https://usegalaxy.eu/published/workflow?id=86cf02cc0868d238, https://usegalaxy.eu/published/workflow?id=968f0ac2617aa524, https://usegalaxy.eu/published/workflow?id=a337bfb2eb1e583f, https://usegalaxy.eu/published/workflow?id=a84bac86ec183d46, https://usegalaxy.eu/published/workflow?id=ab646c6ab6de7061, https://usegalaxy.eu/published/workflow?id=bf48b0eb15e8ff75, https://usegalaxy.eu/published/workflow?id=c3bfedf33bb00069, https://usegalaxy.eu/published/workflow?id=c9ef2d2ce92e2dfb, https://usegalaxy.eu/published/workflow?id=ea485dbabc76488d, https://usegalaxy.eu/published/workflow?id=eb5ab8bc82569eee, https://usegalaxy.eu/published/workflow?id=ecf48fa50af560a0, https://usegalaxy.org.au/published/workflow?id=2e29b21cdec7d0cc, https://usegalaxy.org.au/published/workflow?id=35f39173f0ac9179, https://usegalaxy.org.au/published/workflow?id=4871f853090e8be8, https://usegalaxy.org.au/published/workflow?id=b7aa22291322e505, https://usegalaxy.org.au/published/workflow?id=c997a34b55425155, https://usegalaxy.org.au/published/workflow?id=d69a765cfc82a399, https://usegalaxy.org.au/published/workflow?id=fc664a96d8099652, https://usegalaxy.org/published/workflow?id=2ded909e7e3a9962, https://usegalaxy.org/published/workflow?id=48dafc35989f13b1, https://usegalaxy.org/published/workflow?id=547f86db467bf620, https://usegalaxy.org/published/workflow?id=7fc8b2398b6f093f, https://usegalaxy.org/published/workflow?id=c451e4dca9981ed0, https://usegalaxy.org/published/workflow?id=cc6ee582a6e5cae2, https://usegalaxy.org/published/workflow?id=e1dcdc125122f561, https://workflowhub.eu/workflows/1613?version=1, https://workflowhub.eu/workflows/51?version=1 |
assembly/mrsa-nanopore |
|
flair |
flair_collapse, flair_correct |
FLAIR (Full-Length Alternative Isoform analysis of RNA) for the correction, isoform definition, and alternative splicing analysis of noisy reads. |
2020-11-06 |
https://github.com/BrooksLabUCSC/flair |
1.5 |
flair |
2.2.0 |
To update |
Nanopore |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/flair |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/flair |
|
|
|
|
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
0 |
0 |
26 |
26 |
2009 |
2009 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2009 |
2009 |
26 |
26 |
https://usegalaxy.eu/published/workflow?id=d4a6fb334f5dd10e |
|
|
flash |
flash |
Fast Length Adjustment of SHort reads |
2017-09-25 |
https://ccb.jhu.edu/software/FLASH/ |
1.2.11 |
flash |
1.2.11 |
Up-to-date |
Assembly, Fastq Manipulation |
Read pre-processing, Sequence merging, Sequence assembly |
Read pre-processing, Sequence merging, Sequence assembly |
Sequencing, Sequence assembly |
Sequencing, Sequence assembly |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/flash |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/flash |
flash |
FLASH |
Identifies paired-end reads which overlap in the middle, converting them to single long reads |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
239 |
277 |
27283 |
27740 |
435 |
727 |
9297 |
15450 |
1 |
1 |
4 |
4 |
0 |
0 |
0 |
0 |
43194 |
36584 |
1005 |
675 |
https://usegalaxy.eu/published/workflow?id=4643edf74f3eaec3, https://usegalaxy.eu/published/workflow?id=987a2abb5cd56e57, https://workflowhub.eu/workflows/100?version=1 |
|
|
fraggenescan |
fraggenescan |
Tool for finding (fragmented) genes in short read |
2017-09-04 |
https://sourceforge.net/projects/fraggenescan/ |
|
fraggenescan |
1.32 |
To update |
Sequence Analysis |
Gene prediction |
Gene prediction |
Genetics, Sequence analysis |
Genetics, Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/fraggenescan/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/fraggenescan |
fraggenescan |
FragGeneScan |
Application for finding (fragmented) genes in short reads |
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
148 |
170 |
1242 |
1543 |
0 |
0 |
0 |
0 |
47 |
47 |
1117 |
1117 |
2 |
2 |
11 |
11 |
2671 |
2370 |
219 |
197 |
https://usegalaxy.eu/published/workflow?id=02631612a43a4d9b, https://usegalaxy.eu/published/workflow?id=3eaa913306c16146, https://usegalaxy.eu/published/workflow?id=401746888e8b3aa8, https://usegalaxy.eu/published/workflow?id=534f5fc25bc887ca, https://usegalaxy.eu/published/workflow?id=58955868b504c60d, https://usegalaxy.eu/published/workflow?id=6158c3b5fc12044e, https://usegalaxy.eu/published/workflow?id=6416cfdbd5273063, https://usegalaxy.eu/published/workflow?id=667bac8d7453e5f1, https://usegalaxy.eu/published/workflow?id=8c7958cb05fba814, https://usegalaxy.eu/published/workflow?id=8deb08d4f228e198, https://usegalaxy.eu/published/workflow?id=9382f9bbbdddb5ad, https://usegalaxy.eu/published/workflow?id=a8417c63e9e22afb, https://usegalaxy.eu/published/workflow?id=d4a95588e6e50893, https://usegalaxy.eu/published/workflow?id=d57d41e306241396 |
|
|
freebayes |
freebayes, bamleftalign |
Galaxy Freebayes Bayesian genetic variant detector tool |
2017-01-11 |
https://github.com/ekg/freebayes |
1.3.10 |
freebayes |
1.3.10 |
Up-to-date |
Variant Analysis |
Variant calling, Statistical calculation |
Variant calling, Statistical calculation |
Genomics, Genetic variation, Rare diseases |
Genomics, Genetic variation, Rare diseases |
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/freebayes |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/freebayes |
freebayes |
FreeBayes |
Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs, indels, multi-nucleotide polymorphisms, and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment. |
|
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
7681 |
8461 |
160042 |
184007 |
14627 |
24174 |
147934 |
268340 |
1983 |
2400 |
20735 |
24354 |
228 |
228 |
2784 |
2784 |
479485 |
331495 |
35263 |
24519 |
https://dev.workflowhub.eu/workflows/1042?version=1, https://dev.workflowhub.eu/workflows/1081?version=1, https://dev.workflowhub.eu/workflows/1089?version=1, https://dev.workflowhub.eu/workflows/1100?version=2, https://dev.workflowhub.eu/workflows/1104?version=1, https://dev.workflowhub.eu/workflows/1108?version=1, https://dev.workflowhub.eu/workflows/1114?version=1, https://dev.workflowhub.eu/workflows/1118?version=1, https://dev.workflowhub.eu/workflows/1201?version=2, https://dev.workflowhub.eu/workflows/1386?version=1, https://dev.workflowhub.eu/workflows/1398?version=1, https://dev.workflowhub.eu/workflows/144?version=1, https://dev.workflowhub.eu/workflows/195?version=2, https://usegalaxy.eu/published/workflow?id=07b440eec3ac7c2e, https://usegalaxy.eu/published/workflow?id=0f6a7bd5362e4a2b, https://usegalaxy.eu/published/workflow?id=17916f0229e3c868, https://usegalaxy.eu/published/workflow?id=21a39ac4c1becb31, https://usegalaxy.eu/published/workflow?id=220961d803697f54, https://usegalaxy.eu/published/workflow?id=291c36e1b18e9deb, https://usegalaxy.eu/published/workflow?id=2a13eb981d6ee36e, https://usegalaxy.eu/published/workflow?id=2aede5c6577b28f5, https://usegalaxy.eu/published/workflow?id=2c3d05023c02113e, https://usegalaxy.eu/published/workflow?id=2d9d4445a1871230, https://usegalaxy.eu/published/workflow?id=2f1ee01aeee2b9f0, https://usegalaxy.eu/published/workflow?id=35629b113a6f23ab, https://usegalaxy.eu/published/workflow?id=3570835f21365be7, https://usegalaxy.eu/published/workflow?id=36a4646959829018, https://usegalaxy.eu/published/workflow?id=39afbf843b5513bf, https://usegalaxy.eu/published/workflow?id=3a8150c81b90a3a7, https://usegalaxy.eu/published/workflow?id=3b7c0b64033f38ac, https://usegalaxy.eu/published/workflow?id=429ae28a178cd07c, https://usegalaxy.eu/published/workflow?id=4412f7223a557b48, https://usegalaxy.eu/published/workflow?id=45fc2dada84d251e, https://usegalaxy.eu/published/workflow?id=476db04368d5e90c, https://usegalaxy.eu/published/workflow?id=4a89ddab941c6819, https://usegalaxy.eu/published/workflow?id=4d97068a725c975c, https://usegalaxy.eu/published/workflow?id=4f62794453f65cba, https://usegalaxy.eu/published/workflow?id=529f30e894beacc2, https://usegalaxy.eu/published/workflow?id=533819bcb5aa78c5, https://usegalaxy.eu/published/workflow?id=591ebf913450f49e, https://usegalaxy.eu/published/workflow?id=5a16af00bf8bf57b, https://usegalaxy.eu/published/workflow?id=5e3c352233aa7a52, https://usegalaxy.eu/published/workflow?id=5ed38d8114bcd6f7, https://usegalaxy.eu/published/workflow?id=606a04c4aa95d010, https://usegalaxy.eu/published/workflow?id=61fe08fb3d5e83f8, https://usegalaxy.eu/published/workflow?id=6a5c39c1d38a10c2, https://usegalaxy.eu/published/workflow?id=6e6cf59bfeb938bf, https://usegalaxy.eu/published/workflow?id=6ed1016dfdf9f928, https://usegalaxy.eu/published/workflow?id=75e88603745e069e, https://usegalaxy.eu/published/workflow?id=7bdd9ad918edab0b, https://usegalaxy.eu/published/workflow?id=7cc253b53379b727, https://usegalaxy.eu/published/workflow?id=83049910e2cd5128, https://usegalaxy.eu/published/workflow?id=865f470be3c18b08, https://usegalaxy.eu/published/workflow?id=88064e2231165fd2, https://usegalaxy.eu/published/workflow?id=99022559adf01c4a, https://usegalaxy.eu/published/workflow?id=99799eec4497f977, https://usegalaxy.eu/published/workflow?id=a2d4221ad117c378, https://usegalaxy.eu/published/workflow?id=a2f36d4dd48d8ec2, https://usegalaxy.eu/published/workflow?id=a62f21701ff37788, https://usegalaxy.eu/published/workflow?id=a7638e7f908fd90d, https://usegalaxy.eu/published/workflow?id=ad609d1a3de251f5, https://usegalaxy.eu/published/workflow?id=af30010868c97316, https://usegalaxy.eu/published/workflow?id=b1d1694b95ed10e1, https://usegalaxy.eu/published/workflow?id=b3b094f1bdbaa04a, https://usegalaxy.eu/published/workflow?id=b82a4065be048ef6, https://usegalaxy.eu/published/workflow?id=b97532c398b821a2, https://usegalaxy.eu/published/workflow?id=c879060c00aab94f, https://usegalaxy.eu/published/workflow?id=cc37667c2d1f9056, https://usegalaxy.eu/published/workflow?id=ea0524e0b5eab8b9, https://usegalaxy.eu/published/workflow?id=f560e06d23818b4c, https://usegalaxy.eu/published/workflow?id=fa670d951fc4f778, https://usegalaxy.eu/published/workflow?id=fba10ba449498bb5, https://usegalaxy.eu/published/workflow?id=ff2fd4a4bb27d859, https://usegalaxy.eu/published/workflow?id=ffe93ec81afefd09, https://usegalaxy.fr/published/workflow?id=61235264d5d2f666, https://usegalaxy.fr/published/workflow?id=727cfdb7c79287d1, https://usegalaxy.fr/published/workflow?id=e3c04a30258421aa, https://usegalaxy.org.au/published/workflow?id=0c6f7bfc826433c4, https://usegalaxy.org.au/published/workflow?id=0ebaaecf61dfc921, https://usegalaxy.org.au/published/workflow?id=0f48060aa1bd41a5, https://usegalaxy.org.au/published/workflow?id=157e7614ae18849b, https://usegalaxy.org.au/published/workflow?id=1be22b394f9ec3ab, https://usegalaxy.org.au/published/workflow?id=2362ff8880213586, https://usegalaxy.org.au/published/workflow?id=38f57cffaeb0e39f, https://usegalaxy.org.au/published/workflow?id=3d5deed70ac9bde4, https://usegalaxy.org.au/published/workflow?id=3e6f755ee62f7301, https://usegalaxy.org.au/published/workflow?id=46f352c70356184a, https://usegalaxy.org.au/published/workflow?id=47ce6a2d30887637, https://usegalaxy.org.au/published/workflow?id=48a60965b6b3ff54, https://usegalaxy.org.au/published/workflow?id=4bc8ac41ecff7daf, https://usegalaxy.org.au/published/workflow?id=52b6fe5af4911b1a, https://usegalaxy.org.au/published/workflow?id=5442f0437ade82c4, https://usegalaxy.org.au/published/workflow?id=738c0e8227519c25, https://usegalaxy.org.au/published/workflow?id=79f4bdf9aab7c256, https://usegalaxy.org.au/published/workflow?id=7cd4fcc8e06ce4fd, https://usegalaxy.org.au/published/workflow?id=83c20d8e5fd97313, https://usegalaxy.org.au/published/workflow?id=888f8377eb6eabf2, https://usegalaxy.org.au/published/workflow?id=932bad88f8dc8d33, https://usegalaxy.org.au/published/workflow?id=ac89c2d51c32cc9c, https://usegalaxy.org.au/published/workflow?id=ba7a9d4c857d26b7, https://usegalaxy.org/published/workflow?id=00381bbae3fd7e78, https://usegalaxy.org/published/workflow?id=01585f1230125ba1, https://usegalaxy.org/published/workflow?id=02755c14619242da, https://usegalaxy.org/published/workflow?id=02c96a9c6bb708ac, https://usegalaxy.org/published/workflow?id=049e6609da2b67c4, https://usegalaxy.org/published/workflow?id=05bf642dc7c58c40, https://usegalaxy.org/published/workflow?id=0660a00407fc16a1, https://usegalaxy.org/published/workflow?id=06d6dcd2655592af, https://usegalaxy.org/published/workflow?id=0843c6f15eae2f15, https://usegalaxy.org/published/workflow?id=08f58af7b6cc0ab6, https://usegalaxy.org/published/workflow?id=0a57740c68e85e21, https://usegalaxy.org/published/workflow?id=0a89328e6d28dd07, https://usegalaxy.org/published/workflow?id=0b1fa3e8d05d6e53, https://usegalaxy.org/published/workflow?id=0c6dbb2ef5eee5b9, https://usegalaxy.org/published/workflow?id=0cbab8b7044d24f9, https://usegalaxy.org/published/workflow?id=0d8eb75d28fa7df2, https://usegalaxy.org/published/workflow?id=0d8ec47a84766f96, https://usegalaxy.org/published/workflow?id=0ee0493f3168cbb3, https://usegalaxy.org/published/workflow?id=10d8d47f97afc999, https://usegalaxy.org/published/workflow?id=17a7ff756d37a437, https://usegalaxy.org/published/workflow?id=1b4ac2bc54435ae4, https://usegalaxy.org/published/workflow?id=1b57987895f8ca9e, https://usegalaxy.org/published/workflow?id=1cd08f3549cf5589, https://usegalaxy.org/published/workflow?id=1d748868e78275dd, https://usegalaxy.org/published/workflow?id=1deaf458d6d8695a, https://usegalaxy.org/published/workflow?id=1e53fcd07ae5d859, https://usegalaxy.org/published/workflow?id=1e6a0d6395cf6221, https://usegalaxy.org/published/workflow?id=1f48b44fa22ac5fc, https://usegalaxy.org/published/workflow?id=1f4dc0488f0554c6, https://usegalaxy.org/published/workflow?id=1fdd58f4b7a6f643, https://usegalaxy.org/published/workflow?id=20023b26bb60f4df, https://usegalaxy.org/published/workflow?id=202648c6c615929b, https://usegalaxy.org/published/workflow?id=20fe561687df596c, https://usegalaxy.org/published/workflow?id=21a047a4e068860f, https://usegalaxy.org/published/workflow?id=22f6b939e97d3b47, https://usegalaxy.org/published/workflow?id=23c4e801213eee50, https://usegalaxy.org/published/workflow?id=24663ad42c78106c, https://usegalaxy.org/published/workflow?id=2478426a119d9d93, https://usegalaxy.org/published/workflow?id=2497103d279cd20e, https://usegalaxy.org/published/workflow?id=2524e026f069e885, https://usegalaxy.org/published/workflow?id=262ab42118016c41, https://usegalaxy.org/published/workflow?id=2644a8c0da3066c5, https://usegalaxy.org/published/workflow?id=26c4909f2f3df704, https://usegalaxy.org/published/workflow?id=270e2cb6b02afc9c, https://usegalaxy.org/published/workflow?id=28abac549697f65a, https://usegalaxy.org/published/workflow?id=2af3de32c630e1b4, https://usegalaxy.org/published/workflow?id=2bf89464c21ec7cd, https://usegalaxy.org/published/workflow?id=2ceff2cf26eae4cd, https://usegalaxy.org/published/workflow?id=2d30be556aab1f52, https://usegalaxy.org/published/workflow?id=2d44e2b020bf94f8, https://usegalaxy.org/published/workflow?id=2db2d27f0c627f44, https://usegalaxy.org/published/workflow?id=2dd4f04c7de7d173, https://usegalaxy.org/published/workflow?id=2e65bc5f9d9f2a75, https://usegalaxy.org/published/workflow?id=31acbfc6d3775846, https://usegalaxy.org/published/workflow?id=3565de0b5f5da36f, https://usegalaxy.org/published/workflow?id=36bd1c3d32150b90, https://usegalaxy.org/published/workflow?id=371b242d97f2f030, https://usegalaxy.org/published/workflow?id=3767c9c07462b777, https://usegalaxy.org/published/workflow?id=38cc6577c9b15275, https://usegalaxy.org/published/workflow?id=39753cc73284963f, https://usegalaxy.org/published/workflow?id=399b4543d26990f2, https://usegalaxy.org/published/workflow?id=39d2d8b7557a3aa4, https://usegalaxy.org/published/workflow?id=39e79458c9ba581c, https://usegalaxy.org/published/workflow?id=3bed12ef73ba93bf, https://usegalaxy.org/published/workflow?id=3dc57709c4387ba7, https://usegalaxy.org/published/workflow?id=3e2bbafb8c6580af, https://usegalaxy.org/published/workflow?id=3f2d1003ff959c7c, https://usegalaxy.org/published/workflow?id=4054ceeba1a2fa69, https://usegalaxy.org/published/workflow?id=414fa13b613b33d8, https://usegalaxy.org/published/workflow?id=415c7152cb78e86f, https://usegalaxy.org/published/workflow?id=4164a02a6bd70893, https://usegalaxy.org/published/workflow?id=41bbf3cd893d400a, https://usegalaxy.org/published/workflow?id=4357180d40560019, https://usegalaxy.org/published/workflow?id=43861b38cf6e927e, https://usegalaxy.org/published/workflow?id=43ca7614f6bb03d2, https://usegalaxy.org/published/workflow?id=446a9297e64ecb72, https://usegalaxy.org/published/workflow?id=449a419bcfd3c49e, https://usegalaxy.org/published/workflow?id=46d035f814a9b4f8, https://usegalaxy.org/published/workflow?id=46e4acdc08eb3ea5, https://usegalaxy.org/published/workflow?id=470b41d0e43bb46b, https://usegalaxy.org/published/workflow?id=483a98be358ce21c, https://usegalaxy.org/published/workflow?id=48963532e030de6c, https://usegalaxy.org/published/workflow?id=496b0e8a0e5a4191, https://usegalaxy.org/published/workflow?id=49c61c378cacfe02, https://usegalaxy.org/published/workflow?id=49f8b32c3206f76c, https://usegalaxy.org/published/workflow?id=4cbb8181cfdf55d9, https://usegalaxy.org/published/workflow?id=4d0607d3589e0775, https://usegalaxy.org/published/workflow?id=4d251ecda59c87c5, https://usegalaxy.org/published/workflow?id=4dbac8374419d29e, https://usegalaxy.org/published/workflow?id=4e3efbdd0c4c3e64, https://usegalaxy.org/published/workflow?id=4ed9f54caa932479, https://usegalaxy.org/published/workflow?id=4f459cfef6108e75, https://usegalaxy.org/published/workflow?id=50206b10de958d03, https://usegalaxy.org/published/workflow?id=51754f5039d2f244, https://usegalaxy.org/published/workflow?id=528ed34505b1a993, https://usegalaxy.org/published/workflow?id=529c6c68df669c51, https://usegalaxy.org/published/workflow?id=535484d6482b80f4, https://usegalaxy.org/published/workflow?id=53f11afc67ffb66f, https://usegalaxy.org/published/workflow?id=55c09bcdf3d7ae16, https://usegalaxy.org/published/workflow?id=5641d1cbe795203f, https://usegalaxy.org/published/workflow?id=57726b39bbfb0c54, https://usegalaxy.org/published/workflow?id=57cfc1b5d9ea0d72, https://usegalaxy.org/published/workflow?id=5951d11d3122abed, https://usegalaxy.org/published/workflow?id=5cad854edbbd3b69, https://usegalaxy.org/published/workflow?id=5ce5b3061c6afd82, https://usegalaxy.org/published/workflow?id=5eb2e090df59d9a9, https://usegalaxy.org/published/workflow?id=5fa548beeb1411f2, https://usegalaxy.org/published/workflow?id=5ffeb9904cf5f0bf, https://usegalaxy.org/published/workflow?id=60e999ef3dcff4ca, https://usegalaxy.org/published/workflow?id=61d03396ad7f25b9, https://usegalaxy.org/published/workflow?id=62ae08ab1133c22f, https://usegalaxy.org/published/workflow?id=62b052f47ccf0a8c, https://usegalaxy.org/published/workflow?id=63e0dcf18794dbc1, https://usegalaxy.org/published/workflow?id=658f6e4985b6e4a7, https://usegalaxy.org/published/workflow?id=668df61f85b5b166, https://usegalaxy.org/published/workflow?id=67e3457099db3ed2, https://usegalaxy.org/published/workflow?id=67e56a9919ed84f7, https://usegalaxy.org/published/workflow?id=6822f413a3b09cb4, https://usegalaxy.org/published/workflow?id=683a0ab042fa34c9, https://usegalaxy.org/published/workflow?id=688a55b9ec2f5bf7, https://usegalaxy.org/published/workflow?id=68d05aae72fcd2c9, https://usegalaxy.org/published/workflow?id=692a2b0bb818336d, https://usegalaxy.org/published/workflow?id=695152887ca01bf0, https://usegalaxy.org/published/workflow?id=695d20ef3ee4cf1e, https://usegalaxy.org/published/workflow?id=6a08af55c086ec62, https://usegalaxy.org/published/workflow?id=6a3e47124e32e260, https://usegalaxy.org/published/workflow?id=6cb8b40b819f2764, https://usegalaxy.org/published/workflow?id=6d60c4491138813a, https://usegalaxy.org/published/workflow?id=6d68f56abf9c624d, https://usegalaxy.org/published/workflow?id=6d8f0be547b12528, https://usegalaxy.org/published/workflow?id=6da54816b436dc58, https://usegalaxy.org/published/workflow?id=6dd383fd86fea674, https://usegalaxy.org/published/workflow?id=70dacee3da375e2b, https://usegalaxy.org/published/workflow?id=71f129d96b81851e, https://usegalaxy.org/published/workflow?id=7203eb3b663bca11, https://usegalaxy.org/published/workflow?id=725f7ffa1cffa069, https://usegalaxy.org/published/workflow?id=729780617ceb80db, https://usegalaxy.org/published/workflow?id=76247065c01f01d1, https://usegalaxy.org/published/workflow?id=779ea0b19d07a1bd, https://usegalaxy.org/published/workflow?id=78979ec454b98338, https://usegalaxy.org/published/workflow?id=78db135e2aa5789d, https://usegalaxy.org/published/workflow?id=7965d84a9f71da93, https://usegalaxy.org/published/workflow?id=7a2b4675c758f34e, https://usegalaxy.org/published/workflow?id=7c3faadda8f89749, https://usegalaxy.org/published/workflow?id=7d110e1fca0ac973, https://usegalaxy.org/published/workflow?id=7decdde67868ed0f, https://usegalaxy.org/published/workflow?id=803215ef8142c069, https://usegalaxy.org/published/workflow?id=8041fad92ef6e904, https://usegalaxy.org/published/workflow?id=80b12b6e7ac8861f, https://usegalaxy.org/published/workflow?id=840a7be198dc8ae4, https://usegalaxy.org/published/workflow?id=865d2cc4d14ec7e1, https://usegalaxy.org/published/workflow?id=8689dc9eac10c871, https://usegalaxy.org/published/workflow?id=86b802ea75d18160, https://usegalaxy.org/published/workflow?id=884ee0057bde9135, https://usegalaxy.org/published/workflow?id=88d0b64011c3148c, https://usegalaxy.org/published/workflow?id=89660361d4121fa8, https://usegalaxy.org/published/workflow?id=8b08a05c5926dd0f, https://usegalaxy.org/published/workflow?id=8b133c1d302c8681, https://usegalaxy.org/published/workflow?id=8c1516493c55bf7d, https://usegalaxy.org/published/workflow?id=8caea3788657235d, https://usegalaxy.org/published/workflow?id=8daa91d54040ba95, https://usegalaxy.org/published/workflow?id=906cc2c2d4e24483, https://usegalaxy.org/published/workflow?id=953d9cbe05e632a8, https://usegalaxy.org/published/workflow?id=99bc7ba3faa7ed55, https://usegalaxy.org/published/workflow?id=9adf8691809326e5, https://usegalaxy.org/published/workflow?id=9b32025036bdacb9, https://usegalaxy.org/published/workflow?id=9b4323b68f609e06, https://usegalaxy.org/published/workflow?id=9b81d47a468d6f99, https://usegalaxy.org/published/workflow?id=9bf1d223a57f88da, https://usegalaxy.org/published/workflow?id=9c0bbf9e1c90cd66, https://usegalaxy.org/published/workflow?id=9d2d8c39b63d8ef0, https://usegalaxy.org/published/workflow?id=9d456396b9cd79d7, https://usegalaxy.org/published/workflow?id=9d626a89800a96ca, https://usegalaxy.org/published/workflow?id=9f5f2e309a3ea50c, https://usegalaxy.org/published/workflow?id=a0451d7084d7732b, https://usegalaxy.org/published/workflow?id=a1ecf04e085b0cda, https://usegalaxy.org/published/workflow?id=a23bf4cd3bc97f2a, https://usegalaxy.org/published/workflow?id=a37961bf3d435918, https://usegalaxy.org/published/workflow?id=a3f7a57dbf8f0741, https://usegalaxy.org/published/workflow?id=a4f7af1e2cd826c3, https://usegalaxy.org/published/workflow?id=a7ecb65025ad9c86, https://usegalaxy.org/published/workflow?id=a89eaad3f42ec41c, https://usegalaxy.org/published/workflow?id=a98a3ac1a41752bc, https://usegalaxy.org/published/workflow?id=ab6e4277fc825c5d, https://usegalaxy.org/published/workflow?id=ab8590a0ee1b9951, https://usegalaxy.org/published/workflow?id=ad6143e2f74e1e94, https://usegalaxy.org/published/workflow?id=ada910fc3a68757a, https://usegalaxy.org/published/workflow?id=adf531bc12766c9b, https://usegalaxy.org/published/workflow?id=ae359a3c83f2e19f, https://usegalaxy.org/published/workflow?id=ae83fb92e697e009, https://usegalaxy.org/published/workflow?id=af5acb5dd7bfac56, https://usegalaxy.org/published/workflow?id=b1004c9974ceb785, https://usegalaxy.org/published/workflow?id=b16a1642e2cd54a2, https://usegalaxy.org/published/workflow?id=b300d028da9b8396, https://usegalaxy.org/published/workflow?id=b33ad2032a655706, https://usegalaxy.org/published/workflow?id=b461ac6f18e0c9cf, https://usegalaxy.org/published/workflow?id=b4d57f2aa0678ad2, https://usegalaxy.org/published/workflow?id=b50f2446d5e60334, https://usegalaxy.org/published/workflow?id=b561d3d9645a2726, https://usegalaxy.org/published/workflow?id=b6d90898e2db6aba, https://usegalaxy.org/published/workflow?id=b8804291f2754fc8, https://usegalaxy.org/published/workflow?id=b9e6ddbc79904844, https://usegalaxy.org/published/workflow?id=ba347b695dbff2ea, https://usegalaxy.org/published/workflow?id=ba405b449e27ba37, https://usegalaxy.org/published/workflow?id=ba68fd4b4348e63c, https://usegalaxy.org/published/workflow?id=baab0758f2240225, https://usegalaxy.org/published/workflow?id=bb16936081b820f6, https://usegalaxy.org/published/workflow?id=bbe958a8c0bf4955, https://usegalaxy.org/published/workflow?id=bd00c8a7a3b7e5be, https://usegalaxy.org/published/workflow?id=bd184804cfddafc4, https://usegalaxy.org/published/workflow?id=bf90f2bd20fbff21, https://usegalaxy.org/published/workflow?id=bfd3ba54576d2d81, https://usegalaxy.org/published/workflow?id=bfee1238c70627cb, https://usegalaxy.org/published/workflow?id=c11dfc3314e33b33, https://usegalaxy.org/published/workflow?id=c12e6b7896f8e114, https://usegalaxy.org/published/workflow?id=c337e5265a8079d0, https://usegalaxy.org/published/workflow?id=c4aaf11b0cb6e5ac, https://usegalaxy.org/published/workflow?id=c4af6c5f5dfaae82, https://usegalaxy.org/published/workflow?id=c57c820557ae9b55, https://usegalaxy.org/published/workflow?id=c75fcf2b7ba057fd, https://usegalaxy.org/published/workflow?id=c7b2d2ccc4b0dec5, https://usegalaxy.org/published/workflow?id=c95fc8692a886a59, https://usegalaxy.org/published/workflow?id=c9e442a395fc1a58, https://usegalaxy.org/published/workflow?id=cb03300161109123, https://usegalaxy.org/published/workflow?id=cbfdd5c8261fea57, https://usegalaxy.org/published/workflow?id=cc6ee582a6e5cae2, https://usegalaxy.org/published/workflow?id=ced446bf2428497b, https://usegalaxy.org/published/workflow?id=cfd37af9d6e4cbdb, https://usegalaxy.org/published/workflow?id=d0981820adf9c7d2, https://usegalaxy.org/published/workflow?id=d196c3bde666eccb, https://usegalaxy.org/published/workflow?id=d2edc47cc7963885, https://usegalaxy.org/published/workflow?id=d314df52f2f51502, https://usegalaxy.org/published/workflow?id=d3428dd172a78102, https://usegalaxy.org/published/workflow?id=d3e656ab45f40c11, https://usegalaxy.org/published/workflow?id=d3eae9943ce2a62b, https://usegalaxy.org/published/workflow?id=d43b771d93f0f609, https://usegalaxy.org/published/workflow?id=d50b2df115706adb, https://usegalaxy.org/published/workflow?id=d7049965ca7d8ea9, https://usegalaxy.org/published/workflow?id=d7d65ee5c5ca951f, https://usegalaxy.org/published/workflow?id=d7e14ff032a6ac4f, https://usegalaxy.org/published/workflow?id=d85f8ef78040fbb1, https://usegalaxy.org/published/workflow?id=db8443163482a2e0, https://usegalaxy.org/published/workflow?id=dbcf0fbf5329b3fb, https://usegalaxy.org/published/workflow?id=dbdc894ad54675a8, https://usegalaxy.org/published/workflow?id=dddd23119443b85e, https://usegalaxy.org/published/workflow?id=de2861cdbd4e29ce, https://usegalaxy.org/published/workflow?id=df1fa0b73f741a9c, https://usegalaxy.org/published/workflow?id=df6b9760e071b91b, https://usegalaxy.org/published/workflow?id=df6c398b2d4f1e99, https://usegalaxy.org/published/workflow?id=e1211222348b4653, https://usegalaxy.org/published/workflow?id=e2c77aeabb8053b4, https://usegalaxy.org/published/workflow?id=e2d7b8a4e6c422a3, https://usegalaxy.org/published/workflow?id=e336bca259abd474, https://usegalaxy.org/published/workflow?id=e51aaf4d6b16b4d4, https://usegalaxy.org/published/workflow?id=e57d595b0cde1614, https://usegalaxy.org/published/workflow?id=e64a6119053cb126, https://usegalaxy.org/published/workflow?id=e67db5dc8eab60f3, https://usegalaxy.org/published/workflow?id=e6a6223ef5ef85a7, https://usegalaxy.org/published/workflow?id=e6b803c1232cd08e, https://usegalaxy.org/published/workflow?id=e6f57346a02be07f, https://usegalaxy.org/published/workflow?id=e7030b62a3335bd7, https://usegalaxy.org/published/workflow?id=eb4b32fcf4a9f64a, https://usegalaxy.org/published/workflow?id=ebbcdc389aad0eb8, https://usegalaxy.org/published/workflow?id=ebc9aad36017b567, https://usegalaxy.org/published/workflow?id=ec3d8d5d1531f92e, https://usegalaxy.org/published/workflow?id=ec96e3bf30d5f771, https://usegalaxy.org/published/workflow?id=edb299ecbf147618, https://usegalaxy.org/published/workflow?id=ef44d02a79bd28bf, https://usegalaxy.org/published/workflow?id=f0feca8af9aeddba, https://usegalaxy.org/published/workflow?id=f1a9667c0b0999f4, https://usegalaxy.org/published/workflow?id=f23e5f333987a89f, https://usegalaxy.org/published/workflow?id=f302d673420a9bdd, https://usegalaxy.org/published/workflow?id=f39603063febba82, https://usegalaxy.org/published/workflow?id=f3aba99a8204081e, https://usegalaxy.org/published/workflow?id=f3ed710e251833a7, https://usegalaxy.org/published/workflow?id=f4ed1c9434ed0445, https://usegalaxy.org/published/workflow?id=f60818a405f1bbbd, https://usegalaxy.org/published/workflow?id=f63f7a0a33a83841, https://usegalaxy.org/published/workflow?id=f88f186bc851e954, https://usegalaxy.org/published/workflow?id=f9d546aae406cf15, https://usegalaxy.org/published/workflow?id=fae519dcba6bfc72, https://usegalaxy.org/published/workflow?id=feeec17310351914, https://usegalaxy.org/published/workflow?id=ff137b61d4ef1b86, https://workflowhub.eu/workflows/111?version=5, https://workflowhub.eu/workflows/1407?version=1, https://workflowhub.eu/workflows/1437?version=1, https://workflowhub.eu/workflows/1651?version=1, https://workflowhub.eu/workflows/1655?version=1, https://workflowhub.eu/workflows/1659?version=1, https://workflowhub.eu/workflows/1660?version=1, https://workflowhub.eu/workflows/1668?version=1, https://workflowhub.eu/workflows/1672?version=1, https://workflowhub.eu/workflows/1678?version=1, https://workflowhub.eu/workflows/1788?version=1, https://workflowhub.eu/workflows/628?version=1, https://workflowhub.eu/workflows/676?version=1 |
proteomics/neoantigen-non-reference-database-generation, proteomics/proteogenomics-dbcreation, variant-analysis/dip, variant-analysis/dunovo, variant-analysis/exome-seq, variant-analysis/non-dip, variant-analysis/somatic-variant-discovery, variant-analysis/somatic-variants |
|
freyja |
freyja_aggregate_plot, freyja_boot, freyja_demix, freyja_variants |
lineage abundances estimation |
2022-07-05 |
https://github.com/andersen-lab/Freyja |
2.0.0 |
freyja |
2.0.0 |
Up-to-date |
Metagenomics, Sequence Analysis |
RNA-Seq quantification |
RNA-Seq quantification |
Metagenomics |
Metagenomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/freyja |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/freyja |
freyja |
Freyja |
Recover relative lineage abundances from mixed SARS-CoV-2 samples from a sequencing dataset |
|
2 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
51 |
51 |
24563 |
24563 |
14 |
14 |
283 |
283 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
24846 |
24846 |
65 |
65 |
https://usegalaxy.eu/published/workflow?id=4a764275d4bf9f31, https://usegalaxy.eu/published/workflow?id=d88145e7475e0b7b |
|
|
funannotate |
funannotate_annotate, funannotate_clean, funannotate_compare, funannotate_predict, funannotate_sort |
Funannotate is a genome prediction, annotation, and comparison software package. |
2021-08-26 |
https://funannotate.readthedocs.io |
1.8.17 |
|
|
To update |
Genome annotation |
Genome annotation |
Genome annotation |
Genomics |
Genomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate |
funannotate |
funannotate |
funannotate is a pipeline for genome annotation (built specifically for fungi, but will also work with higher eukaryotes). |
|
3 |
5 |
5 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
5 |
0 |
0 |
675 |
675 |
11102 |
11102 |
50 |
50 |
360 |
360 |
273 |
273 |
7353 |
7353 |
86 |
86 |
1401 |
1401 |
20216 |
20216 |
1084 |
1084 |
https://dev.workflowhub.eu/workflows/1202?version=1, https://dev.workflowhub.eu/workflows/1264?version=2, https://usegalaxy.cz/published/workflow?id=932f4901960a595a, https://usegalaxy.org.au/published/workflow?id=4e161a8f5098cc49, https://usegalaxy.org.au/published/workflow?id=52065a4100b11184, https://usegalaxy.org.au/published/workflow?id=a9068ea858222e2b, https://usegalaxy.org/published/workflow?id=7251c6e0dad8f927, https://workflowhub.eu/workflows/1525?version=1, https://workflowhub.eu/workflows/1656?version=1, https://workflowhub.eu/workflows/358?version=1, https://workflowhub.eu/workflows/754?version=1 |
ecology/phylogeny-data-prep, genome-annotation/funannotate |
|
gamma |
gamma_s, gamma |
Gene Allele Mutation Microbial Assessment |
2025-08-06 |
https://github.com/rastanton/GAMMA |
2.2 |
GAMMA |
2.2 |
Up-to-date |
Metagenomics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/gamma/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/gamma |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
gatk4_mutect2 |
gatk4_mutect2 |
A Galaxy wrapper for Mutect2 from GATK |
2019-10-28 |
https://software.broadinstitute.org/gatk/gatk4 |
4.1.7.0 |
gatk4 |
4.6.2.0 |
To update |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/gatk4 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/gatk4 |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
502 |
512 |
3722 |
3797 |
1777 |
1778 |
10032 |
10036 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
13833 |
13754 |
2290 |
2279 |
https://usegalaxy.eu/published/workflow?id=93e32219d412c1f1, https://usegalaxy.eu/published/workflow?id=b02d90c32dc67730, https://usegalaxy.org/published/workflow?id=2f21358621337cf2, https://usegalaxy.org/published/workflow?id=39753cc73284963f, https://usegalaxy.org/published/workflow?id=eb33df15225b8aa0, https://usegalaxy.org/published/workflow?id=eb4b32fcf4a9f64a, https://usegalaxy.org/published/workflow?id=eed1aadf2fb83f6c, https://workflowhub.eu/workflows/35?version=1 |
|
|
gdcwebapp |
data_source_gdcwebapp |
GDCWebApp automatically filter, extract, and convert genomic data from the Genomic Data Commons portal to BED format |
2017-06-23 |
http://bioinf.iasi.cnr.it/gdcwebapp/ |
1.0.0 |
python |
|
To update |
Data Source, Convert Formats |
|
|
|
|
iuc |
https://github.com/fabio-cumbo/GDCWebApp4Galaxy |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/gdcwebapp |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
gecko |
gecko |
Ungapped genome comparison |
2020-11-25 |
https://github.com/otorreno/gecko |
1.2 |
gecko |
1.2 |
Up-to-date |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/gecko |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/gecko |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
285 |
285 |
879 |
879 |
0 |
0 |
0 |
0 |
120 |
120 |
874 |
874 |
0 |
0 |
0 |
0 |
1753 |
1753 |
405 |
405 |
https://dev.workflowhub.eu/workflows/1160?version=2, https://workflowhub.eu/workflows/1541?version=1 |
genome-annotation/hpc-for-lsgc |
|
gem_tools |
gem_check_memote, gem_escher_visualization, gem_extract_exchange, gem_flux_distribution, gem_flux_variability_analysis, gem_knockout, gem_phenotype_phase_plane |
Tools for analyzing genome-scale metabolic models (GEMs) using COBRApy and related libraries. |
2024-12-01 |
https://github.com/AlmaasLab/elixir-galaxy-tools-systemsbiology |
0.29.1 |
cobra |
0.21.0 |
To update |
Metabolomics, Systems Biology, Synthetic Biology |
|
|
|
|
iuc |
https://github.com/AlmaasLab/elixir-galaxy-tools-systemsbiology |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/gem_tools |
|
|
|
|
0 |
7 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
gemini |
gemini_@BINARY@, gemini_@BINARY@, gemini_@BINARY@, gemini_@BINARY@, gemini_db_info, gemini_@BINARY@, gemini_@BINARY@, gemini_inheritance, gemini_@BINARY@, gemini_@BINARY@, gemini_@BINARY@, gemini_@BINARY@, gemini_@BINARY@, gemini_@BINARY@, gemini_@BINARY@, gemini_@BINARY@, gemini_@BINARY@, gemini_@BINARY@ |
GEMINI: a flexible framework for exploring genome variation |
2014-11-09 |
https://github.com/arq5x/gemini |
0.20.1 |
gemini |
0.30.2 |
To update |
Sequence Analysis, Next Gen Mappers |
Sequence analysis, Genetic variation analysis |
Sequence analysis, Genetic variation analysis |
Sequence analysis |
Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/gemini |
gemini |
GEMINI |
GEMINI (GEnome MINIng) is a flexible framework for exploring genetic variation in the context of the wealth of genome annotations available for the human genome. By placing genetic variants, sample phenotypes and genotypes, as well as genome annotations into an integrated database framework, GEMINI provides a simple, flexible, and powerful system for exploring genetic variation for disease and population genetics. |
|
1 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
1269 |
1367 |
4844 |
5696 |
441 |
441 |
1502 |
1628 |
423 |
423 |
4039 |
4175 |
25 |
25 |
78 |
78 |
11577 |
10463 |
2256 |
2158 |
https://dev.workflowhub.eu/workflows/1096?version=2, https://dev.workflowhub.eu/workflows/1104?version=1, https://dev.workflowhub.eu/workflows/1108?version=1, https://dev.workflowhub.eu/workflows/1114?version=1, https://usegalaxy.eu/published/workflow?id=2aede5c6577b28f5, https://usegalaxy.eu/published/workflow?id=3570835f21365be7, https://usegalaxy.eu/published/workflow?id=b3b094f1bdbaa04a, https://usegalaxy.eu/published/workflow?id=b3c0eba755f269b2, https://usegalaxy.eu/published/workflow?id=b82a4065be048ef6, https://usegalaxy.org.au/published/workflow?id=1be22b394f9ec3ab, https://usegalaxy.org.au/published/workflow?id=5442f0437ade82c4, https://usegalaxy.org.au/published/workflow?id=ac89c2d51c32cc9c, https://workflowhub.eu/workflows/1636?version=1, https://workflowhub.eu/workflows/1655?version=1, https://workflowhub.eu/workflows/1668?version=1, https://workflowhub.eu/workflows/1672?version=1, https://workflowhub.eu/workflows/363?version=2 |
variant-analysis/dip, variant-analysis/exome-seq, variant-analysis/trio-analysis |
|
gemini |
glimmer_acgt_content, glimmer_build_icm, glimmer_extract, glimmer_gbk_to_orf, glimmer_glimmer_to_gff, glimmer_long_orfs, glimmer_knowledge_based, glimmer_not_knowledge_based |
Glimmer makes gene predictions. |
2017-11-28 |
https://ccb.jhu.edu/software/glimmer/ |
3.02 |
glimmer |
3.02 |
Up-to-date |
Sequence Analysis |
Sequence analysis, Genetic variation analysis |
Sequence analysis, Genetic variation analysis |
Sequence analysis |
Sequence analysis |
bgruening |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/glimmer |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/glimmer |
gemini |
GEMINI |
GEMINI (GEnome MINIng) is a flexible framework for exploring genetic variation in the context of the wealth of genome annotations available for the human genome. By placing genetic variants, sample phenotypes and genotypes, as well as genome annotations into an integrated database framework, GEMINI provides a simple, flexible, and powerful system for exploring genetic variation for disease and population genetics. |
|
0 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
0 |
0 |
308 |
308 |
4543 |
4543 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4543 |
4543 |
308 |
308 |
https://dev.workflowhub.eu/workflows/1264?version=2, https://usegalaxy.eu/published/workflow?id=3dcf09e75d707573, https://usegalaxy.eu/published/workflow?id=c0f225536e78a178, https://workflowhub.eu/workflows/1656?version=1, https://workflowhub.eu/workflows/358?version=1 |
ecology/phylogeny-data-prep |
|
genebed_maf_to_fasta |
GeneBed_Maf_Fasta2 |
Stitch gene blocks given a set of coding exon intervals |
2020-08-05 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/genebed_maf_to_fasta/ |
1.0.1+galaxy0 |
|
|
To update |
Genomic Interval Operations |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/genebed_maf_to_fasta/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/genebed_maf_to_fasta |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
1 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
1 |
1 |
1 |
0 |
1 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
0 |
2 |
2 |
4 |
4 |
19 |
279 |
210 |
2905 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2909 |
214 |
281 |
21 |
|
|
|
genehunter_modscore |
genehunter_modscore |
Maximised LOD score pedigree analysis utility |
2017-11-27 |
https://www.unimedizin-mainz.de/imbei/biometricsgenomic-statistics-and-bioinformatics/software/genehunter-modscore-40.html?L=1 |
3.0.0 |
ghm |
3.1 |
To update |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/genehunter_modscore/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/genehunter_modscore |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
geneiobio |
gene_iobio_display_generation_iframe |
Gene.iobio is an interactive tool for variant and trio analysis. |
2023-06-20 |
https://github.com/iobio/gene.iobio |
4.7.1+galaxy1 |
|
|
To update |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/geneiobio |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/geneiobio |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
36 |
36 |
143 |
143 |
0 |
0 |
0 |
0 |
7 |
7 |
102 |
102 |
0 |
0 |
0 |
0 |
245 |
245 |
43 |
43 |
https://dev.workflowhub.eu/workflows/1096?version=2, https://usegalaxy.eu/published/workflow?id=b3c0eba755f269b2, https://workflowhub.eu/workflows/1636?version=1 |
variant-analysis/trio-analysis |
|
genetrack |
genetrack |
Contains a tool that separately identifies peaks on the forward "+” (W) and reverse “-” (C) strand. |
2015-12-18 |
|
|
numpy |
|
To update |
ChIP-seq |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/genetrack |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/genetrack |
|
|
|
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
94 |
201 |
365 |
670 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
670 |
365 |
201 |
94 |
|
|
|
genomescope |
genomescope |
Analyze unassembled short reads |
2021-04-30 |
https://github.com/tbenavi1/genomescope2.0 |
2.0.1 |
genomescope2 |
2.0.1 |
Up-to-date |
Statistics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/genomescope |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/genomescope |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
746 |
746 |
3589 |
3589 |
514 |
514 |
2506 |
2506 |
167 |
167 |
1857 |
1857 |
31 |
31 |
588 |
588 |
8540 |
8540 |
1458 |
1458 |
https://dev.workflowhub.eu/workflows/1002?version=1, https://dev.workflowhub.eu/workflows/1127?version=3, https://dev.workflowhub.eu/workflows/1166?version=2, https://dev.workflowhub.eu/workflows/1187?version=2, https://usegalaxy.eu/published/workflow?id=0ccb3838765a8b84, https://usegalaxy.eu/published/workflow?id=0e642b5407dd595b, https://usegalaxy.eu/published/workflow?id=0fef06a87389eb59, https://usegalaxy.eu/published/workflow?id=10bde4e7f8dbd0c4, https://usegalaxy.eu/published/workflow?id=11ce7a7bf3d075e0, https://usegalaxy.eu/published/workflow?id=238606356787b876, https://usegalaxy.eu/published/workflow?id=29b4710cd24995b2, https://usegalaxy.eu/published/workflow?id=3069c17b52decab4, https://usegalaxy.eu/published/workflow?id=3788bb24b97f7b83, https://usegalaxy.eu/published/workflow?id=41c48e4632684f76, https://usegalaxy.eu/published/workflow?id=7f5da1ebd6673841, https://usegalaxy.eu/published/workflow?id=a85be448600a6789, https://usegalaxy.eu/published/workflow?id=acd29212884f967b, https://usegalaxy.eu/published/workflow?id=acfc7d1b03d5fbd0, https://usegalaxy.eu/published/workflow?id=bc32937d505135ab, https://usegalaxy.eu/published/workflow?id=c2c7f1815c411bfb, https://usegalaxy.eu/published/workflow?id=d1e3d3bb0922d771, https://usegalaxy.eu/published/workflow?id=d67299c34e63f3d9, https://usegalaxy.eu/published/workflow?id=db6640887b5ca0cd, https://usegalaxy.eu/published/workflow?id=dec16871152fac35, https://usegalaxy.eu/published/workflow?id=ff16623a63ff5124, https://usegalaxy.org.au/published/workflow?id=049f61f436ff66df, https://usegalaxy.org.au/published/workflow?id=141ac7a106e49d8f, https://usegalaxy.org.au/published/workflow?id=26b57e0b79ea4559, https://usegalaxy.org.au/published/workflow?id=434127690544d0e9, https://usegalaxy.org.au/published/workflow?id=5364e6ec5b4f48cd, https://usegalaxy.org.au/published/workflow?id=6aaaa084d5339c08, https://usegalaxy.org.au/published/workflow?id=6c54e7f7a4bf17ed, https://usegalaxy.org.au/published/workflow?id=6c5b84bcac127272, https://usegalaxy.org.au/published/workflow?id=8dc05e3ba64e981f, https://usegalaxy.org.au/published/workflow?id=ab9f7a97baaa7fa6, https://usegalaxy.org.au/published/workflow?id=b9d0a39d72b8e5f8, https://usegalaxy.org.au/published/workflow?id=c0aa1f64a89a6115, https://usegalaxy.org.au/published/workflow?id=d7c2d0d49b1a6c86, https://usegalaxy.org.au/published/workflow?id=d9ee934bbae0fa01, https://usegalaxy.org/published/workflow?id=14dc039ee7138b8b, https://usegalaxy.org/published/workflow?id=19e2191687f81c21, https://usegalaxy.org/published/workflow?id=2759eaa8adbd2857, https://usegalaxy.org/published/workflow?id=333c5725006e4154, https://usegalaxy.org/published/workflow?id=49e2570e363fda11, https://usegalaxy.org/published/workflow?id=5503f7835226bc04, https://usegalaxy.org/published/workflow?id=6988c29ae84d2788, https://usegalaxy.org/published/workflow?id=7f8d7595cbeebf1d, https://usegalaxy.org/published/workflow?id=815cd221eaaaeb53, https://usegalaxy.org/published/workflow?id=83898f7cbfb7f88e, https://usegalaxy.org/published/workflow?id=9bc46b4d35749b41, https://usegalaxy.org/published/workflow?id=9f1aabc6f5d18d13, https://usegalaxy.org/published/workflow?id=a00f78b74c27b5f3, https://usegalaxy.org/published/workflow?id=ae71399852f34680, https://usegalaxy.org/published/workflow?id=af1f4dba9aaa0b52, https://usegalaxy.org/published/workflow?id=bcf3ff03326c80b7, https://usegalaxy.org/published/workflow?id=c72f94a30ad54327, https://usegalaxy.org/published/workflow?id=faa4f94f070c6213, https://workflowhub.eu/workflows/1103?version=3, https://workflowhub.eu/workflows/1104?version=2, https://workflowhub.eu/workflows/1607?version=1, https://workflowhub.eu/workflows/1608?version=1, https://workflowhub.eu/workflows/1641?version=1, https://workflowhub.eu/workflows/223?version=1, https://workflowhub.eu/workflows/365?version=1, https://workflowhub.eu/workflows/366?version=1, https://workflowhub.eu/workflows/603?version=2, https://workflowhub.eu/workflows/631?version=6, https://workflowhub.eu/workflows/632?version=10, https://workflowhub.eu/workflows/698?version=1 |
assembly/ERGA-post-assembly-QC, assembly/largegenome, assembly/vgp_genome_assembly |
|
genomic_super_signature |
genomic_super_signature |
Interpretation of RNAseq experiments through robust, efficient comparison to public databases |
2022-01-12 |
https://github.com/shbrief/GenomicSuperSignature |
1.2.0 |
bioconductor-genomicsupersignature |
1.14.0 |
To update |
Sequence Analysis, RNA, Transcriptomics |
Gene-set enrichment analysis, Essential dynamics, Deposition, Principal component visualisation, Dimensionality reduction |
Gene-set enrichment analysis, Essential dynamics, Deposition, Principal component visualisation, Dimensionality reduction |
RNA-Seq, Transcriptomics, Microbial ecology, Genotype and phenotype, Microarray experiment |
RNA-Seq, Transcriptomics, Microbial ecology, Genotype and phenotype, Microarray experiment |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/genomic_super_signature |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/genomic_super_signature |
genomicsupersignature |
GenomicSuperSignature |
GenomicSuperSignature is a package for the interpretation of RNA-seq experiments through robust, efficient comparison to public databases. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
17 |
17 |
55 |
55 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
55 |
55 |
17 |
17 |
|
|
|
genrich |
genrich |
Genrich is a peak-caller for genomic enrichment assays (e.g. ChIP-seq, ATAC-seq). |
2019-07-05 |
https://github.com/jsh58/Genrich |
0.5+galaxy2 |
genrich |
0.6.1 |
To update |
ChIP-seq |
|
|
|
|
iuc |
https://github.com/jsh58/Genrich |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/genrich |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
364 |
420 |
2867 |
3663 |
445 |
445 |
2965 |
2965 |
31 |
31 |
628 |
628 |
0 |
0 |
0 |
0 |
7256 |
6460 |
896 |
840 |
https://usegalaxy.eu/published/workflow?id=02655d0e4af0ee0d, https://usegalaxy.org.au/published/workflow?id=99821674db7682bb |
|
|
geopandas |
geopandas_table2geojson |
GeoPandas is an open source project to make working with geospatial data easier. |
2025-04-20 |
https://geopandas.org |
1.1.1 |
geopandas |
|
To update |
Geo Science |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/geopandas |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/geopandas |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
get_hrun |
get_hrun |
Annotate indel variants with homopolymer context |
2021-03-02 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/get_hrun |
0.5.9.2 |
pyfaidx |
0.9.0.1 |
To update |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/get_hrun |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/get_hrun |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
5 |
5 |
9 |
9 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
9 |
9 |
5 |
5 |
|
|
|
getorganelle |
get_annotated_regions_from_gb, get_organelle_from_reads |
GetOrganelle - This toolkit assembles organelle genomes from genomic skimming data. |
2022-03-15 |
https://github.com/Kinggerm/GetOrganelle |
1.7.7.1 |
getorganelle |
1.7.7.1 |
Up-to-date |
Assembly |
De-novo assembly, Genome assembly, Mapping assembly, Mapping, Sequence trimming |
De-novo assembly, Genome assembly, Mapping assembly, Mapping, Sequence trimming |
Cell biology, Sequence assembly, Whole genome sequencing, Plant biology, Model organisms |
Cell biology, Sequence assembly, Whole genome sequencing, Plant biology, Model organisms |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/getorganelle |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/getorganelle |
getorganelle |
GetOrganelle |
A fast and versatile toolkit for accurate de novo assembly of organelle genomes.This toolkit assemblies organelle genome from genomic skimming data. |
|
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
200 |
200 |
2735 |
2735 |
0 |
0 |
0 |
0 |
68 |
68 |
1088 |
1088 |
0 |
0 |
0 |
0 |
3823 |
3823 |
268 |
268 |
https://usegalaxy.org.au/published/workflow?id=f2541030f6d70b59 |
|
|
gfa_to_fa |
gfa_to_fa |
gfa_to_fa - Converting GFA format to Fasta format |
2019-06-18 |
http://gfa-spec.github.io/GFA-spec/ |
0.1.2 |
|
|
To update |
Convert Formats |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/gfa_to_fa |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/gfa_to_fa |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
849 |
876 |
9989 |
10698 |
557 |
559 |
6441 |
6445 |
158 |
158 |
1282 |
1282 |
40 |
40 |
195 |
195 |
18620 |
17907 |
1633 |
1604 |
https://dev.workflowhub.eu/workflows/1002?version=1, https://dev.workflowhub.eu/workflows/1107?version=1, https://dev.workflowhub.eu/workflows/1187?version=2, https://dev.workflowhub.eu/workflows/1435?version=1, https://dev.workflowhub.eu/workflows/584?version=1, https://dev.workflowhub.eu/workflows/585?version=1, https://dev.workflowhub.eu/workflows/586?version=1, https://usegalaxy.eu/published/workflow?id=249c115413f17f28, https://usegalaxy.eu/published/workflow?id=32d2f5340098bcbd, https://usegalaxy.eu/published/workflow?id=39837ca09374598b, https://usegalaxy.eu/published/workflow?id=44e53ea319e07daa, https://usegalaxy.eu/published/workflow?id=83a1b8949d87e3da, https://usegalaxy.eu/published/workflow?id=b4de76c0a4d0e23a, https://usegalaxy.eu/published/workflow?id=c48807045e258dd8, https://usegalaxy.eu/published/workflow?id=d67299c34e63f3d9, https://usegalaxy.eu/published/workflow?id=dc7107896a3f2964, https://usegalaxy.eu/published/workflow?id=fba1671d835b6dd3, https://usegalaxy.org.au/published/workflow?id=044b6b475b4db27a, https://usegalaxy.org.au/published/workflow?id=29f0c07c8a24b542, https://usegalaxy.org.au/published/workflow?id=36604d0ab0dee988, https://usegalaxy.org.au/published/workflow?id=434127690544d0e9, https://usegalaxy.org.au/published/workflow?id=98d3def7da131b4c, https://usegalaxy.org.au/published/workflow?id=afab89bc468da8b3, https://usegalaxy.org.au/published/workflow?id=d9571b3dfef34e5e, https://usegalaxy.org.au/published/workflow?id=e07866576cc2f467, https://usegalaxy.org.au/published/workflow?id=f83a3cda33131fb8, https://workflowhub.eu/workflows/1162?version=2, https://workflowhub.eu/workflows/1163?version=2, https://workflowhub.eu/workflows/1164?version=2, https://workflowhub.eu/workflows/1477?version=1, https://workflowhub.eu/workflows/1607?version=1, https://workflowhub.eu/workflows/221?version=3, https://workflowhub.eu/workflows/406?version=1, https://workflowhub.eu/workflows/605?version=1, https://workflowhub.eu/workflows/606?version=2, https://workflowhub.eu/workflows/608?version=1, https://workflowhub.eu/workflows/701?version=1, https://workflowhub.eu/workflows/702?version=1, https://workflowhub.eu/workflows/789?version=1 |
assembly/hifi-assembly, assembly/vgp_genome_assembly, microbiome/plasmid-metagenomics-nanopore |
|
gff3_rebase |
gff3.rebase |
Rebase a GFF against a parent GFF (e.g. an original genome) |
2015-05-25 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/gff3_rebase |
1.2 |
bcbiogff |
0.6.6 |
To update |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/gff3_rebase |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/gff3_rebase |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
75 |
77 |
1152 |
1173 |
44 |
44 |
206 |
206 |
12 |
12 |
152 |
152 |
1 |
1 |
1 |
1 |
1532 |
1511 |
134 |
132 |
https://usegalaxy.eu/published/workflow?id=0b9071d5dfa38559, https://usegalaxy.eu/published/workflow?id=44189803f223acd1, https://usegalaxy.eu/published/workflow?id=df7d9943423549df, https://usegalaxy.eu/published/workflow?id=f62d7c0c7cc57eb6 |
|
|
gffcompare |
gffcompare |
Galaxy wrappers for Geo Pertea's GffCompare package. |
2017-03-27 |
https://github.com/gpertea/gffcompare/ |
0.12.10 |
gffcompare |
0.12.10 |
Up-to-date |
Transcriptomics |
Sequence annotation |
Sequence annotation |
Nucleic acids, Sequence analysis |
Nucleic acids, Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/gffcompare |
gffcompare |
gffcompare |
Program for comparing, annotating, merging and tracking transcripts in GFF files. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
993 |
1104 |
3718 |
4339 |
1767 |
2717 |
5188 |
8395 |
208 |
243 |
1543 |
1802 |
21 |
21 |
51 |
51 |
14587 |
10500 |
4085 |
2989 |
https://dev.workflowhub.eu/workflows/1042?version=1, https://dev.workflowhub.eu/workflows/1201?version=2, https://dev.workflowhub.eu/workflows/1319?version=2, https://dev.workflowhub.eu/workflows/1324?version=3, https://dev.workflowhub.eu/workflows/1386?version=1, https://dev.workflowhub.eu/workflows/1398?version=1, https://usegalaxy.eu/published/workflow?id=0de150b19102cb7e, https://usegalaxy.eu/published/workflow?id=17916f0229e3c868, https://usegalaxy.eu/published/workflow?id=2287afbf248d9c89, https://usegalaxy.eu/published/workflow?id=39afbf843b5513bf, https://usegalaxy.eu/published/workflow?id=3a8150c81b90a3a7, https://usegalaxy.eu/published/workflow?id=47a0407867a90f95, https://usegalaxy.eu/published/workflow?id=6e6cf59bfeb938bf, https://usegalaxy.eu/published/workflow?id=a2f36d4dd48d8ec2, https://usegalaxy.eu/published/workflow?id=a7638e7f908fd90d, https://usegalaxy.eu/published/workflow?id=b7a3cbcd32734e8b, https://usegalaxy.eu/published/workflow?id=e8202b7b6338005d, https://usegalaxy.eu/published/workflow?id=f026c4b8341ff94c, https://usegalaxy.org.au/published/workflow?id=0ebaaecf61dfc921, https://usegalaxy.org.au/published/workflow?id=157e7614ae18849b, https://usegalaxy.org.au/published/workflow?id=53010c2f1f207429, https://usegalaxy.org.au/published/workflow?id=7cd4fcc8e06ce4fd, https://usegalaxy.org.au/published/workflow?id=e045a6064ad5fdc4, https://usegalaxy.org/published/workflow?id=31c35b9a93237235, https://usegalaxy.org/published/workflow?id=4061e061f659449b, https://usegalaxy.org/published/workflow?id=454d7310d001a4d0, https://usegalaxy.org/published/workflow?id=6a3e47124e32e260, https://usegalaxy.org/published/workflow?id=8700f593a3d642f5, https://usegalaxy.org/published/workflow?id=9c022f4028de0bc6, https://usegalaxy.org/published/workflow?id=e336bca259abd474, https://workflowhub.eu/workflows/1407?version=1, https://workflowhub.eu/workflows/1437?version=1, https://workflowhub.eu/workflows/1685?version=1, https://workflowhub.eu/workflows/1688?version=1, https://workflowhub.eu/workflows/1788?version=1 |
proteomics/neoantigen-non-reference-database-generation, proteomics/proteogenomics-dbcreation, transcriptomics/de-novo, transcriptomics/differential-isoform-expression |
|
gffread |
gffread |
gffread filters and/or converts GFF3/GTF2 records |
2019-10-29 |
http://ccb.jhu.edu/software/stringtie/gff.shtml#gffread/ |
0.12.7 |
gffread |
0.12.7 |
Up-to-date |
Sequence Analysis |
Sequence annotation |
Sequence annotation |
Nucleic acids, Sequence analysis |
Nucleic acids, Sequence analysis |
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/gffread |
gffread |
gffread |
program for filtering, converting and manipulating GFF files |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1991 |
2118 |
13665 |
14952 |
2757 |
3755 |
16661 |
25877 |
774 |
780 |
4805 |
4908 |
79 |
79 |
759 |
761 |
46498 |
35890 |
6732 |
5601 |
https://dev.workflowhub.eu/workflows/1141?version=1, https://dev.workflowhub.eu/workflows/1164?version=2, https://dev.workflowhub.eu/workflows/1194?version=2, https://dev.workflowhub.eu/workflows/1324?version=3, https://dev.workflowhub.eu/workflows/1358?version=2, https://usegalaxy.eu/published/workflow?id=0ab3e47ebd3b520e, https://usegalaxy.eu/published/workflow?id=1590085d315aa80e, https://usegalaxy.eu/published/workflow?id=1d2e17a4f71f2455, https://usegalaxy.eu/published/workflow?id=21dd4bd16579fc12, https://usegalaxy.eu/published/workflow?id=26ad77bc07a7e512, https://usegalaxy.eu/published/workflow?id=2a73d658446747de, https://usegalaxy.eu/published/workflow?id=2f37c35ade97aa8d, https://usegalaxy.eu/published/workflow?id=31bc2a44fb89aa89, https://usegalaxy.eu/published/workflow?id=327beb1edda305ff, https://usegalaxy.eu/published/workflow?id=3d604dad4f1f5b3d, https://usegalaxy.eu/published/workflow?id=4077e77b6af919c4, https://usegalaxy.eu/published/workflow?id=47a0407867a90f95, https://usegalaxy.eu/published/workflow?id=48fe9c4de045d414, https://usegalaxy.eu/published/workflow?id=5be158931abca947, https://usegalaxy.eu/published/workflow?id=67e20e3082d24fbd, https://usegalaxy.eu/published/workflow?id=6ca20e710f4f3ffb, https://usegalaxy.eu/published/workflow?id=6fc2b9bea5b75a49, https://usegalaxy.eu/published/workflow?id=8976041ef89e4548, https://usegalaxy.eu/published/workflow?id=8bc1c3b9e665ea37, https://usegalaxy.eu/published/workflow?id=9a60ecf98d4f8134, https://usegalaxy.eu/published/workflow?id=9b025479fade745d, https://usegalaxy.eu/published/workflow?id=b7a3cbcd32734e8b, https://usegalaxy.eu/published/workflow?id=c5e6047b3b256b06, https://usegalaxy.eu/published/workflow?id=dd8b55e7768843b1, https://usegalaxy.eu/published/workflow?id=f28459c5b16549b7, https://usegalaxy.eu/published/workflow?id=fe64d430d50faf0b, https://usegalaxy.org.au/published/workflow?id=6e1e24f9e0326930, https://usegalaxy.org.au/published/workflow?id=7e40485d1ed45b7c, https://usegalaxy.org/published/workflow?id=07fdeadce7a6d5cb, https://usegalaxy.org/published/workflow?id=173ecc0c88090d0e, https://usegalaxy.org/published/workflow?id=228ae7f537a60226, https://usegalaxy.org/published/workflow?id=2a7fbfc1c17e38bc, https://usegalaxy.org/published/workflow?id=427fce51fd9508eb, https://usegalaxy.org/published/workflow?id=4605309321799e9b, https://usegalaxy.org/published/workflow?id=4e6005819e57ed35, https://usegalaxy.org/published/workflow?id=6d0a3f36d2736087, https://usegalaxy.org/published/workflow?id=734e08331f8f34b7, https://usegalaxy.org/published/workflow?id=7b19452fe35b8b17, https://usegalaxy.org/published/workflow?id=93650de42fb8c015, https://usegalaxy.org/published/workflow?id=a89def2c2462674a, https://usegalaxy.org/published/workflow?id=aac2ae0419f7d515, https://usegalaxy.org/published/workflow?id=b094b6e1e7d48416, https://usegalaxy.org/published/workflow?id=c8653e558a68eb68, https://usegalaxy.org/published/workflow?id=dbe08700353dfc43, https://usegalaxy.org/published/workflow?id=ddb737f2ad0589e8, https://usegalaxy.org/published/workflow?id=ec3cc032a90c44f1, https://usegalaxy.org/published/workflow?id=f4111a169255535c, https://workflowhub.eu/workflows/1255?version=3, https://workflowhub.eu/workflows/1323?version=1, https://workflowhub.eu/workflows/1324?version=1, https://workflowhub.eu/workflows/1484?version=1, https://workflowhub.eu/workflows/1500?version=1, https://workflowhub.eu/workflows/1504?version=1, https://workflowhub.eu/workflows/1509?version=1, https://workflowhub.eu/workflows/1549?version=1, https://workflowhub.eu/workflows/1688?version=1, https://workflowhub.eu/workflows/1746?version=1, https://workflowhub.eu/workflows/37?version=1, https://workflowhub.eu/workflows/39?version=1, https://workflowhub.eu/workflows/40?version=1 |
genome-annotation/annotation-with-maker, genome-annotation/annotation-with-maker-short, genome-annotation/braker3, genome-annotation/comparison-braker-helixer-annotation, genome-annotation/helixer, genome-annotation/lncrna, transcriptomics/differential-isoform-expression |
|
ggplot2 |
ggplot2_barplot, ggplot2_boxplot, ggplot2_heatmap, ggplot2_pca, ggplot2_histogram, ggplot2_point, ggplot2_violin |
ggplot2 is a system for declaratively creating graphics, based on The Grammar of Graphics.You provide the data, tell ggplot2 how to map variables to aesthetics, what graphical primitives to use,and it takes care of the details. |
2017-05-26 |
https://github.com/tidyverse/ggplot2 |
3.5.1 |
r-ggplot2 |
2.2.1 |
To update |
Visualization |
Visualisation |
Visualisation |
Data visualisation |
Data visualisation |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ggplot2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ggplot2 |
ggplot2 |
ggplot2 |
Plotting system for R, based on the grammar of graphics. |
|
5 |
5 |
5 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
0 |
5 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
0 |
0 |
5 |
5 |
5 |
0 |
1702 |
1766 |
26109 |
27684 |
1920 |
1920 |
29746 |
29749 |
1060 |
1060 |
8692 |
8842 |
154 |
154 |
2745 |
2745 |
69020 |
67292 |
4900 |
4836 |
https://dev.workflowhub.eu/workflows/1077?version=2, https://dev.workflowhub.eu/workflows/1085?version=2, https://dev.workflowhub.eu/workflows/1098?version=1, https://dev.workflowhub.eu/workflows/1138?version=2, https://dev.workflowhub.eu/workflows/1185?version=2, https://dev.workflowhub.eu/workflows/1195?version=2, https://dev.workflowhub.eu/workflows/1222?version=1, https://dev.workflowhub.eu/workflows/1297?version=1, https://dev.workflowhub.eu/workflows/1301?version=2, https://dev.workflowhub.eu/workflows/1302?version=1, https://dev.workflowhub.eu/workflows/1380?version=1, https://usegalaxy.cz/published/workflow?id=a5241f01bb65bd38, https://usegalaxy.eu/published/workflow?id=069d99391a69baf4, https://usegalaxy.eu/published/workflow?id=075c4126e66def01, https://usegalaxy.eu/published/workflow?id=098f43ded1b5fa7f, https://usegalaxy.eu/published/workflow?id=0c3ce9feb83f7920, https://usegalaxy.eu/published/workflow?id=0c6dd9e75d9a2130, https://usegalaxy.eu/published/workflow?id=0cf3c2114ab65858, https://usegalaxy.eu/published/workflow?id=16418e8b023ff226, https://usegalaxy.eu/published/workflow?id=204854b8ec94da85, https://usegalaxy.eu/published/workflow?id=2e6ed783bdf05d16, https://usegalaxy.eu/published/workflow?id=3010ecad1a342331, https://usegalaxy.eu/published/workflow?id=319bc351f7a8e358, https://usegalaxy.eu/published/workflow?id=31c6dcd3a25620df, https://usegalaxy.eu/published/workflow?id=31f8c7c46207432f, https://usegalaxy.eu/published/workflow?id=321ea55011f1248f, https://usegalaxy.eu/published/workflow?id=376119528377a3ae, https://usegalaxy.eu/published/workflow?id=389d992ff7268247, https://usegalaxy.eu/published/workflow?id=392a5d91ac221104, https://usegalaxy.eu/published/workflow?id=3ac10b9887fd0fb2, https://usegalaxy.eu/published/workflow?id=3b57fc81001667b5, https://usegalaxy.eu/published/workflow?id=44c92c04f1d14631, https://usegalaxy.eu/published/workflow?id=4949751217c0e211, https://usegalaxy.eu/published/workflow?id=4c0000eb4995a310, https://usegalaxy.eu/published/workflow?id=4d80a87510b2a54e, https://usegalaxy.eu/published/workflow?id=4f245ac304ab76d9, https://usegalaxy.eu/published/workflow?id=4f9f050e34747d51, https://usegalaxy.eu/published/workflow?id=516b4d4146e4af66, https://usegalaxy.eu/published/workflow?id=5395e76fa828c343, https://usegalaxy.eu/published/workflow?id=5bb7691b176d1010, https://usegalaxy.eu/published/workflow?id=5fb6cb6c80a5c62f, https://usegalaxy.eu/published/workflow?id=652433160b04b232, https://usegalaxy.eu/published/workflow?id=68e8042f11d5a3fd, https://usegalaxy.eu/published/workflow?id=6f4bbed7a320dc2f, https://usegalaxy.eu/published/workflow?id=7705b1e25110baf4, https://usegalaxy.eu/published/workflow?id=7b4a9aebb09b51ca, https://usegalaxy.eu/published/workflow?id=7b50e72deb46c6e8, https://usegalaxy.eu/published/workflow?id=7e383fe34031a9d0, https://usegalaxy.eu/published/workflow?id=7e68cf8a67efa8e9, https://usegalaxy.eu/published/workflow?id=8172bf190ce30036, https://usegalaxy.eu/published/workflow?id=82ef590b5821805d, https://usegalaxy.eu/published/workflow?id=836cc09d17eaecb0, https://usegalaxy.eu/published/workflow?id=84236d781f7dd2ad, https://usegalaxy.eu/published/workflow?id=848389c45cebe34f, https://usegalaxy.eu/published/workflow?id=8d00a8b70b0c019c, https://usegalaxy.eu/published/workflow?id=8e92a65d3307d87e, https://usegalaxy.eu/published/workflow?id=95cb04ffb473623b, https://usegalaxy.eu/published/workflow?id=9aa290ce1927d700, https://usegalaxy.eu/published/workflow?id=9ac51f1eeaff5e9c, https://usegalaxy.eu/published/workflow?id=9c5a0596956064a6, https://usegalaxy.eu/published/workflow?id=9e0d784860d6cc91, https://usegalaxy.eu/published/workflow?id=a2b386eef5645acd, https://usegalaxy.eu/published/workflow?id=a2daeb488bee0152, https://usegalaxy.eu/published/workflow?id=a37d1e0db16cfb67, https://usegalaxy.eu/published/workflow?id=a53f78aa6866b811, https://usegalaxy.eu/published/workflow?id=b287bb779cf686ef, https://usegalaxy.eu/published/workflow?id=bc8ccd13a07bd9ec, https://usegalaxy.eu/published/workflow?id=c8bc4af6dd3b5d02, https://usegalaxy.eu/published/workflow?id=c8f94a2e838fc0f1, https://usegalaxy.eu/published/workflow?id=cab2aa791a814d55, https://usegalaxy.eu/published/workflow?id=cc385bd4376a907c, https://usegalaxy.eu/published/workflow?id=d649ec485c4b3994, https://usegalaxy.eu/published/workflow?id=f63127675a07e00a, https://usegalaxy.eu/published/workflow?id=f6a763951d815944, https://usegalaxy.eu/published/workflow?id=f6bd10486a0ba17d, https://usegalaxy.eu/published/workflow?id=f774cf05ddff3612, https://usegalaxy.eu/published/workflow?id=fed55dc53c5325ff, https://usegalaxy.eu/published/workflow?id=feeb1fa358ccf328, https://usegalaxy.fr/published/workflow?id=27682f0045c41ebf, https://usegalaxy.fr/published/workflow?id=7c0a90d4e53bca51, https://usegalaxy.org.au/published/workflow?id=02f2a556e77eed14, https://usegalaxy.org.au/published/workflow?id=053c054592b08dce, https://usegalaxy.org.au/published/workflow?id=09f0170639c978e8, https://usegalaxy.org.au/published/workflow?id=0aa316f8c6cff444, https://usegalaxy.org.au/published/workflow?id=0dbb85f727302a72, https://usegalaxy.org.au/published/workflow?id=11f1564f2bd815d8, https://usegalaxy.org.au/published/workflow?id=12d36e402f858c65, https://usegalaxy.org.au/published/workflow?id=16c6c253e009cc0d, https://usegalaxy.org.au/published/workflow?id=1727d16fa4dec19c, https://usegalaxy.org.au/published/workflow?id=1d1c2589f94fc4df, https://usegalaxy.org.au/published/workflow?id=2f6e22de138a64eb, https://usegalaxy.org.au/published/workflow?id=2fc7d396ef610ed8, https://usegalaxy.org.au/published/workflow?id=2fee25e188531691, https://usegalaxy.org.au/published/workflow?id=3b6e9f03b088bf01, https://usegalaxy.org.au/published/workflow?id=446ba22c3d2f3367, https://usegalaxy.org.au/published/workflow?id=455e68f185fec41b, https://usegalaxy.org.au/published/workflow?id=466809eb3392f7fb, https://usegalaxy.org.au/published/workflow?id=499245b3a113e06d, https://usegalaxy.org.au/published/workflow?id=4ea1049371de111c, https://usegalaxy.org.au/published/workflow?id=518d27f68e05a356, https://usegalaxy.org.au/published/workflow?id=66e530368fd40abd, https://usegalaxy.org.au/published/workflow?id=6ab36c0d5b0d73e0, https://usegalaxy.org.au/published/workflow?id=6c1c11a81a2ab1b8, https://usegalaxy.org.au/published/workflow?id=6de8899c40a90b98, https://usegalaxy.org.au/published/workflow?id=6dfbff6d74c0601b, https://usegalaxy.org.au/published/workflow?id=6ec5728eec9c26d7, https://usegalaxy.org.au/published/workflow?id=7028436ef03171cc, https://usegalaxy.org.au/published/workflow?id=73565f6cb4136370, https://usegalaxy.org.au/published/workflow?id=77b2fcf8c805ad5d, https://usegalaxy.org.au/published/workflow?id=7a97e8ccc332c1e8, https://usegalaxy.org.au/published/workflow?id=868775ef66d174a5, https://usegalaxy.org.au/published/workflow?id=86eb0ea9dc230f04, https://usegalaxy.org.au/published/workflow?id=87bbf9408b3f2a32, https://usegalaxy.org.au/published/workflow?id=9016b2be61f89053, https://usegalaxy.org.au/published/workflow?id=9f112e39bd3bd746, https://usegalaxy.org.au/published/workflow?id=a320948b3eb1a421, https://usegalaxy.org.au/published/workflow?id=ae2a397837b232b1, https://usegalaxy.org.au/published/workflow?id=ae6a03240680712a, https://usegalaxy.org.au/published/workflow?id=b53f82aaf32fbaa9, https://usegalaxy.org.au/published/workflow?id=b5e546197f47f3ec, https://usegalaxy.org.au/published/workflow?id=b60922a253df6654, https://usegalaxy.org.au/published/workflow?id=b9e89401313a0cca, https://usegalaxy.org.au/published/workflow?id=bcb0be4f4a0e369f, https://usegalaxy.org.au/published/workflow?id=be35847680078c90, https://usegalaxy.org.au/published/workflow?id=cac0b8a09d59044b, https://usegalaxy.org.au/published/workflow?id=cf775b8ff0745456, https://usegalaxy.org.au/published/workflow?id=d858cfd9303bb99a, https://usegalaxy.org.au/published/workflow?id=e6552643a3713b50, https://usegalaxy.org.au/published/workflow?id=ea98be0f99aaceb9, https://usegalaxy.org.au/published/workflow?id=ebf88e79c4f094ba, https://usegalaxy.org.au/published/workflow?id=eda40b58616a0fe4, https://usegalaxy.org.au/published/workflow?id=edc20b5e70297a7d, https://usegalaxy.org.au/published/workflow?id=f53d8ade897b3f46, https://usegalaxy.org.au/published/workflow?id=fdec6e2fcd5e2cf5, https://usegalaxy.org/published/workflow?id=155839aeb6340f54, https://usegalaxy.org/published/workflow?id=1e264fc06d87899f, https://usegalaxy.org/published/workflow?id=1ea88ca80a7f0038, https://usegalaxy.org/published/workflow?id=23eeee48217654d4, https://usegalaxy.org/published/workflow?id=28dbbfb3d480f4b1, https://usegalaxy.org/published/workflow?id=28ddea356ae57da1, https://usegalaxy.org/published/workflow?id=2d3063882d8239ff, https://usegalaxy.org/published/workflow?id=325783f21bc5fef6, https://usegalaxy.org/published/workflow?id=349f1bcdbc84045f, https://usegalaxy.org/published/workflow?id=371273ba52f1f5dc, https://usegalaxy.org/published/workflow?id=3d805d7e0f34c727, https://usegalaxy.org/published/workflow?id=3db51822f04f4ff7, https://usegalaxy.org/published/workflow?id=3ef08553982f6ffc, https://usegalaxy.org/published/workflow?id=44bcae0e352563f9, https://usegalaxy.org/published/workflow?id=450c2181f89e6b23, https://usegalaxy.org/published/workflow?id=49a07807fcea8158, https://usegalaxy.org/published/workflow?id=531d02f7213f9113, https://usegalaxy.org/published/workflow?id=6341c384ceaf47ed, https://usegalaxy.org/published/workflow?id=74049914e4a6c791, https://usegalaxy.org/published/workflow?id=768cee70d9aa8cc6, https://usegalaxy.org/published/workflow?id=79a282b2bf89c6ac, https://usegalaxy.org/published/workflow?id=7b8ee08ba291d231, https://usegalaxy.org/published/workflow?id=85f521f5c7351406, https://usegalaxy.org/published/workflow?id=88327cb2e0fe3c25, https://usegalaxy.org/published/workflow?id=88f8feaad0f615de, https://usegalaxy.org/published/workflow?id=903e35b62946ed76, https://usegalaxy.org/published/workflow?id=91a4daecbb97d03e, https://usegalaxy.org/published/workflow?id=987d5caea37794c8, https://usegalaxy.org/published/workflow?id=9aa6320de30e2675, https://usegalaxy.org/published/workflow?id=9f4c4038d1c519e2, https://usegalaxy.org/published/workflow?id=a253589432a44e5a, https://usegalaxy.org/published/workflow?id=a4a6d6846c1692f9, https://usegalaxy.org/published/workflow?id=afa89bb0e8966753, https://usegalaxy.org/published/workflow?id=b1b4fc510099d592, https://usegalaxy.org/published/workflow?id=b1cfa3c239ef2523, https://usegalaxy.org/published/workflow?id=bf79271a438ffa54, https://usegalaxy.org/published/workflow?id=bff8bc8d0059274f, https://usegalaxy.org/published/workflow?id=ca3f2d9554e9e1c8, https://usegalaxy.org/published/workflow?id=ce4d4397eb8a5298, https://usegalaxy.org/published/workflow?id=d5183b025d0e78dd, https://usegalaxy.org/published/workflow?id=e50e36a25bae863c, https://usegalaxy.org/published/workflow?id=f09033420c6267ab, https://usegalaxy.org/published/workflow?id=f18e6fa5270fcd37, https://usegalaxy.org/published/workflow?id=fa36d9b50e956917, https://usegalaxy.org/published/workflow?id=fb98ef955b3dbd4b, https://workflowhub.eu/workflows/1054?version=1, https://workflowhub.eu/workflows/1057?version=8, https://workflowhub.eu/workflows/1060?version=1, https://workflowhub.eu/workflows/1402?version=1, https://workflowhub.eu/workflows/1405?version=1, https://workflowhub.eu/workflows/1427?version=1, https://workflowhub.eu/workflows/1432?version=1, https://workflowhub.eu/workflows/1441?version=1, https://workflowhub.eu/workflows/1469?version=1, https://workflowhub.eu/workflows/1487?version=2, https://workflowhub.eu/workflows/1489?version=1, https://workflowhub.eu/workflows/1536?version=1, https://workflowhub.eu/workflows/1609?version=1, https://workflowhub.eu/workflows/1628?version=1, https://workflowhub.eu/workflows/1707?version=1, https://workflowhub.eu/workflows/625?version=23, https://workflowhub.eu/workflows/643?version=5 |
climate/climate-101, climate/fates, climate/pangeo, ecology/regionalGAM, galaxy-interface/workflow-reports, introduction/galaxy-intro-101-everyone, introduction/galaxy-reproduce, microbiome/metaplasmidome_query, microbiome/pathogen-detection-from-nanopore-foodborne-data, single-cell/bulk-deconvolution-evaluate, statistics/clustering_machinelearning, variant-analysis/baculovirus-isolate-variation |
|
ggplot2_heatmap2 |
ggplot2_heatmap2 |
heatmap.2 function from the R gplots package |
2019-02-10 |
https://github.com/cran/gplots |
3.2.0 |
r-gplots |
2.17.0 |
To update |
Visualization |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/heatmap2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/heatmap2 |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
5014 |
5657 |
49667 |
55385 |
6220 |
7526 |
67874 |
76806 |
752 |
792 |
8188 |
8619 |
230 |
230 |
2587 |
2587 |
143397 |
128316 |
14205 |
12216 |
https://dev.workflowhub.eu/workflows/1026?version=1, https://dev.workflowhub.eu/workflows/1240?version=1, https://dev.workflowhub.eu/workflows/1311?version=2, https://dev.workflowhub.eu/workflows/1326?version=3, https://usegalaxy.eu/published/workflow?id=17ad465d9515cd25, https://usegalaxy.eu/published/workflow?id=20ada53472782c9b, https://usegalaxy.eu/published/workflow?id=21dd4bd16579fc12, https://usegalaxy.eu/published/workflow?id=2f37c35ade97aa8d, https://usegalaxy.eu/published/workflow?id=511b023121b7c488, https://usegalaxy.eu/published/workflow?id=63964ba7d9edce74, https://usegalaxy.eu/published/workflow?id=67e20e3082d24fbd, https://usegalaxy.eu/published/workflow?id=68e8042f11d5a3fd, https://usegalaxy.eu/published/workflow?id=6fc2b9bea5b75a49, https://usegalaxy.eu/published/workflow?id=7d44ea091d437edf, https://usegalaxy.eu/published/workflow?id=81f1927bfe3ffea1, https://usegalaxy.eu/published/workflow?id=82ef590b5821805d, https://usegalaxy.eu/published/workflow?id=95c4d5549e820d88, https://usegalaxy.eu/published/workflow?id=9c7a218993788493, https://usegalaxy.eu/published/workflow?id=a65a17122d2234a8, https://usegalaxy.eu/published/workflow?id=a7dc6e0c43cb6d6d, https://usegalaxy.eu/published/workflow?id=a9469155eee12ff1, https://usegalaxy.eu/published/workflow?id=ca286c2fdc71e960, https://usegalaxy.eu/published/workflow?id=ccef778cfd9024d1, https://usegalaxy.eu/published/workflow?id=d6f7e86d52d43555, https://usegalaxy.eu/published/workflow?id=dfee2bd4e4600ad9, https://usegalaxy.eu/published/workflow?id=e7e26967cf6cb8d8, https://usegalaxy.eu/published/workflow?id=f58526da1fd68108, https://usegalaxy.eu/published/workflow?id=f78e16c669481efd, https://usegalaxy.eu/published/workflow?id=fe64d430d50faf0b, https://usegalaxy.org.au/published/workflow?id=04ab43fb3e7840ef, https://usegalaxy.org.au/published/workflow?id=1727d16fa4dec19c, https://usegalaxy.org.au/published/workflow?id=28705b86e0595ded, https://usegalaxy.org.au/published/workflow?id=2cef9a1633e0a067, https://usegalaxy.org.au/published/workflow?id=42305ed876d19d08, https://usegalaxy.org.au/published/workflow?id=5490661d0153962b, https://usegalaxy.org.au/published/workflow?id=71bad95f72c9f30d, https://usegalaxy.org.au/published/workflow?id=75113a1b41904d2a, https://usegalaxy.org.au/published/workflow?id=7ef245f5ae3b916d, https://usegalaxy.org.au/published/workflow?id=84a8eb379440656e, https://usegalaxy.org.au/published/workflow?id=85aede91db0122e4, https://usegalaxy.org.au/published/workflow?id=8eab5e2b2c683076, https://usegalaxy.org.au/published/workflow?id=8fb691706f47527a, https://usegalaxy.org.au/published/workflow?id=a9e59d38c6c710bc, https://usegalaxy.org.au/published/workflow?id=ae773dfaa074cb72, https://usegalaxy.org.au/published/workflow?id=e1fd89e7248b6661, https://usegalaxy.org.au/published/workflow?id=e4ddf33ee5b5e259, https://usegalaxy.org.au/published/workflow?id=f7fd24318c4bf949, https://usegalaxy.org/published/workflow?id=19fcce20ecaf2ef6, https://usegalaxy.org/published/workflow?id=25cdc47baba556c5, https://usegalaxy.org/published/workflow?id=40a65b5bc1dcc0b4, https://usegalaxy.org/published/workflow?id=4c840284d2984fa0, https://usegalaxy.org/published/workflow?id=667493d318b86b7d, https://usegalaxy.org/published/workflow?id=68832752b883c226, https://usegalaxy.org/published/workflow?id=abf1aec0f3d48d03, https://usegalaxy.org/published/workflow?id=dcc7c5fdef8780fd, https://workflowhub.eu/workflows/1201?version=4, https://workflowhub.eu/workflows/1426?version=1, https://workflowhub.eu/workflows/1708?version=1, https://workflowhub.eu/workflows/1713?version=1, https://workflowhub.eu/workflows/1718?version=1 |
proteomics/maxquant-msstats-dda-lfq, transcriptomics/ref-based, transcriptomics/rna-seq-analysis-clustering-viz, transcriptomics/rna-seq-viz-with-heatmap2 |
|
ggupset |
emc-ggupset |
Create Upset Plots with ggupset |
2022-12-17 |
https://github.com/const-ae/ggupset |
1.0 |
r-ggupset |
|
To update |
Graphics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ggupset |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ggupset |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
goenrichment |
goenrichment, goslimmer |
Performs GO Enrichment analysis. |
2018-12-28 |
https://github.com/DanFaria/GOEnrichment |
2.0.1 |
goenrichment |
2.0.1 |
Up-to-date |
Genome annotation |
Gene-set enrichment analysis |
Gene-set enrichment analysis |
Transcriptomics |
Transcriptomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/goenrichment |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/goenrichment |
goenrichment |
GOEnrichment |
GOEnrichment is a tool for performing GO enrichment analysis of gene sets, such as those obtained from RNA-seq or Microarray experiments, to help characterize them at the functional level. It is available in Galaxy Europe and as a stand-alone tool.GOEnrichment is flexible in that it allows the user to use any version of the Gene Ontology and any GO annotation file they desire. To enable the use of GO slims, it is accompanied by a sister tool GOSlimmer, which can convert annotation files from full GO to any specified GO slim.The tool features an optional graph clustering algorithm to reduce the redundancy in the set of enriched GO terms and simplify its output.It was developed by the BioData.pt / ELIXIR-PT team at the Instituto Gulbenkian de CiĂŞncia. |
|
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
702 |
789 |
5785 |
6602 |
1092 |
1092 |
8548 |
8548 |
221 |
221 |
1494 |
1494 |
4 |
5 |
38 |
43 |
16687 |
15865 |
2107 |
2019 |
https://dev.workflowhub.eu/workflows/1315?version=1, https://dev.workflowhub.eu/workflows/1365?version=1, https://usegalaxy.eu/published/workflow?id=5f053303601cc630, https://usegalaxy.eu/published/workflow?id=7136ce9f18c74853, https://usegalaxy.org.au/published/workflow?id=d04b26372b28e8ed, https://workflowhub.eu/workflows/1515?version=1, https://workflowhub.eu/workflows/1667?version=1 |
single-cell/GO-enrichment, transcriptomics/goenrichment |
|
goseq |
goseq |
goseq does selection-unbiased testing for category enrichment amongst differentially expressed (DE) genes for RNA-seq data |
2016-11-12 |
https://bioconductor.org/packages/release/bioc/html/goseq.html |
1.50.0 |
bioconductor-goseq |
1.58.0 |
To update |
Statistics, RNA, Micro-array Analysis |
Gene functional annotation |
Gene functional annotation |
RNA-Seq |
RNA-Seq |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/goseq |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/goseq |
goseq |
GOseq |
Detect Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
2962 |
3455 |
21986 |
24488 |
3320 |
3686 |
26126 |
28741 |
623 |
623 |
4529 |
4529 |
90 |
90 |
743 |
743 |
58501 |
53384 |
7854 |
6995 |
https://dev.workflowhub.eu/workflows/1316?version=1, https://dev.workflowhub.eu/workflows/1326?version=3, https://dev.workflowhub.eu/workflows/1332?version=1, https://usegalaxy.eu/published/workflow?id=032ad839dab7ae70, https://usegalaxy.eu/published/workflow?id=12bf85cdc8102bb5, https://usegalaxy.eu/published/workflow?id=20ada53472782c9b, https://usegalaxy.eu/published/workflow?id=63c91ea322cd2819, https://usegalaxy.eu/published/workflow?id=732fa536cdc70c96, https://usegalaxy.eu/published/workflow?id=9c7a218993788493, https://usegalaxy.eu/published/workflow?id=c1a6d11e1eab6a42, https://usegalaxy.eu/published/workflow?id=e7e26967cf6cb8d8, https://usegalaxy.eu/published/workflow?id=fa83e26e05418370, https://usegalaxy.org.au/published/workflow?id=4f0814ec9f9f8425, https://usegalaxy.org.au/published/workflow?id=5490661d0153962b, https://usegalaxy.org.au/published/workflow?id=71bad95f72c9f30d, https://usegalaxy.org.au/published/workflow?id=75113a1b41904d2a, https://usegalaxy.org.au/published/workflow?id=9f6e62f465589ca3, https://usegalaxy.org.au/published/workflow?id=e1fd89e7248b6661, https://usegalaxy.org/published/workflow?id=420a332da24fb9e9, https://usegalaxy.org/published/workflow?id=742120336d5ff997, https://workflowhub.eu/workflows/1194?version=1, https://workflowhub.eu/workflows/1684?version=1, https://workflowhub.eu/workflows/1699?version=1, https://workflowhub.eu/workflows/1708?version=1, https://workflowhub.eu/workflows/1713?version=1, https://workflowhub.eu/workflows/689?version=1 |
transcriptomics/minerva-pathways, transcriptomics/ref-based, transcriptomics/rna-seq-analysis-clustering-viz, transcriptomics/rna-seq-genes-to-pathways |
|
gprofiler |
gprofiler_convert, gprofiler_gost, gprofiler_orth, gprofiler_random, gprofiler_snpense |
functional enrichment analysis of gene lists, convertion between various types of namespaces, translation gene identifiers between organisms and more |
2019-10-30 |
https://biit.cs.ut.ee/gprofiler |
@TOOL_VERSION@+galaxy11 |
r-gprofiler2 |
|
To update |
Statistics, Web Services |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/gprofiler |
|
|
|
|
5 |
0 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
5 |
5 |
0 |
472 |
479 |
4173 |
4303 |
752 |
752 |
8156 |
8159 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
12462 |
12329 |
1231 |
1224 |
https://dev.workflowhub.eu/workflows/1365?version=1, https://usegalaxy.eu/published/workflow?id=1590085d315aa80e, https://usegalaxy.eu/published/workflow?id=1d2e17a4f71f2455, https://usegalaxy.eu/published/workflow?id=21dd4bd16579fc12, https://usegalaxy.eu/published/workflow?id=2a73d658446747de, https://usegalaxy.eu/published/workflow?id=2f37c35ade97aa8d, https://usegalaxy.eu/published/workflow?id=48fe9c4de045d414, https://usegalaxy.eu/published/workflow?id=5f053303601cc630, https://usegalaxy.eu/published/workflow?id=67e20e3082d24fbd, https://usegalaxy.eu/published/workflow?id=6fc2b9bea5b75a49, https://usegalaxy.eu/published/workflow?id=8bc1c3b9e665ea37, https://usegalaxy.eu/published/workflow?id=f28459c5b16549b7, https://usegalaxy.eu/published/workflow?id=fe64d430d50faf0b, https://usegalaxy.org/published/workflow?id=092be3cf6e40282c, https://usegalaxy.org/published/workflow?id=173ecc0c88090d0e, https://usegalaxy.org/published/workflow?id=68832752b883c226, https://usegalaxy.org/published/workflow?id=6d0a3f36d2736087, https://usegalaxy.org/published/workflow?id=734e08331f8f34b7, https://usegalaxy.org/published/workflow?id=b094b6e1e7d48416, https://usegalaxy.org/published/workflow?id=ddb737f2ad0589e8, https://usegalaxy.org/published/workflow?id=dec0cf06fa059e65, https://workflowhub.eu/workflows/1515?version=1 |
single-cell/GO-enrichment |
|
graphembed |
graphembed |
Compute a 2D embedding of a data matrix given supervised class information |
2019-12-10 |
https://github.com/fabriziocosta/GraphEmbed |
2.4 |
graph_embed |
2.4 |
Up-to-date |
Statistics, Graphics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/graphembed/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/graphembed |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
6 |
6 |
70 |
78 |
47 |
47 |
129 |
130 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
208 |
199 |
53 |
53 |
|
|
|
graphlan |
graphlan, graphlan_annotate |
GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees |
2017-03-03 |
https://github.com/biobakery/graphlan |
|
graphlan |
1.1.3 |
To update |
Metagenomics, Graphics, Phylogenetics |
Phylogenetic inference, Phylogenetic tree visualisation, Phylogenetic tree editing, Taxonomic classification |
Phylogenetic inference, Phylogenetic tree visualisation, Phylogenetic tree editing, Taxonomic classification |
Metagenomics, Phylogenetics, Phylogenomics, Cladistics |
Metagenomics, Phylogenetics, Phylogenomics, Cladistics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/graphlan/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/graphlan |
graphlan |
GraPhlAn |
GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees. GraPhlAn focuses on concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation. |
|
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
794 |
841 |
10837 |
12092 |
280 |
280 |
1575 |
1575 |
169 |
169 |
1250 |
1250 |
2 |
2 |
12 |
12 |
14929 |
13674 |
1292 |
1245 |
https://dev.workflowhub.eu/workflows/1088?version=1, https://usegalaxy.eu/published/workflow?id=05f5f040337786bf, https://usegalaxy.eu/published/workflow?id=096b75501c8e0888, https://usegalaxy.eu/published/workflow?id=19de5cbae7f48103, https://usegalaxy.eu/published/workflow?id=2cf09adb1ed6c3ec, https://usegalaxy.eu/published/workflow?id=4d32b1b3ac0a7161, https://usegalaxy.eu/published/workflow?id=4f21205e71cabd37, https://usegalaxy.eu/published/workflow?id=5f0faac42b0a5062, https://usegalaxy.eu/published/workflow?id=713a5485e2007f90, https://usegalaxy.eu/published/workflow?id=79b4ae4403772098, https://usegalaxy.eu/published/workflow?id=7ab70660e6235cf0, https://usegalaxy.eu/published/workflow?id=87cc0cd143a12c41, https://usegalaxy.eu/published/workflow?id=994e5ff1df7d6c9e, https://usegalaxy.eu/published/workflow?id=9cbba5de2cbeeb0f, https://usegalaxy.eu/published/workflow?id=a8f829deb69b30ab, https://usegalaxy.eu/published/workflow?id=b5f848dc8e96663c, https://usegalaxy.eu/published/workflow?id=c3aa516e78ca4191, https://usegalaxy.eu/published/workflow?id=d05c6f0f3205fbd2, https://usegalaxy.eu/published/workflow?id=dfc2c53ac3103eff, https://usegalaxy.eu/published/workflow?id=ec50dd6d56f50db1, https://usegalaxy.eu/published/workflow?id=ed0ad728cf21702b, https://usegalaxy.eu/published/workflow?id=fdca6c9d394986bf, https://usegalaxy.fr/published/workflow?id=09e8293456ee6d99, https://usegalaxy.fr/published/workflow?id=c4f6062e51d0f45e, https://workflowhub.eu/workflows/1451?version=2, https://workflowhub.eu/workflows/1466?version=2 |
microbiome/metatranscriptomics, microbiome/metatranscriptomics-short |
|
groot |
groot |
GROOT is a tool to type Antibiotic Resistance Genes (ARGs) in metagenomic samples |
2024-05-14 |
https://github.com/will-rowe/groot |
1.1.2 |
groot |
1.1.2 |
Up-to-date |
Metagenomics |
Antimicrobial resistance prediction |
Antimicrobial resistance prediction |
Metagenomics, Microbiology, Genomics |
Metagenomics, Microbiology |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/groot |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/groot |
groot |
GROOT |
Indexed variation graphs for efficient and accurate resistome profiling. |
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
4 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
28 |
28 |
32 |
32 |
5 |
5 |
|
|
|
gtdb_to_taxdump |
gtdb_to_taxdump |
Convert GTDB taxonomy to NCBI taxdump format |
2024-08-25 |
https://github.com/nick-youngblut/gtdb_to_taxdump |
0.1.9 |
gtdb_to_taxdump |
0.1.9 |
Up-to-date |
Metagenomics |
Data handling, Mapping, Generation |
Data handling, Mapping, Generation |
Computational biology |
Computational biology |
iuc |
https://github.com/nick-youngblut/gtdb_to_taxdump |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/gtdb_to_taxdump |
gtdb_to_taxdump |
gtdb_to_taxdump |
Tool with multiple functions. Main functions are to create a DIAMOND database from the GTDB taxonomy data or create a NCBI taxdump format out of this data. This tool can also create a mapping between the taxonomy classification between GTDB and NCBI. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
12 |
449 |
449 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
449 |
449 |
12 |
12 |
https://usegalaxy.eu/published/workflow?id=cf0159c14418525e, https://usegalaxy.eu/published/workflow?id=e4dabaf57668dbd1 |
|
|
gtdbtk |
gtdbtk_classify_wf |
GTDB-Tk is a software tool kit for assigning objective taxonomic classifications to bacterial and archaeal genomesbased on the Genome Database Taxonomy GTDB. It is designed to work with recent advances that allow hundreds orthousands of metagenome-assembled genomes (MAGs) to be obtained directly from environmental samples. It can alsobe applied to isolate and single-cell genomes. |
2022-12-13 |
https://github.com/Ecogenomics/GTDBTk |
2.4.1 |
gtdbtk |
2.4.1 |
Up-to-date |
Metagenomics |
Genome alignment, Taxonomic classification, Sequence assembly, Query and retrieval |
Genome alignment, Taxonomic classification, Sequence assembly, Query and retrieval |
Metagenomics, Taxonomy, Phylogenetics, Database management, Proteins |
Metagenomics, Taxonomy, Phylogenetics, Database management, Proteins |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/gtdbtk |
GTDB-Tk |
GTDB-Tk |
a toolkit to classify genomes with the Genome Taxonomy Database.GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes based on the Genome Database Taxonomy GTDB. It is designed to work with recent advances that allow hundreds or thousands of metagenome-assembled genomes (MAGs) to be obtained directly from environmental samples. It can also be applied to isolate and single-cell genomes. The GTDB-Tk is open source and released under the GNU General Public License (Version 3). |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
162 |
162 |
1318 |
1318 |
90 |
90 |
343 |
343 |
105 |
105 |
749 |
749 |
4 |
4 |
8 |
8 |
2418 |
2418 |
361 |
361 |
https://usegalaxy.eu/published/workflow?id=0563f58718be932d, https://usegalaxy.eu/published/workflow?id=17d2e76147fc940c, https://usegalaxy.eu/published/workflow?id=1e5f1d9a51032e44, https://usegalaxy.eu/published/workflow?id=3f6c7249ef71ae41, https://usegalaxy.eu/published/workflow?id=7ecd92cb382d8168, https://usegalaxy.eu/published/workflow?id=e4dabaf57668dbd1, https://usegalaxy.org/published/workflow?id=33d90e718ce500ef, https://usegalaxy.org/published/workflow?id=8d229c0f58a07ebe, https://workflowhub.eu/workflows/1352?version=3 |
|
|
gtftobed12 |
gtftobed12 |
Convert GTF files to BED12 format |
2018-05-17 |
http://genome-source.cse.ucsc.edu/gitweb/?p=kent.git;a=blob;f=src/userApps/README |
357 |
ucsc-gtftogenepred |
482 |
To update |
Convert Formats |
|
|
Sequence analysis |
Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/gtfToBed12 |
UCSC_Genome_Browser_Utilities |
UCSC Genome Browser Utilities |
Utilities for handling sequences and assemblies from the UCSC Genome Browser project. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
3604 |
4280 |
9080 |
10481 |
3613 |
3616 |
9194 |
9212 |
390 |
390 |
1789 |
1789 |
178 |
178 |
322 |
322 |
21804 |
20385 |
8464 |
7785 |
https://dev.workflowhub.eu/workflows/1324?version=3, https://dev.workflowhub.eu/workflows/1329?version=5, https://usegalaxy.eu/published/workflow?id=1f9a9a7998ef5ab3, https://usegalaxy.eu/published/workflow?id=20ada53472782c9b, https://usegalaxy.eu/published/workflow?id=47a0407867a90f95, https://usegalaxy.eu/published/workflow?id=985044b4b2c51425, https://usegalaxy.eu/published/workflow?id=9b025479fade745d, https://usegalaxy.eu/published/workflow?id=9c7a218993788493, https://usegalaxy.eu/published/workflow?id=a28c207730e7e13d, https://usegalaxy.eu/published/workflow?id=b7a3cbcd32734e8b, https://usegalaxy.eu/published/workflow?id=cc37667c2d1f9056, https://usegalaxy.eu/published/workflow?id=ccef778cfd9024d1, https://usegalaxy.org.au/published/workflow?id=6e1e24f9e0326930, https://usegalaxy.org.au/published/workflow?id=75113a1b41904d2a, https://usegalaxy.org.au/published/workflow?id=85aede91db0122e4, https://usegalaxy.org.au/published/workflow?id=a1b97364f84022cf, https://usegalaxy.org.au/published/workflow?id=a763e53653b10ce0, https://usegalaxy.org.au/published/workflow?id=ce7f6a1c824920e2, https://usegalaxy.org.au/published/workflow?id=e1fd89e7248b6661, https://usegalaxy.org/published/workflow?id=044c5ce43f2e1829, https://usegalaxy.org/published/workflow?id=2049d38325423cfe, https://usegalaxy.org/published/workflow?id=582f3de3971fc38c, https://usegalaxy.org/published/workflow?id=7022c4d9af725e5c, https://usegalaxy.org/published/workflow?id=8c4fcd4bd9d5a72d, https://usegalaxy.org/published/workflow?id=e33f6a058c5f57e5, https://workflowhub.eu/workflows/1688?version=1, https://workflowhub.eu/workflows/1715?version=1, https://workflowhub.eu/workflows/878?version=1 |
transcriptomics/differential-isoform-expression, transcriptomics/ref-based |
|
gubbins |
gubbins |
Gubbins - bacterial recombination detection |
2017-06-22 |
|
3.2.1 |
gubbins |
3.4.1 |
To update |
Sequence Analysis |
Genotyping, Phylogenetic inference, Ancestral reconstruction |
Genotyping, Phylogenetic inference, Ancestral reconstruction |
Phylogeny, Genotype and phenotype, Whole genome sequencing |
Phylogeny, Genotype and phenotype, Whole genome sequencing |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/gubbins |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/gubbins |
gubbins |
Gubbins |
Gubbins is a tool for rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences. |
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
350 |
365 |
3918 |
4131 |
246 |
246 |
3504 |
3504 |
245 |
301 |
1876 |
2618 |
0 |
0 |
0 |
0 |
10253 |
9298 |
912 |
841 |
|
|
|
gvcftools |
gvcftools_extract_variants |
gvcftools is a set of utilities to help create and analyze Genome VCF (gVCF) files.gVCF are VCF 4.1 files which follow a set of conventions for representing all sitesin the genome, further described at https://sites.google.com/site/gvcftools/home/about-gvcf. |
2016-12-29 |
https://github.com/sequencing/gvcftools |
0.1 |
gvcftools |
0.17.0 |
To update |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/gvcftools |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/gvcftools |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
gwastools |
gwastools_manhattan_plot |
|
2019-10-07 |
https://bioconductor.org/packages/release/bioc/html/GWASTools.html |
0.1.0 |
bioconductor-gwastools |
1.52.0 |
To update |
Visualization, Variant Analysis |
Deposition, Analysis, Annotation |
Deposition, Analysis, Annotation |
GWAS study |
GWAS study |
iuc |
|
https://github.com/galaxyproject/tools-iuc/tree/main/tools/gwastools |
gwastools |
GWASTools |
Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis. |
|
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
21 |
21 |
21 |
21 |
4 |
4 |
https://usegalaxy.fr/published/workflow?id=1ad87b99f0cb828c |
|
|
halfdeep |
halfdeep |
HalfDeep: Automated detection of intervals covered at half depth by sequenced reads. |
2024-11-27 |
https://github.com/makovalab-psu/HalfDeep |
0.1.0 |
halfdeep |
0.1.0 |
Up-to-date |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/halfdeep |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/halfdeep |
|
|
|
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
48 |
48 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
48 |
48 |
2 |
2 |
|
|
|
hamronization |
hamronize_summarize, hamronize_tool |
Convert AMR gene detection tool output to hAMRonization specification format. |
2021-02-02 |
https://github.com/pha4ge/hAMRonization |
1.1.4 |
hamronization |
1.1.9 |
To update |
Sequence Analysis |
Data handling, Antimicrobial resistance prediction, Parsing |
Antimicrobial resistance prediction, Parsing |
Public health and epidemiology, Microbiology, Bioinformatics |
Public health and epidemiology, Microbiology, Bioinformatics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/hamronization |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/hamronization |
hamronization |
hAMRonization |
Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure |
|
0 |
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
200 |
200 |
9456 |
9456 |
1 |
1 |
20 |
20 |
0 |
0 |
0 |
0 |
3 |
3 |
15 |
15 |
9491 |
9491 |
204 |
204 |
https://usegalaxy.eu/published/workflow?id=eb5ab8bc82569eee, https://workflowhub.eu/workflows/1189?version=2, https://workflowhub.eu/workflows/407?version=1, https://workflowhub.eu/workflows/470?version=1 |
|
|
hapcut2 |
hapcut2 |
Robust and accurate haplotype assembly for diverse sequencing technologies |
2022-10-19 |
https://github.com/vibansal/HapCUT2 |
1.3.4 |
hapcut2 |
1.3.4 |
Up-to-date |
Assembly |
Haplotype mapping, Variant classification |
Haplotype mapping, Variant classification |
|
|
galaxy-australia |
https://github.com/galaxyproject/tools-iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/hapcut2 |
hapcut2 |
HapCUT2 |
HapCUT2 is a maximum-likelihood-based tool for assembling haplotypes from DNA sequence reads, designed to "just work" with excellent speed and accuracy across a range of long- and short-read sequencing technologies.The output is in Haplotype block format described here: https://github.com/vibansal/HapCUT2/blob/master/outputformat.md |
|
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
123 |
123 |
0 |
0 |
0 |
0 |
123 |
123 |
4 |
4 |
|
|
|
hapog |
hapog |
Hapo-G - Haplotype-Aware Polishing of Genomes |
2022-09-16 |
https://github.com/institut-de-genomique/HAPO-G |
1.3.8 |
hapog |
1.3.8 |
Up-to-date |
Assembly |
Genome assembly, Optimisation and refinement |
Genome assembly, Optimisation and refinement |
Sequence assembly, Genomics |
Sequence assembly, Genomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/hapog |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/hapog |
hapog |
Hapo-G |
Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads. It capable of incorporating phasing information from high-quality reads (short or long-reads) to polish genome assemblies and in particular assemblies of diploid and heterozygous genomes. |
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
83 |
83 |
636 |
636 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
35 |
35 |
367 |
367 |
1003 |
1003 |
118 |
118 |
|
|
|
happy |
som.py |
A tool to perform comparisons only based on chromosome, position, and allele identity for comparison of somatic callsets. |
2022-01-25 |
https://github.com/Illumina/hap.py |
0.3.14 |
hap.py |
0.3.15 |
To update |
Variant Analysis |
Variant calling, Sequence analysis, Genotyping |
Variant calling, Sequence analysis, Genotyping |
Genomics, DNA polymorphism |
Genomics, DNA polymorphism |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/happy |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/happy |
hap.py |
hap.py |
This is a set of programs based on htslib to benchmark variant calls against gold standard truth datasets.To compare a VCF against a gold standard dataset, use the following commmand line to perform genotype-level haplotype comparison. |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
heinz |
heinz_bum, heinz, heinz_scoring, heinz_visualization |
An algorithm for identification of the optimal scoring subnetwork. |
2018-06-11 |
https://github.com/ls-cwi/heinz |
1.0 |
bioconductor-bionet |
1.66.0 |
To update |
Transcriptomics, Visualization, Statistics, Single Cell |
Pathway or network analysis |
Pathway or network analysis |
Genetics, Gene expression, Molecular interactions, pathways and networks |
Genetics, Gene expression, Molecular interactions, pathways and networks |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/heinz |
heinz |
Heinz |
Tool for single-species active module discovery. |
|
4 |
4 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
4 |
0 |
127 |
155 |
1201 |
1440 |
328 |
328 |
1623 |
1623 |
31 |
31 |
768 |
768 |
0 |
0 |
0 |
0 |
3831 |
3592 |
514 |
486 |
https://dev.workflowhub.eu/workflows/1303?version=1, https://usegalaxy.eu/published/workflow?id=12c80c5b5e2305d8, https://usegalaxy.org.au/published/workflow?id=6a161c87d19a543c, https://workflowhub.eu/workflows/1677?version=1 |
transcriptomics/network-analysis-with-heinz |
|
hgvsparser |
hgvsparser |
Parsing and building variant descriptor strings compliant with the HGVS standard |
2024-06-07 |
https://github.com/VariantEffect/hgvsParseR/tree/master |
0.1.0 |
r-base |
|
To update |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/hgvsparser/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/hgvsparser |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
6353 |
6353 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6353 |
6353 |
2 |
2 |
|
|
|
hicexplorer |
hicexplorer_chicaggregatestatistic, hicexplorer_chicdifferentialtest, hicexplorer_chicexportdata, hicexplorer_chicplotviewpoint, hicexplorer_chicqualitycontrol, hicexplorer_chicsignificantinteractions, hicexplorer_chicviewpoint, hicexplorer_chicviewpointbackgroundmodel, hicexplorer_hicadjustmatrix, hicexplorer_hicaggregatecontacts, hicexplorer_hicaverageregions, hicexplorer_hicbuildmatrix, hicexplorer_hicbuildmatrixmicroc, hicexplorer_hiccomparematrices, hicexplorer_hiccompartmentspolarization, hicexplorer_hicconvertformat, hicexplorer_hiccorrectmatrix, hicexplorer_hiccorrelate, hicexplorer_hicdetectloops, hicexplorer_hicdifferentialtad, hicexplorer_hicfindrestrictionsites, hicexplorer_hicfindtads, hicexplorer_hichyperoptDetectLoops, hicexplorer_hicinfo, hicexplorer_hicinterintratad, hicexplorer_hicmergedomains, hicexplorer_hicmergeloops, hicexplorer_hicmergematrixbins, hicexplorer_hicnormalize, hicexplorer_hicpca, hicexplorer_hicplotaverageregions, hicexplorer_hicplotdistvscounts, hicexplorer_hicplotmatrix, hicexplorer_hicplotsvl, hicexplorer_hicplotviewpoint, hicexplorer_hicquickqc, hicexplorer_hicsummatrices, hicexplorer_hictransform, hicexplorer_hicvalidatelocations |
HiCExplorer: Set of programs to process, analyze and visualize Hi-C data. |
2017-08-24 |
https://github.com/deeptools/HiCExplorer |
3.7.6 |
hicexplorer |
3.7.6 |
Up-to-date |
Sequence Analysis, Visualization |
|
|
|
|
bgruening |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/hicexplorer |
|
|
|
|
38 |
38 |
39 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
0 |
0 |
0 |
0 |
33 |
35 |
33 |
0 |
397 |
597 |
44944 |
71563 |
19 |
19 |
1516 |
1516 |
13 |
13 |
2806 |
2806 |
1 |
1 |
2 |
2 |
75887 |
49268 |
630 |
430 |
https://dev.workflowhub.eu/workflows/1181?version=2, https://usegalaxy.eu/published/workflow?id=2f053b615d9788bf, https://usegalaxy.eu/published/workflow?id=5cb54278075696ca, https://workflowhub.eu/workflows/1103?version=3, https://workflowhub.eu/workflows/1104?version=2, https://workflowhub.eu/workflows/1610?version=1 |
epigenetics/hicexplorer |
|
hicstuff |
hicstuff_pipeline |
A toolkit to generate and manipulate Hi-C matrices |
2022-11-25 |
https://github.com/koszullab/hicstuff |
3.2.4 |
hicstuff |
3.2.4 |
Up-to-date |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicstuff |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/hicstuff |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
hifiasm |
hifiasm |
A fast haplotype-resolved de novo assembler |
2024-07-11 |
https://github.com/chhylp123/hifiasm |
0.25.0 |
hifiasm |
0.25.0 |
Up-to-date |
Assembly |
|
|
|
|
bgruening |
https://github.com/bgruening/galaxytools/tree/master/tools/hifiasm |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/hifiasm |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
630 |
630 |
2073 |
2073 |
438 |
438 |
1556 |
1556 |
156 |
156 |
2960 |
2960 |
40 |
40 |
108 |
108 |
6697 |
6697 |
1264 |
1264 |
https://dev.workflowhub.eu/workflows/1435?version=1, https://dev.workflowhub.eu/workflows/584?version=1, https://dev.workflowhub.eu/workflows/585?version=1, https://dev.workflowhub.eu/workflows/586?version=1, https://usegalaxy.eu/published/workflow?id=002a51bdef00e14d, https://usegalaxy.eu/published/workflow?id=01fe4c590e608103, https://usegalaxy.eu/published/workflow?id=023a0ee62dd1f593, https://usegalaxy.eu/published/workflow?id=03be9d62e8e4a129, https://usegalaxy.eu/published/workflow?id=085c3a4c89d137b5, https://usegalaxy.eu/published/workflow?id=089e5e83b1de0511, https://usegalaxy.eu/published/workflow?id=1151052f4393852a, https://usegalaxy.eu/published/workflow?id=1483534f49b826bf, https://usegalaxy.eu/published/workflow?id=194a05d42687b524, https://usegalaxy.eu/published/workflow?id=19bb57f8cfa48bb9, https://usegalaxy.eu/published/workflow?id=1ac0a15758277730, https://usegalaxy.eu/published/workflow?id=1bb084f1bc102734, https://usegalaxy.eu/published/workflow?id=1da7ac8eaf891f39, https://usegalaxy.eu/published/workflow?id=1e02a7292e9974b1, https://usegalaxy.eu/published/workflow?id=1f2a1438e41188f2, https://usegalaxy.eu/published/workflow?id=21a3f72851f29925, https://usegalaxy.eu/published/workflow?id=2671a5f85b2cccfe, https://usegalaxy.eu/published/workflow?id=270b6f82efab28b2, https://usegalaxy.eu/published/workflow?id=2e418c5810012e5a, https://usegalaxy.eu/published/workflow?id=342a5df69951e3d7, https://usegalaxy.eu/published/workflow?id=379642036b6f5a66, https://usegalaxy.eu/published/workflow?id=3a3e2d50fe7a9ee3, https://usegalaxy.eu/published/workflow?id=3e255a5b7026d26e, https://usegalaxy.eu/published/workflow?id=3eb6663a66f8e69a, https://usegalaxy.eu/published/workflow?id=3f5414bb38b47fcf, https://usegalaxy.eu/published/workflow?id=416141b245073406, https://usegalaxy.eu/published/workflow?id=471eb8b4c54f897d, https://usegalaxy.eu/published/workflow?id=475ea16f943cc013, https://usegalaxy.eu/published/workflow?id=4856e3522b2ee059, https://usegalaxy.eu/published/workflow?id=497b82d3b92dc076, https://usegalaxy.eu/published/workflow?id=4c3a9b574f37eebb, https://usegalaxy.eu/published/workflow?id=4d41ee83fc0040d4, https://usegalaxy.eu/published/workflow?id=5115299e77df8104, https://usegalaxy.eu/published/workflow?id=54590ccd11ffbf65, https://usegalaxy.eu/published/workflow?id=57cc33ed64d71982, https://usegalaxy.eu/published/workflow?id=5ad406442ec21345, https://usegalaxy.eu/published/workflow?id=5e1906290f5b4d8a, https://usegalaxy.eu/published/workflow?id=6573f3b1606b7f09, https://usegalaxy.eu/published/workflow?id=69cdd404592535ec, https://usegalaxy.eu/published/workflow?id=71a6d128a09210f0, https://usegalaxy.eu/published/workflow?id=7337d15d121596da, https://usegalaxy.eu/published/workflow?id=79b5afb125e3c3da, https://usegalaxy.eu/published/workflow?id=83a1b8949d87e3da, https://usegalaxy.eu/published/workflow?id=847403b72dd346ff, https://usegalaxy.eu/published/workflow?id=8be366ad6a42408b, https://usegalaxy.eu/published/workflow?id=92760fc19ef120ce, https://usegalaxy.eu/published/workflow?id=92dafb3d1c06e074, https://usegalaxy.eu/published/workflow?id=95f420d8856bf725, https://usegalaxy.eu/published/workflow?id=9c0b67496dfe52b2, https://usegalaxy.eu/published/workflow?id=9f2d18f0d0896e8b, https://usegalaxy.eu/published/workflow?id=a6dd62ab4b9a0725, https://usegalaxy.eu/published/workflow?id=aa6dc57f5c67fb4b, https://usegalaxy.eu/published/workflow?id=ac6eb99f70d35999, https://usegalaxy.eu/published/workflow?id=ae74f60cd20d56bc, https://usegalaxy.eu/published/workflow?id=b211fceaecf41c9e, https://usegalaxy.eu/published/workflow?id=b4948afacccfefdb, https://usegalaxy.eu/published/workflow?id=b8baade87e733fce, https://usegalaxy.eu/published/workflow?id=bc87309a8763d0b4, https://usegalaxy.eu/published/workflow?id=bcf99cc0469db276, https://usegalaxy.eu/published/workflow?id=bef0a7d604f2ebef, https://usegalaxy.eu/published/workflow?id=c4c2e669b86cffbc, https://usegalaxy.eu/published/workflow?id=c508c00e81018dd8, https://usegalaxy.eu/published/workflow?id=caba6d3d7db648e9, https://usegalaxy.eu/published/workflow?id=d67299c34e63f3d9, https://usegalaxy.eu/published/workflow?id=dc27453c438577f6, https://usegalaxy.eu/published/workflow?id=de9cf573314f416c, https://usegalaxy.eu/published/workflow?id=e138640778b7414c, https://usegalaxy.eu/published/workflow?id=e7aebe58411d97ed, https://usegalaxy.eu/published/workflow?id=e8f9e1d911683b22, https://usegalaxy.eu/published/workflow?id=e935d2c8ffb52588, https://usegalaxy.eu/published/workflow?id=ec79f14ab91cd933, https://usegalaxy.eu/published/workflow?id=f1ca4289ee4f67bb, https://usegalaxy.eu/published/workflow?id=f38745208494d4ab, https://usegalaxy.eu/published/workflow?id=f578a097b4339025, https://usegalaxy.eu/published/workflow?id=f6a625946dea60fa, https://usegalaxy.eu/published/workflow?id=fb015e398373ea8a, https://usegalaxy.eu/published/workflow?id=fba1671d835b6dd3, https://usegalaxy.eu/published/workflow?id=fc25c1f8c6667c87, https://usegalaxy.eu/published/workflow?id=fd649ac4d4872c81, https://usegalaxy.org.au/published/workflow?id=02eebe3d909206ab, https://usegalaxy.org.au/published/workflow?id=044b6b475b4db27a, https://usegalaxy.org.au/published/workflow?id=08fac3b4c128e597, https://usegalaxy.org.au/published/workflow?id=0af0ea50f1237952, https://usegalaxy.org.au/published/workflow?id=0cc8c8875df6bccb, https://usegalaxy.org.au/published/workflow?id=10355b2680374a03, https://usegalaxy.org.au/published/workflow?id=1eb3e1452c672480, https://usegalaxy.org.au/published/workflow?id=2470cb61ba51288c, https://usegalaxy.org.au/published/workflow?id=2d45d7138d8715b4, https://usegalaxy.org.au/published/workflow?id=319e9d693fac8dce, https://usegalaxy.org.au/published/workflow?id=3604307ec2835628, https://usegalaxy.org.au/published/workflow?id=36604d0ab0dee988, https://usegalaxy.org.au/published/workflow?id=36f54eda8568355d, https://usegalaxy.org.au/published/workflow?id=371c9892d261cee2, https://usegalaxy.org.au/published/workflow?id=3df7f45b7b388f8c, https://usegalaxy.org.au/published/workflow?id=40666ceb68d101ac, https://usegalaxy.org.au/published/workflow?id=41795303a88d9e94, https://usegalaxy.org.au/published/workflow?id=4267bd1e4cfd1901, https://usegalaxy.org.au/published/workflow?id=434127690544d0e9, https://usegalaxy.org.au/published/workflow?id=51bad198f1fd1215, https://usegalaxy.org.au/published/workflow?id=5550585ffc3d8d0e, https://usegalaxy.org.au/published/workflow?id=5b0c0e34394afed1, https://usegalaxy.org.au/published/workflow?id=5f4f874e49515555, https://usegalaxy.org.au/published/workflow?id=60c0dec52cdca708, https://usegalaxy.org.au/published/workflow?id=63789b6f82172679, https://usegalaxy.org.au/published/workflow?id=68b2961117e62890, https://usegalaxy.org.au/published/workflow?id=6c27019d03dd49d8, https://usegalaxy.org.au/published/workflow?id=6c9129acb9d98afe, https://usegalaxy.org.au/published/workflow?id=8926e592f2e60863, https://usegalaxy.org.au/published/workflow?id=8a6233015db6dd24, https://usegalaxy.org.au/published/workflow?id=8bf8c9929249f37d, https://usegalaxy.org.au/published/workflow?id=8dd86497bc15d981, https://usegalaxy.org.au/published/workflow?id=8e8a5cce9f3f2f67, https://usegalaxy.org.au/published/workflow?id=91ee716be8bfd508, https://usegalaxy.org.au/published/workflow?id=9642aadb83c4f752, https://usegalaxy.org.au/published/workflow?id=970dc0d8bd74707f, https://usegalaxy.org.au/published/workflow?id=9804030358c3f844, https://usegalaxy.org.au/published/workflow?id=98d3def7da131b4c, https://usegalaxy.org.au/published/workflow?id=98f660971010d11d, https://usegalaxy.org.au/published/workflow?id=9e0bae0505ee7c07, https://usegalaxy.org.au/published/workflow?id=a02c102e179596cb, https://usegalaxy.org.au/published/workflow?id=a345bf84eb9bf6b2, https://usegalaxy.org.au/published/workflow?id=a525966251895f8a, https://usegalaxy.org.au/published/workflow?id=ad10cd704268dcf0, https://usegalaxy.org.au/published/workflow?id=afab89bc468da8b3, https://usegalaxy.org.au/published/workflow?id=b19fa49405117317, https://usegalaxy.org.au/published/workflow?id=b1f45d2f8d8343e9, https://usegalaxy.org.au/published/workflow?id=b5131e3a0ef2676e, https://usegalaxy.org.au/published/workflow?id=b9faf6a3f48fc11b, https://usegalaxy.org.au/published/workflow?id=be96bb47b6d6435a, https://usegalaxy.org.au/published/workflow?id=c6a71573a299eb3a, https://usegalaxy.org.au/published/workflow?id=c7e1f666a3366823, https://usegalaxy.org.au/published/workflow?id=c7f2d6490128dc3c, https://usegalaxy.org.au/published/workflow?id=d298edda13b382e7, https://usegalaxy.org.au/published/workflow?id=d42d7b1aa47e870f, https://usegalaxy.org.au/published/workflow?id=d7f3fc810261e419, https://usegalaxy.org.au/published/workflow?id=d9c181fd954b629a, https://usegalaxy.org.au/published/workflow?id=df4e186069552649, https://usegalaxy.org.au/published/workflow?id=e031af90daa2cadf, https://usegalaxy.org.au/published/workflow?id=e28ca83f14f4ede5, https://usegalaxy.org.au/published/workflow?id=ea687c5613fcce27, https://usegalaxy.org.au/published/workflow?id=f7a866159f1eaecf, https://usegalaxy.org.au/published/workflow?id=f83a3cda33131fb8, https://usegalaxy.org.au/published/workflow?id=fa37223950a91f34, https://usegalaxy.org.au/published/workflow?id=fe1e7fa0bc437ed8, https://usegalaxy.org.au/published/workflow?id=fff2e49bc90e38ca, https://usegalaxy.org/published/workflow?id=07e873a6d75dfe9f, https://usegalaxy.org/published/workflow?id=0993daadf2db5f51, https://usegalaxy.org/published/workflow?id=1245e9435cbc3985, https://usegalaxy.org/published/workflow?id=137d0f05a71d7acb, https://usegalaxy.org/published/workflow?id=1d24cc949c52e475, https://usegalaxy.org/published/workflow?id=1eec2586d1ff908b, https://usegalaxy.org/published/workflow?id=25a9f0693ff6d327, https://usegalaxy.org/published/workflow?id=283bc048cc7a80f5, https://usegalaxy.org/published/workflow?id=284150bb1f296378, https://usegalaxy.org/published/workflow?id=2b41752b8518a87b, https://usegalaxy.org/published/workflow?id=2c5c627c08563398, https://usegalaxy.org/published/workflow?id=2d994cc02ec05ede, https://usegalaxy.org/published/workflow?id=305fb9f84b053713, https://usegalaxy.org/published/workflow?id=31a6145b0832fa48, https://usegalaxy.org/published/workflow?id=3ba73f679558017c, https://usegalaxy.org/published/workflow?id=3db4eb1ecb588d44, https://usegalaxy.org/published/workflow?id=3f7550d5d2bf0b96, https://usegalaxy.org/published/workflow?id=408c799822cbf6ea, https://usegalaxy.org/published/workflow?id=435f0340bf00c940, https://usegalaxy.org/published/workflow?id=44781c8b0bd667ed, https://usegalaxy.org/published/workflow?id=484f8fcf21d67376, https://usegalaxy.org/published/workflow?id=498a8c6329ca5728, https://usegalaxy.org/published/workflow?id=4a0ad87aa5aa558a, https://usegalaxy.org/published/workflow?id=4bf73376661baafd, https://usegalaxy.org/published/workflow?id=57e6345fda3e2682, https://usegalaxy.org/published/workflow?id=597c4d54f8a8ebe7, https://usegalaxy.org/published/workflow?id=5dfec2a3ae5fa765, https://usegalaxy.org/published/workflow?id=653d553ac2fa51c8, https://usegalaxy.org/published/workflow?id=683e725f672b7d9b, https://usegalaxy.org/published/workflow?id=6b511b47176893e3, https://usegalaxy.org/published/workflow?id=7072731b51e16923, https://usegalaxy.org/published/workflow?id=7dba74c915f63dc1, https://usegalaxy.org/published/workflow?id=7f6900852a81d121, https://usegalaxy.org/published/workflow?id=81f1f0fd6d9235fd, https://usegalaxy.org/published/workflow?id=864da6858d34df08, https://usegalaxy.org/published/workflow?id=8cfbaa14cff5a633, https://usegalaxy.org/published/workflow?id=8d605fbd33003d26, https://usegalaxy.org/published/workflow?id=90f5b512997c70f8, https://usegalaxy.org/published/workflow?id=932b3bc10186f73e, https://usegalaxy.org/published/workflow?id=936ed7447c8e0a2d, https://usegalaxy.org/published/workflow?id=93c1fef4472aa7a8, https://usegalaxy.org/published/workflow?id=961dac8100c6c70c, https://usegalaxy.org/published/workflow?id=9938a81fb6911412, https://usegalaxy.org/published/workflow?id=9ddfdc9d6cacea88, https://usegalaxy.org/published/workflow?id=a8e0f77cd6ef49f9, https://usegalaxy.org/published/workflow?id=ab0be4897d5355ac, https://usegalaxy.org/published/workflow?id=acada5044d64a30a, https://usegalaxy.org/published/workflow?id=b661fb850c4b4b01, https://usegalaxy.org/published/workflow?id=b6d535f210efa18e, https://usegalaxy.org/published/workflow?id=bb1cb6abfe84a646, https://usegalaxy.org/published/workflow?id=bbc894a79eb0e769, https://usegalaxy.org/published/workflow?id=bd6bfd338ffb9637, https://usegalaxy.org/published/workflow?id=bfd2e7e63d3e6856, https://usegalaxy.org/published/workflow?id=bfef75672b9c3ea4, https://usegalaxy.org/published/workflow?id=c0a9a2d53b8660de, https://usegalaxy.org/published/workflow?id=c983ea8a32662cd6, https://usegalaxy.org/published/workflow?id=d08135fa13d1745e, https://usegalaxy.org/published/workflow?id=d3f35215e6f45d79, https://usegalaxy.org/published/workflow?id=daaded719dcfd53b, https://usegalaxy.org/published/workflow?id=dae5d5e5df5c4dd7, https://usegalaxy.org/published/workflow?id=e4dd39237df58884, https://usegalaxy.org/published/workflow?id=f1a54b10d4afce8f, https://usegalaxy.org/published/workflow?id=fa26fd51caea53c7, https://usegalaxy.org/published/workflow?id=fc7b14aafa0b421e, https://usegalaxy.org/published/workflow?id=fd40e50c9f1545ce, https://workflowhub.eu/workflows/1162?version=2, https://workflowhub.eu/workflows/221?version=3, https://workflowhub.eu/workflows/605?version=1, https://workflowhub.eu/workflows/612?version=23, https://workflowhub.eu/workflows/641?version=25, https://workflowhub.eu/workflows/642?version=23 |
assembly/hifi-assembly, assembly/vgp_genome_assembly |
|
hifiasm_meta |
hifiasm_meta |
A hifiasm fork for metagenome assembly using Hifi reads. |
2023-01-18 |
https://github.com/xfengnefx/hifiasm-meta |
0.3.1 |
hifiasm_meta |
hamtv0.3.1 |
To update |
Metagenomics |
Sequence assembly |
Sequence assembly |
Sequence assembly, Metagenomics |
Sequence assembly, Metagenomics |
galaxy-australia |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/hifiasm_meta |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/hifiasm_meta |
hifiasm-meta |
Hifiasm-meta |
Hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads. |
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
28 |
28 |
170 |
170 |
0 |
0 |
0 |
0 |
14 |
14 |
287 |
287 |
0 |
0 |
0 |
0 |
457 |
457 |
42 |
42 |
|
|
|
hisat2 |
hisat2 |
HISAT2 is a fast and sensitive spliced alignment program. |
2015-09-29 |
http://ccb.jhu.edu/software/hisat2/ |
2.2.1 |
hisat2 |
2.2.1 |
Up-to-date |
Assembly |
Sequence alignment |
Sequence alignment |
RNA-seq |
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/hisat2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/hisat2 |
hisat2 |
HISAT2 |
Alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as to a single reference genome). |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
11045 |
12103 |
382199 |
408162 |
28038 |
36924 |
715633 |
961962 |
5368 |
5997 |
88949 |
100616 |
1039 |
1039 |
33708 |
33729 |
1504469 |
1220489 |
56063 |
45490 |
https://dev.workflowhub.eu/workflows/1001?version=1, https://dev.workflowhub.eu/workflows/1042?version=1, https://dev.workflowhub.eu/workflows/1201?version=2, https://dev.workflowhub.eu/workflows/1281?version=1, https://dev.workflowhub.eu/workflows/1295?version=1, https://dev.workflowhub.eu/workflows/1319?version=2, https://dev.workflowhub.eu/workflows/1327?version=1, https://dev.workflowhub.eu/workflows/1386?version=1, https://dev.workflowhub.eu/workflows/1398?version=1, https://usegalaxy.eu/published/workflow?id=0de150b19102cb7e, https://usegalaxy.eu/published/workflow?id=135e8888872e8413, https://usegalaxy.eu/published/workflow?id=1502fd3fa90d32d8, https://usegalaxy.eu/published/workflow?id=17916f0229e3c868, https://usegalaxy.eu/published/workflow?id=17ad465d9515cd25, https://usegalaxy.eu/published/workflow?id=1842a61fe5f6965f, https://usegalaxy.eu/published/workflow?id=18c9095fbf5c4517, https://usegalaxy.eu/published/workflow?id=1b49eda539658e53, https://usegalaxy.eu/published/workflow?id=1bc7b5eabea972fd, https://usegalaxy.eu/published/workflow?id=1be0c4adf13cf368, https://usegalaxy.eu/published/workflow?id=1c3e7b3af6ff79fa, https://usegalaxy.eu/published/workflow?id=1ccc0c9e1c6821bb, https://usegalaxy.eu/published/workflow?id=1cd85fe90839c10d, https://usegalaxy.eu/published/workflow?id=1fe02012c96b731f, https://usegalaxy.eu/published/workflow?id=212c213f1d8e0154, https://usegalaxy.eu/published/workflow?id=2287afbf248d9c89, https://usegalaxy.eu/published/workflow?id=26185e8fa5a9b988, https://usegalaxy.eu/published/workflow?id=29a855d928337f8f, https://usegalaxy.eu/published/workflow?id=2d64d6571e01809d, https://usegalaxy.eu/published/workflow?id=300301c23327f797, https://usegalaxy.eu/published/workflow?id=3069c17b52decab4, https://usegalaxy.eu/published/workflow?id=318be2b30bf7884c, https://usegalaxy.eu/published/workflow?id=31d9eb6a120411d6, https://usegalaxy.eu/published/workflow?id=3550384e7c062a60, https://usegalaxy.eu/published/workflow?id=39876e9c04aad543, https://usegalaxy.eu/published/workflow?id=39afbf843b5513bf, https://usegalaxy.eu/published/workflow?id=3a8150c81b90a3a7, https://usegalaxy.eu/published/workflow?id=3d5b39e454df584b, https://usegalaxy.eu/published/workflow?id=47a0407867a90f95, https://usegalaxy.eu/published/workflow?id=487929c7b5be8dc3, https://usegalaxy.eu/published/workflow?id=4dd7f6e1c1e7f96a, https://usegalaxy.eu/published/workflow?id=50758631a0e81a7a, https://usegalaxy.eu/published/workflow?id=52cafb62f5bf6e25, https://usegalaxy.eu/published/workflow?id=534b81d48df6b507, https://usegalaxy.eu/published/workflow?id=535f777e5e42e98c, https://usegalaxy.eu/published/workflow?id=54467870b7c635f2, https://usegalaxy.eu/published/workflow?id=56868483be18f1a1, https://usegalaxy.eu/published/workflow?id=5aba0f20d994b1a4, https://usegalaxy.eu/published/workflow?id=5b00ef046439d757, https://usegalaxy.eu/published/workflow?id=60a45de522b8b695, https://usegalaxy.eu/published/workflow?id=60e4d0db3164f037, https://usegalaxy.eu/published/workflow?id=61e592bafd9d2b58, https://usegalaxy.eu/published/workflow?id=625aafb9cf16b03f, https://usegalaxy.eu/published/workflow?id=63749bd3045ccd4a, https://usegalaxy.eu/published/workflow?id=63964ba7d9edce74, https://usegalaxy.eu/published/workflow?id=68e8042f11d5a3fd, https://usegalaxy.eu/published/workflow?id=6d87481be47902e1, https://usegalaxy.eu/published/workflow?id=6e6cf59bfeb938bf, https://usegalaxy.eu/published/workflow?id=71a9224fa6f3da9d, https://usegalaxy.eu/published/workflow?id=733650962d379da2, https://usegalaxy.eu/published/workflow?id=762c64a9f588a420, https://usegalaxy.eu/published/workflow?id=766ebba7a2aee494, https://usegalaxy.eu/published/workflow?id=7734928ebc0a2654, https://usegalaxy.eu/published/workflow?id=7baae0775071c7ec, https://usegalaxy.eu/published/workflow?id=7c9b182da21748c7, https://usegalaxy.eu/published/workflow?id=82ef590b5821805d, https://usegalaxy.eu/published/workflow?id=88b382a6f56a6329, https://usegalaxy.eu/published/workflow?id=8b1e2fe9f4a07de0, https://usegalaxy.eu/published/workflow?id=910570a2caafe462, https://usegalaxy.eu/published/workflow?id=9141c6449595c6a1, https://usegalaxy.eu/published/workflow?id=927d24dcde139b9c, https://usegalaxy.eu/published/workflow?id=98d4adf5774e274e, https://usegalaxy.eu/published/workflow?id=9a1d17c12b139bda, https://usegalaxy.eu/published/workflow?id=9a60ecf98d4f8134, https://usegalaxy.eu/published/workflow?id=9e01e24c5e749365, https://usegalaxy.eu/published/workflow?id=9e31c51911987687, https://usegalaxy.eu/published/workflow?id=a2f36d4dd48d8ec2, https://usegalaxy.eu/published/workflow?id=a35e0c2fcba4e95f, https://usegalaxy.eu/published/workflow?id=a6c666f3028ea440, https://usegalaxy.eu/published/workflow?id=a72d2667a53830f7, https://usegalaxy.eu/published/workflow?id=a7638e7f908fd90d, https://usegalaxy.eu/published/workflow?id=ab6e6ffaaebab45b, https://usegalaxy.eu/published/workflow?id=ab8924d78fa5ef8f, https://usegalaxy.eu/published/workflow?id=ae1ca223d6667070, https://usegalaxy.eu/published/workflow?id=b30c294a094c90bc, https://usegalaxy.eu/published/workflow?id=b41ff6d8fb5a0878, https://usegalaxy.eu/published/workflow?id=b6eb5fe7e37f680a, https://usegalaxy.eu/published/workflow?id=b801e745205892f5, https://usegalaxy.eu/published/workflow?id=bbe2a1615c8faaae, https://usegalaxy.eu/published/workflow?id=bc32937d505135ab, https://usegalaxy.eu/published/workflow?id=bcb8a8c5bff790ab, https://usegalaxy.eu/published/workflow?id=bebcbd6f0ffa55c5, https://usegalaxy.eu/published/workflow?id=bfb762c96328e3c1, https://usegalaxy.eu/published/workflow?id=c885eaabae612d6d, https://usegalaxy.eu/published/workflow?id=cae527ce845e770e, https://usegalaxy.eu/published/workflow?id=cbc16cb5db98ab21, https://usegalaxy.eu/published/workflow?id=cc37667c2d1f9056, https://usegalaxy.eu/published/workflow?id=d086340422009ba9, https://usegalaxy.eu/published/workflow?id=d1338e2b4002a364, https://usegalaxy.eu/published/workflow?id=d3dfe7ba11508c72, https://usegalaxy.eu/published/workflow?id=d41b52a15ba56f54, https://usegalaxy.eu/published/workflow?id=d503dee6f9b35a18, https://usegalaxy.eu/published/workflow?id=d5333903ba947adf, https://usegalaxy.eu/published/workflow?id=d72edb9f8c529f47, https://usegalaxy.eu/published/workflow?id=d9f8c5d575da02b1, https://usegalaxy.eu/published/workflow?id=daf47855afa73de8, https://usegalaxy.eu/published/workflow?id=dbcf7af09e036754, https://usegalaxy.eu/published/workflow?id=de3eafbcf42c75bb, https://usegalaxy.eu/published/workflow?id=df3bf1700d3faefc, https://usegalaxy.eu/published/workflow?id=e62b659a5da9734e, https://usegalaxy.eu/published/workflow?id=e6c5fb1d37d29ec0, https://usegalaxy.eu/published/workflow?id=e8202b7b6338005d, https://usegalaxy.eu/published/workflow?id=e85c9385870aadcc, https://usegalaxy.eu/published/workflow?id=eb8168bc01249596, https://usegalaxy.eu/published/workflow?id=ebaa33538e7ff300, https://usegalaxy.eu/published/workflow?id=ecab5b2c3ff3df9d, https://usegalaxy.eu/published/workflow?id=f026c4b8341ff94c, https://usegalaxy.eu/published/workflow?id=f0ac222d3e965ab0, https://usegalaxy.eu/published/workflow?id=f12fb4a95954c448, https://usegalaxy.eu/published/workflow?id=fb18c5d14acb1b36, https://usegalaxy.eu/published/workflow?id=fe8a1a970fd0d4cd, https://usegalaxy.fr/published/workflow?id=0f6714dbdb90b6aa, https://usegalaxy.fr/published/workflow?id=334189184455d9a2, https://usegalaxy.fr/published/workflow?id=5d83e0886f2a7465, https://usegalaxy.fr/published/workflow?id=5e49933a687c2b46, https://usegalaxy.fr/published/workflow?id=6d2945d35fa956c8, https://usegalaxy.fr/published/workflow?id=72b531d980acaa6c, https://usegalaxy.fr/published/workflow?id=74b4d11c07f7f0a4, https://usegalaxy.fr/published/workflow?id=826cffb2458e4067, https://usegalaxy.fr/published/workflow?id=aa96487c5a1b29bf, https://usegalaxy.fr/published/workflow?id=e0bad0b97ee71577, https://usegalaxy.org.au/published/workflow?id=000cdc969e9f0886, https://usegalaxy.org.au/published/workflow?id=01997cb92a2ce2d5, https://usegalaxy.org.au/published/workflow?id=0220e60c66de9065, https://usegalaxy.org.au/published/workflow?id=02b8d033d9b1fa05, https://usegalaxy.org.au/published/workflow?id=046a1c600a6b77c2, https://usegalaxy.org.au/published/workflow?id=05950987aa2eba5b, https://usegalaxy.org.au/published/workflow?id=05b17b9d70c1db8b, https://usegalaxy.org.au/published/workflow?id=0614f24ebeb680de, https://usegalaxy.org.au/published/workflow?id=068f85b8b137bfd7, https://usegalaxy.org.au/published/workflow?id=07c97b9e59c0218f, https://usegalaxy.org.au/published/workflow?id=0c567180448d8774, https://usegalaxy.org.au/published/workflow?id=0cfc1408fd9ea4e7, https://usegalaxy.org.au/published/workflow?id=0d1db28665d19bda, https://usegalaxy.org.au/published/workflow?id=0ebaaecf61dfc921, https://usegalaxy.org.au/published/workflow?id=0fc7c14c4d1ac8f5, https://usegalaxy.org.au/published/workflow?id=10acf4f497172400, https://usegalaxy.org.au/published/workflow?id=114fb9589bb9db92, https://usegalaxy.org.au/published/workflow?id=14184bc2580a131f, https://usegalaxy.org.au/published/workflow?id=157e7614ae18849b, https://usegalaxy.org.au/published/workflow?id=16a2c2e8b3c1ffe6, https://usegalaxy.org.au/published/workflow?id=19315e6573c58239, https://usegalaxy.org.au/published/workflow?id=1ab66d382630afa7, https://usegalaxy.org.au/published/workflow?id=1c886f008a36b0b8, https://usegalaxy.org.au/published/workflow?id=20e5e6b233ffb951, https://usegalaxy.org.au/published/workflow?id=210ca013cc1cf185, https://usegalaxy.org.au/published/workflow?id=25ac9b4f2e39af97, https://usegalaxy.org.au/published/workflow?id=2999a1891ffe201b, https://usegalaxy.org.au/published/workflow?id=2a0046582f5f15a1, https://usegalaxy.org.au/published/workflow?id=2c58509f80897972, https://usegalaxy.org.au/published/workflow?id=2f7c0e3221cbca2f, https://usegalaxy.org.au/published/workflow?id=301fdb29c513ffbe, https://usegalaxy.org.au/published/workflow?id=30b2cd025e0300da, https://usegalaxy.org.au/published/workflow?id=31449596b22f81f4, https://usegalaxy.org.au/published/workflow?id=35384818ee1cbac2, https://usegalaxy.org.au/published/workflow?id=374311292d72c9f9, https://usegalaxy.org.au/published/workflow?id=383ce49fa7a367e9, https://usegalaxy.org.au/published/workflow?id=39d56981a6854d82, https://usegalaxy.org.au/published/workflow?id=3bc45aaed5da1058, https://usegalaxy.org.au/published/workflow?id=3c727d5cd349a846, https://usegalaxy.org.au/published/workflow?id=3ce9dc804780e4a1, https://usegalaxy.org.au/published/workflow?id=3ef07022656067b1, https://usegalaxy.org.au/published/workflow?id=410d0d19b6589c78, https://usegalaxy.org.au/published/workflow?id=421adea2f259ec26, https://usegalaxy.org.au/published/workflow?id=45c8789533c45abf, https://usegalaxy.org.au/published/workflow?id=4e096a68187ce652, https://usegalaxy.org.au/published/workflow?id=4efed79608f85604, https://usegalaxy.org.au/published/workflow?id=4f2818b6620037af, https://usegalaxy.org.au/published/workflow?id=4f562265cbb14cd6, https://usegalaxy.org.au/published/workflow?id=525612313de7591e, https://usegalaxy.org.au/published/workflow?id=53010c2f1f207429, https://usegalaxy.org.au/published/workflow?id=5314a7a4732a0ef1, https://usegalaxy.org.au/published/workflow?id=544cb12a16f283b8, https://usegalaxy.org.au/published/workflow?id=55c4d97a08a5ca09, https://usegalaxy.org.au/published/workflow?id=56599572e0364e2a, https://usegalaxy.org.au/published/workflow?id=5878a54446a26449, https://usegalaxy.org.au/published/workflow?id=5926a7669eabb1c6, https://usegalaxy.org.au/published/workflow?id=5a4e49ef8693d7c4, https://usegalaxy.org.au/published/workflow?id=5be983b903469f07, https://usegalaxy.org.au/published/workflow?id=5cbee52cf03b6f9a, https://usegalaxy.org.au/published/workflow?id=5ce00d3eab862f4e, https://usegalaxy.org.au/published/workflow?id=5ea74382fb77eb10, https://usegalaxy.org.au/published/workflow?id=608f3ad8f485e7a8, https://usegalaxy.org.au/published/workflow?id=6204bbcfe56931eb, https://usegalaxy.org.au/published/workflow?id=625f3c52832b0591, https://usegalaxy.org.au/published/workflow?id=6448b82959076a29, https://usegalaxy.org.au/published/workflow?id=6469ade8f6f7c718, https://usegalaxy.org.au/published/workflow?id=67191ea9fe977e08, https://usegalaxy.org.au/published/workflow?id=677ef3322366c953, https://usegalaxy.org.au/published/workflow?id=69233fb6edfcdde9, https://usegalaxy.org.au/published/workflow?id=6b34c95a247d15e3, https://usegalaxy.org.au/published/workflow?id=6cdbcd1f667d0f16, https://usegalaxy.org.au/published/workflow?id=6f0801fecbba5d3f, https://usegalaxy.org.au/published/workflow?id=723513b09d6690b8, https://usegalaxy.org.au/published/workflow?id=73ff1aa9acc0ad2a, https://usegalaxy.org.au/published/workflow?id=74186b006665daf8, https://usegalaxy.org.au/published/workflow?id=76323f103844f75b, https://usegalaxy.org.au/published/workflow?id=79522a1f7b0c53cb, https://usegalaxy.org.au/published/workflow?id=7c866ed4a3552d0d, https://usegalaxy.org.au/published/workflow?id=7cd1acb1da823cdc, https://usegalaxy.org.au/published/workflow?id=7cd4fcc8e06ce4fd, https://usegalaxy.org.au/published/workflow?id=7ea616c652d08fb6, https://usegalaxy.org.au/published/workflow?id=7ef245f5ae3b916d, https://usegalaxy.org.au/published/workflow?id=7febc6ac6f106e57, https://usegalaxy.org.au/published/workflow?id=811bbada546850bd, https://usegalaxy.org.au/published/workflow?id=83680c1c6dffb05b, https://usegalaxy.org.au/published/workflow?id=83a535840b388980, https://usegalaxy.org.au/published/workflow?id=8483ae422665a6c1, https://usegalaxy.org.au/published/workflow?id=8483e8d3e8d0ddc9, https://usegalaxy.org.au/published/workflow?id=8597166abda0a375, https://usegalaxy.org.au/published/workflow?id=863eee1b041b6c58, https://usegalaxy.org.au/published/workflow?id=879d4fb110a61f7a, https://usegalaxy.org.au/published/workflow?id=88c0d875eea2ee49, https://usegalaxy.org.au/published/workflow?id=897dfa78c3b25356, https://usegalaxy.org.au/published/workflow?id=8b8a5b50f2edc72c, https://usegalaxy.org.au/published/workflow?id=8c40b4a911517cc5, https://usegalaxy.org.au/published/workflow?id=8cab31db0bd3ff52, https://usegalaxy.org.au/published/workflow?id=8d196c8c62530dc0, https://usegalaxy.org.au/published/workflow?id=8d6010d07cc2e170, https://usegalaxy.org.au/published/workflow?id=91cfd96f697ba034, https://usegalaxy.org.au/published/workflow?id=925c167abd5610ae, https://usegalaxy.org.au/published/workflow?id=95a9070469a895c3, https://usegalaxy.org.au/published/workflow?id=95efb414f5984735, https://usegalaxy.org.au/published/workflow?id=975ddb0eb436f1fd, https://usegalaxy.org.au/published/workflow?id=97628b0604d5ec77, https://usegalaxy.org.au/published/workflow?id=978953f492b2b914, https://usegalaxy.org.au/published/workflow?id=981d7b02416b7734, https://usegalaxy.org.au/published/workflow?id=9898348d95033af2, https://usegalaxy.org.au/published/workflow?id=9988bc2402f32dc1, https://usegalaxy.org.au/published/workflow?id=9b1afa59c087eacd, https://usegalaxy.org.au/published/workflow?id=9cf3860659285656, https://usegalaxy.org.au/published/workflow?id=9df67170c9260539, https://usegalaxy.org.au/published/workflow?id=9e8d9b7055b7c863, https://usegalaxy.org.au/published/workflow?id=9ec9fe2715d7cfdc, https://usegalaxy.org.au/published/workflow?id=a1c59e9f5c7327d2, https://usegalaxy.org.au/published/workflow?id=a35e5a238a70176a, https://usegalaxy.org.au/published/workflow?id=a69db7f914c06407, https://usegalaxy.org.au/published/workflow?id=a7346c25dfdf2e3e, https://usegalaxy.org.au/published/workflow?id=a7726d18d2a5fcf2, https://usegalaxy.org.au/published/workflow?id=a7a30d970584f9ac, https://usegalaxy.org.au/published/workflow?id=a7d1cf2bb636e695, https://usegalaxy.org.au/published/workflow?id=a9fa6101f1fb13e2, https://usegalaxy.org.au/published/workflow?id=aa94c77b720a2810, https://usegalaxy.org.au/published/workflow?id=aaaf580eb00459b6, https://usegalaxy.org.au/published/workflow?id=aae07f802002fdd0, https://usegalaxy.org.au/published/workflow?id=ad13b4a61e8987b1, https://usegalaxy.org.au/published/workflow?id=ae5dca8108d1a8a6, https://usegalaxy.org.au/published/workflow?id=ae6892f1df022097, https://usegalaxy.org.au/published/workflow?id=aed93da6fd6e4e13, https://usegalaxy.org.au/published/workflow?id=af3f40cba4d7afa6, https://usegalaxy.org.au/published/workflow?id=af7b95f46485308c, https://usegalaxy.org.au/published/workflow?id=af990cca72794142, https://usegalaxy.org.au/published/workflow?id=afd9a8bbc07f9c3f, https://usegalaxy.org.au/published/workflow?id=b57bf134896c30ea, https://usegalaxy.org.au/published/workflow?id=b6db525b1b73394b, https://usegalaxy.org.au/published/workflow?id=b8c661ff6b79383b, https://usegalaxy.org.au/published/workflow?id=bda98c5a0ea70dd0, https://usegalaxy.org.au/published/workflow?id=c1a0a3888d9ee3ac, https://usegalaxy.org.au/published/workflow?id=c296b3848708f6f1, https://usegalaxy.org.au/published/workflow?id=c2e5a43356042b30, https://usegalaxy.org.au/published/workflow?id=c3b3717502ff6f76, https://usegalaxy.org.au/published/workflow?id=c3bb21f20a3ce689, https://usegalaxy.org.au/published/workflow?id=c3e198bc2146b4ad, https://usegalaxy.org.au/published/workflow?id=c65a5af6c0383f8c, https://usegalaxy.org.au/published/workflow?id=cb960edf95d2dc35, https://usegalaxy.org.au/published/workflow?id=cef68481b305a516, https://usegalaxy.org.au/published/workflow?id=d126940d33e63036, https://usegalaxy.org.au/published/workflow?id=d2073964dbe9acfa, https://usegalaxy.org.au/published/workflow?id=d5ecfdbc04b24227, https://usegalaxy.org.au/published/workflow?id=d7a65f577fe5f16b, https://usegalaxy.org.au/published/workflow?id=db0bc7357c181222, https://usegalaxy.org.au/published/workflow?id=db3370a412c4de78, https://usegalaxy.org.au/published/workflow?id=dce29c35dfac48b1, https://usegalaxy.org.au/published/workflow?id=de1c04a2caf70647, https://usegalaxy.org.au/published/workflow?id=e045a6064ad5fdc4, https://usegalaxy.org.au/published/workflow?id=e08ef6b519f5fba0, https://usegalaxy.org.au/published/workflow?id=e3cda847fe727b61, https://usegalaxy.org.au/published/workflow?id=e4ddf33ee5b5e259, https://usegalaxy.org.au/published/workflow?id=e52a3479c8216291, https://usegalaxy.org.au/published/workflow?id=e62f743342851151, https://usegalaxy.org.au/published/workflow?id=e826584d78b69467, https://usegalaxy.org.au/published/workflow?id=e8d3651c07ce0bec, https://usegalaxy.org.au/published/workflow?id=eaa841e6b7384633, https://usegalaxy.org.au/published/workflow?id=eb3a4535204383fa, https://usegalaxy.org.au/published/workflow?id=ec79c2fab8eac15d, https://usegalaxy.org.au/published/workflow?id=ed2f72e3537e8a4a, https://usegalaxy.org.au/published/workflow?id=efd39a4be0a9a4e6, https://usegalaxy.org.au/published/workflow?id=f0ced9a5d34b2aff, https://usegalaxy.org.au/published/workflow?id=f19d63d7c9a48160, https://usegalaxy.org.au/published/workflow?id=f268c181a47d0cab, https://usegalaxy.org.au/published/workflow?id=f5c0b0bc5e023e42, https://usegalaxy.org.au/published/workflow?id=f944f2d3fbd1f062, https://usegalaxy.org.au/published/workflow?id=fb644a9649f36f40, https://usegalaxy.org.au/published/workflow?id=fc64a77321752a3c, https://usegalaxy.org.au/published/workflow?id=fc6f8afdee980f0e, https://usegalaxy.org.au/published/workflow?id=fd477917a3d27f61, https://usegalaxy.org.au/published/workflow?id=fd8fb237f8dc24c3, https://usegalaxy.org.au/published/workflow?id=fe1de81a97578368, https://usegalaxy.org.au/published/workflow?id=fe893d72526eba71, https://usegalaxy.org.au/published/workflow?id=ff42213dda7d3e59, https://usegalaxy.org/published/workflow?id=0052e9b1b7bfec69, https://usegalaxy.org/published/workflow?id=00a501a1fada4104, https://usegalaxy.org/published/workflow?id=0292971d1a87abba, https://usegalaxy.org/published/workflow?id=02ff4efb583aaf49, https://usegalaxy.org/published/workflow?id=037c3a9d872be3de, https://usegalaxy.org/published/workflow?id=0a009cf9e88171f1, https://usegalaxy.org/published/workflow?id=0f43fdfe1824e9d7, https://usegalaxy.org/published/workflow?id=13460c791ca97689, https://usegalaxy.org/published/workflow?id=173ecc0c88090d0e, https://usegalaxy.org/published/workflow?id=1dd60e57d1d00406, https://usegalaxy.org/published/workflow?id=204d0da8a023d7da, https://usegalaxy.org/published/workflow?id=2135b0255284752c, https://usegalaxy.org/published/workflow?id=2375a915a5b33b39, https://usegalaxy.org/published/workflow?id=27144c7e44d3f56b, https://usegalaxy.org/published/workflow?id=271b97e5c00c4da4, https://usegalaxy.org/published/workflow?id=2a7fbfc1c17e38bc, https://usegalaxy.org/published/workflow?id=2d44e2b020bf94f8, https://usegalaxy.org/published/workflow?id=303af6cec326947c, https://usegalaxy.org/published/workflow?id=30883502ec515fe2, https://usegalaxy.org/published/workflow?id=31c35b9a93237235, https://usegalaxy.org/published/workflow?id=35209d092e636cd8, https://usegalaxy.org/published/workflow?id=385ac7ec85e37e3e, https://usegalaxy.org/published/workflow?id=3f8e0395007c8e9e, https://usegalaxy.org/published/workflow?id=4061e061f659449b, https://usegalaxy.org/published/workflow?id=454d7310d001a4d0, https://usegalaxy.org/published/workflow?id=4a50ce0e9f4d4bb8, https://usegalaxy.org/published/workflow?id=4c0785fe74ab0a24, https://usegalaxy.org/published/workflow?id=4e6005819e57ed35, https://usegalaxy.org/published/workflow?id=52e20808e37c8afd, https://usegalaxy.org/published/workflow?id=544ce8ff6c9f6d4c, https://usegalaxy.org/published/workflow?id=5944c5effd56b0d6, https://usegalaxy.org/published/workflow?id=5c4ce4a781317ebb, https://usegalaxy.org/published/workflow?id=5cb86cdc33296cc2, https://usegalaxy.org/published/workflow?id=63d590e8567f7157, https://usegalaxy.org/published/workflow?id=6a3e47124e32e260, https://usegalaxy.org/published/workflow?id=6c49d9c25ba4ddf5, https://usegalaxy.org/published/workflow?id=6d925811544f594b, https://usegalaxy.org/published/workflow?id=7022c4d9af725e5c, https://usegalaxy.org/published/workflow?id=73ef57dfa532af3d, https://usegalaxy.org/published/workflow?id=7551458d929355c2, https://usegalaxy.org/published/workflow?id=75f14618020c922a, https://usegalaxy.org/published/workflow?id=7a203cf1678df56d, https://usegalaxy.org/published/workflow?id=7b19452fe35b8b17, https://usegalaxy.org/published/workflow?id=7e81153760fb4c90, https://usegalaxy.org/published/workflow?id=812bc1b7a52f4f6f, https://usegalaxy.org/published/workflow?id=8700f593a3d642f5, https://usegalaxy.org/published/workflow?id=8e32b0a5a141543e, https://usegalaxy.org/published/workflow?id=8e9a94fe8e3fef9d, https://usegalaxy.org/published/workflow?id=8ec186ed3f0470e2, https://usegalaxy.org/published/workflow?id=92875b13082b5568, https://usegalaxy.org/published/workflow?id=93bfbd7db42db543, https://usegalaxy.org/published/workflow?id=9c022f4028de0bc6, https://usegalaxy.org/published/workflow?id=9efb061a87bc9f4d, https://usegalaxy.org/published/workflow?id=a743746151101352, https://usegalaxy.org/published/workflow?id=a86b1f1682bb4a62, https://usegalaxy.org/published/workflow?id=ac8b74b911778fbc, https://usegalaxy.org/published/workflow?id=b0e19e7315b64c87, https://usegalaxy.org/published/workflow?id=b2e81f82ccf3afd6, https://usegalaxy.org/published/workflow?id=b300d028da9b8396, https://usegalaxy.org/published/workflow?id=b3823d276917baf0, https://usegalaxy.org/published/workflow?id=b77fa73d4fbde131, https://usegalaxy.org/published/workflow?id=bb2ac86b0440ae86, https://usegalaxy.org/published/workflow?id=bdbfd1206c59469a, https://usegalaxy.org/published/workflow?id=c24cfddfc88a97a3, https://usegalaxy.org/published/workflow?id=cd431e5f912d3616, https://usegalaxy.org/published/workflow?id=cf3f0760611f22f9, https://usegalaxy.org/published/workflow?id=d5514e327878b531, https://usegalaxy.org/published/workflow?id=d761637d43ee0324, https://usegalaxy.org/published/workflow?id=d8afd017905d6702, https://usegalaxy.org/published/workflow?id=d97a88a8f9061e25, https://usegalaxy.org/published/workflow?id=dab54002b3c0e351, https://usegalaxy.org/published/workflow?id=e22ea88bc0fdc146, https://usegalaxy.org/published/workflow?id=e336bca259abd474, https://usegalaxy.org/published/workflow?id=e40c2e7f6b73fb11, https://usegalaxy.org/published/workflow?id=e5a01f746bc9e9b5, https://usegalaxy.org/published/workflow?id=eb01b539d17580c3, https://usegalaxy.org/published/workflow?id=ef2c1fb7d6a51b3a, https://usegalaxy.org/published/workflow?id=efb10012b8448b21, https://usegalaxy.org/published/workflow?id=f47f0b25c1405128, https://usegalaxy.org/published/workflow?id=f5d3d6fe05271c4b, https://usegalaxy.org/published/workflow?id=f961fc46d4fddecc, https://usegalaxy.org/published/workflow?id=fb903de4aa4d5090, https://workflowhub.eu/workflows/1407?version=1, https://workflowhub.eu/workflows/1437?version=1, https://workflowhub.eu/workflows/1673?version=1, https://workflowhub.eu/workflows/1675?version=1, https://workflowhub.eu/workflows/1685?version=1, https://workflowhub.eu/workflows/1692?version=1, https://workflowhub.eu/workflows/1788?version=1, https://workflowhub.eu/workflows/39?version=1, https://workflowhub.eu/workflows/688?version=1, https://workflowhub.eu/workflows/877?version=1 |
proteomics/neoantigen-non-reference-database-generation, proteomics/proteogenomics-dbcreation, transcriptomics/de-novo, transcriptomics/minerva-pathways, transcriptomics/rna-seq-reads-to-counts, transcriptomics/srna |
|
hivclustering |
hivclustering |
Infers transmission networks from pairwise distances inferred by tn93 |
2018-06-06 |
https://pypi.org/project/hivclustering/ |
1.3.1 |
python-hivclustering |
1.8.0 |
To update |
Next Gen Mappers |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/hivclustering/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/hivclustering |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
hmmer3 |
hmmer_alimask, hmmer_hmmalign, hmmer_hmmbuild, hmmer_hmmconvert, hmmer_hmmemit, hmmer_hmmfetch, hmmer_hmmscan, hmmer_hmmsearch, hmmer_jackhmmer, hmmer_nhmmer, hmmer_nhmmscan, hmmer_phmmer |
HMMER is used for searching sequence databases for homologs of proteinsequences, and for making protein sequence alignments. It implementsmethods using probabilistic models called profile hidden Markov models(profile HMMs). |
2015-02-16 |
http://hmmer.org/ |
3.4 |
hmmer |
3.4 |
Up-to-date |
Sequence Analysis |
Formatting, Multiple sequence alignment, Sequence profile generation, Format validation, Conversion, Sequence generation, Data retrieval, Statistical calculation, Database search, Formatting, Database search, Database search, Probabilistic sequence generation, Statistical calculation, Statistical calculation, Sequence database search, Formatting, Sequence database search, Database search, Sequence database search |
Formatting, Multiple sequence alignment, Sequence profile generation, Format validation, Conversion, Data retrieval, Statistical calculation, Formatting, Probabilistic sequence generation, Statistical calculation, Statistical calculation, Sequence database search, Formatting, Sequence database search, Sequence database search |
Sequence analysis, Sequence sites, features and motifs, Gene and protein families |
Sequence analysis, Sequence sites, features and motifs, Gene and protein families |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/hmmer3 |
hmmer3 |
HMMER3 |
This tool is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models. The new HMMER3 project, HMMER is now as fast as BLAST for protein search. |
|
0 |
12 |
12 |
12 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
12 |
12 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
12 |
12 |
0 |
320 |
334 |
37359 |
38872 |
0 |
0 |
0 |
0 |
49 |
49 |
3697 |
3697 |
96 |
96 |
459 |
462 |
43031 |
41515 |
479 |
465 |
https://usegalaxy.eu/published/workflow?id=02631612a43a4d9b, https://usegalaxy.eu/published/workflow?id=0ab3e47ebd3b520e, https://usegalaxy.eu/published/workflow?id=24eaa682897379c8, https://usegalaxy.eu/published/workflow?id=3eaa913306c16146, https://usegalaxy.eu/published/workflow?id=58955868b504c60d, https://usegalaxy.eu/published/workflow?id=5be158931abca947, https://usegalaxy.eu/published/workflow?id=6158c3b5fc12044e, https://usegalaxy.eu/published/workflow?id=6416cfdbd5273063, https://usegalaxy.eu/published/workflow?id=667bac8d7453e5f1, https://usegalaxy.eu/published/workflow?id=8deb08d4f228e198, https://usegalaxy.eu/published/workflow?id=9a60ecf98d4f8134, https://usegalaxy.eu/published/workflow?id=d57d41e306241396, https://usegalaxy.fr/published/workflow?id=5ec6d378e60f7ccc, https://usegalaxy.fr/published/workflow?id=7ebb54181b404733, https://usegalaxy.fr/published/workflow?id=b131218bec7eacb4, https://usegalaxy.fr/published/workflow?id=d425a77157cae2ee, https://workflowhub.eu/workflows/100?version=1, https://workflowhub.eu/workflows/37?version=1, https://workflowhub.eu/workflows/38?version=1, https://workflowhub.eu/workflows/39?version=1, https://workflowhub.eu/workflows/40?version=1 |
|
|
htseq_count |
htseq_count |
Count aligned reads (SAM/BAM) that overlap genomic features (GFF) |
2016-09-15 |
https://readthedocs.org/projects/htseq/ |
2.0.9 |
htseq |
2.0.9 |
Up-to-date |
Genomic Interval Operations, SAM, Sequence Analysis, RNA |
Nucleic acid sequence analysis |
Nucleic acid sequence analysis |
Sequence analysis |
Sequence analysis |
lparsons |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/htseq_count |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/htseq_count |
htseq |
HTSeq |
Python framework to process and analyse high-throughput sequencing (HTS) data |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
3891 |
4730 |
149069 |
178590 |
11066 |
17606 |
213121 |
363427 |
2554 |
2929 |
25747 |
34369 |
442 |
442 |
11046 |
11063 |
587449 |
398983 |
25707 |
17953 |
https://usegalaxy.eu/published/workflow?id=006ea49456a2a8ca, https://usegalaxy.eu/published/workflow?id=0821ec1cb4d6f30b, https://usegalaxy.eu/published/workflow?id=0c619b25c1394a09, https://usegalaxy.eu/published/workflow?id=0fa523529c4f73cf, https://usegalaxy.eu/published/workflow?id=153ba1581743d31f, https://usegalaxy.eu/published/workflow?id=24ddd188da35b061, https://usegalaxy.eu/published/workflow?id=5b46c8533cd95447, https://usegalaxy.eu/published/workflow?id=6514e610c79df72c, https://usegalaxy.eu/published/workflow?id=70b1c40b818cc320, https://usegalaxy.eu/published/workflow?id=8fb156020285e049, https://usegalaxy.eu/published/workflow?id=9e03cf8cd5e5de08, https://usegalaxy.eu/published/workflow?id=b619339f4e1c6fdf, https://usegalaxy.eu/published/workflow?id=b6eb5fe7e37f680a, https://usegalaxy.eu/published/workflow?id=c7e1aee909c9b483, https://usegalaxy.eu/published/workflow?id=cf9dc7ad34c81fa2, https://usegalaxy.eu/published/workflow?id=d086340422009ba9, https://usegalaxy.eu/published/workflow?id=e5f6d12e08d7a13b, https://usegalaxy.eu/published/workflow?id=eb3cfa4d1f05fc0e, https://usegalaxy.eu/published/workflow?id=f33b5135ee99e0dc, https://usegalaxy.fr/published/workflow?id=e266db902aa1b0e8, https://usegalaxy.fr/published/workflow?id=ff14dc4005e92cfd, https://usegalaxy.org.au/published/workflow?id=16a2c2e8b3c1ffe6, https://usegalaxy.org.au/published/workflow?id=1a107e6611fb9c15, https://usegalaxy.org.au/published/workflow?id=a35e5a238a70176a, https://usegalaxy.org.au/published/workflow?id=b2818098da6e2f82, https://usegalaxy.org/published/workflow?id=0292971d1a87abba, https://usegalaxy.org/published/workflow?id=204d0da8a023d7da, https://usegalaxy.org/published/workflow?id=385ac7ec85e37e3e, https://usegalaxy.org/published/workflow?id=3f8e0395007c8e9e, https://usegalaxy.org/published/workflow?id=413d7e5aa7378cf1, https://usegalaxy.org/published/workflow?id=41c09a87c6cd5f75, https://usegalaxy.org/published/workflow?id=4c0785fe74ab0a24, https://usegalaxy.org/published/workflow?id=8fb8c80c93ad694e, https://usegalaxy.org/published/workflow?id=a86b1f1682bb4a62, https://usegalaxy.org/published/workflow?id=aafa51fdc172f4c5, https://usegalaxy.org/published/workflow?id=b0e19e7315b64c87, https://usegalaxy.org/published/workflow?id=b3823d276917baf0, https://usegalaxy.org/published/workflow?id=ce232859a466c75c, https://usegalaxy.org/published/workflow?id=d2f7fd589a91124a, https://usegalaxy.org/published/workflow?id=d5514e327878b531, https://usegalaxy.org/published/workflow?id=d8afd017905d6702, https://usegalaxy.org/published/workflow?id=dcc7c5fdef8780fd, https://usegalaxy.org/published/workflow?id=dcf6f201b787d148, https://usegalaxy.org/published/workflow?id=e04f443a8ceca0d2, https://usegalaxy.org/published/workflow?id=e40c2e7f6b73fb11, https://usegalaxy.org/published/workflow?id=efb10012b8448b21, https://workflowhub.eu/workflows/412?version=1 |
|
|
humann |
humann, humann_barplot, humann_join_tables, humann_reduce_table, humann_regroup_table, humann_rename_table, humann_renorm_table, humann_split_stratified_table, humann_split_table, humann_unpack_pathways |
HUMAnN for functionally profiling metagenomes and metatranscriptomes at species-level resolution |
2021-05-12 |
http://huttenhower.sph.harvard.edu/humann |
3.9 |
humann |
3.9 |
Up-to-date |
Metagenomics |
Species frequency estimation, Taxonomic classification, Phylogenetic analysis |
Species frequency estimation, Taxonomic classification, Phylogenetic analysis |
Metagenomics, Phylogenomics |
Metagenomics, Phylogenomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/humann |
humann |
humann |
HUMAnN is a pipeline for efficiently and accurately profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data (typically millions of short DNA/RNA reads). This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community and its members. More generally, functional profiling answers the question “What are the microbes in my community-of-interest doing (or are capable of doing)?” |
|
6 |
10 |
10 |
10 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
0 |
10 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
10 |
10 |
0 |
617 |
617 |
30613 |
30613 |
53 |
53 |
1226 |
1226 |
114 |
114 |
4051 |
4051 |
3 |
3 |
619 |
619 |
36509 |
36509 |
787 |
787 |
https://dev.workflowhub.eu/workflows/1080?version=1, https://dev.workflowhub.eu/workflows/1084?version=1, https://usegalaxy.eu/published/workflow?id=21a17d6c473a88c0, https://usegalaxy.eu/published/workflow?id=23dd2253da51e22e, https://usegalaxy.eu/published/workflow?id=3118d383c81cf805, https://usegalaxy.eu/published/workflow?id=4d32b1b3ac0a7161, https://usegalaxy.eu/published/workflow?id=5ce8a472e6e95c60, https://usegalaxy.eu/published/workflow?id=5f0faac42b0a5062, https://usegalaxy.eu/published/workflow?id=713a5485e2007f90, https://usegalaxy.eu/published/workflow?id=87cc0cd143a12c41, https://usegalaxy.eu/published/workflow?id=9472be79da012999, https://usegalaxy.eu/published/workflow?id=a7a6d8ecc2795f58, https://usegalaxy.eu/published/workflow?id=a8f829deb69b30ab, https://usegalaxy.eu/published/workflow?id=b14845359b702444, https://usegalaxy.eu/published/workflow?id=cb2df493f5e334f7, https://usegalaxy.eu/published/workflow?id=fdca6c9d394986bf, https://usegalaxy.fr/published/workflow?id=c4f6062e51d0f45e, https://usegalaxy.fr/published/workflow?id=fd733565098d76c9, https://workflowhub.eu/workflows/1447?version=2, https://workflowhub.eu/workflows/1456?version=2, https://workflowhub.eu/workflows/1466?version=2 |
microbiome/metatranscriptomics, microbiome/metatranscriptomics-short |
|
hybpiper |
hybpiper |
Analyse targeted sequence capture data |
2023-08-30 |
https://github.com/mossmatters/HybPiper |
2.1.6 |
hybpiper |
2.3.3 |
To update |
Sequence Analysis, Phylogenetics |
Sequence trimming, Sequence assembly, Read mapping |
Sequence trimming, Sequence assembly, Read mapping |
Phylogenetics, Plant biology, Gene transcripts, Sequence assembly, Phylogenomics |
Phylogenetics, Plant biology, Gene transcripts, Sequence assembly, Phylogenomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/hybpiper |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/hybpiper |
HybPiper |
HybPiper |
Paralogs and off-target sequences improve phylogenetic resolution in a densely-sampled study of the breadfruit genus (Artocarpus, Moraceae).Recovering genes from targeted sequence capture data.Current version: 1.3.1 (August 2018).-- Read our article in Applications in Plant Sciences (Open Access).HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched for gene regions of interest, especially for phylogenetics. HybPiper is a suite of Python scripts that wrap and connect bioinformatics tools in order to extract target sequences from high-throughput DNA sequencing reads. |
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
1591 |
1591 |
0 |
0 |
0 |
0 |
4 |
4 |
187 |
187 |
0 |
0 |
0 |
0 |
1778 |
1778 |
8 |
8 |
|
|
|
hyphy |
hyphy_absrel, hyphy_annotate, hyphy_bgm, hyphy_busted, hyphy_cfel, hyphy_conv, hyphy_fade, hyphy_fel, hyphy_fubar, hyphy_gard, hyphy_meme, hyphy_prime, hyphy_relax, hyphy_slac, hyphy_sm19, hyphy_strike_ambigs, hyphy_summary |
Hypothesis Testing using Phylogenies |
2018-06-08 |
http://www.hyphy.org |
2.5.47 |
hyphy |
2.5.77 |
To update |
Phylogenetics |
Statistical calculation |
Statistical calculation |
Phylogeny, Small molecules, Molecular interactions, pathways and networks |
Phylogeny, Small molecules, Molecular interactions, pathways and networks |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/hyphy |
HyPhy |
HyPhy |
Software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning. |
|
17 |
2 |
17 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
12 |
17 |
12 |
0 |
76 |
76 |
11928 |
12038 |
96 |
96 |
8092 |
8092 |
40 |
40 |
794 |
794 |
4 |
4 |
25 |
25 |
20949 |
20839 |
216 |
216 |
https://dev.workflowhub.eu/workflows/43?version=1, https://usegalaxy.eu/published/workflow?id=1d40d6deb2da04cc, https://usegalaxy.eu/published/workflow?id=e7f03b4bd9b3d6fd, https://usegalaxy.fr/published/workflow?id=297b71156b297a73, https://usegalaxy.org.au/published/workflow?id=42137e36791652bc, https://usegalaxy.org/published/workflow?id=2d1ca299c1b058f6, https://usegalaxy.org/published/workflow?id=a46ad0b9240d1a13, https://usegalaxy.org/published/workflow?id=e1cc0886cd27b92e |
|
|
hypo |
hypo |
Super Fast & Accurate Polisher for Long Read Genome Assemblies |
2021-11-15 |
https://github.com/kensung-lab/hypo |
1.0.3 |
hypo |
1.0.3 |
Up-to-date |
Assembly |
Optimisation and refinement, Genome assembly |
Optimisation and refinement, Genome assembly |
Sequence assembly, Genomics |
Sequence assembly, Genomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/hypo |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/hypo |
HyPo |
HyPo |
HyPo, a Hybrid Polisher, utilizes short as well as long reads within a single run to polish a long reads assembly of small and large genomes. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
99 |
99 |
505 |
505 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
505 |
505 |
99 |
99 |
https://usegalaxy.eu/published/workflow?id=83a1b8949d87e3da, https://workflowhub.eu/workflows/788?version=1, https://workflowhub.eu/workflows/789?version=1 |
|
|
icescreen |
icescreen |
identification of ICEs and IMEs in Bacillota genomes. |
2022-01-04 |
https://forgemia.inra.fr/ices_imes_analysis/icescreen |
1.3.3 |
icescreen |
1.3.3 |
Up-to-date |
Genome annotation |
Database search, Protein feature detection |
Database search, Protein feature detection |
Mobile genetic elements, Sequence sites, features and motifs, Genomics, Molecular interactions, pathways and networks, Structural variation |
Mobile genetic elements, Sequence sites, features and motifs, Genomics, Molecular interactions, pathways and networks, Structural variation |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/icescreen |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/icescreen |
icescreen |
ICEscreen |
A tool to detect Firmicute ICEs and IMEs, isolated or enclosed in composite structures. |
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
idba |
idba_hybrid, idba_tran, idba_ud |
Wrappers for the idba assembler variants. |
2018-04-26 |
https://i.cs.hku.hk/~alse/hkubrg/projects/index.html |
|
idba |
1.1.3 |
To update |
Assembly |
Sequence assembly |
Sequence assembly |
Sequence assembly |
Sequence assembly |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/idba_ud |
idba |
IDBA |
A short read assembler based on iterative De Bruijn graph. It is developed under 64-bit Linux, but should be suitable for all unix-like system. |
|
3 |
0 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
3 |
0 |
104 |
119 |
1117 |
1292 |
149 |
150 |
1575 |
1643 |
0 |
0 |
0 |
0 |
1 |
1 |
3 |
3 |
2938 |
2695 |
270 |
254 |
|
|
|
idr |
idr |
Galaxy wrappers for the IDR package from Nathan Boleu |
2017-08-21 |
https://github.com/nboley/idr |
2.0.3 |
idr |
2.0.4.2 |
To update |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/idr/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/idr |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
117 |
126 |
2952 |
3068 |
217 |
217 |
1863 |
1863 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4931 |
4815 |
343 |
334 |
https://usegalaxy.eu/published/workflow?id=3817cfbab7b39ee1, https://usegalaxy.org/published/workflow?id=59d34b4f0178120b |
epigenetics/cut_and_run |
|
idr_download_by_ids |
idr_download_by_ids |
Image Data Resource downloading tool |
2020-02-04 |
https://idr.openmicroscopy.org |
0.45 |
omero-py |
5.11.1 |
To update |
Data Source |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/idr_download |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/idr_download |
|
|
|
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
39 |
39 |
432 |
432 |
0 |
0 |
0 |
0 |
1 |
1 |
207 |
207 |
0 |
0 |
0 |
0 |
639 |
639 |
40 |
40 |
https://dev.workflowhub.eu/workflows/1262?version=2, https://usegalaxy.eu/published/workflow?id=7d7550ce7004d71e, https://workflowhub.eu/workflows/1505?version=1, https://workflowhub.eu/workflows/1528?version=1, https://workflowhub.eu/workflows/41?version=2 |
imaging/2D-spot-detection, imaging/tutorial-CP |
|
iedb_api |
iedb_api |
Get epitope binding predictions from IEDB-API |
2020-02-26 |
http://tools.immuneepitope.org/main/tools-api/ |
2.15.2 |
python |
|
To update |
Data Source, Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/iedb_api |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/iedb_api |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
38 |
38 |
1579 |
1579 |
2 |
2 |
11 |
11 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1590 |
1590 |
40 |
40 |
https://dev.workflowhub.eu/workflows/1382?version=1, https://usegalaxy.eu/published/workflow?id=9b4e6c5f2c1babce, https://usegalaxy.eu/published/workflow?id=c3f2350f0be2d9c9, https://usegalaxy.org.au/published/workflow?id=832a30759469d3fe, https://usegalaxy.org/published/workflow?id=d0847ce8261eb922, https://workflowhub.eu/workflows/1406?version=1, https://workflowhub.eu/workflows/1789?version=1 |
proteomics/neoantigen-hla-binding-novel-peptides |
|
infercnv |
infercnv |
Infer Copy Number Variation from Single-Cell RNA-Seq Data |
2024-07-23 |
https://github.com/broadinstitute/infercnv |
1.22.0 |
bioconductor-infercnv |
1.22.0 |
Up-to-date |
Transcriptomics, Variant Analysis, Single Cell |
Heat map generation, Expression analysis, RNA-Seq analysis, Copy number variation detection, Clustering |
Heat map generation, RNA-Seq analysis, Copy number variation detection, Clustering |
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/infercnv |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/infercnv |
infercnv |
InferCNV |
Inferring copy number alterations from tumor single cell RNA-Seq data |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
5 |
29 |
29 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
29 |
29 |
5 |
5 |
|
|
|
instrain |
instrain_compare, instrain_profile |
InStrain is a tool for analysis of co-occurring genome populations from metagenomes |
2021-08-11 |
https://instrain.readthedocs.io/en/latest/# |
1.5.3 |
instrain |
1.10.0 |
To update |
Metagenomics |
SNP detection, Genome comparison |
SNP detection, Genome comparison |
Mapping, Metagenomics |
Mapping, Metagenomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/instrain |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/instrain |
instrain |
InStrain |
InStrain is a tool for analysis of co-occurring genome populations from metagenomes that allows highly accurate genome comparisons, analysis of coverage, microdiversity, and linkage, and sensitive SNP detection with gene localization and synonymous non-synonymous identification |
|
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
16 |
16 |
106 |
106 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
106 |
106 |
16 |
16 |
|
|
|
integronfinder |
integron_finder |
"IntegronFinder identify integrons with high accuracy and sensitivity.It searches for attC sites using covariance models, for integron-integrases using HMM profiles, and for other features (promoters, attI site) using pattern matching" |
2022-09-22 |
https://github.com/gem-pasteur/Integron_Finder |
2.0.5 |
integron_finder |
2.0.6 |
To update |
Sequence Analysis |
Nucleic acid feature detection, Sequence motif recognition, Protein feature detection, Genome annotation |
Nucleic acid feature detection, Sequence motif recognition, Protein feature detection, Genome annotation |
Functional genomics, Mobile genetic elements, Molecular biology, Sequence analysis |
Functional genomics, Mobile genetic elements, Molecular biology, Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/blob/master/tools/integron_finder |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/integron_finder |
integron_finder |
Integron Finder |
A tool to detect Integron in DNA sequences. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
280 |
280 |
60639 |
60639 |
109 |
109 |
2299 |
2299 |
106 |
106 |
7737 |
7737 |
28 |
28 |
1672 |
1672 |
72347 |
72347 |
523 |
523 |
https://dev.workflowhub.eu/workflows/1136?version=2, https://usegalaxy.eu/published/workflow?id=2c1a6da84d891cf2, https://usegalaxy.eu/published/workflow?id=36ea584e0f60893e, https://usegalaxy.eu/published/workflow?id=3f5fe28793ed0c6c, https://usegalaxy.eu/published/workflow?id=4a218fb93d78ba67, https://usegalaxy.eu/published/workflow?id=61948fcaefa1418a, https://usegalaxy.eu/published/workflow?id=6b69ab27c565257b, https://usegalaxy.eu/published/workflow?id=8792eaecb69fbc26, https://usegalaxy.eu/published/workflow?id=a18aed4b03ffd27e, https://usegalaxy.eu/published/workflow?id=b1afc8d1e81fc904, https://usegalaxy.eu/published/workflow?id=bcd50e655809cfcb, https://usegalaxy.eu/published/workflow?id=d8db0b2e30370b84, https://usegalaxy.eu/published/workflow?id=dfb8e0f3c534000e, https://usegalaxy.fr/published/workflow?id=7964ddc68853458f, https://usegalaxy.org/published/workflow?id=04c5ea133de3204c, https://usegalaxy.org/published/workflow?id=3940186d02245b1d, https://usegalaxy.org/published/workflow?id=4f8bdd61c524b901, https://usegalaxy.org/published/workflow?id=649cdc14757e5755, https://usegalaxy.org/published/workflow?id=8cb8a588a0495cfa, https://usegalaxy.org/published/workflow?id=993534c11310a207, https://usegalaxy.org/published/workflow?id=d2a5f6a5181aada5, https://workflowhub.eu/workflows/1050?version=11, https://workflowhub.eu/workflows/1513?version=1 |
genome-annotation/bacterial-genome-annotation |
|
intermine_galaxy_exchange |
galaxy_intermine_exchange |
InterMine Exporter |
2018-07-01 |
https://github.com/intermine |
0.0.1 |
coreutils |
8.25 |
To update |
Convert Formats |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/intermine_galaxy_exchange |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/intermine_galaxy_exchange |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
7 |
13 |
30 |
47 |
11 |
15 |
43 |
87 |
1 |
1 |
129 |
129 |
0 |
0 |
0 |
0 |
263 |
202 |
29 |
19 |
https://dev.workflowhub.eu/workflows/1290?version=2, https://workflowhub.eu/workflows/1398?version=1 |
galaxy-interface/intermine |
|
interproscan |
interproscan |
Interproscan queries the interpro database and provides annotations. |
2021-11-15 |
http://www.ebi.ac.uk/Tools/pfa/iprscan5/ |
5.59-91.0 |
interproscan |
5.59_91.0 |
To update |
Sequence Analysis |
Sequence motif recognition, Protein feature detection |
Sequence motif recognition, Protein feature detection |
Gene and protein families, Sequence analysis |
Gene and protein families, Sequence analysis |
bgruening |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/interproscan |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/interproscan |
interproscan_ebi |
InterProScan (EBI) |
Scan sequences against the InterPro protein signature databases. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1916 |
2027 |
38987 |
62864 |
97 |
97 |
502 |
502 |
664 |
664 |
11896 |
11896 |
127 |
127 |
9268 |
9268 |
84530 |
60653 |
2915 |
2804 |
https://dev.workflowhub.eu/workflows/1183?version=1, https://dev.workflowhub.eu/workflows/1202?version=1, https://dev.workflowhub.eu/workflows/1357?version=1, https://usegalaxy.cz/published/workflow?id=932f4901960a595a, https://usegalaxy.eu/published/workflow?id=02631612a43a4d9b, https://usegalaxy.eu/published/workflow?id=0b9071d5dfa38559, https://usegalaxy.eu/published/workflow?id=2d2862b48918b22f, https://usegalaxy.eu/published/workflow?id=33312e5643279e8a, https://usegalaxy.eu/published/workflow?id=3eaa913306c16146, https://usegalaxy.eu/published/workflow?id=58955868b504c60d, https://usegalaxy.eu/published/workflow?id=6158c3b5fc12044e, https://usegalaxy.eu/published/workflow?id=6416cfdbd5273063, https://usegalaxy.eu/published/workflow?id=667bac8d7453e5f1, https://usegalaxy.eu/published/workflow?id=8deb08d4f228e198, https://usegalaxy.eu/published/workflow?id=9a95556ec171d405, https://usegalaxy.eu/published/workflow?id=a448400f69594135, https://usegalaxy.eu/published/workflow?id=b9c938d1af08124b, https://usegalaxy.eu/published/workflow?id=cc59ae1a9878942c, https://usegalaxy.eu/published/workflow?id=d57d41e306241396, https://usegalaxy.eu/published/workflow?id=df7d9943423549df, https://usegalaxy.eu/published/workflow?id=f62d7c0c7cc57eb6, https://usegalaxy.org.au/published/workflow?id=35f39173f0ac9179, https://usegalaxy.org.au/published/workflow?id=876163677f1cccc4, https://usegalaxy.org.au/published/workflow?id=a9068ea858222e2b, https://usegalaxy.org/published/workflow?id=92613e1e0b13aa0a, https://usegalaxy.org/published/workflow?id=c451e4dca9981ed0, https://workflowhub.eu/workflows/1262?version=1, https://workflowhub.eu/workflows/1521?version=1, https://workflowhub.eu/workflows/1525?version=1, https://workflowhub.eu/workflows/1663?version=1, https://workflowhub.eu/workflows/754?version=1, https://workflowhub.eu/workflows/755?version=1 |
ecology/marine_omics_bgc, genome-annotation/funannotate, genome-annotation/functional |
|
interval2maf |
Interval2Maf1 |
Extract MAF blocks given a set of intervals |
2020-07-14 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ |
1.0.1+galaxy1 |
bx-python |
0.14.0 |
To update |
Genomic Interval Operations |
|
|
Sequence analysis |
Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/interval2maf |
bx-python |
bx-python |
Tools for manipulating biological data, particularly multiple sequence alignments. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
7 |
10 |
32 |
107 |
88 |
1250 |
777 |
19608 |
2 |
2 |
16 |
24 |
1 |
1 |
1 |
1 |
19740 |
826 |
1263 |
98 |
https://usegalaxy.org/published/workflow?id=7cae620eea6326af, https://usegalaxy.org/published/workflow?id=d3a69b0b826331ef |
|
|
intervene |
intervene_pairwise, intervene_upset |
Create pairwise and upset plots |
2018-09-11 |
https://intervene.readthedocs.io |
0.6.5 |
intervene |
0.6.5 |
Up-to-date |
Statistics |
Sequence comparison, Sequence visualisation |
Sequence comparison, Sequence visualisation |
Computational biology |
Computational biology |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/intervene |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/intervene |
intervene |
Intervene |
Tool for intersection and visualization of multiple gene or genomic region sets. Intervene contains three modules: venn to generate Venn diagrams of up to six sets, upset to generate UpSet plots of multiple sets, and pairwise to compute and visualize intersections of multiple sets as clustered heat maps. |
|
2 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
239 |
249 |
1705 |
1790 |
260 |
260 |
4628 |
4628 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6418 |
6333 |
509 |
499 |
|
|
|
ipfp_normalisation |
ipfp_norm |
Normalisation algorithm used to adjust matrices iteratively to satisfy specific row and column sum constraints while preserving the data structure. |
2025-01-28 |
https://isoquac.net/ |
0.1.0+galaxy0 |
numpy |
|
To update |
Statistics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ipfp_normalisation |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ipfp_normalisation |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
iqtree |
iqtree |
Efficient phylogenomic software by maximum likelihood |
2017-09-26 |
http://www.iqtree.org/ |
2.4.0 |
iqtree |
3.0.1 |
To update |
Phylogenetics |
Phylogenetic analysis, Sequence analysis |
Phylogenetic analysis, Sequence analysis |
Phylogenetics |
Phylogenetics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/iqtree/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/iqtree |
iqtree |
iqtree |
A fast and effective stochastic algorithm to infer phylogenetic trees by maximum likelihood. IQ-TREE compares favorably to RAxML and PhyML in terms of likelihoods with similar computing time |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1815 |
1872 |
34294 |
34745 |
2439 |
2439 |
27821 |
27821 |
946 |
1074 |
15740 |
16435 |
0 |
0 |
0 |
0 |
79001 |
77855 |
5385 |
5200 |
https://dev.workflowhub.eu/workflows/1296?version=2, https://usegalaxy.eu/published/workflow?id=628062a8cf93261f, https://usegalaxy.eu/published/workflow?id=94c3d329c31c712f, https://usegalaxy.eu/published/workflow?id=a15dabcadb63b46d, https://usegalaxy.eu/published/workflow?id=c789ab71876c6ead, https://usegalaxy.eu/published/workflow?id=cd25f70f71683ab6, https://usegalaxy.eu/published/workflow?id=d5cf994c03a60fa4, https://usegalaxy.eu/published/workflow?id=e97b938ca4723827, https://usegalaxy.org.au/published/workflow?id=3242ec69dec6e13f, https://usegalaxy.org.au/published/workflow?id=3fd2195b6928d5e0, https://usegalaxy.org/published/workflow?id=1518c8c50747a1c1, https://usegalaxy.org/published/workflow?id=23212ae74fc2d2b5, https://usegalaxy.org/published/workflow?id=603e5c61c57bcf3f, https://usegalaxy.org/published/workflow?id=6a1eb7e7bececba1, https://usegalaxy.org/published/workflow?id=78d8b738f5715a8a, https://usegalaxy.org/published/workflow?id=952b83e52f7d7cff, https://usegalaxy.org/published/workflow?id=97263f3308077ff0, https://usegalaxy.org/published/workflow?id=9c4038fa15af6995, https://usegalaxy.org/published/workflow?id=e1cc0886cd27b92e, https://workflowhub.eu/workflows/1260?version=2, https://workflowhub.eu/workflows/1374?version=1, https://workflowhub.eu/workflows/1559?version=1, https://workflowhub.eu/workflows/359?version=1 |
evolution/abc_intro_phylo, sequence-analysis/tapscan-streptophyte-algae, variant-analysis/aiv-analysis |
|
irissv |
irissv |
Refine insertion sequences |
2021-01-17 |
https://github.com/mkirsche/Iris |
1.0.5 |
samtools |
1.22.1 |
To update |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tools/irissv/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/irissv |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
8 |
8 |
29 |
29 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
29 |
29 |
8 |
8 |
|
|
|
irma |
irma |
Iterative Refinement Meta-Assembler (IRMA) is a tool to construct assembly of highly variable RNA viruses. |
2024-11-09 |
https://wonder.cdc.gov/amd/flu/irma/irma.html |
1.2.0 |
irma |
1.2.0 |
Up-to-date |
Sequence Analysis |
Mapping assembly |
Mapping assembly |
|
|
iuc |
https://github.com/aaronKol/tools-iuc/tree/main/tools/irma |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/irma |
irma-virus |
IRMA |
Iterative Refinement Meta-Assembler for robust assembly, variant calling, and phasing of highly variable RNA virus sequencing data |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
7548 |
7548 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7548 |
7548 |
2 |
2 |
|
|
|
isoformswitchanalyzer |
isoformswitchanalyzer |
Statistical identification of isoform switching from RNA-seq derived quantification of novel and/or annotated full-length isoforms. |
2022-12-17 |
https://bioconductor.org/packages/devel/bioc/html/IsoformSwitchAnalyzeR.html |
1.20.0 |
bioconductor-isoformswitchanalyzer |
2.6.0 |
To update |
Transcriptomics, RNA, Statistics |
Sequence comparison, Sequence analysis |
Sequence comparison, Sequence analysis |
Computational biology, Gene transcripts |
Computational biology, Gene transcripts |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/isoformswitchanalyzer |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/isoformswitchanalyzer |
IsoformSwitchAnalyzeR |
IsoformSwitchAnalyzeR |
Enables identification of isoform switches with predicted functional consequences from RNA-seq data. Consequences can be chosen from a long list but includes protein domains gain/loss changes in NMD sensitivity etc. It directly supports import of data from Cufflinks/Cuffdiff, Kallisto, Salmon and RSEM but other transcript qunatification tools are easy to import as well. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
72 |
72 |
1563 |
1563 |
95 |
95 |
2046 |
2046 |
14 |
14 |
706 |
706 |
1 |
1 |
8 |
8 |
4323 |
4323 |
182 |
182 |
https://dev.workflowhub.eu/workflows/1324?version=3, https://usegalaxy.eu/published/workflow?id=11eba1b28ec87963, https://usegalaxy.eu/published/workflow?id=1f9a9a7998ef5ab3, https://usegalaxy.eu/published/workflow?id=47a0407867a90f95, https://usegalaxy.eu/published/workflow?id=9b025479fade745d, https://usegalaxy.eu/published/workflow?id=b7a3cbcd32734e8b, https://usegalaxy.org.au/published/workflow?id=6e1e24f9e0326930, https://workflowhub.eu/workflows/1688?version=1 |
transcriptomics/differential-isoform-expression |
|
ivar |
ivar_consensus, ivar_filtervariants, ivar_removereads, ivar_trim, ivar_variants |
iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing |
2020-03-21 |
https://github.com/andersen-lab/ivar |
1.4.4 |
ivar |
1.4.4 |
Up-to-date |
Sequence Analysis |
Primer removal |
Primer removal |
Virology |
Virology |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ivar |
andersen-lab_ivar |
iVar |
iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. |
|
5 |
5 |
5 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
5 |
5 |
5 |
0 |
965 |
965 |
1311467 |
1311467 |
1110 |
1110 |
136524 |
136524 |
357 |
357 |
53360 |
53360 |
19 |
19 |
7296 |
7296 |
1508647 |
1508647 |
2451 |
2451 |
https://dev.workflowhub.eu/workflows/143?version=1, https://dev.workflowhub.eu/workflows/144?version=1, https://dev.workflowhub.eu/workflows/195?version=2, https://dev.workflowhub.eu/workflows/196?version=2, https://dev.workflowhub.eu/workflows/583?version=1, https://usegalaxy.eu/published/workflow?id=0189bab68f828d86, https://usegalaxy.eu/published/workflow?id=0be293debca8fb9b, https://usegalaxy.eu/published/workflow?id=0f6a7bd5362e4a2b, https://usegalaxy.eu/published/workflow?id=2573209308aaad23, https://usegalaxy.eu/published/workflow?id=2d9d4445a1871230, https://usegalaxy.eu/published/workflow?id=3fb550d7c2bc390a, https://usegalaxy.eu/published/workflow?id=429ae28a178cd07c, https://usegalaxy.eu/published/workflow?id=45fc2dada84d251e, https://usegalaxy.eu/published/workflow?id=476db04368d5e90c, https://usegalaxy.eu/published/workflow?id=4b4bfc79205d83f1, https://usegalaxy.eu/published/workflow?id=4c75ab0be3c56494, https://usegalaxy.eu/published/workflow?id=4d97068a725c975c, https://usegalaxy.eu/published/workflow?id=4f40ae432d8a4259, https://usegalaxy.eu/published/workflow?id=529f30e894beacc2, https://usegalaxy.eu/published/workflow?id=52bdf400f97c5770, https://usegalaxy.eu/published/workflow?id=53de0e742573e588, https://usegalaxy.eu/published/workflow?id=579dd1e95e76402f, https://usegalaxy.eu/published/workflow?id=5c15f251642bfa1f, https://usegalaxy.eu/published/workflow?id=629e57958afed44c, https://usegalaxy.eu/published/workflow?id=6dbac47941a804da, https://usegalaxy.eu/published/workflow?id=6e1fe7372e93fae0, https://usegalaxy.eu/published/workflow?id=74f19aff1b9cdd6b, https://usegalaxy.eu/published/workflow?id=7bdd9ad918edab0b, https://usegalaxy.eu/published/workflow?id=98bfad0c684011e9, https://usegalaxy.eu/published/workflow?id=9feebfc6c34da287, https://usegalaxy.eu/published/workflow?id=a15dabcadb63b46d, https://usegalaxy.eu/published/workflow?id=a31100610fba17a1, https://usegalaxy.eu/published/workflow?id=a6f4371ef9bc1aab, https://usegalaxy.eu/published/workflow?id=ada52ba09b462567, https://usegalaxy.eu/published/workflow?id=b77e3b08092fa73e, https://usegalaxy.eu/published/workflow?id=b97532c398b821a2, https://usegalaxy.eu/published/workflow?id=c789ab71876c6ead, https://usegalaxy.eu/published/workflow?id=cd25f70f71683ab6, https://usegalaxy.eu/published/workflow?id=d88145e7475e0b7b, https://usegalaxy.eu/published/workflow?id=ed20bd120064bab0, https://usegalaxy.eu/published/workflow?id=ee6dc47660540ba6, https://usegalaxy.eu/published/workflow?id=fc0b9efa7d2e61e6, https://usegalaxy.eu/published/workflow?id=fc216dfb0ec9ed41, https://usegalaxy.eu/published/workflow?id=fcf745185d6e0ea4, https://usegalaxy.fr/published/workflow?id=2345fad7dac13daa, https://usegalaxy.fr/published/workflow?id=591c57173e259ca6, https://usegalaxy.fr/published/workflow?id=61235264d5d2f666, https://usegalaxy.fr/published/workflow?id=727cfdb7c79287d1, https://usegalaxy.fr/published/workflow?id=7d27dd394b921846, https://usegalaxy.fr/published/workflow?id=98529cff0ef36b91, https://usegalaxy.fr/published/workflow?id=d0d12c0b80c286f9, https://usegalaxy.fr/published/workflow?id=e0b225d4b2556365, https://usegalaxy.fr/published/workflow?id=e3c04a30258421aa, https://usegalaxy.org.au/published/workflow?id=094a545d44ce28cc, https://usegalaxy.org.au/published/workflow?id=0c6f7bfc826433c4, https://usegalaxy.org.au/published/workflow?id=265a3ce9305702f5, https://usegalaxy.org.au/published/workflow?id=2b2ce7e1206d177d, https://usegalaxy.org.au/published/workflow?id=3223ceaa2b58d940, https://usegalaxy.org.au/published/workflow?id=3c657dd766d02f6a, https://usegalaxy.org.au/published/workflow?id=47ce6a2d30887637, https://usegalaxy.org.au/published/workflow?id=48a60965b6b3ff54, https://usegalaxy.org.au/published/workflow?id=4bc8ac41ecff7daf, https://usegalaxy.org.au/published/workflow?id=6b1b0a945d367b4c, https://usegalaxy.org.au/published/workflow?id=71f90428fbf8755b, https://usegalaxy.org.au/published/workflow?id=7563b3ef697a69fd, https://usegalaxy.org.au/published/workflow?id=7fd58f5fc93f414e, https://usegalaxy.org.au/published/workflow?id=810242a3dc4f6170, https://usegalaxy.org.au/published/workflow?id=888eb87b62c4e6dd, https://usegalaxy.org.au/published/workflow?id=888f8377eb6eabf2, https://usegalaxy.org.au/published/workflow?id=8ffcaa3f4a56ce35, https://usegalaxy.org.au/published/workflow?id=932bad88f8dc8d33, https://usegalaxy.org.au/published/workflow?id=b432a1312859edd2, https://usegalaxy.org.au/published/workflow?id=ba7a9d4c857d26b7, https://usegalaxy.org.au/published/workflow?id=baa763dbdf6afb71, https://usegalaxy.org.au/published/workflow?id=bcf230e526632064, https://usegalaxy.org.au/published/workflow?id=be9213411c520096, https://usegalaxy.org.au/published/workflow?id=c1ce3f2ae7c81c3e, https://usegalaxy.org.au/published/workflow?id=c9156ca3df2b595c, https://usegalaxy.org.au/published/workflow?id=ccf936c5b2f2c2f3, https://usegalaxy.org.au/published/workflow?id=d35d05be576e8b13, https://usegalaxy.org.au/published/workflow?id=d8a4a8bc4fa2f9ee, https://usegalaxy.org.au/published/workflow?id=e439a0e17a90d24c, https://usegalaxy.org.au/published/workflow?id=f52fb12383c8a214, https://usegalaxy.org.au/published/workflow?id=fca05a51c9c91df4, https://usegalaxy.org.au/published/workflow?id=fe5542c99cdc57ce, https://usegalaxy.org/published/workflow?id=0ee0493f3168cbb3, https://usegalaxy.org/published/workflow?id=0fa2ce12c2874b1d, https://usegalaxy.org/published/workflow?id=1518c8c50747a1c1, https://usegalaxy.org/published/workflow?id=1f48b44fa22ac5fc, https://usegalaxy.org/published/workflow?id=2ded909e7e3a9962, https://usegalaxy.org/published/workflow?id=4357180d40560019, https://usegalaxy.org/published/workflow?id=4b41a8247f52c463, https://usegalaxy.org/published/workflow?id=4cf8cc42e97b2da6, https://usegalaxy.org/published/workflow?id=6b11d738ee57f245, https://usegalaxy.org/published/workflow?id=7dde0721a382ea3e, https://usegalaxy.org/published/workflow?id=7e2651e5ed17e3db, https://usegalaxy.org/published/workflow?id=88d0b64011c3148c, https://usegalaxy.org/published/workflow?id=8b81b9a3b49bbf98, https://usegalaxy.org/published/workflow?id=8e1c6ad6ff623015, https://usegalaxy.org/published/workflow?id=953d9cbe05e632a8, https://usegalaxy.org/published/workflow?id=97263f3308077ff0, https://usegalaxy.org/published/workflow?id=98b2ac8fc75781f8, https://usegalaxy.org/published/workflow?id=9adf8691809326e5, https://usegalaxy.org/published/workflow?id=9fc9f1db50019929, https://usegalaxy.org/published/workflow?id=b34ba9b2e4d8f050, https://usegalaxy.org/published/workflow?id=bd355e8ce58a139e, https://usegalaxy.org/published/workflow?id=bf3ccae8d5b6ef58, https://usegalaxy.org/published/workflow?id=bf90f2bd20fbff21, https://usegalaxy.org/published/workflow?id=c12e6b7896f8e114, https://usegalaxy.org/published/workflow?id=c7b2d2ccc4b0dec5, https://usegalaxy.org/published/workflow?id=cdf5dffbed938d49, https://usegalaxy.org/published/workflow?id=d3428dd172a78102, https://usegalaxy.org/published/workflow?id=d4ea6cdd40522eb1, https://usegalaxy.org/published/workflow?id=d96bd5c9fb553f2c, https://usegalaxy.org/published/workflow?id=e282f505ba9f729f, https://workflowhub.eu/workflows/110?version=11, https://workflowhub.eu/workflows/111?version=5, https://workflowhub.eu/workflows/1260?version=2, https://workflowhub.eu/workflows/155?version=5, https://workflowhub.eu/workflows/439?version=3, https://workflowhub.eu/workflows/519?version=1 |
variant-analysis/aiv-analysis, variant-analysis/pox-tiled-amplicon |
|
iwtomics |
iwtomics_loadandplot, iwtomics_plotwithscale, iwtomics_testandplot |
Interval-Wise Testing for Omics Data |
2017-06-08 |
https://bioconductor.org/packages/release/bioc/html/IWTomics.html |
1.0.0 |
bioconductor-iwtomics |
1.30.0 |
To update |
Statistics |
Differential gene expression analysis, Differentially-methylated region identification, Peak calling, Genome annotation, Comparison |
Differential gene expression analysis, Peak calling, Genome annotation, Comparison |
Statistics and probability |
Statistics and probability |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/iwtomics |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/iwtomics |
iwtomics |
IWTomics |
Implementation of the Interval-Wise Testing (IWT) for omics data. This inferential procedure tests for differences in "Omics" data between two groups of genomic regions (or between a group of genomic regions and a reference center of symmetry), and does not require fixing location and scale at the outset. |
|
3 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
3 |
0 |
12 |
13 |
657 |
698 |
18 |
34 |
102 |
252 |
5 |
5 |
446 |
446 |
0 |
0 |
0 |
0 |
1396 |
1205 |
52 |
35 |
https://dev.workflowhub.eu/workflows/1317?version=2, https://workflowhub.eu/workflows/1719?version=1 |
statistics/iwtomics |
|
jasminesv |
jasminesv |
Merge structural variants across samples |
2021-01-17 |
https://github.com/mkirsche/Jasmine/ |
1.0.11 |
jasminesv |
1.1.5 |
To update |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/jasminesv/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/jasminesv |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
12 |
12 |
38 |
38 |
21 |
21 |
56 |
56 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
94 |
94 |
33 |
33 |
|
|
|
jbrowse |
jbrowse_to_standalone, jbrowse |
JBrowse Genome Browser integrated as a Galaxy Tool |
2015-05-01 |
https://jbrowse.org |
1.16.11 |
jbrowse |
1.16.11 |
Up-to-date |
Sequence Analysis |
Genome visualisation |
Genome visualisation |
Genomics |
Genomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/jbrowse |
jbrowse |
JBrowse |
Slick, speedy genome browser with a responsive and dynamic AJAX interface for visualization of genome data. Being developed by the GMOD project as a successor to GBrowse. |
|
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
5949 |
6348 |
23165 |
24830 |
6770 |
6771 |
19679 |
19680 |
3092 |
3853 |
16135 |
18935 |
241 |
241 |
1062 |
1062 |
64507 |
60041 |
17213 |
16052 |
https://dev.workflowhub.eu/workflows/1005?version=1, https://dev.workflowhub.eu/workflows/1093?version=2, https://dev.workflowhub.eu/workflows/1136?version=2, https://dev.workflowhub.eu/workflows/1139?version=1, https://dev.workflowhub.eu/workflows/1164?version=2, https://dev.workflowhub.eu/workflows/1168?version=2, https://dev.workflowhub.eu/workflows/1186?version=2, https://dev.workflowhub.eu/workflows/1190?version=2, https://dev.workflowhub.eu/workflows/1194?version=2, https://dev.workflowhub.eu/workflows/1202?version=1, https://dev.workflowhub.eu/workflows/121?version=1, https://dev.workflowhub.eu/workflows/1269?version=1, https://dev.workflowhub.eu/workflows/1358?version=2, https://usegalaxy.cz/published/workflow?id=932f4901960a595a, https://usegalaxy.eu/published/workflow?id=0b9071d5dfa38559, https://usegalaxy.eu/published/workflow?id=12653a1e65a20304, https://usegalaxy.eu/published/workflow?id=152223c8aed27357, https://usegalaxy.eu/published/workflow?id=26ad77bc07a7e512, https://usegalaxy.eu/published/workflow?id=2b25eaebd3987612, https://usegalaxy.eu/published/workflow?id=31bc2a44fb89aa89, https://usegalaxy.eu/published/workflow?id=327beb1edda305ff, https://usegalaxy.eu/published/workflow?id=3c233cc56d4df8b0, https://usegalaxy.eu/published/workflow?id=3d604dad4f1f5b3d, https://usegalaxy.eu/published/workflow?id=3dcf09e75d707573, https://usegalaxy.eu/published/workflow?id=3ff4dbcc7a602e6b, https://usegalaxy.eu/published/workflow?id=4077e77b6af919c4, https://usegalaxy.eu/published/workflow?id=41268469c6616e42, https://usegalaxy.eu/published/workflow?id=44189803f223acd1, https://usegalaxy.eu/published/workflow?id=461d71caea871db8, https://usegalaxy.eu/published/workflow?id=4ddbffe4b3fef275, https://usegalaxy.eu/published/workflow?id=515ef1601bc24a6c, https://usegalaxy.eu/published/workflow?id=5826e573b6f93762, https://usegalaxy.eu/published/workflow?id=5aba0f20d994b1a4, https://usegalaxy.eu/published/workflow?id=6ca20e710f4f3ffb, https://usegalaxy.eu/published/workflow?id=733650962d379da2, https://usegalaxy.eu/published/workflow?id=7aa32aba3fde0708, https://usegalaxy.eu/published/workflow?id=7f6950394a8c9c4a, https://usegalaxy.eu/published/workflow?id=8048cadfd1ed1661, https://usegalaxy.eu/published/workflow?id=8976041ef89e4548, https://usegalaxy.eu/published/workflow?id=920aab45ff028ed4, https://usegalaxy.eu/published/workflow?id=93d1035a307fe63d, https://usegalaxy.eu/published/workflow?id=968f0ac2617aa524, https://usegalaxy.eu/published/workflow?id=a337bfb2eb1e583f, https://usegalaxy.eu/published/workflow?id=a84bac86ec183d46, https://usegalaxy.eu/published/workflow?id=c0f225536e78a178, https://usegalaxy.eu/published/workflow?id=c38e3ac59d8b86d6, https://usegalaxy.eu/published/workflow?id=c9ef2d2ce92e2dfb, https://usegalaxy.eu/published/workflow?id=cae527ce845e770e, https://usegalaxy.eu/published/workflow?id=d2f75f70c33394ee, https://usegalaxy.eu/published/workflow?id=d3dfe7ba11508c72, https://usegalaxy.eu/published/workflow?id=df7d9943423549df, https://usegalaxy.eu/published/workflow?id=e1894c36f1ab4ab4, https://usegalaxy.eu/published/workflow?id=f62d7c0c7cc57eb6, https://usegalaxy.fr/published/workflow?id=ae05ff8487f58fd6, https://usegalaxy.org.au/published/workflow?id=0dbb0d1ae1222bd0, https://usegalaxy.org.au/published/workflow?id=0f71c97671bb401f, https://usegalaxy.org.au/published/workflow?id=16a2c2e8b3c1ffe6, https://usegalaxy.org.au/published/workflow?id=1719e0eb54b41f68, https://usegalaxy.org.au/published/workflow?id=22bd45f60c60a338, https://usegalaxy.org.au/published/workflow?id=2e29b21cdec7d0cc, https://usegalaxy.org.au/published/workflow?id=33401b29d277b447, https://usegalaxy.org.au/published/workflow?id=4e161a8f5098cc49, https://usegalaxy.org.au/published/workflow?id=5693811cd933d2a2, https://usegalaxy.org.au/published/workflow?id=59d6ee23bff41eec, https://usegalaxy.org.au/published/workflow?id=6c67e22d18566af3, https://usegalaxy.org.au/published/workflow?id=7c343e5b55474d19, https://usegalaxy.org.au/published/workflow?id=7e40485d1ed45b7c, https://usegalaxy.org.au/published/workflow?id=8031655d71b59d15, https://usegalaxy.org.au/published/workflow?id=87cdeb05b1ebeab0, https://usegalaxy.org.au/published/workflow?id=914330feb75ea9ab, https://usegalaxy.org.au/published/workflow?id=a35e5a238a70176a, https://usegalaxy.org.au/published/workflow?id=a61d4bda54de7cd1, https://usegalaxy.org.au/published/workflow?id=b2818098da6e2f82, https://usegalaxy.org.au/published/workflow?id=b5403e4fff2961f9, https://usegalaxy.org.au/published/workflow?id=c456492ce4f963d0, https://usegalaxy.org.au/published/workflow?id=cb6f49d4ebfa0891, https://usegalaxy.org.au/published/workflow?id=d8a4a8bc4fa2f9ee, https://usegalaxy.org.au/published/workflow?id=eba41e98316b8a08, https://usegalaxy.org/published/workflow?id=0795dd1d83662bae, https://usegalaxy.org/published/workflow?id=0f308c521abfe2c9, https://usegalaxy.org/published/workflow?id=4605309321799e9b, https://usegalaxy.org/published/workflow?id=49c61c378cacfe02, https://usegalaxy.org/published/workflow?id=53d65fd38b9b8c1b, https://usegalaxy.org/published/workflow?id=547f86db467bf620, https://usegalaxy.org/published/workflow?id=5674956f5c18b85b, https://usegalaxy.org/published/workflow?id=5b2bb861501fa248, https://usegalaxy.org/published/workflow?id=5bcd1aade71a8035, https://usegalaxy.org/published/workflow?id=5efe288b18c7d0ab, https://usegalaxy.org/published/workflow?id=612452c925d723b7, https://usegalaxy.org/published/workflow?id=62436fe121e035e7, https://usegalaxy.org/published/workflow?id=6d68f56abf9c624d, https://usegalaxy.org/published/workflow?id=c9a8fd89224e7414, https://usegalaxy.org/published/workflow?id=ce232859a466c75c, https://usegalaxy.org/published/workflow?id=dbe08700353dfc43, https://usegalaxy.org/published/workflow?id=ec3cc032a90c44f1, https://usegalaxy.org/published/workflow?id=ee4679b3e9e830b7, https://usegalaxy.org/published/workflow?id=f4111a169255535c, https://workflowhub.eu/workflows/1255?version=3, https://workflowhub.eu/workflows/1323?version=1, https://workflowhub.eu/workflows/1488?version=1, https://workflowhub.eu/workflows/1497?version=1, https://workflowhub.eu/workflows/1500?version=1, https://workflowhub.eu/workflows/1504?version=1, https://workflowhub.eu/workflows/1509?version=1, https://workflowhub.eu/workflows/1513?version=1, https://workflowhub.eu/workflows/1525?version=1, https://workflowhub.eu/workflows/1549?version=1, https://workflowhub.eu/workflows/1554?version=1, https://workflowhub.eu/workflows/1617?version=1, https://workflowhub.eu/workflows/1639?version=1, https://workflowhub.eu/workflows/1657?version=1, https://workflowhub.eu/workflows/1746?version=1, https://workflowhub.eu/workflows/520?version=1, https://workflowhub.eu/workflows/749?version=1, https://workflowhub.eu/workflows/754?version=1 |
assembly/chloroplast-assembly, assembly/ecoli_comparison, genome-annotation/amr-gene-detection, genome-annotation/annotation-with-maker, genome-annotation/annotation-with-maker-short, genome-annotation/annotation-with-prokka, genome-annotation/apollo, genome-annotation/apollo-euk, genome-annotation/bacterial-genome-annotation, genome-annotation/braker3, genome-annotation/comparison-braker-helixer-annotation, genome-annotation/funannotate, genome-annotation/helixer, sequence-analysis/mapping, sequence-analysis/sars-with-galaxy-on-anvil, variant-analysis/microbial-variants, variant-analysis/tb-variant-analysis, visualisation/jbrowse |
|
jcvi_gff_stats |
jcvi_gff_stats |
Compute statistics from a genome annotation in GFF3 format (using JCVI Python utilities) |
2018-07-31 |
https://github.com/tanghaibao/jcvi |
0.8.4 |
jcvi |
1.5.6 |
To update |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/jcvi_gff_stats |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
672 |
741 |
2936 |
3229 |
817 |
818 |
2611 |
2613 |
509 |
509 |
1348 |
1348 |
38 |
38 |
353 |
353 |
7543 |
7248 |
2106 |
2036 |
https://dev.workflowhub.eu/workflows/1164?version=2, https://dev.workflowhub.eu/workflows/1194?version=2, https://dev.workflowhub.eu/workflows/1358?version=2, https://usegalaxy.eu/published/workflow?id=26ad77bc07a7e512, https://usegalaxy.eu/published/workflow?id=31bc2a44fb89aa89, https://usegalaxy.eu/published/workflow?id=327beb1edda305ff, https://usegalaxy.eu/published/workflow?id=3d604dad4f1f5b3d, https://usegalaxy.eu/published/workflow?id=4077e77b6af919c4, https://usegalaxy.eu/published/workflow?id=6ca20e710f4f3ffb, https://usegalaxy.eu/published/workflow?id=8976041ef89e4548, https://usegalaxy.fr/published/workflow?id=ae05ff8487f58fd6, https://usegalaxy.org.au/published/workflow?id=49b253f75ab6f38f, https://usegalaxy.org.au/published/workflow?id=7e40485d1ed45b7c, https://usegalaxy.org.au/published/workflow?id=a9068ea858222e2b, https://usegalaxy.org/published/workflow?id=4605309321799e9b, https://usegalaxy.org/published/workflow?id=65b4051e722228b8, https://usegalaxy.org/published/workflow?id=7fc8b2398b6f093f, https://usegalaxy.org/published/workflow?id=dbe08700353dfc43, https://usegalaxy.org/published/workflow?id=f4111a169255535c, https://workflowhub.eu/workflows/1255?version=3, https://workflowhub.eu/workflows/1323?version=1, https://workflowhub.eu/workflows/1500?version=1, https://workflowhub.eu/workflows/1504?version=1, https://workflowhub.eu/workflows/1549?version=1, https://workflowhub.eu/workflows/881?version=5 |
genome-annotation/annotation-with-maker, genome-annotation/annotation-with-maker-short, genome-annotation/helixer |
|
jellyfish |
jellyfish |
Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA |
2021-04-07 |
https://github.com/gmarcais/Jellyfish |
|
kmer-jellyfish |
2.3.1 |
To update |
Assembly |
k-mer counting |
k-mer counting |
Sequence analysis, Genomics |
Sequence analysis, Genomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/jellyfish |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/jellyfish |
Jellyfish |
Jellyfish |
A command-line algorithm for counting k-mers in DNA sequence. |
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
261 |
261 |
1997 |
1997 |
0 |
0 |
0 |
0 |
69 |
69 |
1231 |
1231 |
31 |
31 |
1461 |
1461 |
4689 |
4689 |
361 |
361 |
https://usegalaxy.eu/published/workflow?id=bc32937d505135ab |
|
|
join_files_by_id |
join_files_by_id |
This tool will join datasets according to a column with identifier |
2017-05-31 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/join_files_by_id |
1.0 |
r-data.table |
1.11.6 |
To update |
Text Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/join_files_by_id |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/join_files_by_id |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
jq |
jq |
JQ is a lightweight and flexible command-line JSON processor |
2017-06-22 |
https://stedolan.github.io/jq/ |
1.0 |
jq |
1.5 |
To update |
Text Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/jq |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/jq |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
60 |
65 |
599 |
2377 |
88 |
88 |
352 |
352 |
12 |
12 |
322 |
322 |
3 |
3 |
8 |
8 |
3059 |
1281 |
168 |
163 |
https://workflowhub.eu/workflows/245?version=1, https://workflowhub.eu/workflows/373?version=2, https://workflowhub.eu/workflows/374?version=1, https://workflowhub.eu/workflows/375?version=1 |
galaxy-interface/ncbi-sarf |
|
jvarkit |
jvarkit_wgscoverageplotter |
Jvarkit : Java utilities for Bioinformatics |
2021-02-11 |
https://lindenb.github.io/jvarkit/ |
20201223 |
jvarkit-wgscoverageplotter |
20201223 |
Up-to-date |
SAM |
|
|
|
|
iuc |
https://github.com/galaxyproject/iuc/tree/master/tools/jvarkit |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/jvarkit |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
595 |
595 |
8104 |
8104 |
1296 |
1296 |
13822 |
13822 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
21926 |
21926 |
1891 |
1891 |
https://usegalaxy.eu/published/workflow?id=cd3398e29f375d97, https://usegalaxy.org/published/workflow?id=3dbe754882a263cd |
variant-analysis/tb-variant-analysis |
|
kaiju |
kaiju_addtaxonnames, kaiju_mergeoutputs, kaiju_kaiju, kaiju_kaiju2krona, kaiju_kaiju2table |
taxonomic classification of high-throughput sequencing reads |
2025-04-22 |
https://github.com/bioinformatics-centre/kaiju |
1.10.1 |
kaiju |
1.10.1 |
Up-to-date |
Metagenomics |
Taxonomic classification |
Taxonomic classification |
Metagenomics |
Metagenomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/kaiju |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/kaiju |
kaiju |
Kaiju |
Program for the taxonomic assignment of high-throughput sequencing reads, e.g., Illumina or Roche/454, from whole-genome sequencing of metagenomic DNA. Reads are directly assigned to taxa using the NCBI taxonomy and a reference database of protein sequences from Bacteria, Archaea, Fungi, microbial eukaryotes and viruses. |
|
0 |
0 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
kallisto |
kallisto_pseudo, kallisto_quant |
kallisto is a program for quantifying abundances of transcripts from RNA-Seqdata, or more generally of target sequences using high-throughput sequencingreads. It is based on the novel idea of pseudoalignment for rapidlydetermining the compatibility of reads with targets, without the need foralignment. |
2017-08-04 |
https://pachterlab.github.io/kallisto/ |
0.48.0 |
kallisto |
0.51.1 |
To update |
Transcriptomics |
Gene expression profiling |
Gene expression profiling |
Transcriptomics, RNA-Seq, Gene expression |
Transcriptomics, RNA-Seq |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/kallisto/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/kallisto |
kallisto |
kallisto |
A program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. |
|
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
834 |
899 |
29732 |
31465 |
2096 |
2588 |
74251 |
86306 |
184 |
202 |
5695 |
6126 |
16 |
16 |
513 |
513 |
124410 |
110191 |
3705 |
3130 |
https://usegalaxy.eu/published/workflow?id=385cc7df70d7916b, https://usegalaxy.eu/published/workflow?id=fd90652d475ed739, https://usegalaxy.org/published/workflow?id=08bdcecd1cb0bda3, https://usegalaxy.org/published/workflow?id=526b05cbffecbc85, https://usegalaxy.org/published/workflow?id=7d9bf3437e0a3d27, https://usegalaxy.org/published/workflow?id=c2c6779a8b1821e0 |
|
|
kc_align |
kc-align |
Kc-Align custom tool |
2020-02-20 |
https://github.com/davebx/kc-align |
1.0.2 |
kcalign |
1.0.2 |
Up-to-date |
Sequence Analysis |
Multiple sequence alignment |
Multiple sequence alignment |
Mapping |
Mapping |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/kc-align |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/kc-align |
kc-align |
kc-align |
A fast and accurate tool for performing codon-aware multiple sequence alignments. Kc-Align is a codon-aware multiple aligner that uses Kalgin2 to produce in-frame gapped codon alignments for selection analysis of small genomes (mostly viral and some smaller bacterial genomes). Takes nucleotide seqeunces as inputs, converts them to their in-frame amino acid sequences, performs multiple alignment with Kalign, and then converts the alignments back to their original codon sequence while preserving the gaps. Produces three outputs: the gapped nucleotide alignments in FASTA format and in CLUSTAL format and the amino acid level alignment.Kc-Align will also attempt to detect any frameshift mutations in the input reads. If a frameshift is detected, that sequence will not be included in the multiple alignment and its ID will be printed to stdout. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
55 |
55 |
382 |
382 |
279 |
279 |
8306 |
8306 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8688 |
8688 |
334 |
334 |
https://usegalaxy.org/published/workflow?id=a46ad0b9240d1a13, https://usegalaxy.org/published/workflow?id=e1cc0886cd27b92e |
|
|
khmer |
khmer_abundance_distribution_single, khmer_abundance_distribution, khmer_count_median, khmer_partition, khmer_extract_partitions, khmer_filter_abundance, khmer_filter_below_abundance_cutoff, khmer_normalize_by_median |
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more |
2015-03-24 |
https://khmer.readthedocs.org/ |
3.0.0a3 |
khmer |
3.0.0a3 |
Up-to-date |
Assembly, Next Gen Mappers |
Standardisation and normalisation, De-novo assembly |
Standardisation and normalisation, De-novo assembly |
Sequence assembly |
Sequence assembly |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/khmer |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/khmer |
khmer |
khmer |
khmer is a set of command-line tools for working with DNA shotgun sequencing data from genomes, transcriptomes, metagenomes, and single cells. khmer can make de novo assemblies faster, and sometimes better. khmer can also identify (and fix) problems with shotgun data. |
|
8 |
8 |
8 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
8 |
8 |
8 |
0 |
90 |
106 |
1775 |
2145 |
172 |
172 |
1508 |
1509 |
23 |
23 |
1845 |
1845 |
0 |
0 |
0 |
0 |
5499 |
5128 |
301 |
285 |
|
|
|
king |
king |
Kinship-based INference for Gwas |
2021-11-16 |
http://people.virginia.edu/~wc9c/KING/ |
2.2.7 |
king |
2.2.7 |
Up-to-date |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/king/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/king |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
4 |
4 |
8 |
8 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8 |
8 |
4 |
4 |
|
|
|
kleborate |
kleborate |
Screen genome assemblies of Klebsiella pneumoniae and the Klebsiella pneumoniae species complex (KpSC) |
2022-09-09 |
https://github.com/katholt/Kleborate/wiki |
2.3.2 |
kleborate |
3.2.4 |
To update |
Metagenomics |
Multilocus sequence typing, Genome assembly, Virulence prediction |
Multilocus sequence typing, Genome assembly, Virulence prediction |
Public health and epidemiology, Metagenomics, Population genomics, Sequence assembly, Whole genome sequencing |
Public health and epidemiology, Metagenomics, Population genomics, Sequence assembly, Whole genome sequencing |
iuc |
https://github.com/katholt/Kleborate |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/kleborate |
kleborate |
Kleborate |
Genomic surveillance framework and global population structure for Klebsiella pneumoniae.Kleborate is a tool to screen genome assemblies of Klebsiella pneumoniae and the Klebsiella pneumoniae species complex (KpSC) for:.A manuscript describing the Kleborate software in full is currently in preparation. In the meantime, if you use Kleborate, please cite the preprint: Lam, MMC. et al. Genomic surveillance framework and global population structure for Klebsiella pneumoniae. bioRxiv (2020). |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
74 |
74 |
650 |
650 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
650 |
650 |
74 |
74 |
|
|
|
kma |
kma_map |
Map with KMA |
2019-10-30 |
https://bitbucket.org/genomicepidemiology/kma |
1.5.1 |
kma |
1.5.1 |
Up-to-date |
Next Gen Mappers |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/kma |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/kma |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
https://workflowhub.eu/workflows/407?version=1 |
|
|
kmer2stats |
kmer2stats |
A tool for creating data files for statistics based on kmers |
2025-04-16 |
https://github.com/SantaMcCloud/kmer2stats |
1.0.1 |
kmer2stats |
1.0.1 |
Up-to-date |
Metagenomics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/kmer2stats/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/kmer2stats |
|
|
|
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
kofamscan |
kofamscan |
Gene function annotation tool based on KEGG Orthology and hidden Markov model |
2020-11-12 |
https://github.com/takaram/kofam_scan |
1.3.0 |
kofamscan |
1.3.0 |
Up-to-date |
Sequence Analysis |
Sequence analysis, Gene functional annotation |
Sequence analysis, Gene functional annotation |
Genomics, Structure analysis |
Genomics, Structure analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/kofamscan |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/kofamscan |
kofamscan |
kofamscan |
KofamScan is a gene function annotation tool based on KEGG Orthology and hidden Markov model. You need KOfam database to use this tool. |
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
74 |
74 |
1643 |
1643 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
3 |
3 |
1646 |
1646 |
76 |
76 |
https://usegalaxy.eu/published/workflow?id=3eaa913306c16146, https://usegalaxy.eu/published/workflow?id=6158c3b5fc12044e, https://usegalaxy.eu/published/workflow?id=6416cfdbd5273063, https://usegalaxy.eu/published/workflow?id=667bac8d7453e5f1, https://usegalaxy.eu/published/workflow?id=8deb08d4f228e198, https://usegalaxy.eu/published/workflow?id=9b9e1e28f3683f92, https://usegalaxy.eu/published/workflow?id=d57d41e306241396 |
|
|
kraken |
kraken-filter, kraken-mpa-report, kraken-report, kraken-translate, kraken |
Kraken is a system for assigning taxonomic labels to short DNAsequences, usually obtained through metagenomic studies. Previous attempts by otherbioinformatics software to accomplish this task have often used sequence alignmentor machine learning techniques that were quite slow, leading to the developmentof less sensitive but much faster abundance estimation programs. Kraken aims toachieve high sensitivity and high speed by utilizing exact alignments of k-mersand a novel classification algorithm. |
2017-01-24 |
http://ccb.jhu.edu/software/kraken/ |
|
kraken |
1.1.1 |
To update |
Metagenomics |
Taxonomic classification |
Taxonomic classification |
Taxonomy, Metagenomics |
Taxonomy, Metagenomics |
devteam |
https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/kraken |
kraken |
Kraken |
System for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. It aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm. |
|
5 |
5 |
5 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
5 |
5 |
5 |
0 |
1154 |
1155 |
59088 |
59121 |
2537 |
3936 |
58182 |
136649 |
737 |
918 |
31342 |
35855 |
109 |
109 |
1805 |
1805 |
233430 |
150417 |
6118 |
4537 |
https://usegalaxy.org.au/published/workflow?id=b6bad1f167257248, https://usegalaxy.org/published/workflow?id=2ec3e326c51d3147, https://usegalaxy.org/published/workflow?id=33d90e718ce500ef, https://usegalaxy.org/published/workflow?id=7321c6ad5425d347, https://usegalaxy.org/published/workflow?id=a89e1018a00b883c, https://usegalaxy.org/published/workflow?id=e0c33057ac2670ba, https://usegalaxy.org/published/workflow?id=fb01e1a49793c8be |
|
|
kraken2 |
kraken2 |
Kraken2 for taxonomic designation. |
2019-03-05 |
http://ccb.jhu.edu/software/kraken/ |
2.1.3 |
kraken2 |
2.14 |
To update |
Metagenomics |
Taxonomic classification |
Taxonomic classification |
Taxonomy, Metagenomics, Microbial ecology, Microbiology |
Taxonomy, Metagenomics, Microbial ecology |
iuc |
https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken2/kraken2/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/kraken2/kraken2 |
kraken2 |
kraken2 |
Kraken 2 is the newest version of Kraken, a taxonomic classification system using exact k-mer matches to achieve high accuracy and fast classification speeds. This classifier matches each k-mer within a query sequence to the lowest common ancestor (LCA) of all genomes containing the given k-mer. The k-mer assignments inform the classification algorithm.Any assumption that Kraken’s raw read assignments can be directly translated into species or strain-level abundance estimates is flawed. Bracken (Bayesian Reestimation of Abundance after Classification with KrakEN), estimates species abundances in metagenomics samples by probabilistically re-distributing reads in the taxonomic tree. (Lu, Jennifer et al. “Bracken: estimating species abundance in metagenomics data.”) |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
0 |
7415 |
7500 |
373848 |
375341 |
5782 |
5782 |
167119 |
167119 |
1884 |
1884 |
69091 |
69091 |
128 |
128 |
7084 |
7084 |
618635 |
617142 |
15294 |
15209 |
https://dev.workflowhub.eu/workflows/1064?version=1, https://dev.workflowhub.eu/workflows/1069?version=2, https://dev.workflowhub.eu/workflows/1073?version=1, https://dev.workflowhub.eu/workflows/1087?version=2, https://dev.workflowhub.eu/workflows/1095?version=1, https://dev.workflowhub.eu/workflows/1097?version=1, https://dev.workflowhub.eu/workflows/1217?version=2, https://dev.workflowhub.eu/workflows/1344?version=1, https://dev.workflowhub.eu/workflows/1359?version=1, https://dev.workflowhub.eu/workflows/583?version=1, https://usegalaxy.eu/published/workflow?id=007ce6405d196df3, https://usegalaxy.eu/published/workflow?id=012762cb4acb068b, https://usegalaxy.eu/published/workflow?id=04ed3f21de17aa1d, https://usegalaxy.eu/published/workflow?id=0590554db9794d13, https://usegalaxy.eu/published/workflow?id=08eb5e55109c4d9c, https://usegalaxy.eu/published/workflow?id=0a82eb8b44d9d502, https://usegalaxy.eu/published/workflow?id=0abd32dbc5207b88, https://usegalaxy.eu/published/workflow?id=0bafeb17c21ebc9c, https://usegalaxy.eu/published/workflow?id=0c47571d20535426, https://usegalaxy.eu/published/workflow?id=0f044c9f62773a88, https://usegalaxy.eu/published/workflow?id=10101558b211a782, https://usegalaxy.eu/published/workflow?id=12a018217ee146ca, https://usegalaxy.eu/published/workflow?id=14714876dda7186d, https://usegalaxy.eu/published/workflow?id=181e751be8dd9abc, https://usegalaxy.eu/published/workflow?id=2497292e98937a5f, https://usegalaxy.eu/published/workflow?id=2b25eaebd3987612, https://usegalaxy.eu/published/workflow?id=2c2f0b4312bae4f4, https://usegalaxy.eu/published/workflow?id=2c79eee5ca5a3b09, https://usegalaxy.eu/published/workflow?id=2e0075791f7fa384, https://usegalaxy.eu/published/workflow?id=2e5e6291cd112225, https://usegalaxy.eu/published/workflow?id=2fa2f67603772413, https://usegalaxy.eu/published/workflow?id=309fc4fc2e0da89c, https://usegalaxy.eu/published/workflow?id=33a052f9a3d5551d, https://usegalaxy.eu/published/workflow?id=344cd3a3c2ce5302, https://usegalaxy.eu/published/workflow?id=39d36a7ce0ef268d, https://usegalaxy.eu/published/workflow?id=3dec7c9b02c3d1ee, https://usegalaxy.eu/published/workflow?id=3ff4dbcc7a602e6b, https://usegalaxy.eu/published/workflow?id=44e16f0782f54111, https://usegalaxy.eu/published/workflow?id=461d71caea871db8, https://usegalaxy.eu/published/workflow?id=47e14222073e7192, https://usegalaxy.eu/published/workflow?id=49c46d7653d6c349, https://usegalaxy.eu/published/workflow?id=4a39d38fde81e35d, https://usegalaxy.eu/published/workflow?id=4a764275d4bf9f31, https://usegalaxy.eu/published/workflow?id=4f0daf8e9dd54127, https://usegalaxy.eu/published/workflow?id=57cfe5062c8e01bf, https://usegalaxy.eu/published/workflow?id=57d3109f32defa3b, https://usegalaxy.eu/published/workflow?id=5826e573b6f93762, https://usegalaxy.eu/published/workflow?id=628062a8cf93261f, https://usegalaxy.eu/published/workflow?id=6a5c39c1d38a10c2, https://usegalaxy.eu/published/workflow?id=7d84b0419296857d, https://usegalaxy.eu/published/workflow?id=87231a6a7938cb95, https://usegalaxy.eu/published/workflow?id=884a4415b669690c, https://usegalaxy.eu/published/workflow?id=889f2782ad82bd69, https://usegalaxy.eu/published/workflow?id=8a14cda6140acab7, https://usegalaxy.eu/published/workflow?id=8b2f53745e720d0f, https://usegalaxy.eu/published/workflow?id=8c7e972020799d57, https://usegalaxy.eu/published/workflow?id=8d64614d1971065a, https://usegalaxy.eu/published/workflow?id=8deb08d4f228e198, https://usegalaxy.eu/published/workflow?id=8ee3b635c1c380cd, https://usegalaxy.eu/published/workflow?id=94c3d329c31c712f, https://usegalaxy.eu/published/workflow?id=9588311136ac8794, https://usegalaxy.eu/published/workflow?id=98bfad0c684011e9, https://usegalaxy.eu/published/workflow?id=a0ea6fc756dd17ea, https://usegalaxy.eu/published/workflow?id=a337bfb2eb1e583f, https://usegalaxy.eu/published/workflow?id=a403c661bf1bc4fa, https://usegalaxy.eu/published/workflow?id=a705370bc2c13d5c, https://usegalaxy.eu/published/workflow?id=a84bac86ec183d46, https://usegalaxy.eu/published/workflow?id=aafcfcb585c5ca75, https://usegalaxy.eu/published/workflow?id=ad8b6d73c9654305, https://usegalaxy.eu/published/workflow?id=b14845359b702444, https://usegalaxy.eu/published/workflow?id=b2b46e71046b1999, https://usegalaxy.eu/published/workflow?id=b37800d990cceb83, https://usegalaxy.eu/published/workflow?id=b659069edd9b1d4e, https://usegalaxy.eu/published/workflow?id=b67b5ecd3305f830, https://usegalaxy.eu/published/workflow?id=bb63b5bb983fd49c, https://usegalaxy.eu/published/workflow?id=bd4e3cdc7f29049b, https://usegalaxy.eu/published/workflow?id=bdc7cfaac0db2eab, https://usegalaxy.eu/published/workflow?id=c09159d7aad0f264, https://usegalaxy.eu/published/workflow?id=c14d2e8b3c191bc4, https://usegalaxy.eu/published/workflow?id=c38e3ac59d8b86d6, https://usegalaxy.eu/published/workflow?id=c4fc3adf8f7ff2bc, https://usegalaxy.eu/published/workflow?id=c930a54a30dcc7e3, https://usegalaxy.eu/published/workflow?id=ca80039c4933aa0a, https://usegalaxy.eu/published/workflow?id=cb2df493f5e334f7, https://usegalaxy.eu/published/workflow?id=cfd37e9e307e5d3d, https://usegalaxy.eu/published/workflow?id=d0ae255151450dad, https://usegalaxy.eu/published/workflow?id=d88145e7475e0b7b, https://usegalaxy.eu/published/workflow?id=e69b555faa6bb962, https://usegalaxy.eu/published/workflow?id=ebb131f2a6172081, https://usegalaxy.eu/published/workflow?id=ec6b2c926fffab5f, https://usegalaxy.eu/published/workflow?id=ed2df13cfbc86b99, https://usegalaxy.eu/published/workflow?id=ee0005a5487653ba, https://usegalaxy.eu/published/workflow?id=ef6556d65ce5d72c, https://usegalaxy.eu/published/workflow?id=f97e6fe1fcbc53a7, https://usegalaxy.eu/published/workflow?id=fde21b5f5c169114, https://usegalaxy.fr/published/workflow?id=3d3b40398d1cd1ae, https://usegalaxy.org.au/published/workflow?id=0edb9c8b767fa74b, https://usegalaxy.org.au/published/workflow?id=131636a795bac485, https://usegalaxy.org.au/published/workflow?id=25d52afddaa3451b, https://usegalaxy.org.au/published/workflow?id=3d47e0de658b3304, https://usegalaxy.org.au/published/workflow?id=4047f9f242542716, https://usegalaxy.org.au/published/workflow?id=4c7e0703aace6aa3, https://usegalaxy.org.au/published/workflow?id=52065a4100b11184, https://usegalaxy.org.au/published/workflow?id=5693811cd933d2a2, https://usegalaxy.org.au/published/workflow?id=59618ed15510f531, https://usegalaxy.org.au/published/workflow?id=5fb44f257e445f56, https://usegalaxy.org.au/published/workflow?id=69d91340fc7effa2, https://usegalaxy.org.au/published/workflow?id=7a0c4804e4d4c905, https://usegalaxy.org.au/published/workflow?id=8034bd0690b4cbe8, https://usegalaxy.org.au/published/workflow?id=83441e3de699d157, https://usegalaxy.org.au/published/workflow?id=897a1255cef5c310, https://usegalaxy.org.au/published/workflow?id=92fcdd490831c6c5, https://usegalaxy.org.au/published/workflow?id=97e55a900db3863b, https://usegalaxy.org.au/published/workflow?id=a335b9c9103b57ad, https://usegalaxy.org.au/published/workflow?id=a61d4bda54de7cd1, https://usegalaxy.org.au/published/workflow?id=c92fead7c30c7497, https://usegalaxy.org.au/published/workflow?id=c997a34b55425155, https://usegalaxy.org.au/published/workflow?id=d2dcd3b54e5082a6, https://usegalaxy.org.au/published/workflow?id=d417e920ff97e4c1, https://usegalaxy.org.au/published/workflow?id=d720c98f7227b6d5, https://usegalaxy.org.au/published/workflow?id=d9ba165e6ae55417, https://usegalaxy.org.au/published/workflow?id=e20172eb0f30d6cd, https://usegalaxy.org.au/published/workflow?id=ed3e48a73b5aaa56, https://usegalaxy.org/published/workflow?id=1473cdcbd664d147, https://usegalaxy.org/published/workflow?id=1b80302437db5937, https://usegalaxy.org/published/workflow?id=1be5c982c2d36a6c, https://usegalaxy.org/published/workflow?id=21161075002d6778, https://usegalaxy.org/published/workflow?id=2a782ad24271f570, https://usegalaxy.org/published/workflow?id=3011f5dbf884c9bc, https://usegalaxy.org/published/workflow?id=323c651ca583c9e5, https://usegalaxy.org/published/workflow?id=4b5f6b5d4f36e38b, https://usegalaxy.org/published/workflow?id=4f698eaeef30e364, https://usegalaxy.org/published/workflow?id=574e42683dc3961b, https://usegalaxy.org/published/workflow?id=5b74b780d3955eb3, https://usegalaxy.org/published/workflow?id=5c259623a010fe77, https://usegalaxy.org/published/workflow?id=5e38c7b36e4918ad, https://usegalaxy.org/published/workflow?id=605160c81d098703, https://usegalaxy.org/published/workflow?id=60f0d0d5d6e93941, https://usegalaxy.org/published/workflow?id=623fc80c7f91a33a, https://usegalaxy.org/published/workflow?id=7321c6ad5425d347, https://usegalaxy.org/published/workflow?id=7c9a55db0b0eb178, https://usegalaxy.org/published/workflow?id=8f5904693b5f74f4, https://usegalaxy.org/published/workflow?id=9f68718f025bed30, https://usegalaxy.org/published/workflow?id=a63927dd19759714, https://usegalaxy.org/published/workflow?id=a8b9252fad5fe06a, https://usegalaxy.org/published/workflow?id=b68ec42db8953569, https://usegalaxy.org/published/workflow?id=b6a795834009ce06, https://usegalaxy.org/published/workflow?id=b7817a12dbee583c, https://usegalaxy.org/published/workflow?id=b7fe3873ee5e3a02, https://usegalaxy.org/published/workflow?id=badd4b56dbdeaba7, https://usegalaxy.org/published/workflow?id=c3ea8fa3bb202dc6, https://usegalaxy.org/published/workflow?id=c8f9e048ddae7d03, https://usegalaxy.org/published/workflow?id=cace9f1359874352, https://usegalaxy.org/published/workflow?id=d2c408df40dc311b, https://usegalaxy.org/published/workflow?id=d4f0a7ccb09f1e55, https://usegalaxy.org/published/workflow?id=de9bf4c1024f8d53, https://usegalaxy.org/published/workflow?id=dfd73857c0eb2a21, https://usegalaxy.org/published/workflow?id=e12324f5e3b930fd, https://usegalaxy.org/published/workflow?id=e7ce46762faccaac, https://usegalaxy.org/published/workflow?id=e887adf3afc3253d, https://usegalaxy.org/published/workflow?id=ea206593698adbfd, https://usegalaxy.org/published/workflow?id=f378960ee55f567e, https://usegalaxy.org/published/workflow?id=fc2b48600853f3ea, https://workflowhub.eu/workflows/100?version=1, https://workflowhub.eu/workflows/101?version=1, https://workflowhub.eu/workflows/1035?version=1, https://workflowhub.eu/workflows/1052?version=11, https://workflowhub.eu/workflows/1059?version=1, https://workflowhub.eu/workflows/1061?version=1, https://workflowhub.eu/workflows/1199?version=2, https://workflowhub.eu/workflows/124?version=1, https://workflowhub.eu/workflows/1439?version=1, https://workflowhub.eu/workflows/1470?version=1, https://workflowhub.eu/workflows/1473?version=1, https://workflowhub.eu/workflows/1483?version=1, https://workflowhub.eu/workflows/1492?version=2, https://workflowhub.eu/workflows/1594?version=1, https://workflowhub.eu/workflows/1644?version=1, https://workflowhub.eu/workflows/1647?version=1, https://workflowhub.eu/workflows/1674?version=1, https://workflowhub.eu/workflows/53?version=1, https://workflowhub.eu/workflows/645?version=12 |
assembly/assembly-decontamination, ecology/bacterial-isolate-species-contamination-checking, microbiome/beer-data-analysis, microbiome/nanopore-16S-metagenomics, microbiome/pathogen-detection-from-nanopore-foodborne-data, microbiome/taxonomic-profiling, sequence-analysis/quality-contamination-control, variant-analysis/tb-variant-analysis |
|
kraken_biom |
kraken_biom |
Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/) |
2022-09-03 |
https://github.com/smdabdoub/kraken-biom |
1.2.0 |
kraken-biom |
1.2.0 |
Up-to-date |
Metagenomics |
Genome annotation, Taxonomic classification |
Genome annotation, Taxonomic classification |
Metagenomics, Taxonomy |
Metagenomics, Taxonomy |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/kraken-biom |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/kraken_biom |
kraken-biom |
kraken-biom |
Create BIOM-format tables from Kraken output |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
600 |
600 |
3832 |
3832 |
0 |
0 |
0 |
0 |
64 |
64 |
599 |
599 |
4 |
4 |
6 |
6 |
4437 |
4437 |
668 |
668 |
https://dev.workflowhub.eu/workflows/1095?version=1, https://usegalaxy.eu/published/workflow?id=39d36a7ce0ef268d, https://usegalaxy.eu/published/workflow?id=4f0daf8e9dd54127, https://usegalaxy.eu/published/workflow?id=a0ea6fc756dd17ea, https://usegalaxy.eu/published/workflow?id=b67b5ecd3305f830, https://usegalaxy.eu/published/workflow?id=e69b555faa6bb962, https://workflowhub.eu/workflows/1470?version=1 |
microbiome/taxonomic-profiling |
|
kraken_taxonomy_report |
kraken_taxonomy_report |
Kraken taxonomy report |
2016-06-01 |
https://github.com/blankenberg/Kraken-Taxonomy-Report |
0.0.3 |
biopython |
1.70 |
To update |
Metagenomics |
Visualisation, Classification |
Visualisation, Classification |
Metagenomics, Taxonomy |
Metagenomics, Taxonomy |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/kraken_taxonomy_report |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/kraken_taxonomy_report |
Kraken-Taxonomy-Report |
Kraken-Taxonomy-Report |
view report of classification for multiple samples |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
879 |
882 |
4542 |
4551 |
1084 |
1435 |
4573 |
6288 |
73 |
73 |
175 |
175 |
0 |
0 |
0 |
0 |
11014 |
9290 |
2390 |
2036 |
https://usegalaxy.eu/published/workflow?id=2e5e6291cd112225, https://usegalaxy.eu/published/workflow?id=b659069edd9b1d4e |
|
|
krakentools |
krakentools_alpha_diversity, krakentools_beta_diversity, krakentools_combine_kreports, krakentools_extract_kraken_reads, krakentools_kreport2krona, krakentools_kreport2mpa |
KrakenTools is a suite of scripts to be used alongside the Kraken |
2023-01-13 |
https://github.com/jenniferlu717/KrakenTools |
1.2.1 |
krakentools |
1.2.1 |
Up-to-date |
Metagenomics |
Visualisation, Aggregation |
Visualisation, Aggregation |
Taxonomy, Metagenomics |
Taxonomy, Metagenomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/krakentools |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/krakentools |
krakentools |
KrakenTools |
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files |
|
6 |
6 |
6 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
6 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
1 |
0 |
1689 |
1689 |
107718 |
107718 |
1243 |
1243 |
21868 |
21868 |
301 |
301 |
9815 |
9815 |
30 |
30 |
494 |
494 |
139895 |
139895 |
3263 |
3263 |
https://dev.workflowhub.eu/workflows/1073?version=1, https://dev.workflowhub.eu/workflows/1087?version=2, https://dev.workflowhub.eu/workflows/1095?version=1, https://dev.workflowhub.eu/workflows/1097?version=1, https://dev.workflowhub.eu/workflows/1349?version=1, https://usegalaxy.eu/published/workflow?id=0590554db9794d13, https://usegalaxy.eu/published/workflow?id=10101558b211a782, https://usegalaxy.eu/published/workflow?id=181e751be8dd9abc, https://usegalaxy.eu/published/workflow?id=2b25eaebd3987612, https://usegalaxy.eu/published/workflow?id=309fc4fc2e0da89c, https://usegalaxy.eu/published/workflow?id=344cd3a3c2ce5302, https://usegalaxy.eu/published/workflow?id=39d36a7ce0ef268d, https://usegalaxy.eu/published/workflow?id=461d71caea871db8, https://usegalaxy.eu/published/workflow?id=4f0daf8e9dd54127, https://usegalaxy.eu/published/workflow?id=8deb08d4f228e198, https://usegalaxy.eu/published/workflow?id=94c3d329c31c712f, https://usegalaxy.eu/published/workflow?id=98bfad0c684011e9, https://usegalaxy.eu/published/workflow?id=a705370bc2c13d5c, https://usegalaxy.eu/published/workflow?id=ad8b6d73c9654305, https://usegalaxy.eu/published/workflow?id=b14845359b702444, https://usegalaxy.eu/published/workflow?id=b37800d990cceb83, https://usegalaxy.eu/published/workflow?id=c38e3ac59d8b86d6, https://usegalaxy.eu/published/workflow?id=cb2df493f5e334f7, https://usegalaxy.eu/published/workflow?id=ed2df13cfbc86b99, https://usegalaxy.eu/published/workflow?id=f97e6fe1fcbc53a7, https://usegalaxy.eu/published/workflow?id=fde21b5f5c169114, https://usegalaxy.org.au/published/workflow?id=131636a795bac485, https://usegalaxy.org.au/published/workflow?id=25d52afddaa3451b, https://usegalaxy.org.au/published/workflow?id=69d91340fc7effa2, https://usegalaxy.org.au/published/workflow?id=a335b9c9103b57ad, https://usegalaxy.org.au/published/workflow?id=d9ba165e6ae55417, https://usegalaxy.org.au/published/workflow?id=ed3e48a73b5aaa56, https://usegalaxy.org/published/workflow?id=3011f5dbf884c9bc, https://usegalaxy.org/published/workflow?id=4b5f6b5d4f36e38b, https://usegalaxy.org/published/workflow?id=574e42683dc3961b, https://usegalaxy.org/published/workflow?id=60f0d0d5d6e93941, https://usegalaxy.org/published/workflow?id=7321c6ad5425d347, https://usegalaxy.org/published/workflow?id=8f5904693b5f74f4, https://usegalaxy.org/published/workflow?id=a8b9252fad5fe06a, https://usegalaxy.org/published/workflow?id=e12324f5e3b930fd, https://workflowhub.eu/workflows/1059?version=1, https://workflowhub.eu/workflows/1061?version=1, https://workflowhub.eu/workflows/1199?version=2, https://workflowhub.eu/workflows/1431?version=1, https://workflowhub.eu/workflows/1439?version=1, https://workflowhub.eu/workflows/1470?version=1, https://workflowhub.eu/workflows/1483?version=1, https://workflowhub.eu/workflows/1492?version=2 |
microbiome/beer-data-analysis, microbiome/diversity, microbiome/pathogen-detection-from-nanopore-foodborne-data, microbiome/taxonomic-profiling |
|
krocus |
krocus |
Predict MLST directly from uncorrected long reads |
2019-09-03 |
https://github.com/quadram-institute-bioscience/krocus |
1.0.1 |
krocus |
1.0.3 |
To update |
Sequence Analysis |
Multilocus sequence typing, k-mer counting |
Multilocus sequence typing, k-mer counting |
Public health and epidemiology |
Public health and epidemiology |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/krocus |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/krocus |
krocus |
krocus |
Predict MLST directly from uncorrected long reads |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
last |
last_al, last_db, last_split, last_train, last_maf_convert |
LAST finds similar regions between sequences. |
2020-06-17 |
http://last.cbrc.jp/ |
1205 |
last |
1642 |
To update |
Sequence Analysis |
Sequence alignment |
Sequence alignment |
Genomics, Comparative genomics |
Comparative genomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/last |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/last |
last |
LAST |
Short read alignment program incorporating quality scores |
|
0 |
0 |
5 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
5 |
5 |
0 |
42 |
42 |
361 |
361 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
22 |
22 |
383 |
383 |
45 |
45 |
|
|
|
lastz |
lastz_wrapper_2, lastz_d_wrapper |
Galaxy wrappers for the Lastz and Lastz_d |
2018-02-12 |
https://github.com/lastz/lastz |
1.04.22 |
lastz |
1.04.52 |
To update |
Next Gen Mappers |
Sequence alignment, Read mapping |
Sequence alignment, Read mapping |
Genomics |
Genomics |
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/lastz |
lastz |
LASTZ |
A tool for (1) aligning two DNA sequences, and (2) inferring appropriate scoring parameters automatically. |
|
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
453 |
494 |
72800 |
84650 |
789 |
3479 |
155447 |
196753 |
159 |
194 |
38622 |
38995 |
13 |
13 |
4662 |
4662 |
325060 |
271531 |
4180 |
1414 |
https://dev.workflowhub.eu/workflows/1113?version=2, https://usegalaxy.eu/published/workflow?id=0e492839192d26e0, https://usegalaxy.org.au/published/workflow?id=b808cd1c0090b068, https://usegalaxy.org/published/workflow?id=23212ae74fc2d2b5, https://workflowhub.eu/workflows/1638?version=1 |
assembly/ecoli_comparison |
|
lcrgenie |
lcrgenie |
Ligase Chain Reaction Genie |
2022-12-02 |
https://github.com/neilswainston/LCRGenie |
1.0.2 |
lcr_genie |
|
To update |
Synthetic Biology |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/lcrgenie |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/lcrgenie |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
legsta |
legsta |
Performs in silico Legionella pneumophila sequence based typing. |
2022-02-21 |
https://github.com/tseemann/legsta |
0.5.1 |
legsta |
0.5.1 |
Up-to-date |
Sequence Analysis |
Sequence analysis |
Sequence analysis |
Public health and epidemiology |
Public health and epidemiology |
iuc |
https://github.com/tseemann/legsta |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/legsta |
legsta |
legsta |
Performs in silico Legionella pneumophila sequence based typing |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
9 |
9 |
103 |
103 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
103 |
103 |
9 |
9 |
|
|
|
length_and_gc_content |
length_and_gc_content |
Gets gene length and gc content from a fasta and a GTF file |
2016-11-13 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/length_and_gc_content |
0.1.2 |
r-optparse |
1.3.2 |
To update |
Fasta Manipulation, Statistics, RNA, Micro-array Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/length_and_gc_content |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/length_and_gc_content |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
795 |
834 |
4656 |
4801 |
1088 |
1191 |
2312 |
2607 |
89 |
89 |
242 |
242 |
5 |
5 |
7 |
7 |
7657 |
7217 |
2119 |
1977 |
https://dev.workflowhub.eu/workflows/1326?version=3, https://dev.workflowhub.eu/workflows/1329?version=5, https://usegalaxy.eu/published/workflow?id=985044b4b2c51425, https://usegalaxy.eu/published/workflow?id=a28c207730e7e13d, https://usegalaxy.eu/published/workflow?id=e7e26967cf6cb8d8, https://usegalaxy.org.au/published/workflow?id=2cef9a1633e0a067, https://workflowhub.eu/workflows/1708?version=1, https://workflowhub.eu/workflows/1713?version=1, https://workflowhub.eu/workflows/1715?version=1 |
transcriptomics/ref-based, transcriptomics/rna-seq-analysis-clustering-viz |
|
limma_voom |
limma_voom |
Perform RNA-Seq differential expression analysis using limma voom pipeline |
2017-05-24 |
http://bioconductor.org/packages/release/bioc/html/limma.html |
3.58.1 |
bioconductor-limma |
3.62.1 |
To update |
Transcriptomics, RNA, Statistics |
RNA-Seq analysis |
RNA-Seq analysis |
Molecular biology, Genetics |
Molecular biology, Genetics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/limma_voom |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/limma_voom |
limma |
limma |
Data analysis, linear models and differential expression for microarray data. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
2653 |
2800 |
25289 |
26939 |
4842 |
5568 |
48656 |
54386 |
923 |
947 |
9863 |
10425 |
22 |
22 |
289 |
289 |
92039 |
84097 |
9337 |
8440 |
https://dev.workflowhub.eu/workflows/1321?version=1, https://dev.workflowhub.eu/workflows/1332?version=1, https://usegalaxy.eu/published/workflow?id=09c77b6fc5add851, https://usegalaxy.eu/published/workflow?id=14226641bba951f3, https://usegalaxy.eu/published/workflow?id=1590085d315aa80e, https://usegalaxy.eu/published/workflow?id=1c1083b159e5bfb2, https://usegalaxy.eu/published/workflow?id=1d2e17a4f71f2455, https://usegalaxy.eu/published/workflow?id=21dd4bd16579fc12, https://usegalaxy.eu/published/workflow?id=227d97974573aaf2, https://usegalaxy.eu/published/workflow?id=263eed267aa3e76b, https://usegalaxy.eu/published/workflow?id=2a73d658446747de, https://usegalaxy.eu/published/workflow?id=2ecf737b53f77cf8, https://usegalaxy.eu/published/workflow?id=2f37c35ade97aa8d, https://usegalaxy.eu/published/workflow?id=2f7c04ad219a9d2d, https://usegalaxy.eu/published/workflow?id=3386856a60b35897, https://usegalaxy.eu/published/workflow?id=47f2c44d79896f08, https://usegalaxy.eu/published/workflow?id=48fe9c4de045d414, https://usegalaxy.eu/published/workflow?id=67e20e3082d24fbd, https://usegalaxy.eu/published/workflow?id=6d47a24218d08930, https://usegalaxy.eu/published/workflow?id=6fc2b9bea5b75a49, https://usegalaxy.eu/published/workflow?id=7036a6cf67d53bc7, https://usegalaxy.eu/published/workflow?id=732fa536cdc70c96, https://usegalaxy.eu/published/workflow?id=8ab363878cd34ef0, https://usegalaxy.eu/published/workflow?id=8bc1c3b9e665ea37, https://usegalaxy.eu/published/workflow?id=8f095e5b9594b098, https://usegalaxy.eu/published/workflow?id=9a83043d5e847318, https://usegalaxy.eu/published/workflow?id=ad3be77eb2e8c10e, https://usegalaxy.eu/published/workflow?id=bb4ecac751a94c79, https://usegalaxy.eu/published/workflow?id=c8deb8952abce1ec, https://usegalaxy.eu/published/workflow?id=d6eb0562d0036940, https://usegalaxy.eu/published/workflow?id=dd8b55e7768843b1, https://usegalaxy.eu/published/workflow?id=f28459c5b16549b7, https://usegalaxy.eu/published/workflow?id=f9ddc4dd9140b293, https://usegalaxy.eu/published/workflow?id=fa83e26e05418370, https://usegalaxy.eu/published/workflow?id=fe64d430d50faf0b, https://usegalaxy.eu/published/workflow?id=fe6c64676be56ee9, https://usegalaxy.org.au/published/workflow?id=bdb498b1f0e8944f, https://usegalaxy.org/published/workflow?id=07fdeadce7a6d5cb, https://usegalaxy.org/published/workflow?id=092be3cf6e40282c, https://usegalaxy.org/published/workflow?id=0a009cf9e88171f1, https://usegalaxy.org/published/workflow?id=0c052e50594f6d2d, https://usegalaxy.org/published/workflow?id=173ecc0c88090d0e, https://usegalaxy.org/published/workflow?id=204d0da8a023d7da, https://usegalaxy.org/published/workflow?id=228ae7f537a60226, https://usegalaxy.org/published/workflow?id=3f8e0395007c8e9e, https://usegalaxy.org/published/workflow?id=427fce51fd9508eb, https://usegalaxy.org/published/workflow?id=43c39bc86399188f, https://usegalaxy.org/published/workflow?id=5203bc68df3cf819, https://usegalaxy.org/published/workflow?id=5944c5effd56b0d6, https://usegalaxy.org/published/workflow?id=6d0a3f36d2736087, https://usegalaxy.org/published/workflow?id=734e08331f8f34b7, https://usegalaxy.org/published/workflow?id=93650de42fb8c015, https://usegalaxy.org/published/workflow?id=a89def2c2462674a, https://usegalaxy.org/published/workflow?id=aac2ae0419f7d515, https://usegalaxy.org/published/workflow?id=b094b6e1e7d48416, https://usegalaxy.org/published/workflow?id=b3823d276917baf0, https://usegalaxy.org/published/workflow?id=d5514e327878b531, https://usegalaxy.org/published/workflow?id=ddb737f2ad0589e8, https://usegalaxy.org/published/workflow?id=dec0cf06fa059e65, https://workflowhub.eu/workflows/1684?version=1, https://workflowhub.eu/workflows/1703?version=1, https://workflowhub.eu/workflows/689?version=1 |
transcriptomics/minerva-pathways, transcriptomics/rna-seq-counts-to-genes |
|
lineagespot |
lineagespot |
Identification of SARS-CoV-2 related metagenomic mutations based on a single (or a list of) variant(s) file(s) |
2023-07-04 |
https://www.bioconductor.org/packages/release/bioc/html/lineagespot.html |
1.6.0 |
r-base |
|
To update |
Metagenomics, Sequence Analysis |
Variant calling |
Variant calling |
Metagenomics, Gene transcripts, Evolutionary biology, Sequencing, Genetic variation |
Metagenomics, Gene transcripts, Evolutionary biology, Sequencing, Genetic variation |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/lineagespot |
lineagespot |
lineagespot |
Lineagespot is a framework written in R, and aims to identify and assign different SARS-CoV-2 lineages based on a single variant file (i.e., variant calling format). |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
4 |
4 |
39 |
39 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
39 |
39 |
4 |
4 |
|
|
|
links |
links |
Scaffold genome assemblies with long reads. |
2022-02-23 |
https://github.com/bcgsc/LINKS |
2.0.1 |
links |
2.0.1 |
Up-to-date |
Assembly |
Scaffolding, Genome assembly, Read mapping, Read pre-processing, Sequence trimming |
Scaffolding, Genome assembly, Read mapping, Read pre-processing, Sequence trimming |
Sequence assembly, Mapping, Sequencing |
Sequence assembly, Mapping, Sequencing |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/links |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/links |
links |
LINKS |
LINKS (Long Interval Nucleotide K-mer Scaffolder) is a genomics application for scaffolding genome assemblies with long reads, such as those produced by Oxford Nanopore Technologies Ltd. It can be used to scaffold high-quality draft genome assemblies with any long sequences (eg. ONT reads, PacBio reads, other draft genomes, etc). It is also used to scaffold contig pairs linked by ARCS/ARKS. |
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
139 |
139 |
648 |
648 |
0 |
0 |
0 |
0 |
72 |
72 |
577 |
577 |
0 |
0 |
0 |
0 |
1225 |
1225 |
211 |
211 |
|
|
|
lofreq |
lofreq_alnqual, lofreq_call, lofreq_filter, lofreq_indelqual, lofreq_viterbi |
LoFreq is a fast and sensitive variant-caller for inferring SNVs and indelsfrom next-generation sequencing data. It makes full use of base-call qualitiesand other sources of errors inherent in sequencing (e.g. mapping or base/indelalignment uncertainty), which are usually ignored by other methods or onlyused for filtering. |
2019-11-25 |
https://csb5.github.io/lofreq/ |
2.1.5 |
lofreq |
2.1.5 |
Up-to-date |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/lofreq |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/lofreq |
|
|
|
|
5 |
5 |
5 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
4 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
5 |
5 |
5 |
0 |
1830 |
1834 |
4188135 |
4188230 |
4597 |
4616 |
521458 |
521577 |
678 |
678 |
137105 |
137105 |
39 |
39 |
8795 |
8795 |
4855707 |
4855493 |
7167 |
7144 |
https://dev.workflowhub.eu/workflows/1074?version=2, https://dev.workflowhub.eu/workflows/1115?version=2, https://dev.workflowhub.eu/workflows/143?version=1, https://dev.workflowhub.eu/workflows/144?version=1, https://dev.workflowhub.eu/workflows/145?version=1, https://dev.workflowhub.eu/workflows/146?version=1, https://dev.workflowhub.eu/workflows/195?version=2, https://dev.workflowhub.eu/workflows/196?version=2, https://dev.workflowhub.eu/workflows/197?version=2, https://dev.workflowhub.eu/workflows/198?version=2, https://dev.workflowhub.eu/workflows/41?version=1, https://usegalaxy.eu/published/workflow?id=03d1d2e0dc6e2024, https://usegalaxy.eu/published/workflow?id=0599f049e4697839, https://usegalaxy.eu/published/workflow?id=07b74e4cf53cb633, https://usegalaxy.eu/published/workflow?id=0be293debca8fb9b, https://usegalaxy.eu/published/workflow?id=0e5b701ed5ca69a7, https://usegalaxy.eu/published/workflow?id=0f6a7bd5362e4a2b, https://usegalaxy.eu/published/workflow?id=112422839b68db02, https://usegalaxy.eu/published/workflow?id=1761092d0e7deece, https://usegalaxy.eu/published/workflow?id=1c5588d6ac7f773f, https://usegalaxy.eu/published/workflow?id=2573209308aaad23, https://usegalaxy.eu/published/workflow?id=2a39dbc8fc6dd5d3, https://usegalaxy.eu/published/workflow?id=2d9d4445a1871230, https://usegalaxy.eu/published/workflow?id=429ae28a178cd07c, https://usegalaxy.eu/published/workflow?id=476db04368d5e90c, https://usegalaxy.eu/published/workflow?id=4a764275d4bf9f31, https://usegalaxy.eu/published/workflow?id=4b4bfc79205d83f1, https://usegalaxy.eu/published/workflow?id=4d97068a725c975c, https://usegalaxy.eu/published/workflow?id=529f30e894beacc2, https://usegalaxy.eu/published/workflow?id=52bdf400f97c5770, https://usegalaxy.eu/published/workflow?id=53de0e742573e588, https://usegalaxy.eu/published/workflow?id=57769c948e14f9ac, https://usegalaxy.eu/published/workflow?id=579dd1e95e76402f, https://usegalaxy.eu/published/workflow?id=614807d57979554c, https://usegalaxy.eu/published/workflow?id=63eed9c2e025a723, https://usegalaxy.eu/published/workflow?id=6be946c7ec91835e, https://usegalaxy.eu/published/workflow?id=6dbac47941a804da, https://usegalaxy.eu/published/workflow?id=7b7ef222ac4f9887, https://usegalaxy.eu/published/workflow?id=7bdd9ad918edab0b, https://usegalaxy.eu/published/workflow?id=7ef7b460143211df, https://usegalaxy.eu/published/workflow?id=81122d30c64a52a6, https://usegalaxy.eu/published/workflow?id=9eda857e4141d56e, https://usegalaxy.eu/published/workflow?id=a6f4371ef9bc1aab, https://usegalaxy.eu/published/workflow?id=a9e1a6b90dbd2518, https://usegalaxy.eu/published/workflow?id=b97532c398b821a2, https://usegalaxy.eu/published/workflow?id=c084c2009f6b2d0a, https://usegalaxy.eu/published/workflow?id=c2af7a5dbfb5b023, https://usegalaxy.eu/published/workflow?id=cd926dd6b70e72d6, https://usegalaxy.eu/published/workflow?id=d88145e7475e0b7b, https://usegalaxy.eu/published/workflow?id=ed20bd120064bab0, https://usegalaxy.eu/published/workflow?id=ee6dc47660540ba6, https://usegalaxy.eu/published/workflow?id=f54b4d76f7f9a589, https://usegalaxy.eu/published/workflow?id=f97e6fe1fcbc53a7, https://usegalaxy.eu/published/workflow?id=fc216dfb0ec9ed41, https://usegalaxy.eu/published/workflow?id=fcf745185d6e0ea4, https://usegalaxy.eu/published/workflow?id=ff2fd4a4bb27d859, https://usegalaxy.fr/published/workflow?id=54b48eeeed3564dd, https://usegalaxy.fr/published/workflow?id=57b5a45c9f71a09c, https://usegalaxy.fr/published/workflow?id=61235264d5d2f666, https://usegalaxy.fr/published/workflow?id=727cfdb7c79287d1, https://usegalaxy.fr/published/workflow?id=7d27dd394b921846, https://usegalaxy.fr/published/workflow?id=98529cff0ef36b91, https://usegalaxy.fr/published/workflow?id=bffee40c87c7b20a, https://usegalaxy.fr/published/workflow?id=ca0bd0e42cb774f9, https://usegalaxy.fr/published/workflow?id=d0d12c0b80c286f9, https://usegalaxy.fr/published/workflow?id=e0b225d4b2556365, https://usegalaxy.fr/published/workflow?id=e3c04a30258421aa, https://usegalaxy.fr/published/workflow?id=e96cd8dd62fa0ff8, https://usegalaxy.org.au/published/workflow?id=06ba34da322f46f1, https://usegalaxy.org.au/published/workflow?id=094a545d44ce28cc, https://usegalaxy.org.au/published/workflow?id=0c6f7bfc826433c4, https://usegalaxy.org.au/published/workflow?id=1dd4392c51766383, https://usegalaxy.org.au/published/workflow?id=25403321a649a92b, https://usegalaxy.org.au/published/workflow?id=27205feb28b0ce06, https://usegalaxy.org.au/published/workflow?id=2b2ce7e1206d177d, https://usegalaxy.org.au/published/workflow?id=30a601039d24e2eb, https://usegalaxy.org.au/published/workflow?id=31dbd313e5c8160b, https://usegalaxy.org.au/published/workflow?id=3223ceaa2b58d940, https://usegalaxy.org.au/published/workflow?id=39b464084d930a33, https://usegalaxy.org.au/published/workflow?id=3c657dd766d02f6a, https://usegalaxy.org.au/published/workflow?id=3c7b55daae7c119b, https://usegalaxy.org.au/published/workflow?id=3f39cf407c185724, https://usegalaxy.org.au/published/workflow?id=41bd0340dcde60ec, https://usegalaxy.org.au/published/workflow?id=47ce6a2d30887637, https://usegalaxy.org.au/published/workflow?id=48a60965b6b3ff54, https://usegalaxy.org.au/published/workflow?id=4bc8ac41ecff7daf, https://usegalaxy.org.au/published/workflow?id=4cbc70a37a9da088, https://usegalaxy.org.au/published/workflow?id=51b745f8c964e5c6, https://usegalaxy.org.au/published/workflow?id=6a04c54236f30e8d, https://usegalaxy.org.au/published/workflow?id=76bb6bde19975e05, https://usegalaxy.org.au/published/workflow?id=7fd58f5fc93f414e, https://usegalaxy.org.au/published/workflow?id=810242a3dc4f6170, https://usegalaxy.org.au/published/workflow?id=83c20d8e5fd97313, https://usegalaxy.org.au/published/workflow?id=84c98a23187d2a36, https://usegalaxy.org.au/published/workflow?id=888eb87b62c4e6dd, https://usegalaxy.org.au/published/workflow?id=888f8377eb6eabf2, https://usegalaxy.org.au/published/workflow?id=8b955274ca3ca3dc, https://usegalaxy.org.au/published/workflow?id=932bad88f8dc8d33, https://usegalaxy.org.au/published/workflow?id=a29670ff0ecb1a38, https://usegalaxy.org.au/published/workflow?id=ae894cff1d1aba01, https://usegalaxy.org.au/published/workflow?id=ba30cc4a84c449f9, https://usegalaxy.org.au/published/workflow?id=ba7a9d4c857d26b7, https://usegalaxy.org.au/published/workflow?id=baa763dbdf6afb71, https://usegalaxy.org.au/published/workflow?id=bcf230e526632064, https://usegalaxy.org.au/published/workflow?id=bd1cf22d47389742, https://usegalaxy.org.au/published/workflow?id=be9213411c520096, https://usegalaxy.org.au/published/workflow?id=c1ce3f2ae7c81c3e, https://usegalaxy.org.au/published/workflow?id=c38b998d3e90c329, https://usegalaxy.org.au/published/workflow?id=c9156ca3df2b595c, https://usegalaxy.org.au/published/workflow?id=ca7fc6e2adbf1f26, https://usegalaxy.org.au/published/workflow?id=d3521c05077192df, https://usegalaxy.org.au/published/workflow?id=d35d05be576e8b13, https://usegalaxy.org.au/published/workflow?id=d7c329b354f4426d, https://usegalaxy.org.au/published/workflow?id=e439a0e17a90d24c, https://usegalaxy.org.au/published/workflow?id=fe4e34a407157389, https://usegalaxy.org.au/published/workflow?id=fe5542c99cdc57ce, https://usegalaxy.org.au/published/workflow?id=fedf2874752ac1f6, https://usegalaxy.org/published/workflow?id=005924662f68a480, https://usegalaxy.org/published/workflow?id=0596162a499b4074, https://usegalaxy.org/published/workflow?id=0b1fa3e8d05d6e53, https://usegalaxy.org/published/workflow?id=0f8b4fd0bf276968, https://usegalaxy.org/published/workflow?id=10c2136973c88d8a, https://usegalaxy.org/published/workflow?id=15a0e22570f71098, https://usegalaxy.org/published/workflow?id=195f7acb16c5a2e2, https://usegalaxy.org/published/workflow?id=1f48b44fa22ac5fc, https://usegalaxy.org/published/workflow?id=26b35874b9e32355, https://usegalaxy.org/published/workflow?id=307d19833ffb5395, https://usegalaxy.org/published/workflow?id=33ae58f05e5e1d60, https://usegalaxy.org/published/workflow?id=34ab5572a9547bfe, https://usegalaxy.org/published/workflow?id=4357180d40560019, https://usegalaxy.org/published/workflow?id=4cbb8181cfdf55d9, https://usegalaxy.org/published/workflow?id=4cf8cc42e97b2da6, https://usegalaxy.org/published/workflow?id=4de095b92ed661ac, https://usegalaxy.org/published/workflow?id=50206b10de958d03, https://usegalaxy.org/published/workflow?id=53dda64a5a6ebd54, https://usegalaxy.org/published/workflow?id=5415e85a86898e41, https://usegalaxy.org/published/workflow?id=5a610d5a42d50cf3, https://usegalaxy.org/published/workflow?id=5b3e2ddf525da25d, https://usegalaxy.org/published/workflow?id=5bcd1aade71a8035, https://usegalaxy.org/published/workflow?id=612452c925d723b7, https://usegalaxy.org/published/workflow?id=62436fe121e035e7, https://usegalaxy.org/published/workflow?id=6b11d738ee57f245, https://usegalaxy.org/published/workflow?id=6be2c7930c391b35, https://usegalaxy.org/published/workflow?id=6ec8b101d24a0f4f, https://usegalaxy.org/published/workflow?id=786aa9e2bd723629, https://usegalaxy.org/published/workflow?id=7c3faadda8f89749, https://usegalaxy.org/published/workflow?id=7d6617b8316cee19, https://usegalaxy.org/published/workflow?id=7dde0721a382ea3e, https://usegalaxy.org/published/workflow?id=7e2651e5ed17e3db, https://usegalaxy.org/published/workflow?id=842bcba42c3085a4, https://usegalaxy.org/published/workflow?id=88d0b64011c3148c, https://usegalaxy.org/published/workflow?id=953d9cbe05e632a8, https://usegalaxy.org/published/workflow?id=98b2ac8fc75781f8, https://usegalaxy.org/published/workflow?id=9adf8691809326e5, https://usegalaxy.org/published/workflow?id=9fc9f1db50019929, https://usegalaxy.org/published/workflow?id=aadccbe72752c129, https://usegalaxy.org/published/workflow?id=b1a98a2d5ebda1c5, https://usegalaxy.org/published/workflow?id=b26501a4a85bfdeb, https://usegalaxy.org/published/workflow?id=b34ba9b2e4d8f050, https://usegalaxy.org/published/workflow?id=bb16936081b820f6, https://usegalaxy.org/published/workflow?id=bbe6f5a45ea5ee5e, https://usegalaxy.org/published/workflow?id=bceb6ae418bef9b8, https://usegalaxy.org/published/workflow?id=bd355e8ce58a139e, https://usegalaxy.org/published/workflow?id=bf3ccae8d5b6ef58, https://usegalaxy.org/published/workflow?id=c092a3631d68ce38, https://usegalaxy.org/published/workflow?id=c12e6b7896f8e114, https://usegalaxy.org/published/workflow?id=c7b2d2ccc4b0dec5, https://usegalaxy.org/published/workflow?id=cf2dbc29ca20ebee, https://usegalaxy.org/published/workflow?id=d3428dd172a78102, https://usegalaxy.org/published/workflow?id=d4ea6cdd40522eb1, https://usegalaxy.org/published/workflow?id=d817e98cef94bc96, https://usegalaxy.org/published/workflow?id=db01ac5b0dc50cd4, https://usegalaxy.org/published/workflow?id=dfa8c64634aec75c, https://usegalaxy.org/published/workflow?id=e282f505ba9f729f, https://usegalaxy.org/published/workflow?id=e67b6da41e1e6932, https://usegalaxy.org/published/workflow?id=f5805e66642fed04, https://usegalaxy.org/published/workflow?id=fae519dcba6bfc72, https://usegalaxy.org/published/workflow?id=ffae9c47980a5170, https://workflowhub.eu/workflows/110?version=11, https://workflowhub.eu/workflows/111?version=5, https://workflowhub.eu/workflows/112?version=6, https://workflowhub.eu/workflows/113?version=4, https://workflowhub.eu/workflows/1190?version=1, https://workflowhub.eu/workflows/1540?version=1, https://workflowhub.eu/workflows/1642?version=1, https://workflowhub.eu/workflows/353?version=1, https://workflowhub.eu/workflows/357?version=1 |
galaxy-interface/collections, introduction/galaxy-intro-ngs-data-managment, variant-analysis/sars-cov-2 |
|
lorikeet_spoligotype |
lorikeet_spoligotype |
Tools for M. tuberculosis DNA fingerprinting (spoligotyping) |
2018-05-07 |
https://github.com/AbeelLab/lorikeet |
20 |
lorikeet |
20 |
Up-to-date |
Sequence Analysis |
Sequence analysis, Genotyping |
Sequence analysis, Genotyping |
Genotype and phenotype |
Genotype and phenotype |
iuc |
https://github.com/AbeelLab/lorikeet |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/lorikeet |
lorikeet |
lorikeet |
Tools for M. tuberculosis DNA fingerprinting (spoligotyping) |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
16 |
16 |
903 |
903 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
903 |
903 |
16 |
16 |
|
|
|
lumpy_sv |
lumpy_prep, lumpy_sv |
LUMPY - a general probabilistic framework for structural variant discovery |
2020-11-12 |
http://layerlab.org/software/ |
0.3.1 |
lumpy-sv |
0.3.1 |
Up-to-date |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/arq5x/lumpy-sv |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/lumpy_sv |
|
|
|
|
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
0 |
0 |
114 |
114 |
2121 |
2121 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2121 |
2121 |
114 |
114 |
https://usegalaxy.eu/published/workflow?id=3d8aa05129e44fdf |
|
|
m6anet |
m6anet |
m6anet to detect m6A RNA modifications from nanopore data |
2023-10-25 |
https://m6anet.readthedocs.io/en/latest |
2.1.0 |
m6anet |
2.1.0 |
Up-to-date |
Sequence Analysis |
Quantification, Imputation, Gene expression profiling |
Quantification, Imputation, Gene expression profiling |
RNA-Seq, Transcriptomics, RNA, Machine learning |
RNA-Seq, Transcriptomics, RNA, Machine learning |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/m6anet |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/m6anet |
m6Anet |
m6Anet |
Detection of m6A from direct RNA sequencing using a Multiple Instance Learning framework. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
11 |
11 |
44 |
44 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
44 |
44 |
11 |
11 |
|
|
|
maaslin2 |
maaslin2 |
MaAsLin2 is comprehensive R package for efficiently determining multivariable association between microbial meta'omic features and clinical metadata. |
2021-11-05 |
http://huttenhower.sph.harvard.edu/maaslin |
1.18.0 |
bioconductor-maaslin2 |
1.18.0 |
Up-to-date |
Metagenomics |
Filtering, Statistical calculation, Standardisation and normalisation, Visualisation |
Filtering, Standardisation and normalisation, Visualisation |
Metagenomics, Statistics and probability |
Metagenomics, Statistics and probability |
iuc |
https://github.com/biobakery/Maaslin2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/maaslin2 |
maaslin2 |
MaAsLin2 |
MaAsLin2 is comprehensive R package for efficiently determining multivariable association between phenotypes, environments, exposures, covariates and microbial meta’omic features. MaAsLin2 relies on general linear models to accommodate most modern epidemiological study designs, including cross-sectional and longitudinal, and offers a variety of data exploration, normalization, and transformation methods. |
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
73 |
73 |
3109 |
3109 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3109 |
3109 |
73 |
73 |
https://usegalaxy.eu/published/workflow?id=466bdd8ba7b67264, https://usegalaxy.eu/published/workflow?id=4ddf2ec5c460d622, https://usegalaxy.eu/published/workflow?id=e1296dbcf34499b0, https://usegalaxy.eu/published/workflow?id=e69b555faa6bb962 |
|
|
macs2 |
macs2_bdgbroadcall, macs2_bdgcmp, macs2_bdgdiff, macs2_bdgpeakcall, macs2_callpeak, macs2_filterdup, macs2_predictd, macs2_randsample, macs2_refinepeak |
MACS - Model-based Analysis of ChIP-Seq |
2014-11-12 |
https://github.com/taoliu/MACS |
2.2.9.1 |
macs2 |
2.2.9.1 |
Up-to-date |
Sequence Analysis, Statistics |
Peak calling, Enrichment analysis, Gene regulatory network analysis |
Peak calling, Enrichment analysis, Gene regulatory network analysis |
ChIP-seq, Molecular interactions, pathways and networks, Transcription factors and regulatory sites |
ChIP-seq, Molecular interactions, pathways and networks, Transcription factors and regulatory sites |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/macs2 |
macs |
MACS |
Model-based Analysis of ChIP-seq data. |
|
9 |
9 |
9 |
9 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
9 |
9 |
0 |
0 |
0 |
0 |
0 |
0 |
9 |
0 |
0 |
0 |
0 |
9 |
9 |
9 |
0 |
4205 |
4890 |
94260 |
105610 |
9937 |
14389 |
157108 |
242279 |
550 |
670 |
11418 |
13328 |
381 |
381 |
4122 |
4164 |
365381 |
266908 |
20330 |
15073 |
https://dev.workflowhub.eu/workflows/1012?version=1, https://dev.workflowhub.eu/workflows/1150?version=2, https://dev.workflowhub.eu/workflows/1153?version=2, https://dev.workflowhub.eu/workflows/1161?version=2, https://dev.workflowhub.eu/workflows/1169?version=2, https://dev.workflowhub.eu/workflows/1175?version=2, https://dev.workflowhub.eu/workflows/1208?version=1, https://dev.workflowhub.eu/workflows/574?version=1, https://usegalaxy.eu/published/workflow?id=020f877513f2d0d1, https://usegalaxy.eu/published/workflow?id=0229f3f3835c2d53, https://usegalaxy.eu/published/workflow?id=02655d0e4af0ee0d, https://usegalaxy.eu/published/workflow?id=079e2a968d8e6176, https://usegalaxy.eu/published/workflow?id=0ae360bfbb3b2494, https://usegalaxy.eu/published/workflow?id=0fb12e3a127fc4be, https://usegalaxy.eu/published/workflow?id=1089e5c66dbcc1a3, https://usegalaxy.eu/published/workflow?id=111527fe542846af, https://usegalaxy.eu/published/workflow?id=117177b0c231dc55, https://usegalaxy.eu/published/workflow?id=133b299125ff9905, https://usegalaxy.eu/published/workflow?id=146cef3acb2eba75, https://usegalaxy.eu/published/workflow?id=14b9753269cd368f, https://usegalaxy.eu/published/workflow?id=16080c3c1488a8b5, https://usegalaxy.eu/published/workflow?id=166eb3f14feffa1b, https://usegalaxy.eu/published/workflow?id=1aa1344d6145ade3, https://usegalaxy.eu/published/workflow?id=1c267e93aa8015e6, https://usegalaxy.eu/published/workflow?id=1c44bbaa5f4f8b54, https://usegalaxy.eu/published/workflow?id=1dba8278fb2786fb, https://usegalaxy.eu/published/workflow?id=1eac2ebffcbb8d59, https://usegalaxy.eu/published/workflow?id=1ee43d90b69829e9, https://usegalaxy.eu/published/workflow?id=25aa944237d7fb82, https://usegalaxy.eu/published/workflow?id=2a33d4fcb806e942, https://usegalaxy.eu/published/workflow?id=2c5cae1389c11881, https://usegalaxy.eu/published/workflow?id=2cf9f0e2ab5a7f8b, https://usegalaxy.eu/published/workflow?id=2e6561d8dadc9e17, https://usegalaxy.eu/published/workflow?id=2f094f5e1f391529, https://usegalaxy.eu/published/workflow?id=2f51a82838722bec, https://usegalaxy.eu/published/workflow?id=30e7dc81e323cbdb, https://usegalaxy.eu/published/workflow?id=326d4102190b74fc, https://usegalaxy.eu/published/workflow?id=3817cfbab7b39ee1, https://usegalaxy.eu/published/workflow?id=3828466d773e508c, https://usegalaxy.eu/published/workflow?id=39b195a36408277c, https://usegalaxy.eu/published/workflow?id=3b8ef7905c902b27, https://usegalaxy.eu/published/workflow?id=3ce75b5de4922cba, https://usegalaxy.eu/published/workflow?id=4176b9d43325a8d8, https://usegalaxy.eu/published/workflow?id=44a2b6c8ae54eb31, https://usegalaxy.eu/published/workflow?id=45c5e0a1e10edc54, https://usegalaxy.eu/published/workflow?id=45f63151bf4f1a49, https://usegalaxy.eu/published/workflow?id=478190607a114390, https://usegalaxy.eu/published/workflow?id=48f63ef14a12f306, https://usegalaxy.eu/published/workflow?id=4a51e616d96338ed, https://usegalaxy.eu/published/workflow?id=4cb25c0bb103f54f, https://usegalaxy.eu/published/workflow?id=4daa0c33d6d50379, https://usegalaxy.eu/published/workflow?id=503a2f4caacaf63e, https://usegalaxy.eu/published/workflow?id=5138874b208adb4b, https://usegalaxy.eu/published/workflow?id=5279af5c95ae4f7a, https://usegalaxy.eu/published/workflow?id=5385abe9c2589b69, https://usegalaxy.eu/published/workflow?id=54b91dd86f463391, https://usegalaxy.eu/published/workflow?id=55a9fc5d30392777, https://usegalaxy.eu/published/workflow?id=55ead91471bf1008, https://usegalaxy.eu/published/workflow?id=587e4d5ce25f48da, https://usegalaxy.eu/published/workflow?id=5cc732a6b4338bf5, https://usegalaxy.eu/published/workflow?id=604b67c8525637bc, https://usegalaxy.eu/published/workflow?id=66f2a58637054c16, https://usegalaxy.eu/published/workflow?id=67be21795d403ca3, https://usegalaxy.eu/published/workflow?id=6bce1d419a179c50, https://usegalaxy.eu/published/workflow?id=71c4ec4805f83cd5, https://usegalaxy.eu/published/workflow?id=74e4a8f2edb25f1a, https://usegalaxy.eu/published/workflow?id=7582a48054c44d6e, https://usegalaxy.eu/published/workflow?id=77d2adf5249eb826, https://usegalaxy.eu/published/workflow?id=79fd2517af48c594, https://usegalaxy.eu/published/workflow?id=7d44ea091d437edf, https://usegalaxy.eu/published/workflow?id=7e0ba4c14803448e, https://usegalaxy.eu/published/workflow?id=7ea91d562a02eb2f, https://usegalaxy.eu/published/workflow?id=8132c3b710fd6d48, https://usegalaxy.eu/published/workflow?id=830eb4faff21eb0c, https://usegalaxy.eu/published/workflow?id=895b8f5736bb92bb, https://usegalaxy.eu/published/workflow?id=8c4331f1bac67aba, https://usegalaxy.eu/published/workflow?id=8f9dc5ba61a02815, https://usegalaxy.eu/published/workflow?id=8ff9d3ad20e87819, https://usegalaxy.eu/published/workflow?id=93a7047396080fda, https://usegalaxy.eu/published/workflow?id=94b9287365ea4d0d, https://usegalaxy.eu/published/workflow?id=9ad5aff92e185907, https://usegalaxy.eu/published/workflow?id=9c24df68dc7d25a4, https://usegalaxy.eu/published/workflow?id=9e4df2893767591a, https://usegalaxy.eu/published/workflow?id=a639ea0419de1078, https://usegalaxy.eu/published/workflow?id=a76629eccfdeafb8, https://usegalaxy.eu/published/workflow?id=ad4b347f9b68e127, https://usegalaxy.eu/published/workflow?id=ae16643c04ad1216, https://usegalaxy.eu/published/workflow?id=af472984b3f3d65f, https://usegalaxy.eu/published/workflow?id=b323867a9efcc6c6, https://usegalaxy.eu/published/workflow?id=b57c3522bdd7c2d5, https://usegalaxy.eu/published/workflow?id=b5e3360f933d1950, https://usegalaxy.eu/published/workflow?id=b84fd6a0e2632ad9, https://usegalaxy.eu/published/workflow?id=b9ad204395f7d931, https://usegalaxy.eu/published/workflow?id=c0d1e965daf89006, https://usegalaxy.eu/published/workflow?id=c3eba26c5d7febff, https://usegalaxy.eu/published/workflow?id=c6ca9e6fd28979f8, https://usegalaxy.eu/published/workflow?id=c7a8f7aabc219831, https://usegalaxy.eu/published/workflow?id=c9aff55e39e195e3, https://usegalaxy.eu/published/workflow?id=cfe47f0c78ed5ec4, https://usegalaxy.eu/published/workflow?id=d12617d0df5f81d0, https://usegalaxy.eu/published/workflow?id=d4603d244cf8ac5b, https://usegalaxy.eu/published/workflow?id=d768c0e0df4d432e, https://usegalaxy.eu/published/workflow?id=d83280cd72ec0f33, https://usegalaxy.eu/published/workflow?id=db03a18167f26399, https://usegalaxy.eu/published/workflow?id=de9003e589631029, https://usegalaxy.eu/published/workflow?id=ea8bb8eefdb4ba7a, https://usegalaxy.eu/published/workflow?id=ebbf5cfa946d11d3, https://usegalaxy.eu/published/workflow?id=f14ebad1c3c20067, https://usegalaxy.eu/published/workflow?id=f5005e80d9ffa109, https://usegalaxy.eu/published/workflow?id=f6b55599db1ab056, https://usegalaxy.eu/published/workflow?id=f9b705e53b6d6539, https://usegalaxy.eu/published/workflow?id=fa0ff9a0db8bbddb, https://usegalaxy.eu/published/workflow?id=fd6429a788660c8d, https://usegalaxy.org.au/published/workflow?id=0f7406ada6706c91, https://usegalaxy.org.au/published/workflow?id=14b17f17d03c8424, https://usegalaxy.org.au/published/workflow?id=18d48f1b26811372, https://usegalaxy.org.au/published/workflow?id=1ff259845498b818, https://usegalaxy.org.au/published/workflow?id=2543e425fa6d5144, https://usegalaxy.org.au/published/workflow?id=2617fee24459e680, https://usegalaxy.org.au/published/workflow?id=2789fb3590727342, https://usegalaxy.org.au/published/workflow?id=2980172ed0226b59, https://usegalaxy.org.au/published/workflow?id=2b0a986519532412, https://usegalaxy.org.au/published/workflow?id=2f520cb446adf726, https://usegalaxy.org.au/published/workflow?id=32d28f800adcea42, https://usegalaxy.org.au/published/workflow?id=3e7fcfd23872ad0d, https://usegalaxy.org.au/published/workflow?id=41e005d4ebb5885a, https://usegalaxy.org.au/published/workflow?id=48a25f8e58d068e6, https://usegalaxy.org.au/published/workflow?id=4bd6c5c12fb1a69a, https://usegalaxy.org.au/published/workflow?id=52056336f24eccf6, https://usegalaxy.org.au/published/workflow?id=57b558e1a76c09e1, https://usegalaxy.org.au/published/workflow?id=6b2716309947836d, https://usegalaxy.org.au/published/workflow?id=6b3df543536faf8c, https://usegalaxy.org.au/published/workflow?id=6efcacf14bfc18b3, https://usegalaxy.org.au/published/workflow?id=7a4ee63a04362967, https://usegalaxy.org.au/published/workflow?id=7ad9410e36ee9ea1, https://usegalaxy.org.au/published/workflow?id=7c2e7b292803b3e9, https://usegalaxy.org.au/published/workflow?id=7d268e7209a68e2e, https://usegalaxy.org.au/published/workflow?id=8433a2f79b2e5894, https://usegalaxy.org.au/published/workflow?id=9787c8b7adeedb0c, https://usegalaxy.org.au/published/workflow?id=99821674db7682bb, https://usegalaxy.org.au/published/workflow?id=9bc31dff5bcec42b, https://usegalaxy.org.au/published/workflow?id=a484cdc9ff9d7e9e, https://usegalaxy.org.au/published/workflow?id=a5ccbb9aced9ac53, https://usegalaxy.org.au/published/workflow?id=a820d57cc8300253, https://usegalaxy.org.au/published/workflow?id=a8ec08a1408cd6e7, https://usegalaxy.org.au/published/workflow?id=b191da6e594747fb, https://usegalaxy.org.au/published/workflow?id=b20f28151e46d3e0, https://usegalaxy.org.au/published/workflow?id=b8968fb0bf796e53, https://usegalaxy.org.au/published/workflow?id=c87c1f8c4eff415a, https://usegalaxy.org.au/published/workflow?id=ce7106593536f900, https://usegalaxy.org.au/published/workflow?id=daff6854b5dfc6f1, https://usegalaxy.org.au/published/workflow?id=e0b89b4e50d1a99b, https://usegalaxy.org.au/published/workflow?id=e57c6d05b560e206, https://usegalaxy.org.au/published/workflow?id=e92b4d8dfa2f1cf7, https://usegalaxy.org.au/published/workflow?id=fa4fa7353dffef9a, https://usegalaxy.org.au/published/workflow?id=fa87a22c8dcd8d78, https://usegalaxy.org/published/workflow?id=00bc4e99626da1ba, https://usegalaxy.org/published/workflow?id=019be65613876562, https://usegalaxy.org/published/workflow?id=028f1beead539975, https://usegalaxy.org/published/workflow?id=02e29499b946f3bb, https://usegalaxy.org/published/workflow?id=05e86b4df0d14800, https://usegalaxy.org/published/workflow?id=05ef809e2b11154c, https://usegalaxy.org/published/workflow?id=063173d36c254105, https://usegalaxy.org/published/workflow?id=06b489dc859f6e39, https://usegalaxy.org/published/workflow?id=06f3ca70b542556e, https://usegalaxy.org/published/workflow?id=07739fbbd53755f6, https://usegalaxy.org/published/workflow?id=0775d8efad0dac10, https://usegalaxy.org/published/workflow?id=07dca0dc191fb1de, https://usegalaxy.org/published/workflow?id=08da44d18689dffc, https://usegalaxy.org/published/workflow?id=091f788edad78956, https://usegalaxy.org/published/workflow?id=098fd236c5e2895d, https://usegalaxy.org/published/workflow?id=0b85fb10ed25d34e, https://usegalaxy.org/published/workflow?id=0d47009eb2d7bdc1, https://usegalaxy.org/published/workflow?id=0dec1b9dbbb2f425, https://usegalaxy.org/published/workflow?id=0ebb1f5b6c9c8ab9, https://usegalaxy.org/published/workflow?id=1010a9b57c77239c, https://usegalaxy.org/published/workflow?id=10c5f3c5cadd7417, https://usegalaxy.org/published/workflow?id=1250ec3ad6199cda, https://usegalaxy.org/published/workflow?id=12a52ae52e0f1053, https://usegalaxy.org/published/workflow?id=1388fe5d8b50bc7c, https://usegalaxy.org/published/workflow?id=13a1fa4f6daf65cc, https://usegalaxy.org/published/workflow?id=13d9db3715f32b37, https://usegalaxy.org/published/workflow?id=148c071f5c5a4586, https://usegalaxy.org/published/workflow?id=150e288c2c2fe9e9, https://usegalaxy.org/published/workflow?id=156e245e3d9f22ce, https://usegalaxy.org/published/workflow?id=15ea806eaf077617, https://usegalaxy.org/published/workflow?id=162fda90525220de, https://usegalaxy.org/published/workflow?id=16910402667eec78, https://usegalaxy.org/published/workflow?id=170287dcfb9de475, https://usegalaxy.org/published/workflow?id=172ee5e5bef33d2e, https://usegalaxy.org/published/workflow?id=17f3d7e52777d2e8, https://usegalaxy.org/published/workflow?id=1829c91a30138721, https://usegalaxy.org/published/workflow?id=19c1ba21e82d8615, https://usegalaxy.org/published/workflow?id=19ce6cf93298e268, https://usegalaxy.org/published/workflow?id=1a23d8c795846251, https://usegalaxy.org/published/workflow?id=1c5a7196a442dd02, https://usegalaxy.org/published/workflow?id=1cad9a0b375ed3d1, https://usegalaxy.org/published/workflow?id=1cbd946c4cc0e7b9, https://usegalaxy.org/published/workflow?id=1d56a0975fca0e99, https://usegalaxy.org/published/workflow?id=1d69ab87c94d68fd, https://usegalaxy.org/published/workflow?id=1d8227ad3f3651a0, https://usegalaxy.org/published/workflow?id=1dd63a7b4c6f4c83, https://usegalaxy.org/published/workflow?id=1e0a55635f5b04cf, https://usegalaxy.org/published/workflow?id=1e1d7fac7e241768, https://usegalaxy.org/published/workflow?id=1f00e44f590b8369, https://usegalaxy.org/published/workflow?id=1f98df1adba71b98, https://usegalaxy.org/published/workflow?id=1ffc71df8eeed57e, https://usegalaxy.org/published/workflow?id=2078abc4c99c3344, https://usegalaxy.org/published/workflow?id=21b416bcf0b8c8cf, https://usegalaxy.org/published/workflow?id=226b506d1fc30e96, https://usegalaxy.org/published/workflow?id=23468eea382e6bb4, https://usegalaxy.org/published/workflow?id=25b8b5af30042d76, https://usegalaxy.org/published/workflow?id=27ee9da9121d0522, https://usegalaxy.org/published/workflow?id=28b2550248a54d74, https://usegalaxy.org/published/workflow?id=28e4871410288cb8, https://usegalaxy.org/published/workflow?id=291829fed6fa7c44, https://usegalaxy.org/published/workflow?id=2957924403998f3a, https://usegalaxy.org/published/workflow?id=2b5346b94358df88, https://usegalaxy.org/published/workflow?id=2b6245843e632c05, https://usegalaxy.org/published/workflow?id=2b820beaeb49dd64, https://usegalaxy.org/published/workflow?id=2cc5472ad7c039d1, https://usegalaxy.org/published/workflow?id=2d6d74294e911fa3, https://usegalaxy.org/published/workflow?id=2e029537d2f4ab50, https://usegalaxy.org/published/workflow?id=2f4d5f833aa1c981, https://usegalaxy.org/published/workflow?id=305eafecadfa8815, https://usegalaxy.org/published/workflow?id=30ba39be60ec29be, https://usegalaxy.org/published/workflow?id=313d50268e1e22e4, https://usegalaxy.org/published/workflow?id=31ed5a2bcc8da51a, https://usegalaxy.org/published/workflow?id=326ced2230a49c26, https://usegalaxy.org/published/workflow?id=32c769241ffce3d1, https://usegalaxy.org/published/workflow?id=336795e890851c21, https://usegalaxy.org/published/workflow?id=33e827d75a0074df, https://usegalaxy.org/published/workflow?id=357225c624e796b5, https://usegalaxy.org/published/workflow?id=35c022174ce79c1e, https://usegalaxy.org/published/workflow?id=3673a1ced343d0d0, https://usegalaxy.org/published/workflow?id=36c885b0bc829da3, https://usegalaxy.org/published/workflow?id=375f5142c207a768, https://usegalaxy.org/published/workflow?id=3823773ef4ecaaf4, https://usegalaxy.org/published/workflow?id=3aa1b79aa6cca06b, https://usegalaxy.org/published/workflow?id=3b2bee20f0cfd957, https://usegalaxy.org/published/workflow?id=3b5437544ca3b5dc, https://usegalaxy.org/published/workflow?id=3c076bc8551a23d2, https://usegalaxy.org/published/workflow?id=3c0af11dbeeee506, https://usegalaxy.org/published/workflow?id=3d0ba2f11f370e05, https://usegalaxy.org/published/workflow?id=3d7a9694bcee6db5, https://usegalaxy.org/published/workflow?id=3fc5bdbd6355477c, https://usegalaxy.org/published/workflow?id=3fdd7a7907233d58, https://usegalaxy.org/published/workflow?id=405dc14eb02ff234, https://usegalaxy.org/published/workflow?id=424acfc2ded46f9f, https://usegalaxy.org/published/workflow?id=438761debd08a9be, https://usegalaxy.org/published/workflow?id=442949862ba62462, https://usegalaxy.org/published/workflow?id=444c856f03b6d2a7, https://usegalaxy.org/published/workflow?id=448a0797f9150198, https://usegalaxy.org/published/workflow?id=45cb3e98b1319c7c, https://usegalaxy.org/published/workflow?id=4612ec88a57ab9e7, https://usegalaxy.org/published/workflow?id=462a1176b48eef4a, https://usegalaxy.org/published/workflow?id=46894456a9bec601, https://usegalaxy.org/published/workflow?id=46e718fb8eeb4d54, https://usegalaxy.org/published/workflow?id=472f73c3e81da1d9, https://usegalaxy.org/published/workflow?id=4790266996f12979, https://usegalaxy.org/published/workflow?id=47a2458ee9d57b24, https://usegalaxy.org/published/workflow?id=4a01263e3d4b4edb, https://usegalaxy.org/published/workflow?id=4a95226c24ccbf3c, https://usegalaxy.org/published/workflow?id=4b7daa3c73c8ef30, https://usegalaxy.org/published/workflow?id=4b92dfd20d48d479, https://usegalaxy.org/published/workflow?id=4ba61941f31f0215, https://usegalaxy.org/published/workflow?id=4ca8b023f9a33440, https://usegalaxy.org/published/workflow?id=4cc70b699ea8bc63, https://usegalaxy.org/published/workflow?id=4f6e8ff94ca4f164, https://usegalaxy.org/published/workflow?id=506acac8c6a58d5e, https://usegalaxy.org/published/workflow?id=5199f404ad7ecef8, https://usegalaxy.org/published/workflow?id=51d80a44d7d6fff7, https://usegalaxy.org/published/workflow?id=52592de9687fc6de, https://usegalaxy.org/published/workflow?id=527adadecbab2eb6, https://usegalaxy.org/published/workflow?id=52b7524a3941885c, https://usegalaxy.org/published/workflow?id=52bde903adbbaf60, https://usegalaxy.org/published/workflow?id=52e2b69787ca7a17, https://usegalaxy.org/published/workflow?id=533b1d5d08f9943e, https://usegalaxy.org/published/workflow?id=5361db01e3b6cc0c, https://usegalaxy.org/published/workflow?id=553125cd799e5982, https://usegalaxy.org/published/workflow?id=5532e6f775adb0d7, https://usegalaxy.org/published/workflow?id=56427a9b9c3848bf, https://usegalaxy.org/published/workflow?id=570172fbcf865e1d, https://usegalaxy.org/published/workflow?id=57fdd0bae83f2c97, https://usegalaxy.org/published/workflow?id=58eeb06f911e8410, https://usegalaxy.org/published/workflow?id=59007e2bc9c807ee, https://usegalaxy.org/published/workflow?id=59d34b4f0178120b, https://usegalaxy.org/published/workflow?id=5a16ff38eb80da82, https://usegalaxy.org/published/workflow?id=5a55d9bd9701b1ce, https://usegalaxy.org/published/workflow?id=5aa4b9131c31cb79, https://usegalaxy.org/published/workflow?id=5b540de61a70df64, https://usegalaxy.org/published/workflow?id=5b8497a32bf01c4f, https://usegalaxy.org/published/workflow?id=5bd6d7af64192b86, https://usegalaxy.org/published/workflow?id=5c85cd8c56b9f6ab, https://usegalaxy.org/published/workflow?id=5cb74afcca56a453, https://usegalaxy.org/published/workflow?id=5ccc7d708e13de60, https://usegalaxy.org/published/workflow?id=5d1208bd49f97aeb, https://usegalaxy.org/published/workflow?id=5dd0a672cceb15ec, https://usegalaxy.org/published/workflow?id=5e18bbbe9ff2d9f5, https://usegalaxy.org/published/workflow?id=607d1683d6e26cef, https://usegalaxy.org/published/workflow?id=60b9910b7bb69f47, https://usegalaxy.org/published/workflow?id=6229546fb8b0eba9, https://usegalaxy.org/published/workflow?id=626260e3c3ee5c08, https://usegalaxy.org/published/workflow?id=62c842e67fca5ab7, https://usegalaxy.org/published/workflow?id=62ecc8078a396e9e, https://usegalaxy.org/published/workflow?id=63b0ce2faec558d5, https://usegalaxy.org/published/workflow?id=63f61ad7cae40646, https://usegalaxy.org/published/workflow?id=642e71c64a975461, https://usegalaxy.org/published/workflow?id=64a329cf75834d6b, https://usegalaxy.org/published/workflow?id=64af2cd469fee16a, https://usegalaxy.org/published/workflow?id=66e6b41f6c6d52b7, https://usegalaxy.org/published/workflow?id=671ca26597d27579, https://usegalaxy.org/published/workflow?id=672125473ec700bc, https://usegalaxy.org/published/workflow?id=672ca09dce4b0dc3, https://usegalaxy.org/published/workflow?id=676fa9af68f6a763, https://usegalaxy.org/published/workflow?id=67992bf894a82587, https://usegalaxy.org/published/workflow?id=68495cc8ec3d46df, https://usegalaxy.org/published/workflow?id=68b995393b3142ec, https://usegalaxy.org/published/workflow?id=68be9cfc0c58cb44, https://usegalaxy.org/published/workflow?id=6960b8f6c98a9b9e, https://usegalaxy.org/published/workflow?id=69edab5d6ad91556, https://usegalaxy.org/published/workflow?id=6a174e7498434bd5, https://usegalaxy.org/published/workflow?id=6a2dace98986992a, https://usegalaxy.org/published/workflow?id=6c68072bf72e6c4a, https://usegalaxy.org/published/workflow?id=6c95a357a3c1f399, https://usegalaxy.org/published/workflow?id=6db96a9c7e4b8d14, https://usegalaxy.org/published/workflow?id=6dcb43f86b9cd7dc, https://usegalaxy.org/published/workflow?id=6dfe0c6e87c6cb7b, https://usegalaxy.org/published/workflow?id=6e47a35cc5f2bdce, https://usegalaxy.org/published/workflow?id=6ea1bd64873b6c18, https://usegalaxy.org/published/workflow?id=6ecfa8ce19ed86da, https://usegalaxy.org/published/workflow?id=6f2e4b4860413153, https://usegalaxy.org/published/workflow?id=6fa88ca75caba8e4, https://usegalaxy.org/published/workflow?id=7090bb14a7af15bd, https://usegalaxy.org/published/workflow?id=70f9c7cc75a1d3c0, https://usegalaxy.org/published/workflow?id=716dc497d7d2e1c3, https://usegalaxy.org/published/workflow?id=7185085cbe953cd9, https://usegalaxy.org/published/workflow?id=72d134a60c694b59, https://usegalaxy.org/published/workflow?id=74c98eafd363cc2b, https://usegalaxy.org/published/workflow?id=75324d68ed124ff5, https://usegalaxy.org/published/workflow?id=75e23bc4e1ac2f5b, https://usegalaxy.org/published/workflow?id=75fffbce810acaf3, https://usegalaxy.org/published/workflow?id=761675cb2c9ad2ef, https://usegalaxy.org/published/workflow?id=7643e66a9b4e9c11, https://usegalaxy.org/published/workflow?id=769ec5a187095b38, https://usegalaxy.org/published/workflow?id=76d5143860fac947, https://usegalaxy.org/published/workflow?id=76fb573f1372ae86, https://usegalaxy.org/published/workflow?id=7757cd56fa4d060c, https://usegalaxy.org/published/workflow?id=77d1505c0dd65e26, https://usegalaxy.org/published/workflow?id=78249d353038002b, https://usegalaxy.org/published/workflow?id=7832cfdeabe47696, https://usegalaxy.org/published/workflow?id=789647a199e563fd, https://usegalaxy.org/published/workflow?id=79527e2b83fd5c64, https://usegalaxy.org/published/workflow?id=7a23e64dfa6957ce, https://usegalaxy.org/published/workflow?id=7a4d834e794407d9, https://usegalaxy.org/published/workflow?id=7b9e17cb1d72d7e4, https://usegalaxy.org/published/workflow?id=7c4a2339b17a8930, https://usegalaxy.org/published/workflow?id=7cee34a6c06c21e4, https://usegalaxy.org/published/workflow?id=7d11026214dd8c93, https://usegalaxy.org/published/workflow?id=7df3246858cd83d1, https://usegalaxy.org/published/workflow?id=7e56bee496344ddc, https://usegalaxy.org/published/workflow?id=7fb4dae5daab0522, https://usegalaxy.org/published/workflow?id=803aec95399f7073, https://usegalaxy.org/published/workflow?id=8095deba606ebd5e, https://usegalaxy.org/published/workflow?id=8182055f5ef561f3, https://usegalaxy.org/published/workflow?id=824730064b5014e5, https://usegalaxy.org/published/workflow?id=842c09b49c456429, https://usegalaxy.org/published/workflow?id=85011076892808e0, https://usegalaxy.org/published/workflow?id=85bc37a59a6ea443, https://usegalaxy.org/published/workflow?id=85e2a1d6b1d4e3d7, https://usegalaxy.org/published/workflow?id=870f4988a5cc815e, https://usegalaxy.org/published/workflow?id=8756aabc654b1050, https://usegalaxy.org/published/workflow?id=875ff758068e1c2f, https://usegalaxy.org/published/workflow?id=87756e064ab1e28a, https://usegalaxy.org/published/workflow?id=87c1bdc00b975377, https://usegalaxy.org/published/workflow?id=87d7a69106ca663d, https://usegalaxy.org/published/workflow?id=87ebf1b5956a61b5, https://usegalaxy.org/published/workflow?id=885f0e66fa6b8790, https://usegalaxy.org/published/workflow?id=889b394b38b259eb, https://usegalaxy.org/published/workflow?id=88e10493f7e6b9d5, https://usegalaxy.org/published/workflow?id=8990ae43ae855bc7, https://usegalaxy.org/published/workflow?id=899f4f371b4c958c, https://usegalaxy.org/published/workflow?id=89f48993bb8f94bd, https://usegalaxy.org/published/workflow?id=8a15bda6ce7a63ec, https://usegalaxy.org/published/workflow?id=8a215695e7b57cf5, https://usegalaxy.org/published/workflow?id=8ae311282a0d27a1, https://usegalaxy.org/published/workflow?id=8bf608c6fd0dabd0, https://usegalaxy.org/published/workflow?id=8cbb9936e88d4f49, https://usegalaxy.org/published/workflow?id=8cf06b14037a8d5a, https://usegalaxy.org/published/workflow?id=8db9ccf14567d9ba, https://usegalaxy.org/published/workflow?id=8e2b2a40831dfb08, https://usegalaxy.org/published/workflow?id=8e32b0a5a141543e, https://usegalaxy.org/published/workflow?id=8e509c87d143022c, https://usegalaxy.org/published/workflow?id=8e918c12d2f0d1fc, https://usegalaxy.org/published/workflow?id=8f392d06d32bdf14, https://usegalaxy.org/published/workflow?id=907aaf55487ddf43, https://usegalaxy.org/published/workflow?id=90ed607bedd65524, https://usegalaxy.org/published/workflow?id=9124c2ec80b35680, https://usegalaxy.org/published/workflow?id=914ec4d8fc0022e4, https://usegalaxy.org/published/workflow?id=917e5a21d51a61ce, https://usegalaxy.org/published/workflow?id=91806144e90637e8, https://usegalaxy.org/published/workflow?id=918863756ce93725, https://usegalaxy.org/published/workflow?id=9192807702bc3de2, https://usegalaxy.org/published/workflow?id=91ed290805f590de, https://usegalaxy.org/published/workflow?id=9255c0c9017b139f, https://usegalaxy.org/published/workflow?id=92aab10842ff610d, https://usegalaxy.org/published/workflow?id=931dd3e6b1fae4f5, https://usegalaxy.org/published/workflow?id=9373050c3ce80d56, https://usegalaxy.org/published/workflow?id=93cb976bd4ae546e, https://usegalaxy.org/published/workflow?id=94ab68d27de2e60f, https://usegalaxy.org/published/workflow?id=958b64b05011d8c0, https://usegalaxy.org/published/workflow?id=962f784745c1b740, https://usegalaxy.org/published/workflow?id=96ae2544e22d34c5, https://usegalaxy.org/published/workflow?id=96cdba1fe599ada8, https://usegalaxy.org/published/workflow?id=9763787d7b102f39, https://usegalaxy.org/published/workflow?id=97c20a819394e381, https://usegalaxy.org/published/workflow?id=97dcd7285ebd5817, https://usegalaxy.org/published/workflow?id=98a4b90f7fc2bfce, https://usegalaxy.org/published/workflow?id=995cc428eace3bc4, https://usegalaxy.org/published/workflow?id=9990b6e2facf6dca, https://usegalaxy.org/published/workflow?id=99ee567c092fb34c, https://usegalaxy.org/published/workflow?id=9b384b774485b2f2, https://usegalaxy.org/published/workflow?id=9b5ae15bb9aaba48, https://usegalaxy.org/published/workflow?id=9c688a2fc8d1bf4e, https://usegalaxy.org/published/workflow?id=9da9ddae8d5dc92f, https://usegalaxy.org/published/workflow?id=9db607d8d1cdcc25, https://usegalaxy.org/published/workflow?id=9ded318097694dbc, https://usegalaxy.org/published/workflow?id=9e9a027e0c294a79, https://usegalaxy.org/published/workflow?id=9eb29b71d7effefc, https://usegalaxy.org/published/workflow?id=9ecfaa613a112d78, https://usegalaxy.org/published/workflow?id=9edc78f665579559, https://usegalaxy.org/published/workflow?id=9f1e8e82fb3e2033, https://usegalaxy.org/published/workflow?id=a0693c1cf1100a1a, https://usegalaxy.org/published/workflow?id=a124d41da896779c, https://usegalaxy.org/published/workflow?id=a164d857439a126f, https://usegalaxy.org/published/workflow?id=a17af8b7b2b39c1a, https://usegalaxy.org/published/workflow?id=a2046dd883227b49, https://usegalaxy.org/published/workflow?id=a2b4a868fa9795d1, https://usegalaxy.org/published/workflow?id=a3945ef04698a1c5, https://usegalaxy.org/published/workflow?id=a3ff7dbfadbd96e2, https://usegalaxy.org/published/workflow?id=a4a56efb37d845bf, https://usegalaxy.org/published/workflow?id=a5bdab0b219b3797, https://usegalaxy.org/published/workflow?id=a63d3ee4a2a4a20b, https://usegalaxy.org/published/workflow?id=a8a38b594183db2b, https://usegalaxy.org/published/workflow?id=a8e5adb65d064641, https://usegalaxy.org/published/workflow?id=a8f633b79b20c760, https://usegalaxy.org/published/workflow?id=a986e4991fc61c92, https://usegalaxy.org/published/workflow?id=a99a938953be5fd6, https://usegalaxy.org/published/workflow?id=aa9def6ec8f13b3a, https://usegalaxy.org/published/workflow?id=ab490af27c9ccc80, https://usegalaxy.org/published/workflow?id=ac87b6133de6a03f, https://usegalaxy.org/published/workflow?id=acae55e8f37fea59, https://usegalaxy.org/published/workflow?id=ace738014a7278b0, https://usegalaxy.org/published/workflow?id=adb86df9061dca2b, https://usegalaxy.org/published/workflow?id=adbed5c956a71543, https://usegalaxy.org/published/workflow?id=adca3f2ca63730fe, https://usegalaxy.org/published/workflow?id=ae1de4267e4da154, https://usegalaxy.org/published/workflow?id=ae5327f6f30b6138, https://usegalaxy.org/published/workflow?id=af5d714396856e9a, https://usegalaxy.org/published/workflow?id=af71519c81429287, https://usegalaxy.org/published/workflow?id=afd7633a34d68704, https://usegalaxy.org/published/workflow?id=affdc1bf42475cc9, https://usegalaxy.org/published/workflow?id=b0b6dfa166b0d873, https://usegalaxy.org/published/workflow?id=b19a9163c26f1270, https://usegalaxy.org/published/workflow?id=b1dc9cf054a63be5, https://usegalaxy.org/published/workflow?id=b232caf4a1e1b7ee, https://usegalaxy.org/published/workflow?id=b3c8d64eca750ecf, https://usegalaxy.org/published/workflow?id=b5e8f4a0ff226921, https://usegalaxy.org/published/workflow?id=b63d1e1024cc3295, https://usegalaxy.org/published/workflow?id=b78a75ae89ae4c79, https://usegalaxy.org/published/workflow?id=b7b69aaee5202144, https://usegalaxy.org/published/workflow?id=b7ec8d79dc563a93, https://usegalaxy.org/published/workflow?id=b86d24a103181742, https://usegalaxy.org/published/workflow?id=b893662378ed3da0, https://usegalaxy.org/published/workflow?id=b8ed069eea7879e7, https://usegalaxy.org/published/workflow?id=b93a475af82a3d36, https://usegalaxy.org/published/workflow?id=ba5889301928907f, https://usegalaxy.org/published/workflow?id=bae2d6b436cd80ef, https://usegalaxy.org/published/workflow?id=bb25ac3ba4863424, https://usegalaxy.org/published/workflow?id=bcb798fb718968ce, https://usegalaxy.org/published/workflow?id=bd3bed78eb99e294, https://usegalaxy.org/published/workflow?id=be46c5bb8c06a470, https://usegalaxy.org/published/workflow?id=bf3f71a748d88490, https://usegalaxy.org/published/workflow?id=c0746df296544a3a, https://usegalaxy.org/published/workflow?id=c07476a937b4e52e, https://usegalaxy.org/published/workflow?id=c0a108e53ab05b0d, https://usegalaxy.org/published/workflow?id=c1339c998a55431c, https://usegalaxy.org/published/workflow?id=c156e67ad1ae4a97, https://usegalaxy.org/published/workflow?id=c1ec12905944ca7b, https://usegalaxy.org/published/workflow?id=c20a68563e80d401, https://usegalaxy.org/published/workflow?id=c2898d28a3b380d6, https://usegalaxy.org/published/workflow?id=c30bfd545ef3a228, https://usegalaxy.org/published/workflow?id=c478d8de43a3f30f, https://usegalaxy.org/published/workflow?id=c4ac09605633655c, https://usegalaxy.org/published/workflow?id=c57f70d686b6062e, https://usegalaxy.org/published/workflow?id=c5f4b7b2463f338b, https://usegalaxy.org/published/workflow?id=c66e2738f37a8c16, https://usegalaxy.org/published/workflow?id=c69f8c26ec5fb8a6, https://usegalaxy.org/published/workflow?id=c707871e1dc9e21d, https://usegalaxy.org/published/workflow?id=c712b85a55da2a2d, https://usegalaxy.org/published/workflow?id=c75acc1ab44c121f, https://usegalaxy.org/published/workflow?id=c81833a367445f98, https://usegalaxy.org/published/workflow?id=c9474fcce2a21188, https://usegalaxy.org/published/workflow?id=c96b12be162f744b, https://usegalaxy.org/published/workflow?id=ca36eebd59575df3, https://usegalaxy.org/published/workflow?id=cb011900fc0ee12a, https://usegalaxy.org/published/workflow?id=cbbd7e95041d9429, https://usegalaxy.org/published/workflow?id=cd4d88429f096fbc, https://usegalaxy.org/published/workflow?id=cd5f803c80875b9c, https://usegalaxy.org/published/workflow?id=cd824d8631d6a55e, https://usegalaxy.org/published/workflow?id=ce815d36cbb57304, https://usegalaxy.org/published/workflow?id=cf3320614654adfe, https://usegalaxy.org/published/workflow?id=cfa7c3d7e69e91d7, https://usegalaxy.org/published/workflow?id=d00ac64dcd07f91a, https://usegalaxy.org/published/workflow?id=d02b4d7483936b73, https://usegalaxy.org/published/workflow?id=d2759906e4124964, https://usegalaxy.org/published/workflow?id=d2dec03b33af1b2f, https://usegalaxy.org/published/workflow?id=d341660f3d1ce8bf, https://usegalaxy.org/published/workflow?id=d4029ce1344e874a, https://usegalaxy.org/published/workflow?id=d6cf3be79a4b7db4, https://usegalaxy.org/published/workflow?id=d768a4a06d3b1a90, https://usegalaxy.org/published/workflow?id=d903c7215a88c79f, https://usegalaxy.org/published/workflow?id=d9840d6ecf2b4d2f, https://usegalaxy.org/published/workflow?id=dbc650d226e89013, https://usegalaxy.org/published/workflow?id=dc006ebf798f1f2f, https://usegalaxy.org/published/workflow?id=dcf658333596d76a, https://usegalaxy.org/published/workflow?id=ddf222b797082436, https://usegalaxy.org/published/workflow?id=de208a900880dcdc, https://usegalaxy.org/published/workflow?id=de24e5678f541584, https://usegalaxy.org/published/workflow?id=de29cd965a2e93d3, https://usegalaxy.org/published/workflow?id=deea71ccac30c7ea, https://usegalaxy.org/published/workflow?id=df24d76ebf13e3c1, https://usegalaxy.org/published/workflow?id=df8b49863e83824d, https://usegalaxy.org/published/workflow?id=dff3cf6921b3d4d6, https://usegalaxy.org/published/workflow?id=e0ec503626fa0d58, https://usegalaxy.org/published/workflow?id=e12296df7cf33c69, https://usegalaxy.org/published/workflow?id=e1aad86fdf9e6616, https://usegalaxy.org/published/workflow?id=e31abcc04c5c69bc, https://usegalaxy.org/published/workflow?id=e325b97b81b10edb, https://usegalaxy.org/published/workflow?id=e42a07b777c9f9dc, https://usegalaxy.org/published/workflow?id=e500078649dd026c, https://usegalaxy.org/published/workflow?id=e53b695ff681b675, https://usegalaxy.org/published/workflow?id=e58a87508a337b91, https://usegalaxy.org/published/workflow?id=e5f79f576548f7c5, https://usegalaxy.org/published/workflow?id=e7fa48d7fd40908b, https://usegalaxy.org/published/workflow?id=e817b5b275b4952f, https://usegalaxy.org/published/workflow?id=e899acc664c8b808, https://usegalaxy.org/published/workflow?id=e9927c058ec0661f, https://usegalaxy.org/published/workflow?id=e9aaa56af9d230d6, https://usegalaxy.org/published/workflow?id=e9f4de639f4cfe02, https://usegalaxy.org/published/workflow?id=e9ffad95baa43478, https://usegalaxy.org/published/workflow?id=ea248022a4217e0e, https://usegalaxy.org/published/workflow?id=ea4c2defce2f5258, https://usegalaxy.org/published/workflow?id=ea5d2401f6711dff, https://usegalaxy.org/published/workflow?id=ea61cd21e3fbad2b, https://usegalaxy.org/published/workflow?id=eab7347464872b4c, https://usegalaxy.org/published/workflow?id=eae5ae951abe6761, https://usegalaxy.org/published/workflow?id=eafe4aa62a600e1d, https://usegalaxy.org/published/workflow?id=ebe7f93204402a5a, https://usegalaxy.org/published/workflow?id=ec2f77224324f22e, https://usegalaxy.org/published/workflow?id=ec66767cab0022ee, https://usegalaxy.org/published/workflow?id=ecb279a9114140ab, https://usegalaxy.org/published/workflow?id=edf9be785ab9eb65, https://usegalaxy.org/published/workflow?id=ee27581327d147da, https://usegalaxy.org/published/workflow?id=ee3b8d7ba29da11c, https://usegalaxy.org/published/workflow?id=ef6036efe8a03a12, https://usegalaxy.org/published/workflow?id=efe7ca87323773c0, https://usegalaxy.org/published/workflow?id=f062eda543541ba8, https://usegalaxy.org/published/workflow?id=f0ee8bcd7c8fadca, https://usegalaxy.org/published/workflow?id=f18946db4c93e88b, https://usegalaxy.org/published/workflow?id=f1c2d920bd41cebb, https://usegalaxy.org/published/workflow?id=f29d1bcfeaacba04, https://usegalaxy.org/published/workflow?id=f3b417763495221b, https://usegalaxy.org/published/workflow?id=f5200b7bcceed5d6, https://usegalaxy.org/published/workflow?id=f58aa85ceaa19534, https://usegalaxy.org/published/workflow?id=f5bd2da36ab0a870, https://usegalaxy.org/published/workflow?id=f733ad0a6cc50cb9, https://usegalaxy.org/published/workflow?id=f765c8aa4bc3176c, https://usegalaxy.org/published/workflow?id=f794b4b9bb990c80, https://usegalaxy.org/published/workflow?id=f7975ae799daf463, https://usegalaxy.org/published/workflow?id=f7a3567ba6b57c9c, https://usegalaxy.org/published/workflow?id=f8d85cda81baa77d, https://usegalaxy.org/published/workflow?id=f8ed1ae9d501bb87, https://usegalaxy.org/published/workflow?id=f93b5864d6d2659c, https://usegalaxy.org/published/workflow?id=f9cd2289c007f103, https://usegalaxy.org/published/workflow?id=fa226c044fa026ef, https://usegalaxy.org/published/workflow?id=fb588edfd343b24d, https://usegalaxy.org/published/workflow?id=fc130cb411aa7d06, https://usegalaxy.org/published/workflow?id=fcae9dfcdca70798, https://usegalaxy.org/published/workflow?id=fcbd4767298488b9, https://usegalaxy.org/published/workflow?id=fcbe12fc4eaae12e, https://usegalaxy.org/published/workflow?id=fce1837144d3a86e, https://usegalaxy.org/published/workflow?id=fd75347cfea06651, https://usegalaxy.org/published/workflow?id=fda29ba2b6c98f8b, https://usegalaxy.org/published/workflow?id=fe2d15d352a9919f, https://usegalaxy.org/published/workflow?id=fe4c2791508c56ab, https://usegalaxy.org/published/workflow?id=fff1a5c7475b3eeb, https://workflowhub.eu/workflows/1506?version=1, https://workflowhub.eu/workflows/1562?version=1, https://workflowhub.eu/workflows/1568?version=1, https://workflowhub.eu/workflows/1606?version=1, https://workflowhub.eu/workflows/1615?version=1, https://workflowhub.eu/workflows/1620?version=1, https://workflowhub.eu/workflows/394?version=1, https://workflowhub.eu/workflows/395?version=15, https://workflowhub.eu/workflows/397?version=14, https://workflowhub.eu/workflows/398?version=15, https://workflowhub.eu/workflows/399?version=19, https://workflowhub.eu/workflows/561?version=11 |
epigenetics/atac-seq, epigenetics/cut_and_run, epigenetics/estrogen-receptor-binding-site-identification, epigenetics/formation_of_super-structures_on_xi, epigenetics/tal1-binding-site-identification, single-cell/scatac-preprocessing-tenx |
|
maf_stats |
maf_stats1 |
MAF Coverage statistics |
2020-08-12 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ |
1.0.2+galaxy0 |
|
|
To update |
Genomic Interval Operations |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/maf_stats |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
1 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
1 |
1 |
1 |
0 |
1 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
0 |
7 |
9 |
15 |
21 |
53 |
467 |
194 |
2479 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
2501 |
210 |
477 |
61 |
|
|
|
maf_tools |
ucsc_mafaddirows, ucsc_mafcoverage, ucsc_maffetch, ucsc_mafFilter, ucsc_maffrag, ucsc_maffrags |
Utilities for working with MAF (Multiple Alignment Format) files from UCSC |
2025-06-03 |
http://genome.ucsc.edu |
482 |
ucsc-mafaddirows |
482 |
Up-to-date |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
mageck |
mageck_count, mageck_gsea, mageck_mle, mageck_pathway, mageck_test |
Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identifyimportant genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. |
2017-11-08 |
https://sourceforge.net/projects/mageck/ |
0.5.9.2 |
mageck |
0.5.9.5 |
To update |
Genome editing |
Genetic variation analysis |
Genetic variation analysis |
Genetics, Genetic variation, Genomics |
Genetics, Genetic variation, Genomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/mageck |
mageck |
MAGeCK |
Computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. |
|
3 |
5 |
5 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
5 |
5 |
0 |
391 |
397 |
12805 |
13389 |
340 |
340 |
8908 |
8908 |
122 |
123 |
6252 |
6356 |
2 |
2 |
8 |
8 |
28661 |
27973 |
862 |
855 |
https://dev.workflowhub.eu/workflows/1179?version=2, https://workflowhub.eu/workflows/1534?version=1 |
genome-annotation/crispr-screen |
|
magicblast |
magicblast |
Maps large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome |
2022-04-05 |
https://ncbi.github.io/magicblast/ |
1.7.0 |
magicblast |
1.7.0 |
Up-to-date |
Next Gen Mappers |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/blast |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/blast |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
188 |
188 |
6949 |
6949 |
0 |
0 |
0 |
0 |
1 |
1 |
2 |
2 |
0 |
0 |
0 |
0 |
6951 |
6951 |
189 |
189 |
|
|
|
maker |
maker, maker_map_ids |
MAKER is a portable and easily configurable genome annotation pipeline.Its purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create genome databases. |
2017-10-04 |
http://www.yandell-lab.org/software/maker.html |
2.31.11 |
maker |
3.01.04 |
To update |
Sequence Analysis |
Genome annotation |
Genome annotation |
Genomics, DNA, Sequence analysis |
Genomics, DNA, Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/maker |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/maker |
maker |
MAKER |
Portable and easily configurable genome annotation pipeline. It’s purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create genome databases. |
|
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
1121 |
1203 |
6686 |
7557 |
1653 |
1653 |
9650 |
9650 |
774 |
774 |
4410 |
4410 |
27 |
27 |
129 |
129 |
21746 |
20875 |
3657 |
3575 |
https://dev.workflowhub.eu/workflows/1164?version=2, https://dev.workflowhub.eu/workflows/1194?version=2, https://usegalaxy.eu/published/workflow?id=26ad77bc07a7e512, https://usegalaxy.eu/published/workflow?id=6ca20e710f4f3ffb, https://usegalaxy.org.au/published/workflow?id=7e40485d1ed45b7c, https://usegalaxy.org/published/workflow?id=65b4051e722228b8, https://usegalaxy.org/published/workflow?id=dbe08700353dfc43, https://workflowhub.eu/workflows/1323?version=1, https://workflowhub.eu/workflows/1504?version=1, https://workflowhub.eu/workflows/1549?version=1 |
genome-annotation/annotation-with-maker, genome-annotation/annotation-with-maker-short |
|
malt_run |
malt_run |
Aligns an input sequence (DNA or proteins) against an index representing a collection of reference DNA or protein sequences. |
2021-11-12 |
https://github.com/husonlab/malt |
0.5.3 |
malt |
0.62 |
To update |
Next Gen Mappers |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/malt |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
9 |
9 |
25 |
25 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
25 |
25 |
9 |
9 |
|
|
|
map_damage |
map_damage |
Tracks and quantifies specific ancient DNA damage patterns for authentication. |
2025-06-27 |
https://ginolhac.github.io/mapDamage/ |
2.2.3 |
mapdamage2 |
2.2.3 |
Up-to-date |
Sequence Analysis, Statistics, Visualization |
Sequencing quality control, Statistical calculation |
Sequencing quality control, Statistical calculation |
DNA, Sequencing |
DNA, Sequencing |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/map_damage |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/map_damage |
mapdamage |
MapDamage |
Identify and quantify DNA damage patterns in ancient DNA. |
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
map_param_value |
map_param_value |
Map a parameter value to another value |
2022-10-13 |
|
0.2.0 |
|
|
To update |
Text Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/map_param_value |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
112 |
112 |
4503 |
4503 |
114 |
114 |
2410 |
2410 |
4 |
4 |
129 |
129 |
0 |
0 |
0 |
0 |
7042 |
7042 |
230 |
230 |
https://usegalaxy.eu/published/workflow?id=0603f0898211f806, https://usegalaxy.eu/published/workflow?id=0eb137cd936bbfe0, https://usegalaxy.eu/published/workflow?id=18af9bbae833f8fe, https://usegalaxy.eu/published/workflow?id=249c5d6698c8b98c, https://usegalaxy.eu/published/workflow?id=2d08a73dd8ff99e9, https://usegalaxy.eu/published/workflow?id=373d861ef4b0081a, https://usegalaxy.eu/published/workflow?id=3f6c7249ef71ae41, https://usegalaxy.eu/published/workflow?id=406e6ef0dfb38628, https://usegalaxy.eu/published/workflow?id=409336bf210033a2, https://usegalaxy.eu/published/workflow?id=6239178d7cc4ac68, https://usegalaxy.eu/published/workflow?id=6aaf2b342d57f78d, https://usegalaxy.eu/published/workflow?id=6ebd09100fc98878, https://usegalaxy.eu/published/workflow?id=7bda7ae31c427347, https://usegalaxy.eu/published/workflow?id=7cbda24fd0767899, https://usegalaxy.eu/published/workflow?id=7ecd92cb382d8168, https://usegalaxy.eu/published/workflow?id=82879b0eb4a71ad0, https://usegalaxy.eu/published/workflow?id=841367f185aaade4, https://usegalaxy.eu/published/workflow?id=86e2e2faa2e0bd46, https://usegalaxy.eu/published/workflow?id=873e6ac4699ed7f6, https://usegalaxy.eu/published/workflow?id=87fea062a9646a31, https://usegalaxy.eu/published/workflow?id=8c6371b360217f72, https://usegalaxy.eu/published/workflow?id=96c61a584cb2e5e9, https://usegalaxy.eu/published/workflow?id=9da26c5131603b9f, https://usegalaxy.eu/published/workflow?id=a15dabcadb63b46d, https://usegalaxy.eu/published/workflow?id=a3da32b6b45da639, https://usegalaxy.eu/published/workflow?id=a6d36048d545bca7, https://usegalaxy.eu/published/workflow?id=aff44f1665a14e23, https://usegalaxy.eu/published/workflow?id=b426e137396acb14, https://usegalaxy.eu/published/workflow?id=b6457cb04bf31613, https://usegalaxy.eu/published/workflow?id=bace9aebab9d4ce3, https://usegalaxy.eu/published/workflow?id=c4fa05e209a2f082, https://usegalaxy.eu/published/workflow?id=c98a14fcf5998159, https://usegalaxy.eu/published/workflow?id=d3494c6124f820b2, https://usegalaxy.eu/published/workflow?id=d3edc3f0659a5e5b, https://usegalaxy.eu/published/workflow?id=d649ec485c4b3994, https://usegalaxy.eu/published/workflow?id=d6809603f46de1b3, https://usegalaxy.eu/published/workflow?id=deec04097a871646, https://usegalaxy.eu/published/workflow?id=e472096116cbe392, https://usegalaxy.eu/published/workflow?id=e8a8c0b59ba9d593, https://usegalaxy.eu/published/workflow?id=ea3b120f105434ec, https://usegalaxy.eu/published/workflow?id=ead0f264798f9418, https://usegalaxy.eu/published/workflow?id=ef1d11b79a2e1727, https://usegalaxy.eu/published/workflow?id=efe6d8a65226505e, https://usegalaxy.eu/published/workflow?id=f63127675a07e00a, https://usegalaxy.eu/published/workflow?id=fa53b172def3fe75, https://usegalaxy.org.au/published/workflow?id=102eb726f63f3190, https://usegalaxy.org.au/published/workflow?id=462beb964c99619d, https://usegalaxy.org.au/published/workflow?id=466809eb3392f7fb, https://usegalaxy.org.au/published/workflow?id=56bda8e4b0018e03, https://usegalaxy.org.au/published/workflow?id=5cd9b9338e75f254, https://usegalaxy.org.au/published/workflow?id=749d8f2d26e0a111, https://usegalaxy.org.au/published/workflow?id=7c22d726e1716f4b, https://usegalaxy.org.au/published/workflow?id=8d6d4f848067f3d9, https://usegalaxy.org.au/published/workflow?id=9b18123afbe1264b, https://usegalaxy.org.au/published/workflow?id=b03b577156e4db5b, https://usegalaxy.org.au/published/workflow?id=b517cabb697491a0, https://usegalaxy.org.au/published/workflow?id=b7226d37b25df833, https://usegalaxy.org.au/published/workflow?id=bc4e3115586cbe62, https://usegalaxy.org.au/published/workflow?id=c2dee690320f9845, https://usegalaxy.org.au/published/workflow?id=c622bd03677314aa, https://usegalaxy.org.au/published/workflow?id=c8d18e2c03dca796, https://usegalaxy.org.au/published/workflow?id=ccc6602623583bcc, https://usegalaxy.org.au/published/workflow?id=ccfae75390038ced, https://usegalaxy.org.au/published/workflow?id=d094d2aa9c6e9c24, https://usegalaxy.org.au/published/workflow?id=f53d8ade897b3f46, https://usegalaxy.org/published/workflow?id=1234a128adc25b03, https://usegalaxy.org/published/workflow?id=1f28e673ea725541, https://usegalaxy.org/published/workflow?id=2125db88b4a71c09, https://usegalaxy.org/published/workflow?id=2a4823c060dd216e, https://usegalaxy.org/published/workflow?id=2f774500d5bec9a6, https://usegalaxy.org/published/workflow?id=31186e478383465b, https://usegalaxy.org/published/workflow?id=3511da8b41b1fb5d, https://usegalaxy.org/published/workflow?id=38f06c4c6dd4eb62, https://usegalaxy.org/published/workflow?id=3ab66315f50501f0, https://usegalaxy.org/published/workflow?id=3ad9cdcda44b7dfb, https://usegalaxy.org/published/workflow?id=3e57e668cf698d19, https://usegalaxy.org/published/workflow?id=3e6c9ab5ef3250ae, https://usegalaxy.org/published/workflow?id=412da1489d6aed45, https://usegalaxy.org/published/workflow?id=42bc3a770f0ab6b8, https://usegalaxy.org/published/workflow?id=46207bf9ce5ee26a, https://usegalaxy.org/published/workflow?id=4680511d4daad5d7, https://usegalaxy.org/published/workflow?id=49a07807fcea8158, https://usegalaxy.org/published/workflow?id=4c996921fb6a2334, https://usegalaxy.org/published/workflow?id=5336b9d26a083983, https://usegalaxy.org/published/workflow?id=53fdff74729a6780, https://usegalaxy.org/published/workflow?id=5a5d0dc4cd2f1ebd, https://usegalaxy.org/published/workflow?id=63b3b266bde77563, https://usegalaxy.org/published/workflow?id=676b88d0aac13fa5, https://usegalaxy.org/published/workflow?id=696b2efc589afd6f, https://usegalaxy.org/published/workflow?id=7454015793c4adc9, https://usegalaxy.org/published/workflow?id=778a8867b0a6ea4f, https://usegalaxy.org/published/workflow?id=7a26069c2939bef9, https://usegalaxy.org/published/workflow?id=868acaf49d0743ec, https://usegalaxy.org/published/workflow?id=87eb1a8ee7a2c984, https://usegalaxy.org/published/workflow?id=89f52c97b3aee938, https://usegalaxy.org/published/workflow?id=8b4945a0fb49e03e, https://usegalaxy.org/published/workflow?id=8bcab83874cbc75c, https://usegalaxy.org/published/workflow?id=91a4daecbb97d03e, https://usegalaxy.org/published/workflow?id=93e69c7e7a857ca3, https://usegalaxy.org/published/workflow?id=97263f3308077ff0, https://usegalaxy.org/published/workflow?id=a97c694b3298ae44, https://usegalaxy.org/published/workflow?id=ac3755c1ae5f7f16, https://usegalaxy.org/published/workflow?id=af85a2ae187409f4, https://usegalaxy.org/published/workflow?id=b7c67632a6eabda5, https://usegalaxy.org/published/workflow?id=bd2ce9a97c1598df, https://usegalaxy.org/published/workflow?id=c74e3a24751d9924, https://usegalaxy.org/published/workflow?id=c7693951c6215e19, https://usegalaxy.org/published/workflow?id=d1ca40dd7e591025, https://usegalaxy.org/published/workflow?id=d485bf21a5069fe4, https://usegalaxy.org/published/workflow?id=e55ca98817c1855e, https://usegalaxy.org/published/workflow?id=f35ccb693cd874c1, https://usegalaxy.org/published/workflow?id=f3c8093c5b8a7233, https://workflowhub.eu/workflows/1051?version=2, https://workflowhub.eu/workflows/1256?version=1, https://workflowhub.eu/workflows/1260?version=2, https://workflowhub.eu/workflows/1296?version=2, https://workflowhub.eu/workflows/1324?version=1, https://workflowhub.eu/workflows/1327?version=6, https://workflowhub.eu/workflows/1352?version=3, https://workflowhub.eu/workflows/400?version=12, https://workflowhub.eu/workflows/401?version=13, https://workflowhub.eu/workflows/622?version=11, https://workflowhub.eu/workflows/625?version=23 |
|
|
maplot |
maplot |
Generate MA plots for visualizing data distributions using Plotly or Matplotlib. |
2025-04-17 |
https://github.com/galaxyproject/tools-iuc |
1.0.0 |
plotly |
|
To update |
Visualization, Statistics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/maplot |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
mapseq |
mapseq |
fast and accurate sequence read classification tool designed to assign taxonomy and OTU classifications to ribosomal RNA sequences. |
2023-08-02 |
https://github.com/jfmrod/MAPseq |
2.1.1b |
perl |
|
To update |
Metagenomics |
k-mer counting |
k-mer counting |
Functional, regulatory and non-coding RNA, Sequence analysis, Sequence sites, features and motifs |
Functional, regulatory and non-coding RNA, Sequence analysis, Sequence sites, features and motifs |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/mapseq |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/mapseq |
mapseq |
MAPseq |
Highly efficient k-mer search with confidence estimates, for rRNA sequence analysis . |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
48 |
48 |
9212 |
9212 |
4 |
4 |
17 |
17 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
9229 |
9229 |
52 |
52 |
https://usegalaxy.eu/published/workflow?id=08e25b733cd796e6, https://usegalaxy.eu/published/workflow?id=437704898229dfb6, https://usegalaxy.eu/published/workflow?id=fb806b88850f3427, https://usegalaxy.org/published/workflow?id=45f959d5bf505b15, https://usegalaxy.org/published/workflow?id=8151be18aab3a3c6, https://workflowhub.eu/workflows/1270?version=2, https://workflowhub.eu/workflows/1273?version=2 |
|
|
mash |
mash_screen, mash_sketch |
Fast genome and metagenome distance estimation using MinHash |
2018-12-07 |
https://github.com/marbl/Mash |
2.3 |
mash |
2.3 |
Up-to-date |
Metagenomics |
Sequence distance matrix generation |
Sequence distance matrix generation |
Genomics, Metagenomics, Statistics and probability, Sequence analysis, DNA mutation |
Metagenomics, Statistics and probability, Sequence analysis, DNA mutation |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/mash |
mash |
Mash |
Fast genome and metagenome distance estimation using MinHash. |
|
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
40 |
40 |
10171 |
10171 |
8 |
8 |
333 |
333 |
8 |
8 |
1980 |
1980 |
1 |
1 |
21 |
21 |
12505 |
12505 |
57 |
57 |
|
|
|
mashmap |
mashmap |
Fast local alignment boundaries |
2024-02-26 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/mashmap |
3.1.3 |
mashmap |
3.1.3 |
Up-to-date |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/mashmap |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/mashmap |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
21 |
21 |
1301 |
1301 |
17 |
17 |
990 |
990 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2291 |
2291 |
38 |
38 |
https://usegalaxy.eu/published/workflow?id=1ce406de61de8492, https://usegalaxy.eu/published/workflow?id=2e93613c688ea52e, https://usegalaxy.eu/published/workflow?id=309969a261189b5f, https://usegalaxy.eu/published/workflow?id=3cf3dd9727b7ac92, https://usegalaxy.eu/published/workflow?id=5aaa64ecdf9f7d6e, https://usegalaxy.eu/published/workflow?id=5f29105e842716db, https://usegalaxy.eu/published/workflow?id=cc2bc81352d2e2cd, https://usegalaxy.eu/published/workflow?id=f9a73b39b2051af1 |
|
|
masigpro |
masigpro |
Identify significantly differential expression profiles in time-course microarray experiments |
2017-05-09 |
https://www.bioconductor.org/packages/release/bioc/html/maSigPro.html |
1.49.3 |
coreutils |
8.25 |
To update |
Transcriptomics, RNA, Statistics |
Regression analysis |
Regression analysis |
Gene expression, Molecular genetics, Microarray experiment, RNA-Seq |
Gene expression, Microarray experiment, RNA-Seq |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/masigpro |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/masigpro |
masigpro |
maSigPro |
Regression based approach to find genes for which there are significant gene expression profile differences between experimental groups in time course microarray and RNA-Seq experiments. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
35 |
42 |
376 |
584 |
83 |
83 |
602 |
602 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1186 |
978 |
125 |
118 |
|
|
|
maxbin2 |
maxbin2 |
clusters metagenomic contigs into bins |
2019-10-24 |
https://downloads.jbei.org/data/microbial_communities/MaxBin/MaxBin.html |
|
maxbin2 |
2.2.7 |
To update |
Metagenomics |
Sequence assembly |
Sequence assembly |
Metagenomics, Sequence assembly, Microbiology |
Metagenomics, Sequence assembly, Microbiology |
mbernt |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/maxbin2/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/maxbin2 |
maxbin |
MaxBin |
Software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
0 |
360 |
366 |
3368 |
3444 |
568 |
572 |
2616 |
2625 |
91 |
91 |
1002 |
1002 |
4 |
4 |
620 |
620 |
7691 |
7606 |
1033 |
1023 |
https://usegalaxy.eu/published/workflow?id=02631612a43a4d9b, https://usegalaxy.eu/published/workflow?id=0563f58718be932d, https://usegalaxy.eu/published/workflow?id=1e5f1d9a51032e44, https://usegalaxy.eu/published/workflow?id=3f6c7249ef71ae41, https://usegalaxy.eu/published/workflow?id=6158c3b5fc12044e, https://usegalaxy.eu/published/workflow?id=667bac8d7453e5f1, https://usegalaxy.eu/published/workflow?id=7ecd92cb382d8168, https://usegalaxy.eu/published/workflow?id=83c5bf0208f4d217, https://usegalaxy.eu/published/workflow?id=8deb08d4f228e198, https://usegalaxy.eu/published/workflow?id=97312d273b6e8bd9, https://usegalaxy.eu/published/workflow?id=aa5b077da1d36b23, https://usegalaxy.eu/published/workflow?id=b0377f05f97b18b1, https://usegalaxy.eu/published/workflow?id=ce5c9287a67e6085, https://usegalaxy.eu/published/workflow?id=d57d41e306241396, https://usegalaxy.org/published/workflow?id=33d90e718ce500ef, https://workflowhub.eu/workflows/1352?version=3 |
|
|
mcl |
mcl |
The Markov Cluster Algorithm, a cluster algorithm for graphs |
2022-05-12 |
https://micans.org/mcl/man/mcl.html |
22.282 |
mcl |
22.282 |
Up-to-date |
Sequence Analysis |
Clustering, Network analysis, Gene regulatory network analysis |
Clustering, Gene regulatory network analysis |
Molecular interactions, pathways and networks |
Molecular interactions, pathways and networks |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/mcl |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/mcl |
mcl |
MCL |
MCL is a clustering algorithm widely used in bioinformatics and gaining traction in other fields. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
18 |
18 |
153 |
153 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
153 |
153 |
18 |
18 |
|
|
|
medaka |
medaka_consensus, medaka_consensus_pipeline, medaka_snp, medaka_variant |
Sequence correction provided by ONT Research |
2020-02-23 |
https://github.com/nanoporetech/medaka |
1.7.2 |
medaka |
2.1.1 |
To update |
Sequence Analysis |
Base-calling, Variant calling, Sequence assembly |
Base-calling, Variant calling, Sequence assembly |
Sequence assembly, Machine learning |
Sequence assembly, Machine learning |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/medaka |
medaka |
Medaka |
medaka is a tool to create consensus sequences and variant calls from nanopore sequencing data. This task is performed using neural networks applied a pileup of individual sequencing reads against a draft assembly. |
|
3 |
3 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
3 |
3 |
3 |
0 |
1388 |
1388 |
126369 |
126369 |
595 |
595 |
59930 |
59930 |
366 |
366 |
10431 |
10431 |
16 |
16 |
2510 |
2510 |
199240 |
199240 |
2365 |
2365 |
https://dev.workflowhub.eu/workflows/1091?version=1, https://dev.workflowhub.eu/workflows/1174?version=2, https://dev.workflowhub.eu/workflows/144?version=1, https://dev.workflowhub.eu/workflows/195?version=2, https://usegalaxy.eu/published/workflow?id=0f6a7bd5362e4a2b, https://usegalaxy.eu/published/workflow?id=152223c8aed27357, https://usegalaxy.eu/published/workflow?id=2b888e200dfd91bc, https://usegalaxy.eu/published/workflow?id=2d9d4445a1871230, https://usegalaxy.eu/published/workflow?id=30dc526dcfa500df, https://usegalaxy.eu/published/workflow?id=34a07bf6407510ef, https://usegalaxy.eu/published/workflow?id=429ae28a178cd07c, https://usegalaxy.eu/published/workflow?id=476db04368d5e90c, https://usegalaxy.eu/published/workflow?id=4d97068a725c975c, https://usegalaxy.eu/published/workflow?id=529f30e894beacc2, https://usegalaxy.eu/published/workflow?id=585c21b7b1d864fc, https://usegalaxy.eu/published/workflow?id=70d3ebf31940bfb3, https://usegalaxy.eu/published/workflow?id=77e5bbd317750915, https://usegalaxy.eu/published/workflow?id=7bdd9ad918edab0b, https://usegalaxy.eu/published/workflow?id=86cf02cc0868d238, https://usegalaxy.eu/published/workflow?id=b97532c398b821a2, https://usegalaxy.eu/published/workflow?id=bf48b0eb15e8ff75, https://usegalaxy.eu/published/workflow?id=cf8591391a17a914, https://usegalaxy.eu/published/workflow?id=eb5ab8bc82569eee, https://usegalaxy.fr/published/workflow?id=61235264d5d2f666, https://usegalaxy.fr/published/workflow?id=727cfdb7c79287d1, https://usegalaxy.fr/published/workflow?id=e3c04a30258421aa, https://usegalaxy.org.au/published/workflow?id=084bb76cf47d7060, https://usegalaxy.org.au/published/workflow?id=0c6f7bfc826433c4, https://usegalaxy.org.au/published/workflow?id=47ce6a2d30887637, https://usegalaxy.org.au/published/workflow?id=48a60965b6b3ff54, https://usegalaxy.org.au/published/workflow?id=4bc8ac41ecff7daf, https://usegalaxy.org.au/published/workflow?id=59618ed15510f531, https://usegalaxy.org.au/published/workflow?id=705658f68ae73930, https://usegalaxy.org.au/published/workflow?id=888f8377eb6eabf2, https://usegalaxy.org.au/published/workflow?id=932bad88f8dc8d33, https://usegalaxy.org.au/published/workflow?id=ba7a9d4c857d26b7, https://usegalaxy.org.au/published/workflow?id=c997a34b55425155, https://usegalaxy.org.au/published/workflow?id=ef8c22c2525063a2, https://usegalaxy.org/published/workflow?id=2ded909e7e3a9962, https://usegalaxy.org/published/workflow?id=3f252e077e0bcce5, https://usegalaxy.org/published/workflow?id=4357180d40560019, https://usegalaxy.org/published/workflow?id=48dafc35989f13b1, https://usegalaxy.org/published/workflow?id=547f86db467bf620, https://usegalaxy.org/published/workflow?id=88d0b64011c3148c, https://usegalaxy.org/published/workflow?id=953d9cbe05e632a8, https://usegalaxy.org/published/workflow?id=9adf8691809326e5, https://usegalaxy.org/published/workflow?id=c12e6b7896f8e114, https://usegalaxy.org/published/workflow?id=c7b2d2ccc4b0dec5, https://usegalaxy.org/published/workflow?id=cce88bc57b180d09, https://usegalaxy.org/published/workflow?id=d3428dd172a78102, https://usegalaxy.org/published/workflow?id=e12324f5e3b930fd, https://workflowhub.eu/workflows/1062?version=1, https://workflowhub.eu/workflows/111?version=5, https://workflowhub.eu/workflows/1495?version=1, https://workflowhub.eu/workflows/1578?version=1, https://workflowhub.eu/workflows/226?version=1 |
assembly/largegenome, microbiome/pathogen-detection-from-nanopore-foodborne-data |
|
megahit |
megahit |
An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph. |
2017-09-22 |
https://github.com/voutcn/megahit |
1.2.9 |
megahit |
1.2.9 |
Up-to-date |
Sequence Analysis, Assembly, Metagenomics |
Genome assembly |
Genome assembly |
Metagenomics, Sequencing, Ecology, Sequence assembly |
Metagenomics, Sequencing, Sequence assembly |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/megahit |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/megahit |
megahit |
MEGAHIT |
Single node assembler for large and complex metagenomics NGS reads, such as soil. It makes use of succinct de Bruijn graph to achieve low memory usage, whereas its goal is not to make memory usage as low as possible. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
0 |
1635 |
1720 |
14667 |
16136 |
2453 |
2464 |
19200 |
19231 |
506 |
506 |
7542 |
7542 |
31 |
31 |
1147 |
1147 |
44056 |
42556 |
4721 |
4625 |
https://dev.workflowhub.eu/workflows/1099?version=1, https://dev.workflowhub.eu/workflows/1103?version=1, https://dev.workflowhub.eu/workflows/1116?version=1, https://dev.workflowhub.eu/workflows/1120?version=1, https://usegalaxy.eu/published/workflow?id=0563f58718be932d, https://usegalaxy.eu/published/workflow?id=1524b189069b42a5, https://usegalaxy.eu/published/workflow?id=1e5f1d9a51032e44, https://usegalaxy.eu/published/workflow?id=3f6c7249ef71ae41, https://usegalaxy.eu/published/workflow?id=401746888e8b3aa8, https://usegalaxy.eu/published/workflow?id=534f5fc25bc887ca, https://usegalaxy.eu/published/workflow?id=62c47e3c9d4f3aa3, https://usegalaxy.eu/published/workflow?id=7d84b0419296857d, https://usegalaxy.eu/published/workflow?id=7ecd92cb382d8168, https://usegalaxy.eu/published/workflow?id=97312d273b6e8bd9, https://usegalaxy.eu/published/workflow?id=98bfad0c684011e9, https://usegalaxy.eu/published/workflow?id=9b9e1e28f3683f92, https://usegalaxy.eu/published/workflow?id=a8417c63e9e22afb, https://usegalaxy.eu/published/workflow?id=b37800d990cceb83, https://usegalaxy.eu/published/workflow?id=bebcbd6f0ffa55c5, https://usegalaxy.eu/published/workflow?id=ce5c16ac23c4fbb1, https://usegalaxy.eu/published/workflow?id=d4a95588e6e50893, https://usegalaxy.eu/published/workflow?id=f141db5179ea8422, https://usegalaxy.org/published/workflow?id=7251c6e0dad8f927, https://workflowhub.eu/workflows/1352?version=3, https://workflowhub.eu/workflows/1390?version=2, https://workflowhub.eu/workflows/1480?version=1, https://workflowhub.eu/workflows/1631?version=1, https://workflowhub.eu/workflows/1634?version=1 |
assembly/metagenomics-assembly, microbiome/metagenomics-assembly, microbiome/metagenomics-binning |
|
megahit_contig2fastg |
megahit_contig2fastg |
A subprogram within the Megahit toolkit for converting contigs to assembly graphs (fastg) |
2018-11-09 |
https://github.com/voutcn/megahit/blob/master/tools/toolkit.cpp |
1.1.3 |
megahit |
1.2.9 |
To update |
Sequence Analysis, Assembly, Metagenomics |
Genome assembly |
Genome assembly |
Metagenomics, Sequencing, Ecology, Sequence assembly |
Metagenomics, Sequencing, Sequence assembly |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/megahit_contig2fastg |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/megahit_contig2fastg |
megahit |
MEGAHIT |
Single node assembler for large and complex metagenomics NGS reads, such as soil. It makes use of succinct de Bruijn graph to achieve low memory usage, whereas its goal is not to make memory usage as low as possible. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
171 |
175 |
566 |
619 |
67 |
67 |
188 |
188 |
17 |
17 |
76 |
76 |
3 |
3 |
44 |
44 |
927 |
874 |
262 |
258 |
https://dev.workflowhub.eu/workflows/1103?version=1, https://dev.workflowhub.eu/workflows/1120?version=1, https://usegalaxy.eu/published/workflow?id=62c47e3c9d4f3aa3, https://workflowhub.eu/workflows/1390?version=2, https://workflowhub.eu/workflows/1634?version=1 |
assembly/metagenomics-assembly, microbiome/metagenomics-assembly |
|
megan |
megan_blast2lca, megan_blast2rma, megan_daa2info, megan_daa2rma, megan_daa_meganizer, megan_read_extractor, megan_sam2rma |
MEGAN Community Edition - Interactive exploration and analysis of large-scale microbiome sequencing data. MEGAN is a tool for studying the taxonomic content of a set of DNA reads, typically collected in a metagenomics project.In a preprocessing step, a sequence alignment of all reads against a suitable database of reference DNA or proteinsequences must be performed to produce an input file for the program. MEGAN is suitable for DNA reads (metagenomedata), RNA reads (metatranscriptome data), peptide sequences (metaproteomics data) and, using a suitable synonymsfile that maps SILVA ids to taxon ids, for 16S rRNA data (amplicon sequencing). |
2021-11-24 |
https://github.com/husonlab/megan-ce |
6.21.7 |
megan |
6.25.10 |
To update |
Sequence Analysis |
Sequence analysis, Taxonomic classification |
Sequence analysis, Taxonomic classification |
Sequence analysis |
Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/megan |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/megan |
megan |
MEGAN |
Metagenome Analysis Software - MEGAN (MEtaGenome ANalyzerÂť) is a new computer program that allows laptop analysis of large metagenomic datasets. In a preprocessing step, the set of DNA reads (or contigs) is compared against databases of known sequences using BLAST or another comparison tool. MEGAN can then be used to compute and interactively explore the taxonomical content of the dataset, employing the NCBI taxonomy to summarize and order the results. |
|
0 |
1 |
7 |
7 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 |
0 |
0 |
214 |
214 |
4619 |
4619 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4619 |
4619 |
214 |
214 |
|
|
|
meme |
meme_dreme, meme_fimo, meme_meme, meme_psp_gen, meme_streme |
The MEME Suite allows the biologist to discover novel motifs in collections of unaligned nucleotideor protein sequences, and to perform a wide variety of other motif-based analyses. |
2015-12-13 |
http://meme-suite.org/ |
5.5.8 |
meme |
5.5.8 |
Up-to-date |
ChIP-seq |
Sequence motif discovery, Sequence motif recognition, Sequence motif comparison, Transcriptional regulatory element prediction |
Sequence motif discovery, Sequence motif recognition, Sequence motif comparison, Transcriptional regulatory element prediction |
Sequence sites, features and motifs, ChIP-seq, RNA immunoprecipitation, Epigenetics, Small molecules |
Sequence sites, features and motifs, ChIP-seq, RNA immunoprecipitation, Epigenetics, Small molecules |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/meme |
streme |
STREME |
STREME is accurate and versatile sequence motif discovery tool. The MEME Suite allows you to discover novel motifs in collections of unaligned nucleotide or protein sequences, and to perform a wide variety of other motif-based analyses. It provides motif discovery algorithms using both probabilistic (MEME) and discrete models (STREME), which have complementary strengths. It also allows discovery of motifs with arbitrary insertions and deletions (GLAM2). MEME-ChIP performs a comprehensive motif-based analysis of ChIP-seq and other large sequence datasets. |
|
3 |
0 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
4 |
4 |
0 |
469 |
574 |
21108 |
23489 |
1193 |
2768 |
10807 |
26966 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
150 |
50605 |
31915 |
3344 |
1662 |
https://usegalaxy.org/published/workflow?id=2049d38325423cfe, https://usegalaxy.org/published/workflow?id=ecb279a9114140ab |
|
|
meme_chip |
meme_chip |
Performs motif discovery, motif enrichment analysis and clustering on large nucleotide datasets. |
2018-03-15 |
http://meme-suite.org/ |
4.11.2 |
graphicsmagick |
1.3.26 |
To update |
ChIP-seq |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme_chip |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/meme_chip |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
741 |
818 |
6420 |
7338 |
1283 |
1287 |
7778 |
7795 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
15133 |
14198 |
2105 |
2024 |
https://dev.workflowhub.eu/workflows/1161?version=2, https://dev.workflowhub.eu/workflows/1285?version=2, https://usegalaxy.eu/published/workflow?id=0c619b25c1394a09, https://usegalaxy.eu/published/workflow?id=153ba1581743d31f, https://usegalaxy.eu/published/workflow?id=24ddd188da35b061, https://usegalaxy.eu/published/workflow?id=6514e610c79df72c, https://usegalaxy.eu/published/workflow?id=8fb156020285e049, https://usegalaxy.eu/published/workflow?id=ad4b347f9b68e127, https://usegalaxy.eu/published/workflow?id=b619339f4e1c6fdf, https://usegalaxy.eu/published/workflow?id=f5be5bcf9b9f171c, https://usegalaxy.org/published/workflow?id=59d34b4f0178120b, https://workflowhub.eu/workflows/1562?version=1, https://workflowhub.eu/workflows/1706?version=1 |
epigenetics/cut_and_run, transcriptomics/clipseq |
|
meningotype |
meningotype |
Assign sequence type to N. meningitidis genome assemblies |
2023-06-06 |
https://github.com/MDU-PHL/meningotype |
0.8.5 |
meningotype |
0.8.5 |
Up-to-date |
Sequence Analysis |
Genotyping, Multilocus sequence typing |
Multilocus sequence typing |
Microbiology, Genotype and phenotype |
Microbiology, Genotype and phenotype |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/meningotype |
meningotype |
meningotype |
In silico typing of Neisseria meningitidis contigs. |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
merlin |
merlin |
Pedigree Analysis package |
2020-04-15 |
http://csg.sph.umich.edu/abecasis/Merlin/ |
1.1.2 |
merlin |
1.1.2 |
Up-to-date |
Variant Analysis |
Haplotype mapping, Genetic mapping |
Haplotype mapping |
GWAS study, Mapping |
GWAS study, Mapping |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/merlin/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/merlin |
merlin |
Merlin |
Can be used for parametric and non-parametric linkage analysis, regression-based linkage analysis or association analysis for quantitative traits, ibd and kinship estimation, haplotyping, error detection and simulation |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
merqury |
merqury, merquryplot |
Merqury is a tool for evaluating genomes assemblies based of k-mer operations. |
2021-04-18 |
https://github.com/marbl/merqury |
1.3 |
merqury |
1.3 |
Up-to-date |
Assembly |
Genome assembly, k-mer counting, Scaffolding, Phasing, De-novo assembly |
Genome assembly, k-mer counting, Scaffolding, Phasing, De-novo assembly |
Sequence assembly, Whole genome sequencing, Plant biology |
Sequence assembly, Whole genome sequencing, Plant biology |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/merqury |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/merqury |
merqury |
Merqury |
Reference-free quality, completeness, and phasing assessment for genome assemblies.Evaluate genome assemblies with k-mers and more.Often, genome assembly projects have illumina whole genome sequencing reads available for the assembled individual.Merqury provides a set of tools for this purpose. |
|
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
544 |
544 |
3593 |
3593 |
203 |
203 |
1048 |
1048 |
176 |
176 |
1523 |
1523 |
76 |
76 |
396 |
396 |
6560 |
6560 |
999 |
999 |
https://dev.workflowhub.eu/workflows/1002?version=1, https://dev.workflowhub.eu/workflows/1004?version=1, https://dev.workflowhub.eu/workflows/1127?version=3, https://dev.workflowhub.eu/workflows/1128?version=1, https://dev.workflowhub.eu/workflows/1187?version=2, https://usegalaxy.eu/published/workflow?id=002a51bdef00e14d, https://usegalaxy.eu/published/workflow?id=01fe4c590e608103, https://usegalaxy.eu/published/workflow?id=023a0ee62dd1f593, https://usegalaxy.eu/published/workflow?id=032a7281a86eba0d, https://usegalaxy.eu/published/workflow?id=03bb4c20a1f4b4de, https://usegalaxy.eu/published/workflow?id=03be9d62e8e4a129, https://usegalaxy.eu/published/workflow?id=0444c98a3ca2a3ca, https://usegalaxy.eu/published/workflow?id=085c3a4c89d137b5, https://usegalaxy.eu/published/workflow?id=089e5e83b1de0511, https://usegalaxy.eu/published/workflow?id=0a3ebee985c26060, https://usegalaxy.eu/published/workflow?id=0f207a15b6f7fa10, https://usegalaxy.eu/published/workflow?id=1151052f4393852a, https://usegalaxy.eu/published/workflow?id=12b0bd336c76a874, https://usegalaxy.eu/published/workflow?id=1483534f49b826bf, https://usegalaxy.eu/published/workflow?id=194a05d42687b524, https://usegalaxy.eu/published/workflow?id=19bb57f8cfa48bb9, https://usegalaxy.eu/published/workflow?id=1ac0a15758277730, https://usegalaxy.eu/published/workflow?id=1af73dc855d0a5ed, https://usegalaxy.eu/published/workflow?id=1bb084f1bc102734, https://usegalaxy.eu/published/workflow?id=1d1ae39386b5c318, https://usegalaxy.eu/published/workflow?id=1da7ac8eaf891f39, https://usegalaxy.eu/published/workflow?id=1e02a7292e9974b1, https://usegalaxy.eu/published/workflow?id=1e7f4ba6261f979c, https://usegalaxy.eu/published/workflow?id=1f2a1438e41188f2, https://usegalaxy.eu/published/workflow?id=21a3f72851f29925, https://usegalaxy.eu/published/workflow?id=2294ef9515bcf972, https://usegalaxy.eu/published/workflow?id=2671a5f85b2cccfe, https://usegalaxy.eu/published/workflow?id=270b6f82efab28b2, https://usegalaxy.eu/published/workflow?id=29c97d43eeb8ed63, https://usegalaxy.eu/published/workflow?id=2e418c5810012e5a, https://usegalaxy.eu/published/workflow?id=3069c17b52decab4, https://usegalaxy.eu/published/workflow?id=3192f92ac4d389b8, https://usegalaxy.eu/published/workflow?id=342a5df69951e3d7, https://usegalaxy.eu/published/workflow?id=3480204a99bf4a35, https://usegalaxy.eu/published/workflow?id=379642036b6f5a66, https://usegalaxy.eu/published/workflow?id=399048afb4acef3d, https://usegalaxy.eu/published/workflow?id=3a3e2d50fe7a9ee3, https://usegalaxy.eu/published/workflow?id=3e255a5b7026d26e, https://usegalaxy.eu/published/workflow?id=3eb6663a66f8e69a, https://usegalaxy.eu/published/workflow?id=3f5414bb38b47fcf, https://usegalaxy.eu/published/workflow?id=416141b245073406, https://usegalaxy.eu/published/workflow?id=471eb8b4c54f897d, https://usegalaxy.eu/published/workflow?id=475ea16f943cc013, https://usegalaxy.eu/published/workflow?id=4856e3522b2ee059, https://usegalaxy.eu/published/workflow?id=497b82d3b92dc076, https://usegalaxy.eu/published/workflow?id=4c3a9b574f37eebb, https://usegalaxy.eu/published/workflow?id=4d41ee83fc0040d4, https://usegalaxy.eu/published/workflow?id=5115299e77df8104, https://usegalaxy.eu/published/workflow?id=54590ccd11ffbf65, https://usegalaxy.eu/published/workflow?id=57cc33ed64d71982, https://usegalaxy.eu/published/workflow?id=5ad406442ec21345, https://usegalaxy.eu/published/workflow?id=5bf6718e7d6158d2, https://usegalaxy.eu/published/workflow?id=5e1906290f5b4d8a, https://usegalaxy.eu/published/workflow?id=6573f3b1606b7f09, https://usegalaxy.eu/published/workflow?id=6865f33cffca4922, https://usegalaxy.eu/published/workflow?id=69be0fb8276753ec, https://usegalaxy.eu/published/workflow?id=69cdd404592535ec, https://usegalaxy.eu/published/workflow?id=6c14b08a7ef7e79a, https://usegalaxy.eu/published/workflow?id=700fa3ab11a8f3e2, https://usegalaxy.eu/published/workflow?id=71a6d128a09210f0, https://usegalaxy.eu/published/workflow?id=7337d15d121596da, https://usegalaxy.eu/published/workflow?id=79b5afb125e3c3da, https://usegalaxy.eu/published/workflow?id=847403b72dd346ff, https://usegalaxy.eu/published/workflow?id=8be366ad6a42408b, https://usegalaxy.eu/published/workflow?id=8f105de48f7f1d9d, https://usegalaxy.eu/published/workflow?id=915ffef5b14c871e, https://usegalaxy.eu/published/workflow?id=92760fc19ef120ce, https://usegalaxy.eu/published/workflow?id=92dafb3d1c06e074, https://usegalaxy.eu/published/workflow?id=95f420d8856bf725, https://usegalaxy.eu/published/workflow?id=9667bf36217083b7, https://usegalaxy.eu/published/workflow?id=9c0b67496dfe52b2, https://usegalaxy.eu/published/workflow?id=9d209bcdae1a475e, https://usegalaxy.eu/published/workflow?id=9f2d18f0d0896e8b, https://usegalaxy.eu/published/workflow?id=a3f082ff30357040, https://usegalaxy.eu/published/workflow?id=a6dd62ab4b9a0725, https://usegalaxy.eu/published/workflow?id=aa6dc57f5c67fb4b, https://usegalaxy.eu/published/workflow?id=ac6eb99f70d35999, https://usegalaxy.eu/published/workflow?id=ade6f36f6a035a73, https://usegalaxy.eu/published/workflow?id=ae74f60cd20d56bc, https://usegalaxy.eu/published/workflow?id=aef62f4d0bba003b, https://usegalaxy.eu/published/workflow?id=b211fceaecf41c9e, https://usegalaxy.eu/published/workflow?id=b4948afacccfefdb, https://usegalaxy.eu/published/workflow?id=b5de94e9cde071ab, https://usegalaxy.eu/published/workflow?id=b8baade87e733fce, https://usegalaxy.eu/published/workflow?id=bac84a7033c3423f, https://usegalaxy.eu/published/workflow?id=bc32937d505135ab, https://usegalaxy.eu/published/workflow?id=bc87309a8763d0b4, https://usegalaxy.eu/published/workflow?id=bcf99cc0469db276, https://usegalaxy.eu/published/workflow?id=bef0a7d604f2ebef, https://usegalaxy.eu/published/workflow?id=c4c2e669b86cffbc, https://usegalaxy.eu/published/workflow?id=c508c00e81018dd8, https://usegalaxy.eu/published/workflow?id=ca39822372847670, https://usegalaxy.eu/published/workflow?id=caba6d3d7db648e9, https://usegalaxy.eu/published/workflow?id=d02458f1d7d9c3f4, https://usegalaxy.eu/published/workflow?id=d172f927a489e9f8, https://usegalaxy.eu/published/workflow?id=d17d6029914d666b, https://usegalaxy.eu/published/workflow?id=d1bd5d8597c1d31d, https://usegalaxy.eu/published/workflow?id=d261bbd05889ce75, https://usegalaxy.eu/published/workflow?id=d67299c34e63f3d9, https://usegalaxy.eu/published/workflow?id=d924fafd8e042952, https://usegalaxy.eu/published/workflow?id=dc27453c438577f6, https://usegalaxy.eu/published/workflow?id=de9cf573314f416c, https://usegalaxy.eu/published/workflow?id=e138640778b7414c, https://usegalaxy.eu/published/workflow?id=e7aebe58411d97ed, https://usegalaxy.eu/published/workflow?id=e8f9e1d911683b22, https://usegalaxy.eu/published/workflow?id=e935d2c8ffb52588, https://usegalaxy.eu/published/workflow?id=ec79f14ab91cd933, https://usegalaxy.eu/published/workflow?id=f08b29e4cef76cd5, https://usegalaxy.eu/published/workflow?id=f1ca4289ee4f67bb, https://usegalaxy.eu/published/workflow?id=f38745208494d4ab, https://usegalaxy.eu/published/workflow?id=f3e17c8dd80def27, https://usegalaxy.eu/published/workflow?id=f578a097b4339025, https://usegalaxy.eu/published/workflow?id=f6a625946dea60fa, https://usegalaxy.eu/published/workflow?id=f7cdaf862e6599c0, https://usegalaxy.eu/published/workflow?id=f882d14fc5dabbb9, https://usegalaxy.eu/published/workflow?id=f91245e580319e65, https://usegalaxy.eu/published/workflow?id=fb015e398373ea8a, https://usegalaxy.eu/published/workflow?id=fba1671d835b6dd3, https://usegalaxy.eu/published/workflow?id=fc25c1f8c6667c87, https://usegalaxy.eu/published/workflow?id=fd649ac4d4872c81, https://usegalaxy.org.au/published/workflow?id=000c2f1884bc4687, https://usegalaxy.org.au/published/workflow?id=02eebe3d909206ab, https://usegalaxy.org.au/published/workflow?id=06564b19b0655c19, https://usegalaxy.org.au/published/workflow?id=0810be3d7d2b0322, https://usegalaxy.org.au/published/workflow?id=08fac3b4c128e597, https://usegalaxy.org.au/published/workflow?id=094655df3ccd0b00, https://usegalaxy.org.au/published/workflow?id=0af0ea50f1237952, https://usegalaxy.org.au/published/workflow?id=0c11e1ba5e8fa21b, https://usegalaxy.org.au/published/workflow?id=0cc8c8875df6bccb, https://usegalaxy.org.au/published/workflow?id=0df25e2dbd5e8ed5, https://usegalaxy.org.au/published/workflow?id=10355b2680374a03, https://usegalaxy.org.au/published/workflow?id=1905ec04d5841f09, https://usegalaxy.org.au/published/workflow?id=1ce2a725df3adb74, https://usegalaxy.org.au/published/workflow?id=1dcc1b25c9091fbf, https://usegalaxy.org.au/published/workflow?id=1eb3e1452c672480, https://usegalaxy.org.au/published/workflow?id=1f49c65625b9d2de, https://usegalaxy.org.au/published/workflow?id=2356584eac7fa234, https://usegalaxy.org.au/published/workflow?id=2470cb61ba51288c, https://usegalaxy.org.au/published/workflow?id=2d45d7138d8715b4, https://usegalaxy.org.au/published/workflow?id=319e9d693fac8dce, https://usegalaxy.org.au/published/workflow?id=328adfa7d90b1d54, https://usegalaxy.org.au/published/workflow?id=3604307ec2835628, https://usegalaxy.org.au/published/workflow?id=36f54eda8568355d, https://usegalaxy.org.au/published/workflow?id=371c9892d261cee2, https://usegalaxy.org.au/published/workflow?id=3df7f45b7b388f8c, https://usegalaxy.org.au/published/workflow?id=40666ceb68d101ac, https://usegalaxy.org.au/published/workflow?id=40740c32b9a550c9, https://usegalaxy.org.au/published/workflow?id=41282d51f9112552, https://usegalaxy.org.au/published/workflow?id=41795303a88d9e94, https://usegalaxy.org.au/published/workflow?id=4267bd1e4cfd1901, https://usegalaxy.org.au/published/workflow?id=434127690544d0e9, https://usegalaxy.org.au/published/workflow?id=478c79365fc9677f, https://usegalaxy.org.au/published/workflow?id=4cb69c84b73ea9dd, https://usegalaxy.org.au/published/workflow?id=4e7930c7286c6e9e, https://usegalaxy.org.au/published/workflow?id=4ebf1297793870e7, https://usegalaxy.org.au/published/workflow?id=51bad198f1fd1215, https://usegalaxy.org.au/published/workflow?id=543fb2d9431a7e13, https://usegalaxy.org.au/published/workflow?id=5550585ffc3d8d0e, https://usegalaxy.org.au/published/workflow?id=5b0c0e34394afed1, https://usegalaxy.org.au/published/workflow?id=5cd804644a34c8fd, https://usegalaxy.org.au/published/workflow?id=5f4f874e49515555, https://usegalaxy.org.au/published/workflow?id=60c0dec52cdca708, https://usegalaxy.org.au/published/workflow?id=63789b6f82172679, https://usegalaxy.org.au/published/workflow?id=68b2961117e62890, https://usegalaxy.org.au/published/workflow?id=6c27019d03dd49d8, https://usegalaxy.org.au/published/workflow?id=6c9129acb9d98afe, https://usegalaxy.org.au/published/workflow?id=6f76c43e6d2d7f74, https://usegalaxy.org.au/published/workflow?id=7168c01be9997823, https://usegalaxy.org.au/published/workflow?id=7909da83448d8bf4, https://usegalaxy.org.au/published/workflow?id=79bf7b0f5e9052d7, https://usegalaxy.org.au/published/workflow?id=81a5b96452c71a52, https://usegalaxy.org.au/published/workflow?id=82d0876385b5ac60, https://usegalaxy.org.au/published/workflow?id=8926e592f2e60863, https://usegalaxy.org.au/published/workflow?id=8a6233015db6dd24, https://usegalaxy.org.au/published/workflow?id=8bf8c9929249f37d, https://usegalaxy.org.au/published/workflow?id=8dd86497bc15d981, https://usegalaxy.org.au/published/workflow?id=8e8a5cce9f3f2f67, https://usegalaxy.org.au/published/workflow?id=91ee716be8bfd508, https://usegalaxy.org.au/published/workflow?id=9642aadb83c4f752, https://usegalaxy.org.au/published/workflow?id=970dc0d8bd74707f, https://usegalaxy.org.au/published/workflow?id=9804030358c3f844, https://usegalaxy.org.au/published/workflow?id=98d3def7da131b4c, https://usegalaxy.org.au/published/workflow?id=98f660971010d11d, https://usegalaxy.org.au/published/workflow?id=9e0bae0505ee7c07, https://usegalaxy.org.au/published/workflow?id=a02c102e179596cb, https://usegalaxy.org.au/published/workflow?id=a1015b83baa0eb6d, https://usegalaxy.org.au/published/workflow?id=a209f43d8a3cc853, https://usegalaxy.org.au/published/workflow?id=a345bf84eb9bf6b2, https://usegalaxy.org.au/published/workflow?id=a40dadc943a0db1e, https://usegalaxy.org.au/published/workflow?id=a525966251895f8a, https://usegalaxy.org.au/published/workflow?id=a740543c4e9808f1, https://usegalaxy.org.au/published/workflow?id=ac8bdc5a0b2d70cd, https://usegalaxy.org.au/published/workflow?id=ad10cd704268dcf0, https://usegalaxy.org.au/published/workflow?id=afab89bc468da8b3, https://usegalaxy.org.au/published/workflow?id=b19fa49405117317, https://usegalaxy.org.au/published/workflow?id=b1f45d2f8d8343e9, https://usegalaxy.org.au/published/workflow?id=b310af289ada88bc, https://usegalaxy.org.au/published/workflow?id=b5131e3a0ef2676e, https://usegalaxy.org.au/published/workflow?id=b9faf6a3f48fc11b, https://usegalaxy.org.au/published/workflow?id=be96bb47b6d6435a, https://usegalaxy.org.au/published/workflow?id=c556c2270200801d, https://usegalaxy.org.au/published/workflow?id=c6a71573a299eb3a, https://usegalaxy.org.au/published/workflow?id=c7e1f666a3366823, https://usegalaxy.org.au/published/workflow?id=c7f2d6490128dc3c, https://usegalaxy.org.au/published/workflow?id=c853aa707fcddf4e, https://usegalaxy.org.au/published/workflow?id=cbf022e349d726d9, https://usegalaxy.org.au/published/workflow?id=d06665e4bc7fff6d, https://usegalaxy.org.au/published/workflow?id=d298edda13b382e7, https://usegalaxy.org.au/published/workflow?id=d42d7b1aa47e870f, https://usegalaxy.org.au/published/workflow?id=d7f3fc810261e419, https://usegalaxy.org.au/published/workflow?id=d83d5ecf31c20490, https://usegalaxy.org.au/published/workflow?id=d957bfeb3cd03db0, https://usegalaxy.org.au/published/workflow?id=d9c181fd954b629a, https://usegalaxy.org.au/published/workflow?id=df11f09771e73e04, https://usegalaxy.org.au/published/workflow?id=df4e186069552649, https://usegalaxy.org.au/published/workflow?id=e031af90daa2cadf, https://usegalaxy.org.au/published/workflow?id=e28ca83f14f4ede5, https://usegalaxy.org.au/published/workflow?id=ea687c5613fcce27, https://usegalaxy.org.au/published/workflow?id=ecfb8a08e5a40e15, https://usegalaxy.org.au/published/workflow?id=f06370394b061e08, https://usegalaxy.org.au/published/workflow?id=f7a866159f1eaecf, https://usegalaxy.org.au/published/workflow?id=f895914e322c8b77, https://usegalaxy.org.au/published/workflow?id=fa37223950a91f34, https://usegalaxy.org.au/published/workflow?id=fe1e7fa0bc437ed8, https://usegalaxy.org.au/published/workflow?id=fea0e6c02c2f6274, https://usegalaxy.org.au/published/workflow?id=fff2e49bc90e38ca, https://usegalaxy.org/published/workflow?id=07e873a6d75dfe9f, https://usegalaxy.org/published/workflow?id=0993daadf2db5f51, https://usegalaxy.org/published/workflow?id=10d5e195501603bc, https://usegalaxy.org/published/workflow?id=1245e9435cbc3985, https://usegalaxy.org/published/workflow?id=137d0f05a71d7acb, https://usegalaxy.org/published/workflow?id=1b434bfc3aac0022, https://usegalaxy.org/published/workflow?id=1d24cc949c52e475, https://usegalaxy.org/published/workflow?id=1eec2586d1ff908b, https://usegalaxy.org/published/workflow?id=237ca9f36ca266e7, https://usegalaxy.org/published/workflow?id=242ef2e9dee35702, https://usegalaxy.org/published/workflow?id=25a9f0693ff6d327, https://usegalaxy.org/published/workflow?id=283bc048cc7a80f5, https://usegalaxy.org/published/workflow?id=284150bb1f296378, https://usegalaxy.org/published/workflow?id=2b41752b8518a87b, https://usegalaxy.org/published/workflow?id=2c5c627c08563398, https://usegalaxy.org/published/workflow?id=2d994cc02ec05ede, https://usegalaxy.org/published/workflow?id=2f1469dab87a3649, https://usegalaxy.org/published/workflow?id=305fb9f84b053713, https://usegalaxy.org/published/workflow?id=3179c157fa5a2fdd, https://usegalaxy.org/published/workflow?id=31a6145b0832fa48, https://usegalaxy.org/published/workflow?id=3753dcca4100e976, https://usegalaxy.org/published/workflow?id=3ba73f679558017c, https://usegalaxy.org/published/workflow?id=3db4eb1ecb588d44, https://usegalaxy.org/published/workflow?id=3f7550d5d2bf0b96, https://usegalaxy.org/published/workflow?id=4029a0c8fa23d375, https://usegalaxy.org/published/workflow?id=408c799822cbf6ea, https://usegalaxy.org/published/workflow?id=426358bd988cb39d, https://usegalaxy.org/published/workflow?id=435f0340bf00c940, https://usegalaxy.org/published/workflow?id=44781c8b0bd667ed, https://usegalaxy.org/published/workflow?id=45c0b677c4920d03, https://usegalaxy.org/published/workflow?id=484f8fcf21d67376, https://usegalaxy.org/published/workflow?id=498a8c6329ca5728, https://usegalaxy.org/published/workflow?id=49c9e8161a46667f, https://usegalaxy.org/published/workflow?id=4a0ad87aa5aa558a, https://usegalaxy.org/published/workflow?id=4bf38f5b45faa8a1, https://usegalaxy.org/published/workflow?id=4bf73376661baafd, https://usegalaxy.org/published/workflow?id=57e6345fda3e2682, https://usegalaxy.org/published/workflow?id=597c4d54f8a8ebe7, https://usegalaxy.org/published/workflow?id=5dfec2a3ae5fa765, https://usegalaxy.org/published/workflow?id=5edabfc62f58d8cf, https://usegalaxy.org/published/workflow?id=653d553ac2fa51c8, https://usegalaxy.org/published/workflow?id=65ccf48b7872e36c, https://usegalaxy.org/published/workflow?id=683e725f672b7d9b, https://usegalaxy.org/published/workflow?id=6b511b47176893e3, https://usegalaxy.org/published/workflow?id=6fc7497c86ebd8ee, https://usegalaxy.org/published/workflow?id=7072731b51e16923, https://usegalaxy.org/published/workflow?id=73c20d784b7ef81a, https://usegalaxy.org/published/workflow?id=771345c66d5b9700, https://usegalaxy.org/published/workflow?id=7adf904dea83e699, https://usegalaxy.org/published/workflow?id=7dba74c915f63dc1, https://usegalaxy.org/published/workflow?id=7f6900852a81d121, https://usegalaxy.org/published/workflow?id=81f1f0fd6d9235fd, https://usegalaxy.org/published/workflow?id=864da6858d34df08, https://usegalaxy.org/published/workflow?id=86c67855acbf6124, https://usegalaxy.org/published/workflow?id=8ccb42012dcb5db2, https://usegalaxy.org/published/workflow?id=8cfbaa14cff5a633, https://usegalaxy.org/published/workflow?id=8d605fbd33003d26, https://usegalaxy.org/published/workflow?id=90f5b512997c70f8, https://usegalaxy.org/published/workflow?id=932b3bc10186f73e, https://usegalaxy.org/published/workflow?id=936ed7447c8e0a2d, https://usegalaxy.org/published/workflow?id=93c1fef4472aa7a8, https://usegalaxy.org/published/workflow?id=950c7245a6c3f6e9, https://usegalaxy.org/published/workflow?id=961dac8100c6c70c, https://usegalaxy.org/published/workflow?id=96bd0007dceec123, https://usegalaxy.org/published/workflow?id=9938a81fb6911412, https://usegalaxy.org/published/workflow?id=9ab68c65337b893b, https://usegalaxy.org/published/workflow?id=9ddfdc9d6cacea88, https://usegalaxy.org/published/workflow?id=a8e0f77cd6ef49f9, https://usegalaxy.org/published/workflow?id=ab0be4897d5355ac, https://usegalaxy.org/published/workflow?id=acada5044d64a30a, https://usegalaxy.org/published/workflow?id=b12f99e2233fcca6, https://usegalaxy.org/published/workflow?id=b661fb850c4b4b01, https://usegalaxy.org/published/workflow?id=b6d535f210efa18e, https://usegalaxy.org/published/workflow?id=bb1cb6abfe84a646, https://usegalaxy.org/published/workflow?id=bbc894a79eb0e769, https://usegalaxy.org/published/workflow?id=bd6bfd338ffb9637, https://usegalaxy.org/published/workflow?id=bfd2e7e63d3e6856, https://usegalaxy.org/published/workflow?id=bfef75672b9c3ea4, https://usegalaxy.org/published/workflow?id=c09b8a0c96123cbb, https://usegalaxy.org/published/workflow?id=c0a9a2d53b8660de, https://usegalaxy.org/published/workflow?id=c983ea8a32662cd6, https://usegalaxy.org/published/workflow?id=cb4ccd3068819418, https://usegalaxy.org/published/workflow?id=cc50da71cdf6f244, https://usegalaxy.org/published/workflow?id=cfd5dc3c7bc1e832, https://usegalaxy.org/published/workflow?id=d08135fa13d1745e, https://usegalaxy.org/published/workflow?id=d2e8a6b39fe88f4c, https://usegalaxy.org/published/workflow?id=d3f35215e6f45d79, https://usegalaxy.org/published/workflow?id=d4b2b85db47c405e, https://usegalaxy.org/published/workflow?id=d4f0a7ccb09f1e55, https://usegalaxy.org/published/workflow?id=daaded719dcfd53b, https://usegalaxy.org/published/workflow?id=dae5d5e5df5c4dd7, https://usegalaxy.org/published/workflow?id=e12e642b88a0fe08, https://usegalaxy.org/published/workflow?id=e4dd39237df58884, https://usegalaxy.org/published/workflow?id=eaf96fa3c39c210b, https://usegalaxy.org/published/workflow?id=f1a54b10d4afce8f, https://usegalaxy.org/published/workflow?id=f93a4f6b5f3aaaed, https://usegalaxy.org/published/workflow?id=fa26fd51caea53c7, https://usegalaxy.org/published/workflow?id=fc7b14aafa0b421e, https://usegalaxy.org/published/workflow?id=fd155fcba9bed7ff, https://usegalaxy.org/published/workflow?id=fd40e50c9f1545ce, https://workflowhub.eu/workflows/1103?version=3, https://workflowhub.eu/workflows/1104?version=2, https://workflowhub.eu/workflows/1162?version=2, https://workflowhub.eu/workflows/1163?version=2, https://workflowhub.eu/workflows/1164?version=2, https://workflowhub.eu/workflows/1607?version=1, https://workflowhub.eu/workflows/1641?version=1, https://workflowhub.eu/workflows/1646?version=1, https://workflowhub.eu/workflows/403?version=9, https://workflowhub.eu/workflows/605?version=1, https://workflowhub.eu/workflows/606?version=2, https://workflowhub.eu/workflows/608?version=1, https://workflowhub.eu/workflows/612?version=23, https://workflowhub.eu/workflows/633?version=21, https://workflowhub.eu/workflows/641?version=25, https://workflowhub.eu/workflows/642?version=23, https://workflowhub.eu/workflows/701?version=1, https://workflowhub.eu/workflows/702?version=1, https://workflowhub.eu/workflows/751?version=16, https://workflowhub.eu/workflows/788?version=1, https://workflowhub.eu/workflows/789?version=1, https://workflowhub.eu/workflows/794?version=2 |
assembly/ERGA-post-assembly-QC, assembly/assembly-quality-control, assembly/vgp_genome_assembly |
|
merquryfk |
merquryfk_asmplot, merquryfk_cnplot, merquryfk_hapmaker, merquryfk_happlot, merquryfk_merquryfk |
FastK based version of Merqury |
2025-02-11 |
https://github.com/thegenemyers/MERQURY.FK |
1.1.1 |
merquryfk |
1.1.2 |
To update |
Sequence Analysis, Assembly |
|
|
|
|
iuc |
https://github.com/thegenemyers/MERQURY.FK |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/merquryfk |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
meryl |
meryl_arithmetic_kmers, meryl_count_kmers, meryl_filter_kmers, meryl_groups_kmers, meryl_histogram_kmers, meryl_print, meryl_trio_mode |
Meryl a k-mer counter. |
2021-04-05 |
https://github.com/marbl/meryl |
1.3 |
merqury |
1.3 |
Up-to-date |
Assembly |
k-mer counting |
k-mer counting |
Whole genome sequencing, Genomics, Sequence analysis, Sequencing |
Whole genome sequencing, Genomics, Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/meryl |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/meryl |
meryl |
Meryl |
Meryl is a tool for counting and working with sets of k-mers that was originally developed for use in the Celera Assembler and has since been migrated and maintained as part of Canu. |
|
7 |
0 |
7 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
2 |
2 |
15 |
15 |
209 |
209 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
211 |
211 |
16 |
16 |
https://usegalaxy.eu/published/workflow?id=0ccb3838765a8b84, https://usegalaxy.eu/published/workflow?id=10bde4e7f8dbd0c4, https://usegalaxy.eu/published/workflow?id=41c48e4632684f76, https://usegalaxy.org/published/workflow?id=5503f7835226bc04, https://usegalaxy.org/published/workflow?id=6988c29ae84d2788, https://usegalaxy.org/published/workflow?id=83898f7cbfb7f88e, https://usegalaxy.org/published/workflow?id=9f1aabc6f5d18d13, https://usegalaxy.org/published/workflow?id=af1f4dba9aaa0b52, https://workflowhub.eu/workflows/631?version=6, https://workflowhub.eu/workflows/632?version=10 |
|
|
metabat2 |
metabat2_jgi_summarize_bam_contig_depths, metabat2 |
MetaBAT2 (Metagenome Binning based on Abundance and Tetranucleotide frequency) is an automated metagenome binningsoftware that integrates empirical probabilistic distances of genome abundance and tetranucleotide frequency. |
2022-01-28 |
https://bitbucket.org/berkeleylab/metabat/src/master/ |
2.17 |
metabat2 |
2.18 |
To update |
Metagenomics |
Read binning, Sequence assembly, Genome annotation |
Read binning, Sequence assembly, Genome annotation |
Metagenomics, Sequence assembly, Metagenomic sequencing |
Metagenomics, Sequence assembly, Metagenomic sequencing |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/metabat2/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/metabat2 |
MetaBAT_2 |
MetaBAT 2 |
an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies | MetaBAT2 clusters metagenomic contigs into different "bins", each of which should correspond to a putative genome | MetaBAT2 uses nucleotide composition information and source strain abundance (measured by depth-of-coverage by aligning the reads to the contigs) to perform binning |
|
2 |
1 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
2 |
0 |
0 |
476 |
476 |
8413 |
8413 |
219 |
219 |
1312 |
1312 |
126 |
126 |
1248 |
1248 |
15 |
15 |
1281 |
1281 |
12254 |
12254 |
836 |
836 |
https://usegalaxy.eu/published/workflow?id=0563f58718be932d, https://usegalaxy.eu/published/workflow?id=1e5f1d9a51032e44, https://usegalaxy.eu/published/workflow?id=3f6c7249ef71ae41, https://usegalaxy.eu/published/workflow?id=43098b8afe78b071, https://usegalaxy.eu/published/workflow?id=7ecd92cb382d8168, https://usegalaxy.eu/published/workflow?id=83c5bf0208f4d217, https://usegalaxy.eu/published/workflow?id=87231a6a7938cb95, https://usegalaxy.eu/published/workflow?id=97312d273b6e8bd9, https://usegalaxy.eu/published/workflow?id=aa5b077da1d36b23, https://usegalaxy.eu/published/workflow?id=b0377f05f97b18b1, https://usegalaxy.eu/published/workflow?id=ce5c9287a67e6085, https://workflowhub.eu/workflows/1352?version=3 |
|
|
metabuli |
metabuli_classify |
Classifying metagenomes by jointly analysing both DNA and amino acid (AA) sequences |
2024-06-04 |
https://github.com/steineggerlab/Metabuli |
1.0.5 |
metabuli |
1.1.0 |
To update |
Sequence Analysis, Metagenomics |
Taxonomic classification |
Taxonomic classification |
Taxonomy |
Taxonomy |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/metabuli |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/metabuli |
metabuli |
metabuli |
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
metaeuk |
metaeuk_easy_predict |
MetaEuk is a modular toolkit designed for large-scale gene discovery andannotation in eukaryotic metagenomic contigs. Metaeuk combines the fast andsensitive homology search capabilities of MMseqs2 with a dynamic programmingprocedure to recover optimal exons sets. It reduces redundancies in multiplediscoveries of the same gene and resolves conflicting gene predictions onthe same strand. |
2020-08-04 |
https://github.com/soedinglab/metaeuk |
7.bba0d80 |
metaeuk |
6.a5d39d9 |
To update |
Sequence Analysis, Genome annotation |
Homology-based gene prediction |
Homology-based gene prediction |
Metagenomics, Gene and protein families |
Metagenomics, Gene and protein families |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaeuk |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/metaeuk |
MetaEuk |
MetaEuk |
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
50 |
50 |
496 |
496 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
496 |
496 |
50 |
50 |
https://usegalaxy.eu/published/workflow?id=9b9e1e28f3683f92 |
|
|
metagenomeseq_normalization |
metagenomeseq_normalizaton |
metagenomeSeq Normalization |
2017-03-27 |
https://bioconductor.org/packages/3.18/bioc/html/metagenomeSeq.html |
1.16.0-0.0.1 |
bioconductor-metagenomeseq |
1.43.0 |
To update |
Metagenomics |
Sequence visualisation, Statistical calculation |
Sequence visualisation, Statistical calculation |
Metagenomics, Sequencing |
Metagenomics, Sequencing |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/metagenomeseq |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/metagenomeseq |
metagenomeseq |
metagenomeSeq |
Designed to determine features (be it Operational Taxanomic Unit (OTU), species, etc.) that are differentially abundant between two or more groups of multiple samples. It is designed to address the effects of both normalization and under-sampling of microbial communities on disease association detection and the testing of feature correlations. |
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
17 |
23 |
546 |
762 |
31 |
56 |
290 |
526 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1288 |
836 |
79 |
48 |
|
|
|
metaphlan |
customize_metaphlan_database, extract_metaphlan_database, merge_metaphlan_tables, metaphlan |
MetaPhlAn for Metagenomic Phylogenetic Analysis |
2021-03-11 |
https://github.com/biobakery/MetaPhlAn |
4.1.1 |
metaphlan |
4.2.2 |
To update |
Metagenomics |
Taxonomic classification, Taxonomic classification |
Taxonomic classification, Taxonomic classification |
Metagenomics, Phylogenomics |
Metagenomics, Phylogenomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/metaphlan |
metaphlan |
MetaPhlAn |
Computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data. |
|
1 |
2 |
4 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
4 |
4 |
0 |
1170 |
1170 |
21392 |
21426 |
797 |
797 |
10266 |
10266 |
271 |
271 |
5248 |
5248 |
10 |
10 |
148 |
148 |
37088 |
37054 |
2248 |
2248 |
https://dev.workflowhub.eu/workflows/1088?version=1, https://dev.workflowhub.eu/workflows/1095?version=1, https://usegalaxy.eu/published/workflow?id=05f5f040337786bf, https://usegalaxy.eu/published/workflow?id=19de5cbae7f48103, https://usegalaxy.eu/published/workflow?id=21a17d6c473a88c0, https://usegalaxy.eu/published/workflow?id=39d36a7ce0ef268d, https://usegalaxy.eu/published/workflow?id=4d32b1b3ac0a7161, https://usegalaxy.eu/published/workflow?id=4f0daf8e9dd54127, https://usegalaxy.eu/published/workflow?id=4f21205e71cabd37, https://usegalaxy.eu/published/workflow?id=5f0faac42b0a5062, https://usegalaxy.eu/published/workflow?id=713a5485e2007f90, https://usegalaxy.eu/published/workflow?id=79b4ae4403772098, https://usegalaxy.eu/published/workflow?id=87cc0cd143a12c41, https://usegalaxy.eu/published/workflow?id=9472be79da012999, https://usegalaxy.eu/published/workflow?id=a8f829deb69b30ab, https://usegalaxy.eu/published/workflow?id=b14845359b702444, https://usegalaxy.eu/published/workflow?id=cb2df493f5e334f7, https://usegalaxy.eu/published/workflow?id=fdca6c9d394986bf, https://usegalaxy.fr/published/workflow?id=09e8293456ee6d99, https://usegalaxy.fr/published/workflow?id=c4f6062e51d0f45e, https://usegalaxy.org.au/published/workflow?id=6b7e565258a9da2a, https://workflowhub.eu/workflows/1451?version=2, https://workflowhub.eu/workflows/1466?version=2, https://workflowhub.eu/workflows/1470?version=1, https://workflowhub.eu/workflows/624?version=1 |
microbiome/metatranscriptomics, microbiome/metatranscriptomics-short, microbiome/taxonomic-profiling |
|
metasbt |
metasbt_index, metasbt_profile |
Microbial genomes characterization with Sequence Bloom Trees |
2025-08-22 |
https://github.com/cumbof/MetaSBT |
0.1.5 |
sed |
|
To update |
Metagenomics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/metasbt |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/metasbt |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
metawrapmg_binning |
metawrapmg_binning |
A flexible pipeline for genome-resolved metagenomic data analysis |
2024-04-11 |
https://github.com/bxlab/metaWRAP |
1.3.0 |
metawrap-mg |
1.3.0 |
Up-to-date |
Metagenomics |
Read binning, Sequence assembly, Genome annotation, Sequence trimming, Demultiplexing |
Read binning, Sequence assembly, Genome annotation, Sequence trimming, Demultiplexing |
Whole genome sequencing, Metagenomic sequencing, Metagenomics |
Whole genome sequencing, Metagenomic sequencing, Metagenomics |
galaxy-australia |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/metawrapmg |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/metawrapmg |
metawrap |
MetaWRAP |
MetaWRAP aims to be an easy-to-use metagenomic wrapper suite that accomplishes the core tasks of metagenomic analysis from start to finish: read quality control, assembly, visualization, taxonomic profiling, extracting draft genomes (binning), and functional annotation. |
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
66 |
66 |
437 |
437 |
0 |
0 |
0 |
0 |
60 |
60 |
485 |
485 |
0 |
0 |
0 |
0 |
922 |
922 |
126 |
126 |
|
|
|
mg_toolkit |
mg_toolkit_bulk_download, mg_toolkit_original_metadata |
Metagenomics toolkit enables scientists to download all of the sample metadata for a given study or sequence to a single csv file. |
2024-07-12 |
https://github.com/EBI-Metagenomics/emg-toolkit |
0.10.4 |
mg-toolkit |
0.10.4 |
Up-to-date |
Metagenomics |
Data retrieval |
Data retrieval |
Metagenomics |
Metagenomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/mg_toolkit |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/mg_toolkit |
mg-toolkit |
mg-toolkit |
Metagenomics toolkit enables scientists to download all of the sample metadata for a given study or sequence to a single csv file. |
|
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
6 |
13 |
13 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
13 |
6 |
6 |
|
|
|
micro_decon |
micro_decon |
An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing |
2025-08-05 |
https://github.com/donaldtmcknight/microdecon |
1.0.2 |
|
|
To update |
Metagenomics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/micro_decon/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/micro_decon |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
microsatbed |
microsatbed |
Select microsatellites for a bed file |
2024-07-21 |
https://github.com/lmdu/pytrf |
1.3.3 |
python |
|
To update |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/microsatbed |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/microsatbed |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
10 |
928 |
928 |
9 |
9 |
689 |
689 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1617 |
1617 |
19 |
19 |
https://usegalaxy.eu/published/workflow?id=3b94f511c52da835 |
|
|
migmap |
migmap |
mapper for full-length T- and B-cell repertoire sequencing |
2017-09-29 |
https://github.com/mikessh/migmap |
1.0.3 |
migmap |
1.0.3 |
Up-to-date |
RNA, Sequence Analysis |
Sequence analysis, Read mapping |
Sequence analysis, Read mapping |
Immunoproteins, genes and antigens, Sequence analysis |
Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/migmap |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/migmap |
MiGMAP |
MiGMAP |
Mapper for full-length T- and B-cell repertoire sequencing. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
26 |
34 |
1030 |
1232 |
73 |
95 |
1087 |
1452 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2684 |
2117 |
129 |
99 |
|
|
|
minia |
minia |
Short-read assembler based on a de Bruijn graph |
2020-04-08 |
https://gatb.inria.fr/software/minia/ |
3.2.6 |
minia |
3.2.6 |
Up-to-date |
Assembly |
Genome assembly |
Genome assembly |
Sequence assembly |
Sequence assembly |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/minia |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/minia |
minia |
Minia |
Short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. |
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
267 |
267 |
7144 |
7144 |
0 |
0 |
0 |
0 |
71 |
71 |
316 |
316 |
0 |
0 |
0 |
0 |
7460 |
7460 |
338 |
338 |
https://usegalaxy.eu/published/workflow?id=9ba580ba8b01db40 |
|
|
miniasm |
miniasm |
Miniasm - Ultrafast de novo assembly for long noisy reads (though having no consensus step) |
2019-06-18 |
https://github.com/lh3/miniasm |
0.3_r179 |
miniasm |
0.3 |
To update |
Assembly |
De-novo assembly |
De-novo assembly |
Genomics, Sequence assembly |
Genomics, Sequence assembly |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/miniasm |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/miniasm |
miniasm |
miniasm |
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
605 |
643 |
12146 |
14127 |
501 |
502 |
9362 |
9371 |
90 |
90 |
1063 |
1063 |
12 |
12 |
147 |
147 |
24708 |
22718 |
1247 |
1208 |
https://dev.workflowhub.eu/workflows/1107?version=1, https://usegalaxy.eu/published/workflow?id=249c115413f17f28, https://usegalaxy.eu/published/workflow?id=32d2f5340098bcbd, https://usegalaxy.eu/published/workflow?id=39837ca09374598b, https://usegalaxy.eu/published/workflow?id=44e53ea319e07daa, https://usegalaxy.eu/published/workflow?id=b4de76c0a4d0e23a, https://usegalaxy.eu/published/workflow?id=c48807045e258dd8, https://usegalaxy.eu/published/workflow?id=dc7107896a3f2964, https://usegalaxy.org.au/published/workflow?id=d9571b3dfef34e5e, https://workflowhub.eu/workflows/1477?version=1, https://workflowhub.eu/workflows/406?version=1 |
microbiome/plasmid-metagenomics-nanopore |
|
minimap2 |
minimap2 |
A fast pairwise aligner for genomic and spliced nucleotide sequences |
2017-11-03 |
https://github.com/lh3/minimap2 |
2.28 |
minimap2 |
2.30 |
To update |
Next Gen Mappers |
Pairwise sequence alignment |
Pairwise sequence alignment |
Mapping |
Mapping |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/minimap2 |
minimap2 |
Minimap2 |
Pairwise aligner for genomic and spliced nucleotide sequences |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
4771 |
4934 |
389318 |
396517 |
4588 |
4594 |
127377 |
127922 |
1298 |
1298 |
26177 |
26177 |
146 |
146 |
4431 |
4431 |
555047 |
547303 |
10972 |
10803 |
https://dev.workflowhub.eu/workflows/1002?version=1, https://dev.workflowhub.eu/workflows/1083?version=1, https://dev.workflowhub.eu/workflows/1087?version=2, https://dev.workflowhub.eu/workflows/1107?version=1, https://dev.workflowhub.eu/workflows/1127?version=3, https://dev.workflowhub.eu/workflows/1132?version=2, https://dev.workflowhub.eu/workflows/1148?version=2, https://dev.workflowhub.eu/workflows/1154?version=2, https://dev.workflowhub.eu/workflows/1187?version=2, https://dev.workflowhub.eu/workflows/1197?version=2, https://dev.workflowhub.eu/workflows/132?version=1, https://dev.workflowhub.eu/workflows/1380?version=1, https://dev.workflowhub.eu/workflows/144?version=1, https://dev.workflowhub.eu/workflows/195?version=2, https://dev.workflowhub.eu/workflows/233?version=1, https://dev.workflowhub.eu/workflows/38?version=1, https://usegalaxy.eu/published/workflow?id=032a7281a86eba0d, https://usegalaxy.eu/published/workflow?id=03bb4c20a1f4b4de, https://usegalaxy.eu/published/workflow?id=0444c98a3ca2a3ca, https://usegalaxy.eu/published/workflow?id=09c7069ae409c362, https://usegalaxy.eu/published/workflow?id=0a3ebee985c26060, https://usegalaxy.eu/published/workflow?id=0c92c3c322c3effe, https://usegalaxy.eu/published/workflow?id=0f207a15b6f7fa10, https://usegalaxy.eu/published/workflow?id=0f6a7bd5362e4a2b, https://usegalaxy.eu/published/workflow?id=12b0bd336c76a874, https://usegalaxy.eu/published/workflow?id=14714876dda7186d, https://usegalaxy.eu/published/workflow?id=152223c8aed27357, https://usegalaxy.eu/published/workflow?id=1af73dc855d0a5ed, https://usegalaxy.eu/published/workflow?id=1b38e0d69e366be1, https://usegalaxy.eu/published/workflow?id=1cc3b4f1b50ba427, https://usegalaxy.eu/published/workflow?id=1ce406de61de8492, https://usegalaxy.eu/published/workflow?id=1d1ae39386b5c318, https://usegalaxy.eu/published/workflow?id=1e7f4ba6261f979c, https://usegalaxy.eu/published/workflow?id=2294ef9515bcf972, https://usegalaxy.eu/published/workflow?id=249c115413f17f28, https://usegalaxy.eu/published/workflow?id=2880a32a52d27743, https://usegalaxy.eu/published/workflow?id=29c97d43eeb8ed63, https://usegalaxy.eu/published/workflow?id=2b00b6498a2b4779, https://usegalaxy.eu/published/workflow?id=2d9d4445a1871230, https://usegalaxy.eu/published/workflow?id=2e93613c688ea52e, https://usegalaxy.eu/published/workflow?id=2fc2d96e80428077, https://usegalaxy.eu/published/workflow?id=309969a261189b5f, https://usegalaxy.eu/published/workflow?id=30dc526dcfa500df, https://usegalaxy.eu/published/workflow?id=3192f92ac4d389b8, https://usegalaxy.eu/published/workflow?id=32d2f5340098bcbd, https://usegalaxy.eu/published/workflow?id=344cd3a3c2ce5302, https://usegalaxy.eu/published/workflow?id=35a9136ddf37d589, https://usegalaxy.eu/published/workflow?id=38f12705279b5dfa, https://usegalaxy.eu/published/workflow?id=39837ca09374598b, https://usegalaxy.eu/published/workflow?id=399048afb4acef3d, https://usegalaxy.eu/published/workflow?id=3cf3dd9727b7ac92, https://usegalaxy.eu/published/workflow?id=3f0b104a74acf869, https://usegalaxy.eu/published/workflow?id=429ae28a178cd07c, https://usegalaxy.eu/published/workflow?id=44e53ea319e07daa, https://usegalaxy.eu/published/workflow?id=476db04368d5e90c, https://usegalaxy.eu/published/workflow?id=49ce9e738fadef4a, https://usegalaxy.eu/published/workflow?id=4d97068a725c975c, https://usegalaxy.eu/published/workflow?id=529f30e894beacc2, https://usegalaxy.eu/published/workflow?id=5500de2961f7470c, https://usegalaxy.eu/published/workflow?id=56d1f85b0b58ed27, https://usegalaxy.eu/published/workflow?id=57cfe5062c8e01bf, https://usegalaxy.eu/published/workflow?id=5826e573b6f93762, https://usegalaxy.eu/published/workflow?id=5bf6718e7d6158d2, https://usegalaxy.eu/published/workflow?id=5f29105e842716db, https://usegalaxy.eu/published/workflow?id=60e0b2a28a900178, https://usegalaxy.eu/published/workflow?id=64abcddeb516a712, https://usegalaxy.eu/published/workflow?id=6865f33cffca4922, https://usegalaxy.eu/published/workflow?id=69be0fb8276753ec, https://usegalaxy.eu/published/workflow?id=6aa2891bd2b41f32, https://usegalaxy.eu/published/workflow?id=6c14b08a7ef7e79a, https://usegalaxy.eu/published/workflow?id=700fa3ab11a8f3e2, https://usegalaxy.eu/published/workflow?id=70d3ebf31940bfb3, https://usegalaxy.eu/published/workflow?id=7bdd9ad918edab0b, https://usegalaxy.eu/published/workflow?id=7cc253b53379b727, https://usegalaxy.eu/published/workflow?id=816815a93cc68244, https://usegalaxy.eu/published/workflow?id=82a60d94d699efbf, https://usegalaxy.eu/published/workflow?id=83a1b8949d87e3da, https://usegalaxy.eu/published/workflow?id=84414f3441946702, https://usegalaxy.eu/published/workflow?id=87231a6a7938cb95, https://usegalaxy.eu/published/workflow?id=8b2f53745e720d0f, https://usegalaxy.eu/published/workflow?id=8f105de48f7f1d9d, https://usegalaxy.eu/published/workflow?id=90f993a1b245eb68, https://usegalaxy.eu/published/workflow?id=915ffef5b14c871e, https://usegalaxy.eu/published/workflow?id=9667bf36217083b7, https://usegalaxy.eu/published/workflow?id=9ba580ba8b01db40, https://usegalaxy.eu/published/workflow?id=9d209bcdae1a475e, https://usegalaxy.eu/published/workflow?id=a20e806c2bdba5c1, https://usegalaxy.eu/published/workflow?id=a337bfb2eb1e583f, https://usegalaxy.eu/published/workflow?id=a3f082ff30357040, https://usegalaxy.eu/published/workflow?id=a4f50449afde4a05, https://usegalaxy.eu/published/workflow?id=a705370bc2c13d5c, https://usegalaxy.eu/published/workflow?id=a84bac86ec183d46, https://usegalaxy.eu/published/workflow?id=aada0111f835ce49, https://usegalaxy.eu/published/workflow?id=ade6f36f6a035a73, https://usegalaxy.eu/published/workflow?id=aef62f4d0bba003b, https://usegalaxy.eu/published/workflow?id=b2dfa74f55a73409, https://usegalaxy.eu/published/workflow?id=b4de76c0a4d0e23a, https://usegalaxy.eu/published/workflow?id=b5de94e9cde071ab, https://usegalaxy.eu/published/workflow?id=b97532c398b821a2, https://usegalaxy.eu/published/workflow?id=bac84a7033c3423f, https://usegalaxy.eu/published/workflow?id=c48807045e258dd8, https://usegalaxy.eu/published/workflow?id=c879060c00aab94f, https://usegalaxy.eu/published/workflow?id=c9ef2d2ce92e2dfb, https://usegalaxy.eu/published/workflow?id=ca39822372847670, https://usegalaxy.eu/published/workflow?id=cb54883452a73019, https://usegalaxy.eu/published/workflow?id=cc2bc81352d2e2cd, https://usegalaxy.eu/published/workflow?id=cdf2f02428f5f83f, https://usegalaxy.eu/published/workflow?id=d02458f1d7d9c3f4, https://usegalaxy.eu/published/workflow?id=d0ae255151450dad, https://usegalaxy.eu/published/workflow?id=d172f927a489e9f8, https://usegalaxy.eu/published/workflow?id=d17d6029914d666b, https://usegalaxy.eu/published/workflow?id=d1bd5d8597c1d31d, https://usegalaxy.eu/published/workflow?id=d215a2e554fd83bc, https://usegalaxy.eu/published/workflow?id=d261bbd05889ce75, https://usegalaxy.eu/published/workflow?id=d2f75f70c33394ee, https://usegalaxy.eu/published/workflow?id=d4a6fb334f5dd10e, https://usegalaxy.eu/published/workflow?id=d67299c34e63f3d9, https://usegalaxy.eu/published/workflow?id=d924fafd8e042952, https://usegalaxy.eu/published/workflow?id=dc7107896a3f2964, https://usegalaxy.eu/published/workflow?id=dd3193aaaf08e798, https://usegalaxy.eu/published/workflow?id=df08e520ec3dbcb7, https://usegalaxy.eu/published/workflow?id=e271d95a671182ec, https://usegalaxy.eu/published/workflow?id=ea485dbabc76488d, https://usegalaxy.eu/published/workflow?id=ecf48fa50af560a0, https://usegalaxy.eu/published/workflow?id=efb58bba65393347, https://usegalaxy.eu/published/workflow?id=f08b29e4cef76cd5, https://usegalaxy.eu/published/workflow?id=f3e17c8dd80def27, https://usegalaxy.eu/published/workflow?id=f7cdaf862e6599c0, https://usegalaxy.eu/published/workflow?id=f882d14fc5dabbb9, https://usegalaxy.eu/published/workflow?id=f91245e580319e65, https://usegalaxy.eu/published/workflow?id=faf99fbb0fa792b9, https://usegalaxy.eu/published/workflow?id=fc0b9efa7d2e61e6, https://usegalaxy.fr/published/workflow?id=356dced9687596b7, https://usegalaxy.fr/published/workflow?id=61235264d5d2f666, https://usegalaxy.fr/published/workflow?id=727cfdb7c79287d1, https://usegalaxy.fr/published/workflow?id=776ef2fa51094ba6, https://usegalaxy.fr/published/workflow?id=e3c04a30258421aa, https://usegalaxy.org.au/published/workflow?id=000c2f1884bc4687, https://usegalaxy.org.au/published/workflow?id=06564b19b0655c19, https://usegalaxy.org.au/published/workflow?id=0810be3d7d2b0322, https://usegalaxy.org.au/published/workflow?id=094655df3ccd0b00, https://usegalaxy.org.au/published/workflow?id=0a3fb089674de144, https://usegalaxy.org.au/published/workflow?id=0c11e1ba5e8fa21b, https://usegalaxy.org.au/published/workflow?id=0c421197e022f323, https://usegalaxy.org.au/published/workflow?id=0c6f7bfc826433c4, https://usegalaxy.org.au/published/workflow?id=0df25e2dbd5e8ed5, https://usegalaxy.org.au/published/workflow?id=0e11619979c2830c, https://usegalaxy.org.au/published/workflow?id=1905ec04d5841f09, https://usegalaxy.org.au/published/workflow?id=1ce2a725df3adb74, https://usegalaxy.org.au/published/workflow?id=1dcc1b25c9091fbf, https://usegalaxy.org.au/published/workflow?id=1f49c65625b9d2de, https://usegalaxy.org.au/published/workflow?id=1ff6aabb7e3954ac, https://usegalaxy.org.au/published/workflow?id=2356584eac7fa234, https://usegalaxy.org.au/published/workflow?id=244ea5e94237ebad, https://usegalaxy.org.au/published/workflow?id=25d52afddaa3451b, https://usegalaxy.org.au/published/workflow?id=324c683a8e2fa5b0, https://usegalaxy.org.au/published/workflow?id=328adfa7d90b1d54, https://usegalaxy.org.au/published/workflow?id=40740c32b9a550c9, https://usegalaxy.org.au/published/workflow?id=41282d51f9112552, https://usegalaxy.org.au/published/workflow?id=434127690544d0e9, https://usegalaxy.org.au/published/workflow?id=45e9910f46a210d8, https://usegalaxy.org.au/published/workflow?id=47ce6a2d30887637, https://usegalaxy.org.au/published/workflow?id=4871f853090e8be8, https://usegalaxy.org.au/published/workflow?id=48a60965b6b3ff54, https://usegalaxy.org.au/published/workflow?id=4bc8ac41ecff7daf, https://usegalaxy.org.au/published/workflow?id=4cb69c84b73ea9dd, https://usegalaxy.org.au/published/workflow?id=4e7930c7286c6e9e, https://usegalaxy.org.au/published/workflow?id=4ebf1297793870e7, https://usegalaxy.org.au/published/workflow?id=543fb2d9431a7e13, https://usegalaxy.org.au/published/workflow?id=557601292ea0f6f3, https://usegalaxy.org.au/published/workflow?id=69d91340fc7effa2, https://usegalaxy.org.au/published/workflow?id=6f76c43e6d2d7f74, https://usegalaxy.org.au/published/workflow?id=7168c01be9997823, https://usegalaxy.org.au/published/workflow?id=76a0a3af8de11622, https://usegalaxy.org.au/published/workflow?id=7909da83448d8bf4, https://usegalaxy.org.au/published/workflow?id=79bf7b0f5e9052d7, https://usegalaxy.org.au/published/workflow?id=81a5b96452c71a52, https://usegalaxy.org.au/published/workflow?id=82d0876385b5ac60, https://usegalaxy.org.au/published/workflow?id=857e482acfcb2dba, https://usegalaxy.org.au/published/workflow?id=888f8377eb6eabf2, https://usegalaxy.org.au/published/workflow?id=932bad88f8dc8d33, https://usegalaxy.org.au/published/workflow?id=9c60b83feaa22415, https://usegalaxy.org.au/published/workflow?id=a01c3004bcef9dd3, https://usegalaxy.org.au/published/workflow?id=a1015b83baa0eb6d, https://usegalaxy.org.au/published/workflow?id=a209f43d8a3cc853, https://usegalaxy.org.au/published/workflow?id=a40dadc943a0db1e, https://usegalaxy.org.au/published/workflow?id=a740543c4e9808f1, https://usegalaxy.org.au/published/workflow?id=ac8bdc5a0b2d70cd, https://usegalaxy.org.au/published/workflow?id=b310af289ada88bc, https://usegalaxy.org.au/published/workflow?id=b59fada651043735, https://usegalaxy.org.au/published/workflow?id=ba7a9d4c857d26b7, https://usegalaxy.org.au/published/workflow?id=bf80ef6e5f37deb7, https://usegalaxy.org.au/published/workflow?id=c556c2270200801d, https://usegalaxy.org.au/published/workflow?id=c853aa707fcddf4e, https://usegalaxy.org.au/published/workflow?id=cbf022e349d726d9, https://usegalaxy.org.au/published/workflow?id=d69a765cfc82a399, https://usegalaxy.org.au/published/workflow?id=d83d5ecf31c20490, https://usegalaxy.org.au/published/workflow?id=d9571b3dfef34e5e, https://usegalaxy.org.au/published/workflow?id=e5dfeff4a3068f36, https://usegalaxy.org.au/published/workflow?id=ecfb8a08e5a40e15, https://usegalaxy.org.au/published/workflow?id=f06370394b061e08, https://usegalaxy.org.au/published/workflow?id=f895914e322c8b77, https://usegalaxy.org.au/published/workflow?id=fba0eb562a710733, https://usegalaxy.org.au/published/workflow?id=fc3c83b11f527977, https://usegalaxy.org.au/published/workflow?id=fea0e6c02c2f6274, https://usegalaxy.org/published/workflow?id=00381bbae3fd7e78, https://usegalaxy.org/published/workflow?id=005924662f68a480, https://usegalaxy.org/published/workflow?id=0596162a499b4074, https://usegalaxy.org/published/workflow?id=10d5e195501603bc, https://usegalaxy.org/published/workflow?id=1b434bfc3aac0022, https://usegalaxy.org/published/workflow?id=2135b0255284752c, https://usegalaxy.org/published/workflow?id=237ca9f36ca266e7, https://usegalaxy.org/published/workflow?id=242ef2e9dee35702, https://usegalaxy.org/published/workflow?id=258198c0907e6e30, https://usegalaxy.org/published/workflow?id=29ba77708cdafe0f, https://usegalaxy.org/published/workflow?id=2ded909e7e3a9962, https://usegalaxy.org/published/workflow?id=2f1469dab87a3649, https://usegalaxy.org/published/workflow?id=3179c157fa5a2fdd, https://usegalaxy.org/published/workflow?id=3753dcca4100e976, https://usegalaxy.org/published/workflow?id=38911ba6f66d80f6, https://usegalaxy.org/published/workflow?id=3e703abaeb870f6f, https://usegalaxy.org/published/workflow?id=426358bd988cb39d, https://usegalaxy.org/published/workflow?id=4357180d40560019, https://usegalaxy.org/published/workflow?id=4458439388155d92, https://usegalaxy.org/published/workflow?id=45c0b677c4920d03, https://usegalaxy.org/published/workflow?id=49c9e8161a46667f, https://usegalaxy.org/published/workflow?id=4bf38f5b45faa8a1, https://usegalaxy.org/published/workflow?id=574e42683dc3961b, https://usegalaxy.org/published/workflow?id=5edabfc62f58d8cf, https://usegalaxy.org/published/workflow?id=63adc811e3ae529d, https://usegalaxy.org/published/workflow?id=65ccf48b7872e36c, https://usegalaxy.org/published/workflow?id=6d778eeb176d563c, https://usegalaxy.org/published/workflow?id=6d925811544f594b, https://usegalaxy.org/published/workflow?id=6fc7497c86ebd8ee, https://usegalaxy.org/published/workflow?id=73c20d784b7ef81a, https://usegalaxy.org/published/workflow?id=771345c66d5b9700, https://usegalaxy.org/published/workflow?id=7adf904dea83e699, https://usegalaxy.org/published/workflow?id=86c67855acbf6124, https://usegalaxy.org/published/workflow?id=88d0b64011c3148c, https://usegalaxy.org/published/workflow?id=8ccb42012dcb5db2, https://usegalaxy.org/published/workflow?id=8e9a94fe8e3fef9d, https://usegalaxy.org/published/workflow?id=8ec186ed3f0470e2, https://usegalaxy.org/published/workflow?id=950c7245a6c3f6e9, https://usegalaxy.org/published/workflow?id=953d9cbe05e632a8, https://usegalaxy.org/published/workflow?id=96bd0007dceec123, https://usegalaxy.org/published/workflow?id=9ab68c65337b893b, https://usegalaxy.org/published/workflow?id=9adf8691809326e5, https://usegalaxy.org/published/workflow?id=a8b9252fad5fe06a, https://usegalaxy.org/published/workflow?id=b12f99e2233fcca6, https://usegalaxy.org/published/workflow?id=bcdc5ce2ea8700fc, https://usegalaxy.org/published/workflow?id=c09b8a0c96123cbb, https://usegalaxy.org/published/workflow?id=c12e6b7896f8e114, https://usegalaxy.org/published/workflow?id=c3ea8fa3bb202dc6, https://usegalaxy.org/published/workflow?id=c7b2d2ccc4b0dec5, https://usegalaxy.org/published/workflow?id=cb4ccd3068819418, https://usegalaxy.org/published/workflow?id=cb810cdaa4915f4b, https://usegalaxy.org/published/workflow?id=cc50da71cdf6f244, https://usegalaxy.org/published/workflow?id=cc6ee582a6e5cae2, https://usegalaxy.org/published/workflow?id=cfa9e6e722b086c8, https://usegalaxy.org/published/workflow?id=cfd5dc3c7bc1e832, https://usegalaxy.org/published/workflow?id=d2e8a6b39fe88f4c, https://usegalaxy.org/published/workflow?id=d3428dd172a78102, https://usegalaxy.org/published/workflow?id=d4b2b85db47c405e, https://usegalaxy.org/published/workflow?id=e12324f5e3b930fd, https://usegalaxy.org/published/workflow?id=e12e642b88a0fe08, https://usegalaxy.org/published/workflow?id=e1dcdc125122f561, https://usegalaxy.org/published/workflow?id=e4d260d46b516b4f, https://usegalaxy.org/published/workflow?id=eaf96fa3c39c210b, https://usegalaxy.org/published/workflow?id=f93a4f6b5f3aaaed, https://usegalaxy.org/published/workflow?id=fd155fcba9bed7ff, https://workflowhub.eu/workflows/100?version=1, https://workflowhub.eu/workflows/102?version=1, https://workflowhub.eu/workflows/1061?version=1, https://workflowhub.eu/workflows/1063?version=5, https://workflowhub.eu/workflows/1104?version=2, https://workflowhub.eu/workflows/111?version=5, https://workflowhub.eu/workflows/1163?version=2, https://workflowhub.eu/workflows/1327?version=6, https://workflowhub.eu/workflows/1469?version=1, https://workflowhub.eu/workflows/1477?version=1, https://workflowhub.eu/workflows/1479?version=1, https://workflowhub.eu/workflows/1492?version=2, https://workflowhub.eu/workflows/1599?version=1, https://workflowhub.eu/workflows/1604?version=1, https://workflowhub.eu/workflows/1607?version=1, https://workflowhub.eu/workflows/1612?version=1, https://workflowhub.eu/workflows/1616?version=1, https://workflowhub.eu/workflows/1641?version=1, https://workflowhub.eu/workflows/1741?version=1, https://workflowhub.eu/workflows/227?version=1, https://workflowhub.eu/workflows/228?version=1, https://workflowhub.eu/workflows/237?version=2, https://workflowhub.eu/workflows/406?version=1, https://workflowhub.eu/workflows/50?version=1, https://workflowhub.eu/workflows/51?version=1, https://workflowhub.eu/workflows/563?version=1, https://workflowhub.eu/workflows/606?version=2, https://workflowhub.eu/workflows/633?version=21, https://workflowhub.eu/workflows/701?version=1, https://workflowhub.eu/workflows/751?version=16, https://workflowhub.eu/workflows/788?version=1, https://workflowhub.eu/workflows/789?version=1 |
assembly/ERGA-post-assembly-QC, assembly/assembly-with-preprocessing, assembly/largegenome, assembly/vgp_genome_assembly, microbiome/metaplasmidome_query, microbiome/pathogen-detection-from-nanopore-foodborne-data, microbiome/plasmid-metagenomics-nanopore |
|
miniprot |
miniprot, miniprot_index |
Align a protein sequence against a genome with affine gap penalty, splicing and frameshift. |
2022-09-19 |
https://github.com/lh3/miniprot |
0.18 |
miniprot |
0.18 |
Up-to-date |
Sequence Analysis |
Sequence alignment, Protein sequence analysis |
Sequence alignment, Protein sequence analysis |
Sequence sites, features and motifs, Sequence analysis |
Sequence sites, features and motifs, Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/miniprot |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/miniprot |
miniprot |
miniprot |
Miniprot aligns a protein sequence against a genome with affine gap penalty, splicing and frameshift. It is primarily intended for annotating protein-coding genes in a new species using known genes from other species. |
|
2 |
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
85 |
85 |
4896 |
4896 |
26 |
26 |
275 |
275 |
0 |
0 |
0 |
0 |
19 |
19 |
191 |
191 |
5362 |
5362 |
130 |
130 |
https://usegalaxy.eu/published/workflow?id=0c92c3c322c3effe |
|
|
mirmachine |
mirmachine |
Tool to detect miRNA in genome sequences |
2024-03-15 |
https://github.com/sinanugur/MirMachine |
0.3.0.1 |
mirmachine |
0.3.0.1 |
Up-to-date |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/mirmachine |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/mirmachine |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
5 |
7 |
7 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 |
7 |
5 |
5 |
|
|
|
mirnature |
mirnature |
Computational detection of canonical microRNAs |
2022-12-11 |
https://github.com/Bierinformatik/miRNAture |
1.1 |
mirnature |
1.1 |
Up-to-date |
RNA, Sequence Analysis |
|
|
|
|
iuc |
https://github.com/Bierinformatik/miRNAture |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/mirnature |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
10 |
10 |
22 |
22 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
22 |
22 |
10 |
10 |
|
|
|
mitobim |
mitobim |
assemble mitochondrial genomes |
2020-12-29 |
https://github.com/chrishah/MITObim |
1.9.1 |
mitobim |
1.9.1 |
Up-to-date |
Assembly |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/mitobim |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/mitobim |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
151 |
151 |
1293 |
1293 |
0 |
0 |
0 |
0 |
30 |
30 |
394 |
394 |
0 |
0 |
0 |
0 |
1687 |
1687 |
181 |
181 |
|
|
|
mitos |
mitos, mitos2 |
de-novo annotation of metazoan mitochondrial genomes |
2020-02-18 |
http://mitos.bioinf.uni-leipzig.de/ |
1.1.7 |
mitos |
2.1.9 |
To update |
Sequence Analysis |
Genome annotation |
Genome annotation |
Zoology, Whole genome sequencing |
Zoology, Whole genome sequencing |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/mitos |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/mitos |
mitos |
MITOS |
De novo metazoan mitochondrial genome annotation. |
|
1 |
1 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
1 |
0 |
989 |
989 |
245668 |
245668 |
477 |
477 |
64235 |
64235 |
103 |
103 |
12954 |
12954 |
0 |
0 |
0 |
0 |
322857 |
322857 |
1569 |
1569 |
https://usegalaxy.eu/published/workflow?id=0de5fcc38ef1501d, https://usegalaxy.eu/published/workflow?id=2d0400b5d05c6c10 |
|
|
mlst |
mlst, mlst_list |
Scan contig files against PubMLST typing schemes |
2016-12-12 |
https://github.com/tseemann/mlst |
2.22.0 |
mlst |
2.23.0 |
To update |
Sequence Analysis |
Multilocus sequence typing |
Multilocus sequence typing |
Immunoproteins and antigens |
Immunoproteins and antigens |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/mlst |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/mlst |
mlst |
MLST |
Multi Locus Sequence Typing from an assembled genome or from a set of reads. |
|
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
1522 |
1585 |
20225 |
20983 |
1166 |
1166 |
8326 |
8326 |
1039 |
1270 |
10742 |
12950 |
18 |
18 |
82 |
82 |
42341 |
39375 |
4039 |
3745 |
https://usegalaxy.eu/published/workflow?id=2b888e200dfd91bc, https://usegalaxy.eu/published/workflow?id=309fc4fc2e0da89c, https://usegalaxy.eu/published/workflow?id=37da7b42cb063a3a, https://usegalaxy.eu/published/workflow?id=42c0da2e86318b37, https://usegalaxy.eu/published/workflow?id=49c46d7653d6c349, https://usegalaxy.eu/published/workflow?id=5826e573b6f93762, https://usegalaxy.eu/published/workflow?id=9219557de92e0203, https://usegalaxy.eu/published/workflow?id=a337bfb2eb1e583f, https://usegalaxy.eu/published/workflow?id=a84bac86ec183d46, https://usegalaxy.eu/published/workflow?id=eb5ab8bc82569eee, https://usegalaxy.eu/published/workflow?id=fde21b5f5c169114, https://usegalaxy.org.au/published/workflow?id=59618ed15510f531, https://usegalaxy.org.au/published/workflow?id=7a0c4804e4d4c905, https://usegalaxy.org.au/published/workflow?id=914330feb75ea9ab, https://usegalaxy.org.au/published/workflow?id=92fcdd490831c6c5, https://usegalaxy.org.au/published/workflow?id=c997a34b55425155, https://usegalaxy.org.au/published/workflow?id=e20172eb0f30d6cd, https://usegalaxy.org/published/workflow?id=675d70ee099dd3f2, https://usegalaxy.org/published/workflow?id=8111bb9bb26bb665, https://usegalaxy.org/published/workflow?id=c65bec6c332bf740, https://usegalaxy.org/published/workflow?id=fb01e1a49793c8be |
microbiome/pathogen-detection-from-nanopore-foodborne-data |
|
mmseqs2 |
mmseqs2_easy_linclust_clustering, mmseqs2_taxonomy_assignment |
MMseqs2 is an ultra fast and sensitive sequence search and clustering suite |
2025-03-27 |
https://github.com/soedinglab/MMseqs2 |
17-b804f |
mmseqs2 |
17.b804f |
To update |
Sequence Analysis, Metagenomics |
Sequence similarity search, Sequence alignment, Sequence clustering, Taxonomic classification |
Sequence similarity search, Sequence alignment, Sequence clustering, Taxonomic classification |
Metagenomics, Sequence analysis, Proteins, Nucleic acids, Gene and protein families, Taxonomy |
Metagenomics, Sequence analysis, Nucleic acids, Gene and protein families, Taxonomy |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/mmseqs2 |
MMseqs2 |
MMseqs2 |
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein and nucleotide sequence sets. MMseqs2 is open source GPL-licensed software implemented in C++ for Linux, MacOS, and (as beta version, via cygwin) Windows. The software is designed to run on multiple cores and servers and exhibits very good scalability. MMseqs2 can run 10000 times faster than BLAST. At 100 times its speed it achieves almost the same sensitivity. It can perform profile searches with the same sensitivity as PSI-BLAST at over 400 times its speed.MMseqs2 includes Linclust, the first clustering algorithm whose runtime scales linearly With Linclust we clustered 1.6 billion metagenomic sequence fragments in 10 h on a single server to 50% sequence identity. |
|
0 |
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
mmuphin |
mmuphin |
MMUPHin is an R package implementing meta-analysis methods for microbial community profiles |
2024-11-22 |
https://huttenhower.sph.harvard.edu/mmuphin |
1.16.0 |
bioconductor-mmuphin |
1.16.0 |
Up-to-date |
Metagenomics |
|
|
|
|
iuc |
https://github.com/biobakery/MMUPHin |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/mmuphin |
mmuphin |
mmuphin |
MMUPHin is an R package for meta-analysis tasks of microbiome cohorts. It has function interfaces for: a) covariate-controlled batch- and cohort effect adjustment, b) meta-analysis differential abundance testing, c) meta-analysis unsupervised discrete structure (clustering) discovery, and d) meta-analysis unsupervised continuous structure discovery. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
https://usegalaxy.eu/published/workflow?id=466bdd8ba7b67264 |
|
|
moabs |
moabs |
MOABS for differential methylation analysis on Bisulfite sequencing data. |
2019-07-28 |
https://github.com/sunnyisgalaxy/moabs |
1.3.4.6 |
moabs |
1.3.9.6 |
To update |
Epigenetics |
|
|
|
|
iuc |
https://github.com/sunnyisgalaxy/moabs |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/moabs |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
52 |
57 |
298 |
349 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
349 |
298 |
57 |
52 |
|
|
|
mosdepth |
mosdepth |
fast and flexible BAM/CRAM depth calculation |
2022-12-04 |
https://github.com/brentp/mosdepth |
0.3.11 |
mosdepth |
0.3.11 |
Up-to-date |
SAM |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/mosdepth |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/mosdepth |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
123 |
123 |
6665 |
6665 |
76 |
76 |
11721 |
11721 |
18 |
18 |
1793 |
1793 |
1 |
1 |
1500 |
1500 |
21679 |
21679 |
218 |
218 |
https://dev.workflowhub.eu/workflows/1069?version=2, https://usegalaxy.eu/published/workflow?id=2c79eee5ca5a3b09, https://usegalaxy.eu/published/workflow?id=30dc526dcfa500df, https://usegalaxy.org.au/published/workflow?id=aa1d123c0a0929f3, https://usegalaxy.org/published/workflow?id=0c6dbb2ef5eee5b9, https://usegalaxy.org/published/workflow?id=695d20ef3ee4cf1e, https://usegalaxy.org/published/workflow?id=779ea0b19d07a1bd, https://usegalaxy.org/published/workflow?id=e7ce46762faccaac, https://workflowhub.eu/workflows/1035?version=1, https://workflowhub.eu/workflows/1647?version=1 |
variant-analysis/tb-variant-analysis |
|
mothur |
mothur_align_check, mothur_align_seqs, mothur_amova, mothur_anosim, mothur_bin_seqs, mothur_biom_info, mothur_chimera_bellerophon, mothur_chimera_ccode, mothur_chimera_check, mothur_chimera_perseus, mothur_chimera_pintail, mothur_chimera_slayer, mothur_chimera_uchime, mothur_chimera_vsearch, mothur_chop_seqs, mothur_classify_otu, mothur_classify_seqs, mothur_classify_tree, mothur_clearcut, mothur_cluster_classic, mothur_cluster_fragments, mothur_cluster_split, mothur_cluster, mothur_collect_shared, mothur_collect_single, mothur_consensus_seqs, mothur_cooccurrence, mothur_corr_axes, mothur_count_groups, mothur_count_seqs, mothur_create_database, mothur_degap_seqs, mothur_deunique_seqs, mothur_deunique_tree, mothur_dist_seqs, mothur_dist_shared, mothur_fastq_info, mothur_filter_seqs, mothur_filter_shared, mothur_get_communitytype, mothur_get_coremicrobiome, mothur_get_dists, mothur_get_group, mothur_get_groups, mothur_get_label, mothur_get_lineage, mothur_get_mimarkspackage, mothur_get_otulabels, mothur_get_otulist, mothur_get_oturep, mothur_get_otus, mothur_get_rabund, mothur_get_relabund, mothur_get_sabund, mothur_get_seqs, mothur_get_sharedseqs, mothur_heatmap_bin, mothur_heatmap_sim, mothur_homova, mothur_indicator, mothur_lefse, mothur_libshuff, mothur_list_otulabels, mothur_list_seqs, mothur_make_biom, mothur_make_contigs, mothur_make_design, mothur_make_fastq, mothur_make_group, mothur_make_lefse, mothur_make_lookup, mothur_make_shared, mothur_make_sra, mothur_mantel, mothur_merge_count, mothur_merge_files, mothur_merge_groups, mothur_merge_sfffiles, mothur_merge_taxsummary, mothur_metastats, mothur_mimarks_attributes, mothur_nmds, mothur_normalize_shared, mothur_otu_association, mothur_otu_hierarchy, mothur_pairwise_seqs, mothur_parse_list, mothur_parsimony, mothur_pca, mothur_pcoa, mothur_pcr_seqs, mothur_phylo_diversity, mothur_phylotype, mothur_pre_cluster, mothur_primer_design, mothur_rarefaction_shared, mothur_rarefaction_single, mothur_remove_dists, mothur_remove_groups, mothur_remove_lineage, mothur_remove_otulabels, mothur_remove_otus, mothur_remove_rare, mothur_remove_seqs, mothur_rename_seqs, mothur_reverse_seqs, mothur_screen_seqs, mothur_sens_spec, mothur_seq_error, mothur_sffinfo, mothur_shhh_flows, mothur_shhh_seqs, mothur_sort_seqs, mothur_split_abund, mothur_split_groups, mothur_sub_sample, mothur_summary_qual, mothur_summary_seqs, mothur_summary_shared, mothur_summary_single, mothur_summary_tax, mothur_taxonomy_to_krona, mothur_tree_shared, mothur_trim_flows, mothur_trim_seqs, mothur_unifrac_unweighted, mothur_unifrac_weighted, mothur_unique_seqs, mothur_venn |
Mothur wrappers |
2016-06-24 |
https://www.mothur.org |
1.0 |
mothur |
1.48.3 |
To update |
Metagenomics |
DNA barcoding, Sequencing quality control, Sequence clustering, Taxonomic classification, Visualisation, Sequence read processing, Phylogenetic analysis |
DNA barcoding, Sequencing quality control, Sequence clustering, Taxonomic classification, Visualisation, Sequence read processing, Phylogenetic analysis |
Microbial ecology, Taxonomy, Sequence analysis, Phylogeny |
Microbial ecology, Taxonomy, Sequence analysis, Phylogeny |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/mothur |
mothur |
mothur |
Open-source, platform-independent, community-supported software for describing and comparing microbial communities |
|
129 |
129 |
129 |
129 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
129 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
126 |
129 |
129 |
0 |
2249 |
2591 |
295232 |
338504 |
4053 |
5204 |
517658 |
713565 |
1455 |
1632 |
168564 |
196553 |
139 |
139 |
14049 |
14049 |
1262671 |
995503 |
9566 |
7896 |
https://dev.workflowhub.eu/workflows/1060?version=1, https://dev.workflowhub.eu/workflows/1070?version=1, https://dev.workflowhub.eu/workflows/1101?version=1, https://dev.workflowhub.eu/workflows/1112?version=1, https://dev.workflowhub.eu/workflows/1117?version=1, https://dev.workflowhub.eu/workflows/1121?version=1, https://dev.workflowhub.eu/workflows/1125?version=1, https://dev.workflowhub.eu/workflows/1129?version=1, https://dev.workflowhub.eu/workflows/1133?version=1, https://dev.workflowhub.eu/workflows/1287?version=2, https://dev.workflowhub.eu/workflows/1292?version=2, https://usegalaxy.eu/published/workflow?id=565c989730f68362, https://usegalaxy.eu/published/workflow?id=6d06bd22f206e176, https://usegalaxy.eu/published/workflow?id=6efd80daabf518bf, https://usegalaxy.eu/published/workflow?id=7783eeebfa264bf5, https://usegalaxy.eu/published/workflow?id=83a0c1ba280785e6, https://usegalaxy.eu/published/workflow?id=8f747dbff3216993, https://usegalaxy.eu/published/workflow?id=b66e1d8171e6dac2, https://usegalaxy.eu/published/workflow?id=b86f24473a282ef9, https://usegalaxy.eu/published/workflow?id=b91a380ceaa0342b, https://usegalaxy.eu/published/workflow?id=c1e26abe61c69688, https://usegalaxy.eu/published/workflow?id=c55388a8fbfd7381, https://usegalaxy.eu/published/workflow?id=c67d2e75eeb4fd19, https://usegalaxy.eu/published/workflow?id=ce21961260fe4351, https://usegalaxy.eu/published/workflow?id=dadca1020f586338, https://usegalaxy.eu/published/workflow?id=e14b81a8c0b1b7a4, https://usegalaxy.eu/published/workflow?id=f21d6a40a10a8ae8, https://usegalaxy.fr/published/workflow?id=41264142d3c00016, https://usegalaxy.fr/published/workflow?id=8b1678200a1d157a, https://usegalaxy.org.au/published/workflow?id=177579096e009178, https://usegalaxy.org.au/published/workflow?id=1954437da1e0c4de, https://usegalaxy.org.au/published/workflow?id=2717e90438c7fb8c, https://usegalaxy.org.au/published/workflow?id=2a6324600f159061, https://usegalaxy.org.au/published/workflow?id=57fe85f947217994, https://usegalaxy.org.au/published/workflow?id=5877e2d5eba79f36, https://usegalaxy.org.au/published/workflow?id=58bd08b1530e7cae, https://usegalaxy.org.au/published/workflow?id=670e100ed3c039e2, https://usegalaxy.org.au/published/workflow?id=74bd939615090c2c, https://usegalaxy.org.au/published/workflow?id=7e381c150820e506, https://usegalaxy.org.au/published/workflow?id=832fe9dfc67fd8ed, https://usegalaxy.org.au/published/workflow?id=a52609119b30e64d, https://usegalaxy.org.au/published/workflow?id=fa8d1de86aa944a2, https://usegalaxy.org/published/workflow?id=2d149545a4920326, https://usegalaxy.org/published/workflow?id=4b7e73bb7ac93c95, https://usegalaxy.org/published/workflow?id=603e5c61c57bcf3f, https://usegalaxy.org/published/workflow?id=64fa13bb48fcd7df, https://usegalaxy.org/published/workflow?id=6a1eb7e7bececba1, https://usegalaxy.org/published/workflow?id=6f090b2c259847d2, https://usegalaxy.org/published/workflow?id=7251c6e0dad8f927, https://usegalaxy.org/published/workflow?id=775335812a6b7a61, https://usegalaxy.org/published/workflow?id=a383ce2e2bc3c7b9, https://usegalaxy.org/published/workflow?id=b2f3d7e4cd4d0f11, https://usegalaxy.org/published/workflow?id=bc01b8b203ecc754, https://usegalaxy.org/published/workflow?id=cade0c5c11978323, https://usegalaxy.org/published/workflow?id=d653eaefcf6b4697, https://usegalaxy.org/published/workflow?id=d7a11a4dfda3dab4, https://workflowhub.eu/workflows/1400?version=1, https://workflowhub.eu/workflows/1404?version=1, https://workflowhub.eu/workflows/1408?version=1, https://workflowhub.eu/workflows/1412?version=1, https://workflowhub.eu/workflows/1418?version=1, https://workflowhub.eu/workflows/1422?version=1, https://workflowhub.eu/workflows/1428?version=1, https://workflowhub.eu/workflows/1465?version=1, https://workflowhub.eu/workflows/1476?version=1, https://workflowhub.eu/workflows/1630?version=1, https://workflowhub.eu/workflows/1635?version=1, https://workflowhub.eu/workflows/648?version=1, https://workflowhub.eu/workflows/649?version=1, https://workflowhub.eu/workflows/650?version=1, https://workflowhub.eu/workflows/651?version=1, https://workflowhub.eu/workflows/652?version=1, https://workflowhub.eu/workflows/653?version=1 |
microbiome/general-tutorial, microbiome/mothur-miseq-sop, microbiome/mothur-miseq-sop-short, sequence-analysis/Manage_AB1_Sanger |
|
msaboot |
msaboot |
A multiple sequences alignment bootstrapping tool. |
2018-02-12 |
https://github.com/phac-nml/msaboot |
0.1.2 |
msaboot |
0.1.2 |
Up-to-date |
Fasta Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/msaboot |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/msaboot |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
100 |
112 |
936 |
1028 |
187 |
189 |
1138 |
1141 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2169 |
2074 |
301 |
287 |
|
|
|
multigps |
multigps |
Analyzes collections of multi-condition ChIP-seq data. |
2017-03-06 |
http://mahonylab.org/software/multigps/ |
0.74.0 |
fonts-conda-ecosystem |
|
To update |
ChIP-seq |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/multigps |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/multigps |
|
|
|
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
141 |
301 |
417 |
886 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
886 |
417 |
301 |
141 |
|
|
|
multigsea |
multigsea |
GSEA-based pathway enrichment analysis for multi-omics data |
2023-06-07 |
https://bioconductor.org/packages/devel/bioc/html/multiGSEA.html |
1.12.0 |
bioconductor-multigsea |
1.16.0 |
To update |
Transcriptomics, Proteomics, Statistics, Single Cell |
Gene-set enrichment analysis, Aggregation, Pathway analysis |
Gene-set enrichment analysis, Aggregation, Pathway analysis |
Metabolomics, Molecular interactions, pathways and networks, Proteomics, Transcriptomics, Small molecules |
Metabolomics, Molecular interactions, pathways and networks, Proteomics, Transcriptomics, Small molecules |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/multigsea |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/multigsea |
multiGSEA |
multiGSEA |
A GSEA-based pathway enrichment analysis for multi-omics data.multiGSEA: a GSEA-based pathway enrichment analysis for multi-omics data, BMC Bioinformatics 21, 561 (2020).Combining GSEA-based pathway enrichment with multi omics data integration. |
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
44 |
44 |
159 |
159 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
159 |
159 |
44 |
44 |
https://workflowhub.eu/workflows/1388?version=1 |
proteomics/multiGSEA-tutorial |
|
multiqc |
multiqc |
MultiQC aggregates results from bioinformatics analyses across many samples into a single report |
2017-09-21 |
http://multiqc.info/ |
1.27 |
multiqc |
1.30 |
To update |
Fastq Manipulation, Statistics, Visualization |
Validation, Sequencing quality control |
Sequencing quality control |
Sequencing, Bioinformatics, Sequence analysis, Genomics |
Sequencing, Bioinformatics, Sequence analysis, Genomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/multiqc |
multiqc |
MultiQC |
MultiQC aggregates results from multiple bioinformatics analyses across many samples into a single report. It searches a given directory for analysis logs and compiles a HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
21460 |
23158 |
198503 |
213450 |
29273 |
33600 |
182620 |
207522 |
6359 |
6694 |
44529 |
46563 |
1917 |
1918 |
30834 |
30918 |
498453 |
456486 |
65370 |
59009 |
https://dev.workflowhub.eu/workflows/1000?version=1, https://dev.workflowhub.eu/workflows/1001?version=1, https://dev.workflowhub.eu/workflows/1003?version=1, https://dev.workflowhub.eu/workflows/1064?version=1, https://dev.workflowhub.eu/workflows/1069?version=2, https://dev.workflowhub.eu/workflows/1074?version=2, https://dev.workflowhub.eu/workflows/1081?version=1, https://dev.workflowhub.eu/workflows/1087?version=2, https://dev.workflowhub.eu/workflows/1092?version=1, https://dev.workflowhub.eu/workflows/1114?version=1, https://dev.workflowhub.eu/workflows/1115?version=2, https://dev.workflowhub.eu/workflows/1118?version=1, https://dev.workflowhub.eu/workflows/1132?version=2, https://dev.workflowhub.eu/workflows/1161?version=2, https://dev.workflowhub.eu/workflows/1162?version=2, https://dev.workflowhub.eu/workflows/1179?version=2, https://dev.workflowhub.eu/workflows/1182?version=2, https://dev.workflowhub.eu/workflows/1192?version=2, https://dev.workflowhub.eu/workflows/1197?version=2, https://dev.workflowhub.eu/workflows/1250?version=2, https://dev.workflowhub.eu/workflows/1265?version=1, https://dev.workflowhub.eu/workflows/1269?version=1, https://dev.workflowhub.eu/workflows/1282?version=2, https://dev.workflowhub.eu/workflows/1295?version=1, https://dev.workflowhub.eu/workflows/1299?version=2, https://dev.workflowhub.eu/workflows/1306?version=2, https://dev.workflowhub.eu/workflows/1318?version=2, https://dev.workflowhub.eu/workflows/1324?version=3, https://dev.workflowhub.eu/workflows/1327?version=1, https://dev.workflowhub.eu/workflows/1329?version=5, https://dev.workflowhub.eu/workflows/132?version=1, https://dev.workflowhub.eu/workflows/143?version=1, https://dev.workflowhub.eu/workflows/144?version=1, https://dev.workflowhub.eu/workflows/145?version=1, https://dev.workflowhub.eu/workflows/146?version=1, https://dev.workflowhub.eu/workflows/195?version=2, https://dev.workflowhub.eu/workflows/196?version=2, https://dev.workflowhub.eu/workflows/197?version=2, https://dev.workflowhub.eu/workflows/198?version=2, https://dev.workflowhub.eu/workflows/38?version=1, https://dev.workflowhub.eu/workflows/574?version=1, https://usegalaxy.eu/published/workflow?id=002a51bdef00e14d, https://usegalaxy.eu/published/workflow?id=0189bab68f828d86, https://usegalaxy.eu/published/workflow?id=01fe4c590e608103, https://usegalaxy.eu/published/workflow?id=020f877513f2d0d1, https://usegalaxy.eu/published/workflow?id=023a0ee62dd1f593, https://usegalaxy.eu/published/workflow?id=03be9d62e8e4a129, https://usegalaxy.eu/published/workflow?id=03d1d2e0dc6e2024, https://usegalaxy.eu/published/workflow?id=04ed3f21de17aa1d, https://usegalaxy.eu/published/workflow?id=0563f58718be932d, https://usegalaxy.eu/published/workflow?id=0599f049e4697839, https://usegalaxy.eu/published/workflow?id=0609a4b1941d1a68, https://usegalaxy.eu/published/workflow?id=079e2a968d8e6176, https://usegalaxy.eu/published/workflow?id=07b74e4cf53cb633, https://usegalaxy.eu/published/workflow?id=085c3a4c89d137b5, https://usegalaxy.eu/published/workflow?id=089e5e83b1de0511, https://usegalaxy.eu/published/workflow?id=08eb5e55109c4d9c, https://usegalaxy.eu/published/workflow?id=096b75501c8e0888, https://usegalaxy.eu/published/workflow?id=0ab3e47ebd3b520e, https://usegalaxy.eu/published/workflow?id=0ae360bfbb3b2494, https://usegalaxy.eu/published/workflow?id=0be293debca8fb9b, https://usegalaxy.eu/published/workflow?id=0c619b25c1394a09, https://usegalaxy.eu/published/workflow?id=0e5b701ed5ca69a7, https://usegalaxy.eu/published/workflow?id=0eb137cd936bbfe0, https://usegalaxy.eu/published/workflow?id=0ec684b341ad172d, https://usegalaxy.eu/published/workflow?id=0f563f176bb245af, https://usegalaxy.eu/published/workflow?id=0f6a7bd5362e4a2b, https://usegalaxy.eu/published/workflow?id=0fa523529c4f73cf, https://usegalaxy.eu/published/workflow?id=0fb12e3a127fc4be, https://usegalaxy.eu/published/workflow?id=1089e5c66dbcc1a3, https://usegalaxy.eu/published/workflow?id=111527fe542846af, https://usegalaxy.eu/published/workflow?id=112422839b68db02, https://usegalaxy.eu/published/workflow?id=1151052f4393852a, https://usegalaxy.eu/published/workflow?id=117177b0c231dc55, https://usegalaxy.eu/published/workflow?id=133b299125ff9905, https://usegalaxy.eu/published/workflow?id=146cef3acb2eba75, https://usegalaxy.eu/published/workflow?id=1483534f49b826bf, https://usegalaxy.eu/published/workflow?id=14b9753269cd368f, https://usegalaxy.eu/published/workflow?id=1502fd3fa90d32d8, https://usegalaxy.eu/published/workflow?id=1524b189069b42a5, https://usegalaxy.eu/published/workflow?id=153ba1581743d31f, https://usegalaxy.eu/published/workflow?id=16080c3c1488a8b5, https://usegalaxy.eu/published/workflow?id=166eb3f14feffa1b, https://usegalaxy.eu/published/workflow?id=1761092d0e7deece, https://usegalaxy.eu/published/workflow?id=17ad465d9515cd25, https://usegalaxy.eu/published/workflow?id=1860e02bcb894a64, https://usegalaxy.eu/published/workflow?id=194a05d42687b524, https://usegalaxy.eu/published/workflow?id=1ac0a15758277730, https://usegalaxy.eu/published/workflow?id=1b49eda539658e53, https://usegalaxy.eu/published/workflow?id=1bb084f1bc102734, https://usegalaxy.eu/published/workflow?id=1c267e93aa8015e6, https://usegalaxy.eu/published/workflow?id=1c3e7b3af6ff79fa, https://usegalaxy.eu/published/workflow?id=1c44bbaa5f4f8b54, https://usegalaxy.eu/published/workflow?id=1c5588d6ac7f773f, https://usegalaxy.eu/published/workflow?id=1da7ac8eaf891f39, https://usegalaxy.eu/published/workflow?id=1dba8278fb2786fb, https://usegalaxy.eu/published/workflow?id=1e02a7292e9974b1, https://usegalaxy.eu/published/workflow?id=1e5f1d9a51032e44, https://usegalaxy.eu/published/workflow?id=1eac2ebffcbb8d59, https://usegalaxy.eu/published/workflow?id=1ee43d90b69829e9, https://usegalaxy.eu/published/workflow?id=1ef76b7b86e15792, https://usegalaxy.eu/published/workflow?id=1f2a1438e41188f2, https://usegalaxy.eu/published/workflow?id=1f9a9a7998ef5ab3, https://usegalaxy.eu/published/workflow?id=1fe02012c96b731f, https://usegalaxy.eu/published/workflow?id=20ada53472782c9b, https://usegalaxy.eu/published/workflow?id=21a3f72851f29925, https://usegalaxy.eu/published/workflow?id=220961d803697f54, https://usegalaxy.eu/published/workflow?id=23821870734575e9, https://usegalaxy.eu/published/workflow?id=249c5d6698c8b98c, https://usegalaxy.eu/published/workflow?id=24ddd188da35b061, https://usegalaxy.eu/published/workflow?id=24eaa682897379c8, https://usegalaxy.eu/published/workflow?id=250e6058f160825f, https://usegalaxy.eu/published/workflow?id=2573209308aaad23, https://usegalaxy.eu/published/workflow?id=25aa944237d7fb82, https://usegalaxy.eu/published/workflow?id=26185e8fa5a9b988, https://usegalaxy.eu/published/workflow?id=2671a5f85b2cccfe, https://usegalaxy.eu/published/workflow?id=270b6f82efab28b2, https://usegalaxy.eu/published/workflow?id=29a855d928337f8f, https://usegalaxy.eu/published/workflow?id=2a33d4fcb806e942, https://usegalaxy.eu/published/workflow?id=2a39dbc8fc6dd5d3, https://usegalaxy.eu/published/workflow?id=2aede5c6577b28f5, https://usegalaxy.eu/published/workflow?id=2b25eaebd3987612, https://usegalaxy.eu/published/workflow?id=2c3d05023c02113e, https://usegalaxy.eu/published/workflow?id=2c5cae1389c11881, https://usegalaxy.eu/published/workflow?id=2c79eee5ca5a3b09, https://usegalaxy.eu/published/workflow?id=2cf9f0e2ab5a7f8b, https://usegalaxy.eu/published/workflow?id=2d08a73dd8ff99e9, https://usegalaxy.eu/published/workflow?id=2d2d0c2231babc50, https://usegalaxy.eu/published/workflow?id=2d9d4445a1871230, https://usegalaxy.eu/published/workflow?id=2e0075791f7fa384, https://usegalaxy.eu/published/workflow?id=2e418c5810012e5a, https://usegalaxy.eu/published/workflow?id=2e6561d8dadc9e17, https://usegalaxy.eu/published/workflow?id=2f094f5e1f391529, https://usegalaxy.eu/published/workflow?id=2f51a82838722bec, https://usegalaxy.eu/published/workflow?id=2fd462d85412444c, https://usegalaxy.eu/published/workflow?id=300301c23327f797, https://usegalaxy.eu/published/workflow?id=309fc4fc2e0da89c, https://usegalaxy.eu/published/workflow?id=30e7dc81e323cbdb, https://usegalaxy.eu/published/workflow?id=3183c2abca463bb4, https://usegalaxy.eu/published/workflow?id=31d9eb6a120411d6, https://usegalaxy.eu/published/workflow?id=326d4102190b74fc, https://usegalaxy.eu/published/workflow?id=3403d5a8a71e0c3c, https://usegalaxy.eu/published/workflow?id=342a5df69951e3d7, https://usegalaxy.eu/published/workflow?id=344cd3a3c2ce5302, https://usegalaxy.eu/published/workflow?id=350d7e6976e15d30, https://usegalaxy.eu/published/workflow?id=3550384e7c062a60, https://usegalaxy.eu/published/workflow?id=374797e58377c40f, https://usegalaxy.eu/published/workflow?id=379642036b6f5a66, https://usegalaxy.eu/published/workflow?id=37da7b42cb063a3a, https://usegalaxy.eu/published/workflow?id=39b195a36408277c, https://usegalaxy.eu/published/workflow?id=3a3e2d50fe7a9ee3, https://usegalaxy.eu/published/workflow?id=3b8ef7905c902b27, https://usegalaxy.eu/published/workflow?id=3ce75b5de4922cba, https://usegalaxy.eu/published/workflow?id=3d0039098a87642c, https://usegalaxy.eu/published/workflow?id=3e255a5b7026d26e, https://usegalaxy.eu/published/workflow?id=3eb6663a66f8e69a, https://usegalaxy.eu/published/workflow?id=3f5414bb38b47fcf, https://usegalaxy.eu/published/workflow?id=3f6c7249ef71ae41, https://usegalaxy.eu/published/workflow?id=3ff4dbcc7a602e6b, https://usegalaxy.eu/published/workflow?id=406e6ef0dfb38628, https://usegalaxy.eu/published/workflow?id=409336bf210033a2, https://usegalaxy.eu/published/workflow?id=416141b245073406, https://usegalaxy.eu/published/workflow?id=4176b9d43325a8d8, https://usegalaxy.eu/published/workflow?id=429ae28a178cd07c, https://usegalaxy.eu/published/workflow?id=42c0da2e86318b37, https://usegalaxy.eu/published/workflow?id=44a2b6c8ae54eb31, https://usegalaxy.eu/published/workflow?id=44c5999436da5f1e, https://usegalaxy.eu/published/workflow?id=4566262dd0acc8ab, https://usegalaxy.eu/published/workflow?id=45c5e0a1e10edc54, https://usegalaxy.eu/published/workflow?id=45f63151bf4f1a49, https://usegalaxy.eu/published/workflow?id=461d71caea871db8, https://usegalaxy.eu/published/workflow?id=466bdd8ba7b67264, https://usegalaxy.eu/published/workflow?id=475ea16f943cc013, https://usegalaxy.eu/published/workflow?id=476db04368d5e90c, https://usegalaxy.eu/published/workflow?id=478190607a114390, https://usegalaxy.eu/published/workflow?id=47a0407867a90f95, https://usegalaxy.eu/published/workflow?id=48071c1720b2fd8d, https://usegalaxy.eu/published/workflow?id=4856e3522b2ee059, https://usegalaxy.eu/published/workflow?id=48f63ef14a12f306, https://usegalaxy.eu/published/workflow?id=49073a24429d93d6, https://usegalaxy.eu/published/workflow?id=497b82d3b92dc076, https://usegalaxy.eu/published/workflow?id=49ce9e738fadef4a, https://usegalaxy.eu/published/workflow?id=4a51e616d96338ed, https://usegalaxy.eu/published/workflow?id=4a764275d4bf9f31, https://usegalaxy.eu/published/workflow?id=4b4bfc79205d83f1, https://usegalaxy.eu/published/workflow?id=4c3a9b574f37eebb, https://usegalaxy.eu/published/workflow?id=4c75ab0be3c56494, https://usegalaxy.eu/published/workflow?id=4cb25c0bb103f54f, https://usegalaxy.eu/published/workflow?id=4d32b1b3ac0a7161, https://usegalaxy.eu/published/workflow?id=4d41ee83fc0040d4, https://usegalaxy.eu/published/workflow?id=4d97068a725c975c, https://usegalaxy.eu/published/workflow?id=4daa0c33d6d50379, https://usegalaxy.eu/published/workflow?id=4f245ac304ab76d9, https://usegalaxy.eu/published/workflow?id=4f62794453f65cba, https://usegalaxy.eu/published/workflow?id=503a2f4caacaf63e, https://usegalaxy.eu/published/workflow?id=510bcef37f385495, https://usegalaxy.eu/published/workflow?id=5115299e77df8104, https://usegalaxy.eu/published/workflow?id=5138874b208adb4b, https://usegalaxy.eu/published/workflow?id=519e0ffdfd1790bc, https://usegalaxy.eu/published/workflow?id=5279af5c95ae4f7a, https://usegalaxy.eu/published/workflow?id=529f30e894beacc2, https://usegalaxy.eu/published/workflow?id=52bdf400f97c5770, https://usegalaxy.eu/published/workflow?id=535f777e5e42e98c, https://usegalaxy.eu/published/workflow?id=5385abe9c2589b69, https://usegalaxy.eu/published/workflow?id=53de0e742573e588, https://usegalaxy.eu/published/workflow?id=54467870b7c635f2, https://usegalaxy.eu/published/workflow?id=54590ccd11ffbf65, https://usegalaxy.eu/published/workflow?id=54b91dd86f463391, https://usegalaxy.eu/published/workflow?id=55a9fc5d30392777, https://usegalaxy.eu/published/workflow?id=55ead91471bf1008, https://usegalaxy.eu/published/workflow?id=56edd22d14392691, https://usegalaxy.eu/published/workflow?id=57769c948e14f9ac, https://usegalaxy.eu/published/workflow?id=579dd1e95e76402f, https://usegalaxy.eu/published/workflow?id=579ff83177c5ee09, https://usegalaxy.eu/published/workflow?id=57cc33ed64d71982, https://usegalaxy.eu/published/workflow?id=57d3109f32defa3b, https://usegalaxy.eu/published/workflow?id=587e4d5ce25f48da, https://usegalaxy.eu/published/workflow?id=59b274da8df01ead, https://usegalaxy.eu/published/workflow?id=5aba0f20d994b1a4, https://usegalaxy.eu/published/workflow?id=5ad406442ec21345, https://usegalaxy.eu/published/workflow?id=5be158931abca947, https://usegalaxy.eu/published/workflow?id=5c15f251642bfa1f, https://usegalaxy.eu/published/workflow?id=5c8186f1e342c522, https://usegalaxy.eu/published/workflow?id=5cc732a6b4338bf5, https://usegalaxy.eu/published/workflow?id=5e1906290f5b4d8a, https://usegalaxy.eu/published/workflow?id=5ed38d8114bcd6f7, https://usegalaxy.eu/published/workflow?id=5f0faac42b0a5062, https://usegalaxy.eu/published/workflow?id=614807d57979554c, https://usegalaxy.eu/published/workflow?id=628062a8cf93261f, https://usegalaxy.eu/published/workflow?id=629e57958afed44c, https://usegalaxy.eu/published/workflow?id=63478edcea3f449a, https://usegalaxy.eu/published/workflow?id=63749bd3045ccd4a, https://usegalaxy.eu/published/workflow?id=63964ba7d9edce74, https://usegalaxy.eu/published/workflow?id=63eed9c2e025a723, https://usegalaxy.eu/published/workflow?id=6514e610c79df72c, https://usegalaxy.eu/published/workflow?id=6573f3b1606b7f09, https://usegalaxy.eu/published/workflow?id=66f2a58637054c16, https://usegalaxy.eu/published/workflow?id=67be21795d403ca3, https://usegalaxy.eu/published/workflow?id=68e8042f11d5a3fd, https://usegalaxy.eu/published/workflow?id=69cdd404592535ec, https://usegalaxy.eu/published/workflow?id=6a5c39c1d38a10c2, https://usegalaxy.eu/published/workflow?id=6a6e2c2335051fb5, https://usegalaxy.eu/published/workflow?id=6bce1d419a179c50, https://usegalaxy.eu/published/workflow?id=6be946c7ec91835e, https://usegalaxy.eu/published/workflow?id=6dbac47941a804da, https://usegalaxy.eu/published/workflow?id=6dbc84168feea337, https://usegalaxy.eu/published/workflow?id=6e1fe7372e93fae0, https://usegalaxy.eu/published/workflow?id=6ebd09100fc98878, https://usegalaxy.eu/published/workflow?id=6ed1016dfdf9f928, https://usegalaxy.eu/published/workflow?id=71a6d128a09210f0, https://usegalaxy.eu/published/workflow?id=71c4ec4805f83cd5, https://usegalaxy.eu/published/workflow?id=72e3e5fdc766e24a, https://usegalaxy.eu/published/workflow?id=733650962d379da2, https://usegalaxy.eu/published/workflow?id=7337d15d121596da, https://usegalaxy.eu/published/workflow?id=74e4a8f2edb25f1a, https://usegalaxy.eu/published/workflow?id=74f19aff1b9cdd6b, https://usegalaxy.eu/published/workflow?id=7582a48054c44d6e, https://usegalaxy.eu/published/workflow?id=75e88603745e069e, https://usegalaxy.eu/published/workflow?id=76e9cd837ea5e7da, https://usegalaxy.eu/published/workflow?id=77d2adf5249eb826, https://usegalaxy.eu/published/workflow?id=79b5afb125e3c3da, https://usegalaxy.eu/published/workflow?id=79fd2517af48c594, https://usegalaxy.eu/published/workflow?id=7aa32aba3fde0708, https://usegalaxy.eu/published/workflow?id=7b7ef222ac4f9887, https://usegalaxy.eu/published/workflow?id=7bdd9ad918edab0b, https://usegalaxy.eu/published/workflow?id=7cc253b53379b727, https://usegalaxy.eu/published/workflow?id=7d44ea091d437edf, https://usegalaxy.eu/published/workflow?id=7e0ba4c14803448e, https://usegalaxy.eu/published/workflow?id=7ea91d562a02eb2f, https://usegalaxy.eu/published/workflow?id=7ecd92cb382d8168, https://usegalaxy.eu/published/workflow?id=7ef7b460143211df, https://usegalaxy.eu/published/workflow?id=81122d30c64a52a6, https://usegalaxy.eu/published/workflow?id=8132c3b710fd6d48, https://usegalaxy.eu/published/workflow?id=82ef590b5821805d, https://usegalaxy.eu/published/workflow?id=83049910e2cd5128, https://usegalaxy.eu/published/workflow?id=830eb4faff21eb0c, https://usegalaxy.eu/published/workflow?id=847403b72dd346ff, https://usegalaxy.eu/published/workflow?id=86e2e2faa2e0bd46, https://usegalaxy.eu/published/workflow?id=873e6ac4699ed7f6, https://usegalaxy.eu/published/workflow?id=87cc0cd143a12c41, https://usegalaxy.eu/published/workflow?id=87fea062a9646a31, https://usegalaxy.eu/published/workflow?id=88064e2231165fd2, https://usegalaxy.eu/published/workflow?id=889f2782ad82bd69, https://usegalaxy.eu/published/workflow?id=895b8f5736bb92bb, https://usegalaxy.eu/published/workflow?id=8be366ad6a42408b, https://usegalaxy.eu/published/workflow?id=8c4331f1bac67aba, https://usegalaxy.eu/published/workflow?id=8f3ce55d44d9f369, https://usegalaxy.eu/published/workflow?id=8f415b0c409f56f7, https://usegalaxy.eu/published/workflow?id=8f9dc5ba61a02815, https://usegalaxy.eu/published/workflow?id=8fb156020285e049, https://usegalaxy.eu/published/workflow?id=8ff9d3ad20e87819, https://usegalaxy.eu/published/workflow?id=90a32c95b60f5221, https://usegalaxy.eu/published/workflow?id=91d4aabba7ad40c8, https://usegalaxy.eu/published/workflow?id=9219557de92e0203, https://usegalaxy.eu/published/workflow?id=92760fc19ef120ce, https://usegalaxy.eu/published/workflow?id=927d24dcde139b9c, https://usegalaxy.eu/published/workflow?id=92dafb3d1c06e074, https://usegalaxy.eu/published/workflow?id=93a7047396080fda, https://usegalaxy.eu/published/workflow?id=9472be79da012999, https://usegalaxy.eu/published/workflow?id=94b9287365ea4d0d, https://usegalaxy.eu/published/workflow?id=94bbf8fa7c1f030d, https://usegalaxy.eu/published/workflow?id=94c3d329c31c712f, https://usegalaxy.eu/published/workflow?id=95cb04ffb473623b, https://usegalaxy.eu/published/workflow?id=95f420d8856bf725, https://usegalaxy.eu/published/workflow?id=96c61a584cb2e5e9, https://usegalaxy.eu/published/workflow?id=985044b4b2c51425, https://usegalaxy.eu/published/workflow?id=9a1d17c12b139bda, https://usegalaxy.eu/published/workflow?id=9a60ecf98d4f8134, https://usegalaxy.eu/published/workflow?id=9ad5aff92e185907, https://usegalaxy.eu/published/workflow?id=9b025479fade745d, https://usegalaxy.eu/published/workflow?id=9b9e1e28f3683f92, https://usegalaxy.eu/published/workflow?id=9c0b67496dfe52b2, https://usegalaxy.eu/published/workflow?id=9c24df68dc7d25a4, https://usegalaxy.eu/published/workflow?id=9c7a218993788493, https://usegalaxy.eu/published/workflow?id=9da26c5131603b9f, https://usegalaxy.eu/published/workflow?id=9e31c51911987687, https://usegalaxy.eu/published/workflow?id=9e4df2893767591a, https://usegalaxy.eu/published/workflow?id=9eda857e4141d56e, https://usegalaxy.eu/published/workflow?id=9f2d18f0d0896e8b, https://usegalaxy.eu/published/workflow?id=9fddc44294236e8f, https://usegalaxy.eu/published/workflow?id=9feebfc6c34da287, https://usegalaxy.eu/published/workflow?id=a1e09c648d8f1fc7, https://usegalaxy.eu/published/workflow?id=a28c207730e7e13d, https://usegalaxy.eu/published/workflow?id=a31100610fba17a1, https://usegalaxy.eu/published/workflow?id=a35e0c2fcba4e95f, https://usegalaxy.eu/published/workflow?id=a3cb75fd31ba0689, https://usegalaxy.eu/published/workflow?id=a3da32b6b45da639, https://usegalaxy.eu/published/workflow?id=a461ea397418f3aa, https://usegalaxy.eu/published/workflow?id=a4e3667f6879bfaf, https://usegalaxy.eu/published/workflow?id=a639ea0419de1078, https://usegalaxy.eu/published/workflow?id=a6f4371ef9bc1aab, https://usegalaxy.eu/published/workflow?id=a705370bc2c13d5c, https://usegalaxy.eu/published/workflow?id=a76629eccfdeafb8, https://usegalaxy.eu/published/workflow?id=a8f829deb69b30ab, https://usegalaxy.eu/published/workflow?id=a9e1a6b90dbd2518, https://usegalaxy.eu/published/workflow?id=aa6dc57f5c67fb4b, https://usegalaxy.eu/published/workflow?id=ab6e6ffaaebab45b, https://usegalaxy.eu/published/workflow?id=ac6eb99f70d35999, https://usegalaxy.eu/published/workflow?id=ada52ba09b462567, https://usegalaxy.eu/published/workflow?id=ae16643c04ad1216, https://usegalaxy.eu/published/workflow?id=ae74f60cd20d56bc, https://usegalaxy.eu/published/workflow?id=af30010868c97316, https://usegalaxy.eu/published/workflow?id=af472984b3f3d65f, https://usegalaxy.eu/published/workflow?id=aff44f1665a14e23, https://usegalaxy.eu/published/workflow?id=b02d90c32dc67730, https://usegalaxy.eu/published/workflow?id=b1d1694b95ed10e1, https://usegalaxy.eu/published/workflow?id=b30c294a094c90bc, https://usegalaxy.eu/published/workflow?id=b323867a9efcc6c6, https://usegalaxy.eu/published/workflow?id=b426e137396acb14, https://usegalaxy.eu/published/workflow?id=b4948afacccfefdb, https://usegalaxy.eu/published/workflow?id=b57c3522bdd7c2d5, https://usegalaxy.eu/published/workflow?id=b5e3360f933d1950, https://usegalaxy.eu/published/workflow?id=b5ffba506152b1a1, https://usegalaxy.eu/published/workflow?id=b619339f4e1c6fdf, https://usegalaxy.eu/published/workflow?id=b77e3b08092fa73e, https://usegalaxy.eu/published/workflow?id=b7a3cbcd32734e8b, https://usegalaxy.eu/published/workflow?id=b7c2440621968526, https://usegalaxy.eu/published/workflow?id=b84fd6a0e2632ad9, https://usegalaxy.eu/published/workflow?id=b8baade87e733fce, https://usegalaxy.eu/published/workflow?id=b97532c398b821a2, https://usegalaxy.eu/published/workflow?id=b9ad204395f7d931, https://usegalaxy.eu/published/workflow?id=bace9aebab9d4ce3, https://usegalaxy.eu/published/workflow?id=bb604ff5e010e7ab, https://usegalaxy.eu/published/workflow?id=bc87309a8763d0b4, https://usegalaxy.eu/published/workflow?id=bcf99cc0469db276, https://usegalaxy.eu/published/workflow?id=be3d1d7d4afd96b1, https://usegalaxy.eu/published/workflow?id=bef0a7d604f2ebef, https://usegalaxy.eu/published/workflow?id=c084c2009f6b2d0a, https://usegalaxy.eu/published/workflow?id=c0d1e965daf89006, https://usegalaxy.eu/published/workflow?id=c2af7a5dbfb5b023, https://usegalaxy.eu/published/workflow?id=c2d814f2182c0082, https://usegalaxy.eu/published/workflow?id=c2f0decb06f0bb90, https://usegalaxy.eu/published/workflow?id=c38e3ac59d8b86d6, https://usegalaxy.eu/published/workflow?id=c3eba26c5d7febff, https://usegalaxy.eu/published/workflow?id=c4c2e669b86cffbc, https://usegalaxy.eu/published/workflow?id=c4fa05e209a2f082, https://usegalaxy.eu/published/workflow?id=c508c00e81018dd8, https://usegalaxy.eu/published/workflow?id=c5e6047b3b256b06, https://usegalaxy.eu/published/workflow?id=c6b22fc33b569c8f, https://usegalaxy.eu/published/workflow?id=c6ca9e6fd28979f8, https://usegalaxy.eu/published/workflow?id=c7a8f7aabc219831, https://usegalaxy.eu/published/workflow?id=c7f34c67c9054234, https://usegalaxy.eu/published/workflow?id=c98a14fcf5998159, https://usegalaxy.eu/published/workflow?id=c9aff55e39e195e3, https://usegalaxy.eu/published/workflow?id=ca9d3233b0912765, https://usegalaxy.eu/published/workflow?id=caba6d3d7db648e9, https://usegalaxy.eu/published/workflow?id=cae527ce845e770e, https://usegalaxy.eu/published/workflow?id=cc37667c2d1f9056, https://usegalaxy.eu/published/workflow?id=ccef778cfd9024d1, https://usegalaxy.eu/published/workflow?id=cd926dd6b70e72d6, https://usegalaxy.eu/published/workflow?id=cfe47f0c78ed5ec4, https://usegalaxy.eu/published/workflow?id=d05c6f0f3205fbd2, https://usegalaxy.eu/published/workflow?id=d086340422009ba9, https://usegalaxy.eu/published/workflow?id=d12617d0df5f81d0, https://usegalaxy.eu/published/workflow?id=d1338e2b4002a364, https://usegalaxy.eu/published/workflow?id=d3494c6124f820b2, https://usegalaxy.eu/published/workflow?id=d3dfe7ba11508c72, https://usegalaxy.eu/published/workflow?id=d3edc3f0659a5e5b, https://usegalaxy.eu/published/workflow?id=d649ec485c4b3994, https://usegalaxy.eu/published/workflow?id=d6809603f46de1b3, https://usegalaxy.eu/published/workflow?id=d6ff6be33b8bfe85, https://usegalaxy.eu/published/workflow?id=d768c0e0df4d432e, https://usegalaxy.eu/published/workflow?id=d83280cd72ec0f33, https://usegalaxy.eu/published/workflow?id=d88145e7475e0b7b, https://usegalaxy.eu/published/workflow?id=d9f8c5d575da02b1, https://usegalaxy.eu/published/workflow?id=da19c0eaa757fa39, https://usegalaxy.eu/published/workflow?id=db03a18167f26399, https://usegalaxy.eu/published/workflow?id=db10c092fad70d69, https://usegalaxy.eu/published/workflow?id=dbcf7af09e036754, https://usegalaxy.eu/published/workflow?id=dc27453c438577f6, https://usegalaxy.eu/published/workflow?id=dd3193aaaf08e798, https://usegalaxy.eu/published/workflow?id=ddd604341afd9cf7, https://usegalaxy.eu/published/workflow?id=de3eafbcf42c75bb, https://usegalaxy.eu/published/workflow?id=de9003e589631029, https://usegalaxy.eu/published/workflow?id=de9cf573314f416c, https://usegalaxy.eu/published/workflow?id=deec04097a871646, https://usegalaxy.eu/published/workflow?id=df3bf1700d3faefc, https://usegalaxy.eu/published/workflow?id=dfc2c53ac3103eff, https://usegalaxy.eu/published/workflow?id=e138640778b7414c, https://usegalaxy.eu/published/workflow?id=e6c5fb1d37d29ec0, https://usegalaxy.eu/published/workflow?id=e7aebe58411d97ed, https://usegalaxy.eu/published/workflow?id=e85c9385870aadcc, https://usegalaxy.eu/published/workflow?id=e8f9e1d911683b22, https://usegalaxy.eu/published/workflow?id=e935d2c8ffb52588, https://usegalaxy.eu/published/workflow?id=ea8bb8eefdb4ba7a, https://usegalaxy.eu/published/workflow?id=ead0f264798f9418, https://usegalaxy.eu/published/workflow?id=eb3cfa4d1f05fc0e, https://usegalaxy.eu/published/workflow?id=ebbf5cfa946d11d3, https://usegalaxy.eu/published/workflow?id=ec79f14ab91cd933, https://usegalaxy.eu/published/workflow?id=ecf48fa50af560a0, https://usegalaxy.eu/published/workflow?id=ed20bd120064bab0, https://usegalaxy.eu/published/workflow?id=ee6dc47660540ba6, https://usegalaxy.eu/published/workflow?id=ef1d11b79a2e1727, https://usegalaxy.eu/published/workflow?id=f14ebad1c3c20067, https://usegalaxy.eu/published/workflow?id=f1ca4289ee4f67bb, https://usegalaxy.eu/published/workflow?id=f33b5135ee99e0dc, https://usegalaxy.eu/published/workflow?id=f38745208494d4ab, https://usegalaxy.eu/published/workflow?id=f5005e80d9ffa109, https://usegalaxy.eu/published/workflow?id=f54b4d76f7f9a589, https://usegalaxy.eu/published/workflow?id=f578a097b4339025, https://usegalaxy.eu/published/workflow?id=f63127675a07e00a, https://usegalaxy.eu/published/workflow?id=f6a625946dea60fa, https://usegalaxy.eu/published/workflow?id=f6b55599db1ab056, https://usegalaxy.eu/published/workflow?id=f6e8a63283262518, https://usegalaxy.eu/published/workflow?id=f841e1207611f28f, https://usegalaxy.eu/published/workflow?id=f97e6fe1fcbc53a7, https://usegalaxy.eu/published/workflow?id=f9b705e53b6d6539, https://usegalaxy.eu/published/workflow?id=fa0ff9a0db8bbddb, https://usegalaxy.eu/published/workflow?id=fa53b172def3fe75, https://usegalaxy.eu/published/workflow?id=fa960b78dfc0c2f8, https://usegalaxy.eu/published/workflow?id=fb015e398373ea8a, https://usegalaxy.eu/published/workflow?id=fc216dfb0ec9ed41, https://usegalaxy.eu/published/workflow?id=fc25c1f8c6667c87, https://usegalaxy.eu/published/workflow?id=fcf745185d6e0ea4, https://usegalaxy.eu/published/workflow?id=fd61d070d9744f95, https://usegalaxy.eu/published/workflow?id=fd6429a788660c8d, https://usegalaxy.eu/published/workflow?id=fd649ac4d4872c81, https://usegalaxy.eu/published/workflow?id=fdca6c9d394986bf, https://usegalaxy.eu/published/workflow?id=fde21b5f5c169114, https://usegalaxy.eu/published/workflow?id=ff2fd4a4bb27d859, https://usegalaxy.fr/published/workflow?id=2345fad7dac13daa, https://usegalaxy.fr/published/workflow?id=54b48eeeed3564dd, https://usegalaxy.fr/published/workflow?id=57b5a45c9f71a09c, https://usegalaxy.fr/published/workflow?id=591c57173e259ca6, https://usegalaxy.fr/published/workflow?id=5d83e0886f2a7465, https://usegalaxy.fr/published/workflow?id=61235264d5d2f666, https://usegalaxy.fr/published/workflow?id=727cfdb7c79287d1, https://usegalaxy.fr/published/workflow?id=776ef2fa51094ba6, https://usegalaxy.fr/published/workflow?id=7d27dd394b921846, https://usegalaxy.fr/published/workflow?id=826cffb2458e4067, https://usegalaxy.fr/published/workflow?id=98529cff0ef36b91, https://usegalaxy.fr/published/workflow?id=aa96487c5a1b29bf, https://usegalaxy.fr/published/workflow?id=bffee40c87c7b20a, https://usegalaxy.fr/published/workflow?id=c4f6062e51d0f45e, https://usegalaxy.fr/published/workflow?id=ca0bd0e42cb774f9, https://usegalaxy.fr/published/workflow?id=d0d12c0b80c286f9, https://usegalaxy.fr/published/workflow?id=e0b225d4b2556365, https://usegalaxy.fr/published/workflow?id=e3c04a30258421aa, https://usegalaxy.fr/published/workflow?id=e6991d64e851b09e, https://usegalaxy.org.au/published/workflow?id=000cdc969e9f0886, https://usegalaxy.org.au/published/workflow?id=01997cb92a2ce2d5, https://usegalaxy.org.au/published/workflow?id=0220e60c66de9065, https://usegalaxy.org.au/published/workflow?id=02b8d033d9b1fa05, https://usegalaxy.org.au/published/workflow?id=02eebe3d909206ab, https://usegalaxy.org.au/published/workflow?id=0458ecd2761307d1, https://usegalaxy.org.au/published/workflow?id=046a1c600a6b77c2, https://usegalaxy.org.au/published/workflow?id=05950987aa2eba5b, https://usegalaxy.org.au/published/workflow?id=05b17b9d70c1db8b, https://usegalaxy.org.au/published/workflow?id=0614f24ebeb680de, https://usegalaxy.org.au/published/workflow?id=068f85b8b137bfd7, https://usegalaxy.org.au/published/workflow?id=06ba34da322f46f1, https://usegalaxy.org.au/published/workflow?id=07c97b9e59c0218f, https://usegalaxy.org.au/published/workflow?id=08fac3b4c128e597, https://usegalaxy.org.au/published/workflow?id=094a545d44ce28cc, https://usegalaxy.org.au/published/workflow?id=0a477899db53d098, https://usegalaxy.org.au/published/workflow?id=0af0ea50f1237952, https://usegalaxy.org.au/published/workflow?id=0c567180448d8774, https://usegalaxy.org.au/published/workflow?id=0c6f7bfc826433c4, https://usegalaxy.org.au/published/workflow?id=0cfc1408fd9ea4e7, https://usegalaxy.org.au/published/workflow?id=0d1db28665d19bda, https://usegalaxy.org.au/published/workflow?id=0f7406ada6706c91, https://usegalaxy.org.au/published/workflow?id=10355b2680374a03, https://usegalaxy.org.au/published/workflow?id=114fb9589bb9db92, https://usegalaxy.org.au/published/workflow?id=115151c2c8998d44, https://usegalaxy.org.au/published/workflow?id=13ce18408ee7acc9, https://usegalaxy.org.au/published/workflow?id=14184bc2580a131f, https://usegalaxy.org.au/published/workflow?id=14b17f17d03c8424, https://usegalaxy.org.au/published/workflow?id=158b5d9107a05d95, https://usegalaxy.org.au/published/workflow?id=16f4846b4d6bc155, https://usegalaxy.org.au/published/workflow?id=178db14511c8f293, https://usegalaxy.org.au/published/workflow?id=18d48f1b26811372, https://usegalaxy.org.au/published/workflow?id=19315e6573c58239, https://usegalaxy.org.au/published/workflow?id=1a107e6611fb9c15, https://usegalaxy.org.au/published/workflow?id=1ab66d382630afa7, https://usegalaxy.org.au/published/workflow?id=1ad81f95ace878ea, https://usegalaxy.org.au/published/workflow?id=1c886f008a36b0b8, https://usegalaxy.org.au/published/workflow?id=1dd4392c51766383, https://usegalaxy.org.au/published/workflow?id=1eb3e1452c672480, https://usegalaxy.org.au/published/workflow?id=1f63ec596e578b1c, https://usegalaxy.org.au/published/workflow?id=1ff259845498b818, https://usegalaxy.org.au/published/workflow?id=20e5e6b233ffb951, https://usegalaxy.org.au/published/workflow?id=210ca013cc1cf185, https://usegalaxy.org.au/published/workflow?id=2470cb61ba51288c, https://usegalaxy.org.au/published/workflow?id=25403321a649a92b, https://usegalaxy.org.au/published/workflow?id=2543e425fa6d5144, https://usegalaxy.org.au/published/workflow?id=25ac9b4f2e39af97, https://usegalaxy.org.au/published/workflow?id=25d52afddaa3451b, https://usegalaxy.org.au/published/workflow?id=2617fee24459e680, https://usegalaxy.org.au/published/workflow?id=27205feb28b0ce06, https://usegalaxy.org.au/published/workflow?id=2789fb3590727342, https://usegalaxy.org.au/published/workflow?id=281ea78467e73147, https://usegalaxy.org.au/published/workflow?id=2980172ed0226b59, https://usegalaxy.org.au/published/workflow?id=2999a1891ffe201b, https://usegalaxy.org.au/published/workflow?id=2a0046582f5f15a1, https://usegalaxy.org.au/published/workflow?id=2afeae1ec03c0b57, https://usegalaxy.org.au/published/workflow?id=2b2ce7e1206d177d, https://usegalaxy.org.au/published/workflow?id=2c58509f80897972, https://usegalaxy.org.au/published/workflow?id=2cef9a1633e0a067, https://usegalaxy.org.au/published/workflow?id=2d45d7138d8715b4, https://usegalaxy.org.au/published/workflow?id=2f520cb446adf726, https://usegalaxy.org.au/published/workflow?id=2f7c0e3221cbca2f, https://usegalaxy.org.au/published/workflow?id=301fdb29c513ffbe, https://usegalaxy.org.au/published/workflow?id=30430b75d05f54eb, https://usegalaxy.org.au/published/workflow?id=30a601039d24e2eb, https://usegalaxy.org.au/published/workflow?id=30b2cd025e0300da, https://usegalaxy.org.au/published/workflow?id=31449596b22f81f4, https://usegalaxy.org.au/published/workflow?id=319e9d693fac8dce, https://usegalaxy.org.au/published/workflow?id=31dbd313e5c8160b, https://usegalaxy.org.au/published/workflow?id=3223ceaa2b58d940, https://usegalaxy.org.au/published/workflow?id=32d28f800adcea42, https://usegalaxy.org.au/published/workflow?id=35384818ee1cbac2, https://usegalaxy.org.au/published/workflow?id=3604307ec2835628, https://usegalaxy.org.au/published/workflow?id=36f54eda8568355d, https://usegalaxy.org.au/published/workflow?id=371c9892d261cee2, https://usegalaxy.org.au/published/workflow?id=374311292d72c9f9, https://usegalaxy.org.au/published/workflow?id=383ce49fa7a367e9, https://usegalaxy.org.au/published/workflow?id=39b464084d930a33, https://usegalaxy.org.au/published/workflow?id=39d56981a6854d82, https://usegalaxy.org.au/published/workflow?id=3ac73a2f00423326, https://usegalaxy.org.au/published/workflow?id=3bc45aaed5da1058, https://usegalaxy.org.au/published/workflow?id=3c1b1f210c7c292b, https://usegalaxy.org.au/published/workflow?id=3c657dd766d02f6a, https://usegalaxy.org.au/published/workflow?id=3c727d5cd349a846, https://usegalaxy.org.au/published/workflow?id=3c7b55daae7c119b, https://usegalaxy.org.au/published/workflow?id=3ce9dc804780e4a1, https://usegalaxy.org.au/published/workflow?id=3df7f45b7b388f8c, https://usegalaxy.org.au/published/workflow?id=3e7fcfd23872ad0d, https://usegalaxy.org.au/published/workflow?id=3ef07022656067b1, https://usegalaxy.org.au/published/workflow?id=3f39cf407c185724, https://usegalaxy.org.au/published/workflow?id=3fd10af90a07f771, https://usegalaxy.org.au/published/workflow?id=40666ceb68d101ac, https://usegalaxy.org.au/published/workflow?id=408a31694e9c85e6, https://usegalaxy.org.au/published/workflow?id=410d0d19b6589c78, https://usegalaxy.org.au/published/workflow?id=41795303a88d9e94, https://usegalaxy.org.au/published/workflow?id=41b115a9be4b6002, https://usegalaxy.org.au/published/workflow?id=41bd0340dcde60ec, https://usegalaxy.org.au/published/workflow?id=41e005d4ebb5885a, https://usegalaxy.org.au/published/workflow?id=421adea2f259ec26, https://usegalaxy.org.au/published/workflow?id=4267bd1e4cfd1901, https://usegalaxy.org.au/published/workflow?id=43f2dabbc1932e30, https://usegalaxy.org.au/published/workflow?id=44bad90b676d58f6, https://usegalaxy.org.au/published/workflow?id=45c8789533c45abf, https://usegalaxy.org.au/published/workflow?id=466809eb3392f7fb, https://usegalaxy.org.au/published/workflow?id=47cacc06d404a8c6, https://usegalaxy.org.au/published/workflow?id=47ce6a2d30887637, https://usegalaxy.org.au/published/workflow?id=48a25f8e58d068e6, https://usegalaxy.org.au/published/workflow?id=48a60965b6b3ff54, https://usegalaxy.org.au/published/workflow?id=49b5c35b9723fa62, https://usegalaxy.org.au/published/workflow?id=4bc8ac41ecff7daf, https://usegalaxy.org.au/published/workflow?id=4bd6c5c12fb1a69a, https://usegalaxy.org.au/published/workflow?id=4c7e0703aace6aa3, https://usegalaxy.org.au/published/workflow?id=4e096a68187ce652, https://usegalaxy.org.au/published/workflow?id=4efed79608f85604, https://usegalaxy.org.au/published/workflow?id=4f2818b6620037af, https://usegalaxy.org.au/published/workflow?id=4f562265cbb14cd6, https://usegalaxy.org.au/published/workflow?id=51b745f8c964e5c6, https://usegalaxy.org.au/published/workflow?id=51bad198f1fd1215, https://usegalaxy.org.au/published/workflow?id=52056336f24eccf6, https://usegalaxy.org.au/published/workflow?id=52065a4100b11184, https://usegalaxy.org.au/published/workflow?id=525612313de7591e, https://usegalaxy.org.au/published/workflow?id=5314a7a4732a0ef1, https://usegalaxy.org.au/published/workflow?id=533dbb3242ee4255, https://usegalaxy.org.au/published/workflow?id=5442f0437ade82c4, https://usegalaxy.org.au/published/workflow?id=544cb12a16f283b8, https://usegalaxy.org.au/published/workflow?id=5550585ffc3d8d0e, https://usegalaxy.org.au/published/workflow?id=557601292ea0f6f3, https://usegalaxy.org.au/published/workflow?id=56599572e0364e2a, https://usegalaxy.org.au/published/workflow?id=5693811cd933d2a2, https://usegalaxy.org.au/published/workflow?id=56bda8e4b0018e03, https://usegalaxy.org.au/published/workflow?id=57b558e1a76c09e1, https://usegalaxy.org.au/published/workflow?id=5a4e49ef8693d7c4, https://usegalaxy.org.au/published/workflow?id=5b0c0e34394afed1, https://usegalaxy.org.au/published/workflow?id=5be983b903469f07, https://usegalaxy.org.au/published/workflow?id=5cbee52cf03b6f9a, https://usegalaxy.org.au/published/workflow?id=5cd9b9338e75f254, https://usegalaxy.org.au/published/workflow?id=5ce00d3eab862f4e, https://usegalaxy.org.au/published/workflow?id=5d6773ed5b2f41cb, https://usegalaxy.org.au/published/workflow?id=5ea74382fb77eb10, https://usegalaxy.org.au/published/workflow?id=5f4f874e49515555, https://usegalaxy.org.au/published/workflow?id=608f3ad8f485e7a8, https://usegalaxy.org.au/published/workflow?id=60c0dec52cdca708, https://usegalaxy.org.au/published/workflow?id=6204bbcfe56931eb, https://usegalaxy.org.au/published/workflow?id=625f3c52832b0591, https://usegalaxy.org.au/published/workflow?id=63789b6f82172679, https://usegalaxy.org.au/published/workflow?id=6448b82959076a29, https://usegalaxy.org.au/published/workflow?id=644d8e4c78df8e36, https://usegalaxy.org.au/published/workflow?id=6469ade8f6f7c718, https://usegalaxy.org.au/published/workflow?id=67191ea9fe977e08, https://usegalaxy.org.au/published/workflow?id=677ef3322366c953, https://usegalaxy.org.au/published/workflow?id=68b2961117e62890, https://usegalaxy.org.au/published/workflow?id=69233fb6edfcdde9, https://usegalaxy.org.au/published/workflow?id=69d91340fc7effa2, https://usegalaxy.org.au/published/workflow?id=6a04c54236f30e8d, https://usegalaxy.org.au/published/workflow?id=6b1b0a945d367b4c, https://usegalaxy.org.au/published/workflow?id=6b2716309947836d, https://usegalaxy.org.au/published/workflow?id=6b34c95a247d15e3, https://usegalaxy.org.au/published/workflow?id=6b3df543536faf8c, https://usegalaxy.org.au/published/workflow?id=6c27019d03dd49d8, https://usegalaxy.org.au/published/workflow?id=6c9129acb9d98afe, https://usegalaxy.org.au/published/workflow?id=6cdbcd1f667d0f16, https://usegalaxy.org.au/published/workflow?id=6e1e24f9e0326930, https://usegalaxy.org.au/published/workflow?id=6efcacf14bfc18b3, https://usegalaxy.org.au/published/workflow?id=6f0801fecbba5d3f, https://usegalaxy.org.au/published/workflow?id=71bad95f72c9f30d, https://usegalaxy.org.au/published/workflow?id=723513b09d6690b8, https://usegalaxy.org.au/published/workflow?id=738350fc2ca69c0b, https://usegalaxy.org.au/published/workflow?id=73ff1aa9acc0ad2a, https://usegalaxy.org.au/published/workflow?id=74186b006665daf8, https://usegalaxy.org.au/published/workflow?id=749d8f2d26e0a111, https://usegalaxy.org.au/published/workflow?id=75113a1b41904d2a, https://usegalaxy.org.au/published/workflow?id=7563b3ef697a69fd, https://usegalaxy.org.au/published/workflow?id=76323f103844f75b, https://usegalaxy.org.au/published/workflow?id=76bb6bde19975e05, https://usegalaxy.org.au/published/workflow?id=79522a1f7b0c53cb, https://usegalaxy.org.au/published/workflow?id=7a4ee63a04362967, https://usegalaxy.org.au/published/workflow?id=7ad277dd448e57b3, https://usegalaxy.org.au/published/workflow?id=7ad9410e36ee9ea1, https://usegalaxy.org.au/published/workflow?id=7b203d52f496e2c7, https://usegalaxy.org.au/published/workflow?id=7ba13e928de65e61, https://usegalaxy.org.au/published/workflow?id=7becafd394472dfb, https://usegalaxy.org.au/published/workflow?id=7c22d726e1716f4b, https://usegalaxy.org.au/published/workflow?id=7c2e7b292803b3e9, https://usegalaxy.org.au/published/workflow?id=7c866ed4a3552d0d, https://usegalaxy.org.au/published/workflow?id=7d268e7209a68e2e, https://usegalaxy.org.au/published/workflow?id=7ea616c652d08fb6, https://usegalaxy.org.au/published/workflow?id=7ef245f5ae3b916d, https://usegalaxy.org.au/published/workflow?id=7fa13ccbf044edc5, https://usegalaxy.org.au/published/workflow?id=7fd58f5fc93f414e, https://usegalaxy.org.au/published/workflow?id=7febc6ac6f106e57, https://usegalaxy.org.au/published/workflow?id=810242a3dc4f6170, https://usegalaxy.org.au/published/workflow?id=83680c1c6dffb05b, https://usegalaxy.org.au/published/workflow?id=83a535840b388980, https://usegalaxy.org.au/published/workflow?id=83c20d8e5fd97313, https://usegalaxy.org.au/published/workflow?id=83e3ceceb1a92493, https://usegalaxy.org.au/published/workflow?id=8433a2f79b2e5894, https://usegalaxy.org.au/published/workflow?id=8483ae422665a6c1, https://usegalaxy.org.au/published/workflow?id=8483e8d3e8d0ddc9, https://usegalaxy.org.au/published/workflow?id=84c98a23187d2a36, https://usegalaxy.org.au/published/workflow?id=8597166abda0a375, https://usegalaxy.org.au/published/workflow?id=85aede91db0122e4, https://usegalaxy.org.au/published/workflow?id=863eee1b041b6c58, https://usegalaxy.org.au/published/workflow?id=874492eb776ba813, https://usegalaxy.org.au/published/workflow?id=879d4fb110a61f7a, https://usegalaxy.org.au/published/workflow?id=888eb87b62c4e6dd, https://usegalaxy.org.au/published/workflow?id=888f8377eb6eabf2, https://usegalaxy.org.au/published/workflow?id=88c0d875eea2ee49, https://usegalaxy.org.au/published/workflow?id=8926e592f2e60863, https://usegalaxy.org.au/published/workflow?id=897dfa78c3b25356, https://usegalaxy.org.au/published/workflow?id=897e9d7432d231e9, https://usegalaxy.org.au/published/workflow?id=8a6233015db6dd24, https://usegalaxy.org.au/published/workflow?id=8b5897305dcaf076, https://usegalaxy.org.au/published/workflow?id=8b6739a000780d99, https://usegalaxy.org.au/published/workflow?id=8b8a5b50f2edc72c, https://usegalaxy.org.au/published/workflow?id=8b955274ca3ca3dc, https://usegalaxy.org.au/published/workflow?id=8bf8c9929249f37d, https://usegalaxy.org.au/published/workflow?id=8c40b4a911517cc5, https://usegalaxy.org.au/published/workflow?id=8cab31db0bd3ff52, https://usegalaxy.org.au/published/workflow?id=8d196c8c62530dc0, https://usegalaxy.org.au/published/workflow?id=8d47811c6154d347, https://usegalaxy.org.au/published/workflow?id=8d6010d07cc2e170, https://usegalaxy.org.au/published/workflow?id=8d6d4f848067f3d9, https://usegalaxy.org.au/published/workflow?id=8dd86497bc15d981, https://usegalaxy.org.au/published/workflow?id=8e8a5cce9f3f2f67, https://usegalaxy.org.au/published/workflow?id=8fe84de499e96485, https://usegalaxy.org.au/published/workflow?id=9157a7438977b9e9, https://usegalaxy.org.au/published/workflow?id=91cfd96f697ba034, https://usegalaxy.org.au/published/workflow?id=91ee716be8bfd508, https://usegalaxy.org.au/published/workflow?id=925c167abd5610ae, https://usegalaxy.org.au/published/workflow?id=932bad88f8dc8d33, https://usegalaxy.org.au/published/workflow?id=954318db8c8d9219, https://usegalaxy.org.au/published/workflow?id=95a9070469a895c3, https://usegalaxy.org.au/published/workflow?id=95efb414f5984735, https://usegalaxy.org.au/published/workflow?id=9642aadb83c4f752, https://usegalaxy.org.au/published/workflow?id=970dc0d8bd74707f, https://usegalaxy.org.au/published/workflow?id=975ddb0eb436f1fd, https://usegalaxy.org.au/published/workflow?id=97628b0604d5ec77, https://usegalaxy.org.au/published/workflow?id=9787c8b7adeedb0c, https://usegalaxy.org.au/published/workflow?id=978953f492b2b914, https://usegalaxy.org.au/published/workflow?id=9804030358c3f844, https://usegalaxy.org.au/published/workflow?id=981d7b02416b7734, https://usegalaxy.org.au/published/workflow?id=9898348d95033af2, https://usegalaxy.org.au/published/workflow?id=98f660971010d11d, https://usegalaxy.org.au/published/workflow?id=9988bc2402f32dc1, https://usegalaxy.org.au/published/workflow?id=9b18123afbe1264b, https://usegalaxy.org.au/published/workflow?id=9b1afa59c087eacd, https://usegalaxy.org.au/published/workflow?id=9b75924c483b5f6b, https://usegalaxy.org.au/published/workflow?id=9bc31dff5bcec42b, https://usegalaxy.org.au/published/workflow?id=9c60b83feaa22415, https://usegalaxy.org.au/published/workflow?id=9df67170c9260539, https://usegalaxy.org.au/published/workflow?id=9e0bae0505ee7c07, https://usegalaxy.org.au/published/workflow?id=9e8d9b7055b7c863, https://usegalaxy.org.au/published/workflow?id=9ec9fe2715d7cfdc, https://usegalaxy.org.au/published/workflow?id=a02c102e179596cb, https://usegalaxy.org.au/published/workflow?id=a1c59e9f5c7327d2, https://usegalaxy.org.au/published/workflow?id=a29670ff0ecb1a38, https://usegalaxy.org.au/published/workflow?id=a345bf84eb9bf6b2, https://usegalaxy.org.au/published/workflow?id=a484cdc9ff9d7e9e, https://usegalaxy.org.au/published/workflow?id=a525966251895f8a, https://usegalaxy.org.au/published/workflow?id=a5ccbb9aced9ac53, https://usegalaxy.org.au/published/workflow?id=a61d4bda54de7cd1, https://usegalaxy.org.au/published/workflow?id=a69db7f914c06407, https://usegalaxy.org.au/published/workflow?id=a7346c25dfdf2e3e, https://usegalaxy.org.au/published/workflow?id=a763e53653b10ce0, https://usegalaxy.org.au/published/workflow?id=a7726d18d2a5fcf2, https://usegalaxy.org.au/published/workflow?id=a7a30d970584f9ac, https://usegalaxy.org.au/published/workflow?id=a7d1cf2bb636e695, https://usegalaxy.org.au/published/workflow?id=a820d57cc8300253, https://usegalaxy.org.au/published/workflow?id=a8ec08a1408cd6e7, https://usegalaxy.org.au/published/workflow?id=a9fa6101f1fb13e2, https://usegalaxy.org.au/published/workflow?id=aa1d123c0a0929f3, https://usegalaxy.org.au/published/workflow?id=aa94c77b720a2810, https://usegalaxy.org.au/published/workflow?id=aaaf580eb00459b6, https://usegalaxy.org.au/published/workflow?id=aae07f802002fdd0, https://usegalaxy.org.au/published/workflow?id=ad10cd704268dcf0, https://usegalaxy.org.au/published/workflow?id=ad13b4a61e8987b1, https://usegalaxy.org.au/published/workflow?id=ae5dca8108d1a8a6, https://usegalaxy.org.au/published/workflow?id=ae6892f1df022097, https://usegalaxy.org.au/published/workflow?id=ae773dfaa074cb72, https://usegalaxy.org.au/published/workflow?id=ae894cff1d1aba01, https://usegalaxy.org.au/published/workflow?id=aed93da6fd6e4e13, https://usegalaxy.org.au/published/workflow?id=aee5b5645c51cac3, https://usegalaxy.org.au/published/workflow?id=af3f40cba4d7afa6, https://usegalaxy.org.au/published/workflow?id=af7b95f46485308c, https://usegalaxy.org.au/published/workflow?id=af990cca72794142, https://usegalaxy.org.au/published/workflow?id=afd9a8bbc07f9c3f, https://usegalaxy.org.au/published/workflow?id=b03b577156e4db5b, https://usegalaxy.org.au/published/workflow?id=b08342866a118a5e, https://usegalaxy.org.au/published/workflow?id=b191da6e594747fb, https://usegalaxy.org.au/published/workflow?id=b19fa49405117317, https://usegalaxy.org.au/published/workflow?id=b20f28151e46d3e0, https://usegalaxy.org.au/published/workflow?id=b432a1312859edd2, https://usegalaxy.org.au/published/workflow?id=b5131e3a0ef2676e, https://usegalaxy.org.au/published/workflow?id=b517cabb697491a0, https://usegalaxy.org.au/published/workflow?id=b57bf134896c30ea, https://usegalaxy.org.au/published/workflow?id=b59fada651043735, https://usegalaxy.org.au/published/workflow?id=b6db525b1b73394b, https://usegalaxy.org.au/published/workflow?id=b7226d37b25df833, https://usegalaxy.org.au/published/workflow?id=b7aa22291322e505, https://usegalaxy.org.au/published/workflow?id=b8968fb0bf796e53, https://usegalaxy.org.au/published/workflow?id=b8c661ff6b79383b, https://usegalaxy.org.au/published/workflow?id=b9faf6a3f48fc11b, https://usegalaxy.org.au/published/workflow?id=ba30cc4a84c449f9, https://usegalaxy.org.au/published/workflow?id=ba7a9d4c857d26b7, https://usegalaxy.org.au/published/workflow?id=baa763dbdf6afb71, https://usegalaxy.org.au/published/workflow?id=bb0feff5d764df60, https://usegalaxy.org.au/published/workflow?id=bcf230e526632064, https://usegalaxy.org.au/published/workflow?id=bd1cf22d47389742, https://usegalaxy.org.au/published/workflow?id=bd251174d94cde9d, https://usegalaxy.org.au/published/workflow?id=bda98c5a0ea70dd0, https://usegalaxy.org.au/published/workflow?id=be9213411c520096, https://usegalaxy.org.au/published/workflow?id=be96bb47b6d6435a, https://usegalaxy.org.au/published/workflow?id=bf80ef6e5f37deb7, https://usegalaxy.org.au/published/workflow?id=c1a0a3888d9ee3ac, https://usegalaxy.org.au/published/workflow?id=c1ce3f2ae7c81c3e, https://usegalaxy.org.au/published/workflow?id=c296b3848708f6f1, https://usegalaxy.org.au/published/workflow?id=c2dee690320f9845, https://usegalaxy.org.au/published/workflow?id=c2e5a43356042b30, https://usegalaxy.org.au/published/workflow?id=c38b998d3e90c329, https://usegalaxy.org.au/published/workflow?id=c3b3717502ff6f76, https://usegalaxy.org.au/published/workflow?id=c3bb21f20a3ce689, https://usegalaxy.org.au/published/workflow?id=c3e198bc2146b4ad, https://usegalaxy.org.au/published/workflow?id=c456492ce4f963d0, https://usegalaxy.org.au/published/workflow?id=c64dcc1e6a67f3e4, https://usegalaxy.org.au/published/workflow?id=c65a5af6c0383f8c, https://usegalaxy.org.au/published/workflow?id=c6a71573a299eb3a, https://usegalaxy.org.au/published/workflow?id=c7e1f666a3366823, https://usegalaxy.org.au/published/workflow?id=c7f2d6490128dc3c, https://usegalaxy.org.au/published/workflow?id=c87c1f8c4eff415a, https://usegalaxy.org.au/published/workflow?id=c8d18e2c03dca796, https://usegalaxy.org.au/published/workflow?id=c9156ca3df2b595c, https://usegalaxy.org.au/published/workflow?id=ca7fc6e2adbf1f26, https://usegalaxy.org.au/published/workflow?id=cb960edf95d2dc35, https://usegalaxy.org.au/published/workflow?id=ccc6602623583bcc, https://usegalaxy.org.au/published/workflow?id=ccf936c5b2f2c2f3, https://usegalaxy.org.au/published/workflow?id=ccfae75390038ced, https://usegalaxy.org.au/published/workflow?id=ce7106593536f900, https://usegalaxy.org.au/published/workflow?id=ce7f6a1c824920e2, https://usegalaxy.org.au/published/workflow?id=cef4a514f35576e5, https://usegalaxy.org.au/published/workflow?id=cef68481b305a516, https://usegalaxy.org.au/published/workflow?id=d126940d33e63036, https://usegalaxy.org.au/published/workflow?id=d298edda13b382e7, https://usegalaxy.org.au/published/workflow?id=d3521c05077192df, https://usegalaxy.org.au/published/workflow?id=d35d05be576e8b13, https://usegalaxy.org.au/published/workflow?id=d3989c6c2c663cd3, https://usegalaxy.org.au/published/workflow?id=d42d7b1aa47e870f, https://usegalaxy.org.au/published/workflow?id=d5ecfdbc04b24227, https://usegalaxy.org.au/published/workflow?id=d7a65f577fe5f16b, https://usegalaxy.org.au/published/workflow?id=d7c329b354f4426d, https://usegalaxy.org.au/published/workflow?id=d7f3fc810261e419, https://usegalaxy.org.au/published/workflow?id=d9c181fd954b629a, https://usegalaxy.org.au/published/workflow?id=db0867756cb233b7, https://usegalaxy.org.au/published/workflow?id=db0bc7357c181222, https://usegalaxy.org.au/published/workflow?id=db3370a412c4de78, https://usegalaxy.org.au/published/workflow?id=dce29c35dfac48b1, https://usegalaxy.org.au/published/workflow?id=dd6f465ab1eb10b0, https://usegalaxy.org.au/published/workflow?id=de1c04a2caf70647, https://usegalaxy.org.au/published/workflow?id=df4e186069552649, https://usegalaxy.org.au/published/workflow?id=e08b04291839e79a, https://usegalaxy.org.au/published/workflow?id=e08ef6b519f5fba0, https://usegalaxy.org.au/published/workflow?id=e0b89b4e50d1a99b, https://usegalaxy.org.au/published/workflow?id=e1fd89e7248b6661, https://usegalaxy.org.au/published/workflow?id=e28ca83f14f4ede5, https://usegalaxy.org.au/published/workflow?id=e3cda847fe727b61, https://usegalaxy.org.au/published/workflow?id=e439a0e17a90d24c, https://usegalaxy.org.au/published/workflow?id=e4ddf33ee5b5e259, https://usegalaxy.org.au/published/workflow?id=e52a3479c8216291, https://usegalaxy.org.au/published/workflow?id=e57c6d05b560e206, https://usegalaxy.org.au/published/workflow?id=e62f743342851151, https://usegalaxy.org.au/published/workflow?id=e826584d78b69467, https://usegalaxy.org.au/published/workflow?id=e8d3651c07ce0bec, https://usegalaxy.org.au/published/workflow?id=e92b4d8dfa2f1cf7, https://usegalaxy.org.au/published/workflow?id=ea687c5613fcce27, https://usegalaxy.org.au/published/workflow?id=eaa841e6b7384633, https://usegalaxy.org.au/published/workflow?id=eb3a4535204383fa, https://usegalaxy.org.au/published/workflow?id=ec79c2fab8eac15d, https://usegalaxy.org.au/published/workflow?id=ed2f72e3537e8a4a, https://usegalaxy.org.au/published/workflow?id=ee7a1615f187391d, https://usegalaxy.org.au/published/workflow?id=efd39a4be0a9a4e6, https://usegalaxy.org.au/published/workflow?id=f01be6a7685ac476, https://usegalaxy.org.au/published/workflow?id=f0ced9a5d34b2aff, https://usegalaxy.org.au/published/workflow?id=f19d63d7c9a48160, https://usegalaxy.org.au/published/workflow?id=f25a05070bf97ded, https://usegalaxy.org.au/published/workflow?id=f268c181a47d0cab, https://usegalaxy.org.au/published/workflow?id=f53d8ade897b3f46, https://usegalaxy.org.au/published/workflow?id=f5c0b0bc5e023e42, https://usegalaxy.org.au/published/workflow?id=f627023a3401bf9b, https://usegalaxy.org.au/published/workflow?id=f7a866159f1eaecf, https://usegalaxy.org.au/published/workflow?id=f7adc76331620f34, https://usegalaxy.org.au/published/workflow?id=f944f2d3fbd1f062, https://usegalaxy.org.au/published/workflow?id=fa37223950a91f34, https://usegalaxy.org.au/published/workflow?id=fa4fa7353dffef9a, https://usegalaxy.org.au/published/workflow?id=fa87a22c8dcd8d78, https://usegalaxy.org.au/published/workflow?id=fb0986a952c35e0a, https://usegalaxy.org.au/published/workflow?id=fb644a9649f36f40, https://usegalaxy.org.au/published/workflow?id=fc3c83b11f527977, https://usegalaxy.org.au/published/workflow?id=fc64a77321752a3c, https://usegalaxy.org.au/published/workflow?id=fc6f8afdee980f0e, https://usegalaxy.org.au/published/workflow?id=fca05a51c9c91df4, https://usegalaxy.org.au/published/workflow?id=fd477917a3d27f61, https://usegalaxy.org.au/published/workflow?id=fd8fb237f8dc24c3, https://usegalaxy.org.au/published/workflow?id=fe1de81a97578368, https://usegalaxy.org.au/published/workflow?id=fe1e7fa0bc437ed8, https://usegalaxy.org.au/published/workflow?id=fe4e34a407157389, https://usegalaxy.org.au/published/workflow?id=fe5542c99cdc57ce, https://usegalaxy.org.au/published/workflow?id=fe893d72526eba71, https://usegalaxy.org.au/published/workflow?id=fedf2874752ac1f6, https://usegalaxy.org.au/published/workflow?id=ff42213dda7d3e59, https://usegalaxy.org.au/published/workflow?id=fff2e49bc90e38ca, https://usegalaxy.org/published/workflow?id=00a501a1fada4104, https://usegalaxy.org/published/workflow?id=00bc4e99626da1ba, https://usegalaxy.org/published/workflow?id=019be65613876562, https://usegalaxy.org/published/workflow?id=028f1beead539975, https://usegalaxy.org/published/workflow?id=02e29499b946f3bb, https://usegalaxy.org/published/workflow?id=044c5ce43f2e1829, https://usegalaxy.org/published/workflow?id=05e86b4df0d14800, https://usegalaxy.org/published/workflow?id=05ef809e2b11154c, https://usegalaxy.org/published/workflow?id=063173d36c254105, https://usegalaxy.org/published/workflow?id=06b489dc859f6e39, https://usegalaxy.org/published/workflow?id=06f3ca70b542556e, https://usegalaxy.org/published/workflow?id=0775d8efad0dac10, https://usegalaxy.org/published/workflow?id=07dca0dc191fb1de, https://usegalaxy.org/published/workflow?id=07e873a6d75dfe9f, https://usegalaxy.org/published/workflow?id=08da44d18689dffc, https://usegalaxy.org/published/workflow?id=08f58af7b6cc0ab6, https://usegalaxy.org/published/workflow?id=091f788edad78956, https://usegalaxy.org/published/workflow?id=0930f955bdac93e8, https://usegalaxy.org/published/workflow?id=098375608a1223aa, https://usegalaxy.org/published/workflow?id=098fd236c5e2895d, https://usegalaxy.org/published/workflow?id=0993daadf2db5f51, https://usegalaxy.org/published/workflow?id=0b85fb10ed25d34e, https://usegalaxy.org/published/workflow?id=0d47009eb2d7bdc1, https://usegalaxy.org/published/workflow?id=0dec1b9dbbb2f425, https://usegalaxy.org/published/workflow?id=0e5a3899ae97076b, https://usegalaxy.org/published/workflow?id=0e6a842034ca9aec, https://usegalaxy.org/published/workflow?id=0ebb1f5b6c9c8ab9, https://usegalaxy.org/published/workflow?id=0ee0493f3168cbb3, https://usegalaxy.org/published/workflow?id=0f8b4fd0bf276968, https://usegalaxy.org/published/workflow?id=0fa2ce12c2874b1d, https://usegalaxy.org/published/workflow?id=1010a9b57c77239c, https://usegalaxy.org/published/workflow?id=10c2136973c88d8a, https://usegalaxy.org/published/workflow?id=10c5f3c5cadd7417, https://usegalaxy.org/published/workflow?id=1234a128adc25b03, https://usegalaxy.org/published/workflow?id=1245e9435cbc3985, https://usegalaxy.org/published/workflow?id=1250ec3ad6199cda, https://usegalaxy.org/published/workflow?id=12a52ae52e0f1053, https://usegalaxy.org/published/workflow?id=137d0f05a71d7acb, https://usegalaxy.org/published/workflow?id=1388fe5d8b50bc7c, https://usegalaxy.org/published/workflow?id=13a1fa4f6daf65cc, https://usegalaxy.org/published/workflow?id=13d9db3715f32b37, https://usegalaxy.org/published/workflow?id=148c071f5c5a4586, https://usegalaxy.org/published/workflow?id=150e288c2c2fe9e9, https://usegalaxy.org/published/workflow?id=156e245e3d9f22ce, https://usegalaxy.org/published/workflow?id=15a0e22570f71098, https://usegalaxy.org/published/workflow?id=15ea806eaf077617, https://usegalaxy.org/published/workflow?id=162fda90525220de, https://usegalaxy.org/published/workflow?id=16910402667eec78, https://usegalaxy.org/published/workflow?id=170287dcfb9de475, https://usegalaxy.org/published/workflow?id=172ee5e5bef33d2e, https://usegalaxy.org/published/workflow?id=17f3d7e52777d2e8, https://usegalaxy.org/published/workflow?id=1829c91a30138721, https://usegalaxy.org/published/workflow?id=195f7acb16c5a2e2, https://usegalaxy.org/published/workflow?id=19c1ba21e82d8615, https://usegalaxy.org/published/workflow?id=19ce6cf93298e268, https://usegalaxy.org/published/workflow?id=1a23d8c795846251, https://usegalaxy.org/published/workflow?id=1b57987895f8ca9e, https://usegalaxy.org/published/workflow?id=1c5a7196a442dd02, https://usegalaxy.org/published/workflow?id=1cad9a0b375ed3d1, https://usegalaxy.org/published/workflow?id=1cbd946c4cc0e7b9, https://usegalaxy.org/published/workflow?id=1d24cc949c52e475, https://usegalaxy.org/published/workflow?id=1d56a0975fca0e99, https://usegalaxy.org/published/workflow?id=1d69ab87c94d68fd, https://usegalaxy.org/published/workflow?id=1d8227ad3f3651a0, https://usegalaxy.org/published/workflow?id=1dd63a7b4c6f4c83, https://usegalaxy.org/published/workflow?id=1ddabc7d272dc702, https://usegalaxy.org/published/workflow?id=1e0a55635f5b04cf, https://usegalaxy.org/published/workflow?id=1e1a299825f27f11, https://usegalaxy.org/published/workflow?id=1e1d7fac7e241768, https://usegalaxy.org/published/workflow?id=1eec2586d1ff908b, https://usegalaxy.org/published/workflow?id=1f00e44f590b8369, https://usegalaxy.org/published/workflow?id=1f28e673ea725541, https://usegalaxy.org/published/workflow?id=1f4dc0488f0554c6, https://usegalaxy.org/published/workflow?id=1f98df1adba71b98, https://usegalaxy.org/published/workflow?id=1ffc71df8eeed57e, https://usegalaxy.org/published/workflow?id=2078abc4c99c3344, https://usegalaxy.org/published/workflow?id=20b7ae4b517a80fd, https://usegalaxy.org/published/workflow?id=2125db88b4a71c09, https://usegalaxy.org/published/workflow?id=226b506d1fc30e96, https://usegalaxy.org/published/workflow?id=23468eea382e6bb4, https://usegalaxy.org/published/workflow?id=25a9f0693ff6d327, https://usegalaxy.org/published/workflow?id=25b8b5af30042d76, https://usegalaxy.org/published/workflow?id=26019c2b056d3a1c, https://usegalaxy.org/published/workflow?id=26b35874b9e32355, https://usegalaxy.org/published/workflow?id=271b97e5c00c4da4, https://usegalaxy.org/published/workflow?id=27327a985fa9147f, https://usegalaxy.org/published/workflow?id=27ee9da9121d0522, https://usegalaxy.org/published/workflow?id=283bc048cc7a80f5, https://usegalaxy.org/published/workflow?id=284150bb1f296378, https://usegalaxy.org/published/workflow?id=28b2550248a54d74, https://usegalaxy.org/published/workflow?id=291829fed6fa7c44, https://usegalaxy.org/published/workflow?id=2957924403998f3a, https://usegalaxy.org/published/workflow?id=2b41752b8518a87b, https://usegalaxy.org/published/workflow?id=2b5346b94358df88, https://usegalaxy.org/published/workflow?id=2b6245843e632c05, https://usegalaxy.org/published/workflow?id=2b820beaeb49dd64, https://usegalaxy.org/published/workflow?id=2c5c627c08563398, https://usegalaxy.org/published/workflow?id=2cc5472ad7c039d1, https://usegalaxy.org/published/workflow?id=2d6d74294e911fa3, https://usegalaxy.org/published/workflow?id=2d994cc02ec05ede, https://usegalaxy.org/published/workflow?id=2e029537d2f4ab50, https://usegalaxy.org/published/workflow?id=2f4d5f833aa1c981, https://usegalaxy.org/published/workflow?id=2f774500d5bec9a6, https://usegalaxy.org/published/workflow?id=305eafecadfa8815, https://usegalaxy.org/published/workflow?id=305fb9f84b053713, https://usegalaxy.org/published/workflow?id=307d19833ffb5395, https://usegalaxy.org/published/workflow?id=30ba39be60ec29be, https://usegalaxy.org/published/workflow?id=313d50268e1e22e4, https://usegalaxy.org/published/workflow?id=31a6145b0832fa48, https://usegalaxy.org/published/workflow?id=31ed5a2bcc8da51a, https://usegalaxy.org/published/workflow?id=326ced2230a49c26, https://usegalaxy.org/published/workflow?id=32c769241ffce3d1, https://usegalaxy.org/published/workflow?id=336795e890851c21, https://usegalaxy.org/published/workflow?id=33ae58f05e5e1d60, https://usegalaxy.org/published/workflow?id=33e827d75a0074df, https://usegalaxy.org/published/workflow?id=34ab5572a9547bfe, https://usegalaxy.org/published/workflow?id=357225c624e796b5, https://usegalaxy.org/published/workflow?id=35c022174ce79c1e, https://usegalaxy.org/published/workflow?id=3673a1ced343d0d0, https://usegalaxy.org/published/workflow?id=36c885b0bc829da3, https://usegalaxy.org/published/workflow?id=371b242d97f2f030, https://usegalaxy.org/published/workflow?id=375f5142c207a768, https://usegalaxy.org/published/workflow?id=3823773ef4ecaaf4, https://usegalaxy.org/published/workflow?id=3a51f1f54b2ef024, https://usegalaxy.org/published/workflow?id=3aa1b79aa6cca06b, https://usegalaxy.org/published/workflow?id=3ab66315f50501f0, https://usegalaxy.org/published/workflow?id=3ad9cdcda44b7dfb, https://usegalaxy.org/published/workflow?id=3b2bee20f0cfd957, https://usegalaxy.org/published/workflow?id=3b5437544ca3b5dc, https://usegalaxy.org/published/workflow?id=3ba73f679558017c, https://usegalaxy.org/published/workflow?id=3c076bc8551a23d2, https://usegalaxy.org/published/workflow?id=3c0af11dbeeee506, https://usegalaxy.org/published/workflow?id=3d0ba2f11f370e05, https://usegalaxy.org/published/workflow?id=3d7a9694bcee6db5, https://usegalaxy.org/published/workflow?id=3db4eb1ecb588d44, https://usegalaxy.org/published/workflow?id=3e57e668cf698d19, https://usegalaxy.org/published/workflow?id=3e6c9ab5ef3250ae, https://usegalaxy.org/published/workflow?id=3f7550d5d2bf0b96, https://usegalaxy.org/published/workflow?id=3fc5bdbd6355477c, https://usegalaxy.org/published/workflow?id=3fdd7a7907233d58, https://usegalaxy.org/published/workflow?id=405dc14eb02ff234, https://usegalaxy.org/published/workflow?id=408c799822cbf6ea, https://usegalaxy.org/published/workflow?id=424acfc2ded46f9f, https://usegalaxy.org/published/workflow?id=42bc3a770f0ab6b8, https://usegalaxy.org/published/workflow?id=4357180d40560019, https://usegalaxy.org/published/workflow?id=435f0340bf00c940, https://usegalaxy.org/published/workflow?id=438761debd08a9be, https://usegalaxy.org/published/workflow?id=442949862ba62462, https://usegalaxy.org/published/workflow?id=444c856f03b6d2a7, https://usegalaxy.org/published/workflow?id=4458439388155d92, https://usegalaxy.org/published/workflow?id=44781c8b0bd667ed, https://usegalaxy.org/published/workflow?id=448a0797f9150198, https://usegalaxy.org/published/workflow?id=45cb3e98b1319c7c, https://usegalaxy.org/published/workflow?id=4612ec88a57ab9e7, https://usegalaxy.org/published/workflow?id=462a1176b48eef4a, https://usegalaxy.org/published/workflow?id=46894456a9bec601, https://usegalaxy.org/published/workflow?id=46e718fb8eeb4d54, https://usegalaxy.org/published/workflow?id=46f184a0e95f3c1c, https://usegalaxy.org/published/workflow?id=472f73c3e81da1d9, https://usegalaxy.org/published/workflow?id=4790266996f12979, https://usegalaxy.org/published/workflow?id=47a2458ee9d57b24, https://usegalaxy.org/published/workflow?id=484f8fcf21d67376, https://usegalaxy.org/published/workflow?id=48963532e030de6c, https://usegalaxy.org/published/workflow?id=496b0e8a0e5a4191, https://usegalaxy.org/published/workflow?id=498a8c6329ca5728, https://usegalaxy.org/published/workflow?id=49a07807fcea8158, https://usegalaxy.org/published/workflow?id=4a01263e3d4b4edb, https://usegalaxy.org/published/workflow?id=4b41a8247f52c463, https://usegalaxy.org/published/workflow?id=4b7daa3c73c8ef30, https://usegalaxy.org/published/workflow?id=4b92dfd20d48d479, https://usegalaxy.org/published/workflow?id=4ba61941f31f0215, https://usegalaxy.org/published/workflow?id=4bbe4c8a6c52d03a, https://usegalaxy.org/published/workflow?id=4bf73376661baafd, https://usegalaxy.org/published/workflow?id=4ca8b023f9a33440, https://usegalaxy.org/published/workflow?id=4cc70b699ea8bc63, https://usegalaxy.org/published/workflow?id=4cf8cc42e97b2da6, https://usegalaxy.org/published/workflow?id=4de095b92ed661ac, https://usegalaxy.org/published/workflow?id=4e1ae78405034ad3, https://usegalaxy.org/published/workflow?id=4f6e8ff94ca4f164, https://usegalaxy.org/published/workflow?id=506acac8c6a58d5e, https://usegalaxy.org/published/workflow?id=516a2181b41af94e, https://usegalaxy.org/published/workflow?id=5199f404ad7ecef8, https://usegalaxy.org/published/workflow?id=51c485af11d90700, https://usegalaxy.org/published/workflow?id=51d80a44d7d6fff7, https://usegalaxy.org/published/workflow?id=52592de9687fc6de, https://usegalaxy.org/published/workflow?id=526b05cbffecbc85, https://usegalaxy.org/published/workflow?id=527adadecbab2eb6, https://usegalaxy.org/published/workflow?id=52b7524a3941885c, https://usegalaxy.org/published/workflow?id=52bde903adbbaf60, https://usegalaxy.org/published/workflow?id=52e2b69787ca7a17, https://usegalaxy.org/published/workflow?id=5336b9d26a083983, https://usegalaxy.org/published/workflow?id=533b1d5d08f9943e, https://usegalaxy.org/published/workflow?id=5361db01e3b6cc0c, https://usegalaxy.org/published/workflow?id=53834a5fb46ca0f6, https://usegalaxy.org/published/workflow?id=53dda64a5a6ebd54, https://usegalaxy.org/published/workflow?id=53fdff74729a6780, https://usegalaxy.org/published/workflow?id=53fea86eb74c224b, https://usegalaxy.org/published/workflow?id=5415e85a86898e41, https://usegalaxy.org/published/workflow?id=553125cd799e5982, https://usegalaxy.org/published/workflow?id=5532e6f775adb0d7, https://usegalaxy.org/published/workflow?id=56427a9b9c3848bf, https://usegalaxy.org/published/workflow?id=570172fbcf865e1d, https://usegalaxy.org/published/workflow?id=574e42683dc3961b, https://usegalaxy.org/published/workflow?id=57e6345fda3e2682, https://usegalaxy.org/published/workflow?id=582f3de3971fc38c, https://usegalaxy.org/published/workflow?id=58eeb06f911e8410, https://usegalaxy.org/published/workflow?id=59007e2bc9c807ee, https://usegalaxy.org/published/workflow?id=5944c5effd56b0d6, https://usegalaxy.org/published/workflow?id=597c4d54f8a8ebe7, https://usegalaxy.org/published/workflow?id=5a16ff38eb80da82, https://usegalaxy.org/published/workflow?id=5a55d9bd9701b1ce, https://usegalaxy.org/published/workflow?id=5a610d5a42d50cf3, https://usegalaxy.org/published/workflow?id=5aa4b9131c31cb79, https://usegalaxy.org/published/workflow?id=5b3e2ddf525da25d, https://usegalaxy.org/published/workflow?id=5b540de61a70df64, https://usegalaxy.org/published/workflow?id=5b8497a32bf01c4f, https://usegalaxy.org/published/workflow?id=5bcd1aade71a8035, https://usegalaxy.org/published/workflow?id=5bd6d7af64192b86, https://usegalaxy.org/published/workflow?id=5c85cd8c56b9f6ab, https://usegalaxy.org/published/workflow?id=5cb74afcca56a453, https://usegalaxy.org/published/workflow?id=5ccc7d708e13de60, https://usegalaxy.org/published/workflow?id=5d1208bd49f97aeb, https://usegalaxy.org/published/workflow?id=5dd0a672cceb15ec, https://usegalaxy.org/published/workflow?id=5dfec2a3ae5fa765, https://usegalaxy.org/published/workflow?id=5e18bbbe9ff2d9f5, https://usegalaxy.org/published/workflow?id=5efe288b18c7d0ab, https://usegalaxy.org/published/workflow?id=5f878c4cc3bff68c, https://usegalaxy.org/published/workflow?id=607d1683d6e26cef, https://usegalaxy.org/published/workflow?id=60b9910b7bb69f47, https://usegalaxy.org/published/workflow?id=612452c925d723b7, https://usegalaxy.org/published/workflow?id=6229546fb8b0eba9, https://usegalaxy.org/published/workflow?id=626260e3c3ee5c08, https://usegalaxy.org/published/workflow?id=62c842e67fca5ab7, https://usegalaxy.org/published/workflow?id=62ecc8078a396e9e, https://usegalaxy.org/published/workflow?id=63b0ce2faec558d5, https://usegalaxy.org/published/workflow?id=63b3b266bde77563, https://usegalaxy.org/published/workflow?id=63f61ad7cae40646, https://usegalaxy.org/published/workflow?id=642e71c64a975461, https://usegalaxy.org/published/workflow?id=64a329cf75834d6b, https://usegalaxy.org/published/workflow?id=64af2cd469fee16a, https://usegalaxy.org/published/workflow?id=653d553ac2fa51c8, https://usegalaxy.org/published/workflow?id=66e6b41f6c6d52b7, https://usegalaxy.org/published/workflow?id=672125473ec700bc, https://usegalaxy.org/published/workflow?id=672ca09dce4b0dc3, https://usegalaxy.org/published/workflow?id=676b88d0aac13fa5, https://usegalaxy.org/published/workflow?id=676fa9af68f6a763, https://usegalaxy.org/published/workflow?id=67992bf894a82587, https://usegalaxy.org/published/workflow?id=683e725f672b7d9b, https://usegalaxy.org/published/workflow?id=68495cc8ec3d46df, https://usegalaxy.org/published/workflow?id=68b995393b3142ec, https://usegalaxy.org/published/workflow?id=68be9cfc0c58cb44, https://usegalaxy.org/published/workflow?id=6960b8f6c98a9b9e, https://usegalaxy.org/published/workflow?id=69712265fdb10ed5, https://usegalaxy.org/published/workflow?id=69edab5d6ad91556, https://usegalaxy.org/published/workflow?id=6a174e7498434bd5, https://usegalaxy.org/published/workflow?id=6a2dace98986992a, https://usegalaxy.org/published/workflow?id=6b11d738ee57f245, https://usegalaxy.org/published/workflow?id=6b511b47176893e3, https://usegalaxy.org/published/workflow?id=6c68072bf72e6c4a, https://usegalaxy.org/published/workflow?id=6c95a357a3c1f399, https://usegalaxy.org/published/workflow?id=6d68f56abf9c624d, https://usegalaxy.org/published/workflow?id=6dada297572d77bd, https://usegalaxy.org/published/workflow?id=6db96a9c7e4b8d14, https://usegalaxy.org/published/workflow?id=6dcb43f86b9cd7dc, https://usegalaxy.org/published/workflow?id=6dfe0c6e87c6cb7b, https://usegalaxy.org/published/workflow?id=6e47a35cc5f2bdce, https://usegalaxy.org/published/workflow?id=6ea1bd64873b6c18, https://usegalaxy.org/published/workflow?id=6ec8b101d24a0f4f, https://usegalaxy.org/published/workflow?id=6ecfa8ce19ed86da, https://usegalaxy.org/published/workflow?id=6f2e4b4860413153, https://usegalaxy.org/published/workflow?id=6fa88ca75caba8e4, https://usegalaxy.org/published/workflow?id=7022c4d9af725e5c, https://usegalaxy.org/published/workflow?id=7072731b51e16923, https://usegalaxy.org/published/workflow?id=7090bb14a7af15bd, https://usegalaxy.org/published/workflow?id=70dacee3da375e2b, https://usegalaxy.org/published/workflow?id=70f9c7cc75a1d3c0, https://usegalaxy.org/published/workflow?id=716dc497d7d2e1c3, https://usegalaxy.org/published/workflow?id=7185085cbe953cd9, https://usegalaxy.org/published/workflow?id=72d134a60c694b59, https://usegalaxy.org/published/workflow?id=7321c6ad5425d347, https://usegalaxy.org/published/workflow?id=74c98eafd363cc2b, https://usegalaxy.org/published/workflow?id=75324d68ed124ff5, https://usegalaxy.org/published/workflow?id=7551458d929355c2, https://usegalaxy.org/published/workflow?id=75e23bc4e1ac2f5b, https://usegalaxy.org/published/workflow?id=75fffbce810acaf3, https://usegalaxy.org/published/workflow?id=761675cb2c9ad2ef, https://usegalaxy.org/published/workflow?id=7643e66a9b4e9c11, https://usegalaxy.org/published/workflow?id=769ec5a187095b38, https://usegalaxy.org/published/workflow?id=76b8ed1c68678b62, https://usegalaxy.org/published/workflow?id=76d5143860fac947, https://usegalaxy.org/published/workflow?id=76fb573f1372ae86, https://usegalaxy.org/published/workflow?id=76fff93650152579, https://usegalaxy.org/published/workflow?id=7757cd56fa4d060c, https://usegalaxy.org/published/workflow?id=778a8867b0a6ea4f, https://usegalaxy.org/published/workflow?id=77d1505c0dd65e26, https://usegalaxy.org/published/workflow?id=78249d353038002b, https://usegalaxy.org/published/workflow?id=7832cfdeabe47696, https://usegalaxy.org/published/workflow?id=786aa9e2bd723629, https://usegalaxy.org/published/workflow?id=789647a199e563fd, https://usegalaxy.org/published/workflow?id=79527e2b83fd5c64, https://usegalaxy.org/published/workflow?id=7a23e64dfa6957ce, https://usegalaxy.org/published/workflow?id=7a26069c2939bef9, https://usegalaxy.org/published/workflow?id=7a33bc2d0970b502, https://usegalaxy.org/published/workflow?id=7a4d834e794407d9, https://usegalaxy.org/published/workflow?id=7aa36b1722ff4c11, https://usegalaxy.org/published/workflow?id=7b9e17cb1d72d7e4, https://usegalaxy.org/published/workflow?id=7c3faadda8f89749, https://usegalaxy.org/published/workflow?id=7c4a2339b17a8930, https://usegalaxy.org/published/workflow?id=7cee34a6c06c21e4, https://usegalaxy.org/published/workflow?id=7d11026214dd8c93, https://usegalaxy.org/published/workflow?id=7d6617b8316cee19, https://usegalaxy.org/published/workflow?id=7dba74c915f63dc1, https://usegalaxy.org/published/workflow?id=7dde0721a382ea3e, https://usegalaxy.org/published/workflow?id=7df3246858cd83d1, https://usegalaxy.org/published/workflow?id=7e2651e5ed17e3db, https://usegalaxy.org/published/workflow?id=7e56bee496344ddc, https://usegalaxy.org/published/workflow?id=7e9269e78e989480, https://usegalaxy.org/published/workflow?id=7f6900852a81d121, https://usegalaxy.org/published/workflow?id=7fb4dae5daab0522, https://usegalaxy.org/published/workflow?id=803aec95399f7073, https://usegalaxy.org/published/workflow?id=8095deba606ebd5e, https://usegalaxy.org/published/workflow?id=8182055f5ef561f3, https://usegalaxy.org/published/workflow?id=81f1f0fd6d9235fd, https://usegalaxy.org/published/workflow?id=824730064b5014e5, https://usegalaxy.org/published/workflow?id=839cac17365affb7, https://usegalaxy.org/published/workflow?id=842c09b49c456429, https://usegalaxy.org/published/workflow?id=85011076892808e0, https://usegalaxy.org/published/workflow?id=85bc37a59a6ea443, https://usegalaxy.org/published/workflow?id=85e2a1d6b1d4e3d7, https://usegalaxy.org/published/workflow?id=864da6858d34df08, https://usegalaxy.org/published/workflow?id=868acaf49d0743ec, https://usegalaxy.org/published/workflow?id=870f4988a5cc815e, https://usegalaxy.org/published/workflow?id=8756aabc654b1050, https://usegalaxy.org/published/workflow?id=875ff758068e1c2f, https://usegalaxy.org/published/workflow?id=87756e064ab1e28a, https://usegalaxy.org/published/workflow?id=87c1bdc00b975377, https://usegalaxy.org/published/workflow?id=87d7a69106ca663d, https://usegalaxy.org/published/workflow?id=87eb1a8ee7a2c984, https://usegalaxy.org/published/workflow?id=87ebf1b5956a61b5, https://usegalaxy.org/published/workflow?id=885f0e66fa6b8790, https://usegalaxy.org/published/workflow?id=889b394b38b259eb, https://usegalaxy.org/published/workflow?id=88d0b64011c3148c, https://usegalaxy.org/published/workflow?id=88e10493f7e6b9d5, https://usegalaxy.org/published/workflow?id=8990ae43ae855bc7, https://usegalaxy.org/published/workflow?id=899f4f371b4c958c, https://usegalaxy.org/published/workflow?id=89f48993bb8f94bd, https://usegalaxy.org/published/workflow?id=89f52c97b3aee938, https://usegalaxy.org/published/workflow?id=8a15bda6ce7a63ec, https://usegalaxy.org/published/workflow?id=8a215695e7b57cf5, https://usegalaxy.org/published/workflow?id=8ae311282a0d27a1, https://usegalaxy.org/published/workflow?id=8b81b9a3b49bbf98, https://usegalaxy.org/published/workflow?id=8bcab83874cbc75c, https://usegalaxy.org/published/workflow?id=8bf608c6fd0dabd0, https://usegalaxy.org/published/workflow?id=8cbb9936e88d4f49, https://usegalaxy.org/published/workflow?id=8cf06b14037a8d5a, https://usegalaxy.org/published/workflow?id=8cfbaa14cff5a633, https://usegalaxy.org/published/workflow?id=8d605fbd33003d26, https://usegalaxy.org/published/workflow?id=8db9ccf14567d9ba, https://usegalaxy.org/published/workflow?id=8e1c6ad6ff623015, https://usegalaxy.org/published/workflow?id=8e2b2a40831dfb08, https://usegalaxy.org/published/workflow?id=8e509c87d143022c, https://usegalaxy.org/published/workflow?id=8e6d24a14d2908c2, https://usegalaxy.org/published/workflow?id=8e918c12d2f0d1fc, https://usegalaxy.org/published/workflow?id=8ebcae16a7822d93, https://usegalaxy.org/published/workflow?id=8f392d06d32bdf14, https://usegalaxy.org/published/workflow?id=907aaf55487ddf43, https://usegalaxy.org/published/workflow?id=90ed607bedd65524, https://usegalaxy.org/published/workflow?id=90f5b512997c70f8, https://usegalaxy.org/published/workflow?id=9124c2ec80b35680, https://usegalaxy.org/published/workflow?id=914ec4d8fc0022e4, https://usegalaxy.org/published/workflow?id=917e5a21d51a61ce, https://usegalaxy.org/published/workflow?id=91806144e90637e8, https://usegalaxy.org/published/workflow?id=918863756ce93725, https://usegalaxy.org/published/workflow?id=9192807702bc3de2, https://usegalaxy.org/published/workflow?id=91a4daecbb97d03e, https://usegalaxy.org/published/workflow?id=91ed290805f590de, https://usegalaxy.org/published/workflow?id=9255c0c9017b139f, https://usegalaxy.org/published/workflow?id=92aab10842ff610d, https://usegalaxy.org/published/workflow?id=931dd3e6b1fae4f5, https://usegalaxy.org/published/workflow?id=932b3bc10186f73e, https://usegalaxy.org/published/workflow?id=936ed7447c8e0a2d, https://usegalaxy.org/published/workflow?id=9373050c3ce80d56, https://usegalaxy.org/published/workflow?id=93bfbd7db42db543, https://usegalaxy.org/published/workflow?id=93c1fef4472aa7a8, https://usegalaxy.org/published/workflow?id=93cb976bd4ae546e, https://usegalaxy.org/published/workflow?id=93e69c7e7a857ca3, https://usegalaxy.org/published/workflow?id=94ab68d27de2e60f, https://usegalaxy.org/published/workflow?id=953d9cbe05e632a8, https://usegalaxy.org/published/workflow?id=958b64b05011d8c0, https://usegalaxy.org/published/workflow?id=958f78270fc8f55c, https://usegalaxy.org/published/workflow?id=961dac8100c6c70c, https://usegalaxy.org/published/workflow?id=962f784745c1b740, https://usegalaxy.org/published/workflow?id=96ae2544e22d34c5, https://usegalaxy.org/published/workflow?id=96cdba1fe599ada8, https://usegalaxy.org/published/workflow?id=9763787d7b102f39, https://usegalaxy.org/published/workflow?id=97c20a819394e381, https://usegalaxy.org/published/workflow?id=97dcd7285ebd5817, https://usegalaxy.org/published/workflow?id=98a4b90f7fc2bfce, https://usegalaxy.org/published/workflow?id=98b2ac8fc75781f8, https://usegalaxy.org/published/workflow?id=9938a81fb6911412, https://usegalaxy.org/published/workflow?id=995cc428eace3bc4, https://usegalaxy.org/published/workflow?id=9990b6e2facf6dca, https://usegalaxy.org/published/workflow?id=99ee567c092fb34c, https://usegalaxy.org/published/workflow?id=9adf8691809326e5, https://usegalaxy.org/published/workflow?id=9b384b774485b2f2, https://usegalaxy.org/published/workflow?id=9b5ae15bb9aaba48, https://usegalaxy.org/published/workflow?id=9bace540b35b1e61, https://usegalaxy.org/published/workflow?id=9bf1d223a57f88da, https://usegalaxy.org/published/workflow?id=9c688a2fc8d1bf4e, https://usegalaxy.org/published/workflow?id=9da9ddae8d5dc92f, https://usegalaxy.org/published/workflow?id=9db607d8d1cdcc25, https://usegalaxy.org/published/workflow?id=9ddfdc9d6cacea88, https://usegalaxy.org/published/workflow?id=9ded318097694dbc, https://usegalaxy.org/published/workflow?id=9e74e3455e47c813, https://usegalaxy.org/published/workflow?id=9e9a027e0c294a79, https://usegalaxy.org/published/workflow?id=9eb29b71d7effefc, https://usegalaxy.org/published/workflow?id=9ecfaa613a112d78, https://usegalaxy.org/published/workflow?id=9edc78f665579559, https://usegalaxy.org/published/workflow?id=9f1e8e82fb3e2033, https://usegalaxy.org/published/workflow?id=9f55643d3fd6f28c, https://usegalaxy.org/published/workflow?id=9fc9f1db50019929, https://usegalaxy.org/published/workflow?id=a124d41da896779c, https://usegalaxy.org/published/workflow?id=a164d857439a126f, https://usegalaxy.org/published/workflow?id=a17af8b7b2b39c1a, https://usegalaxy.org/published/workflow?id=a2046dd883227b49, https://usegalaxy.org/published/workflow?id=a2b4a868fa9795d1, https://usegalaxy.org/published/workflow?id=a37961bf3d435918, https://usegalaxy.org/published/workflow?id=a3ff7dbfadbd96e2, https://usegalaxy.org/published/workflow?id=a4a56efb37d845bf, https://usegalaxy.org/published/workflow?id=a5bdab0b219b3797, https://usegalaxy.org/published/workflow?id=a63d3ee4a2a4a20b, https://usegalaxy.org/published/workflow?id=a71fcbc60caae8b6, https://usegalaxy.org/published/workflow?id=a743746151101352, https://usegalaxy.org/published/workflow?id=a8a38b594183db2b, https://usegalaxy.org/published/workflow?id=a8b9252fad5fe06a, https://usegalaxy.org/published/workflow?id=a8e0f77cd6ef49f9, https://usegalaxy.org/published/workflow?id=a8e5adb65d064641, https://usegalaxy.org/published/workflow?id=a8f633b79b20c760, https://usegalaxy.org/published/workflow?id=a986e4991fc61c92, https://usegalaxy.org/published/workflow?id=a99a938953be5fd6, https://usegalaxy.org/published/workflow?id=aa9def6ec8f13b3a, https://usegalaxy.org/published/workflow?id=aadccbe72752c129, https://usegalaxy.org/published/workflow?id=ab0be4897d5355ac, https://usegalaxy.org/published/workflow?id=ab490af27c9ccc80, https://usegalaxy.org/published/workflow?id=ac87b6133de6a03f, https://usegalaxy.org/published/workflow?id=acada5044d64a30a, https://usegalaxy.org/published/workflow?id=acae55e8f37fea59, https://usegalaxy.org/published/workflow?id=ace738014a7278b0, https://usegalaxy.org/published/workflow?id=adb86df9061dca2b, https://usegalaxy.org/published/workflow?id=adbed5c956a71543, https://usegalaxy.org/published/workflow?id=adca3f2ca63730fe, https://usegalaxy.org/published/workflow?id=ae1de4267e4da154, https://usegalaxy.org/published/workflow?id=ae523fe6c9183e58, https://usegalaxy.org/published/workflow?id=ae5327f6f30b6138, https://usegalaxy.org/published/workflow?id=af5d714396856e9a, https://usegalaxy.org/published/workflow?id=af71519c81429287, https://usegalaxy.org/published/workflow?id=afb67b4b9952f57d, https://usegalaxy.org/published/workflow?id=afd7633a34d68704, https://usegalaxy.org/published/workflow?id=affdc1bf42475cc9, https://usegalaxy.org/published/workflow?id=b0b6dfa166b0d873, https://usegalaxy.org/published/workflow?id=b0e19e7315b64c87, https://usegalaxy.org/published/workflow?id=b11796364c22235e, https://usegalaxy.org/published/workflow?id=b19a9163c26f1270, https://usegalaxy.org/published/workflow?id=b1dc9cf054a63be5, https://usegalaxy.org/published/workflow?id=b232caf4a1e1b7ee, https://usegalaxy.org/published/workflow?id=b26501a4a85bfdeb, https://usegalaxy.org/published/workflow?id=b34ba9b2e4d8f050, https://usegalaxy.org/published/workflow?id=b3c8d64eca750ecf, https://usegalaxy.org/published/workflow?id=b5e8f4a0ff226921, https://usegalaxy.org/published/workflow?id=b63d1e1024cc3295, https://usegalaxy.org/published/workflow?id=b661fb850c4b4b01, https://usegalaxy.org/published/workflow?id=b6d535f210efa18e, https://usegalaxy.org/published/workflow?id=b73e416c06790ac5, https://usegalaxy.org/published/workflow?id=b78a75ae89ae4c79, https://usegalaxy.org/published/workflow?id=b7b69aaee5202144, https://usegalaxy.org/published/workflow?id=b7ec8d79dc563a93, https://usegalaxy.org/published/workflow?id=b86d24a103181742, https://usegalaxy.org/published/workflow?id=b893662378ed3da0, https://usegalaxy.org/published/workflow?id=b8ed069eea7879e7, https://usegalaxy.org/published/workflow?id=b93a475af82a3d36, https://usegalaxy.org/published/workflow?id=ba347b695dbff2ea, https://usegalaxy.org/published/workflow?id=ba5889301928907f, https://usegalaxy.org/published/workflow?id=badd4b56dbdeaba7, https://usegalaxy.org/published/workflow?id=bae2d6b436cd80ef, https://usegalaxy.org/published/workflow?id=bb1cb6abfe84a646, https://usegalaxy.org/published/workflow?id=bb25ac3ba4863424, https://usegalaxy.org/published/workflow?id=bbc894a79eb0e769, https://usegalaxy.org/published/workflow?id=bbe6f5a45ea5ee5e, https://usegalaxy.org/published/workflow?id=bcb798fb718968ce, https://usegalaxy.org/published/workflow?id=bceb6ae418bef9b8, https://usegalaxy.org/published/workflow?id=bd2ce9a97c1598df, https://usegalaxy.org/published/workflow?id=bd355e8ce58a139e, https://usegalaxy.org/published/workflow?id=bd3bed78eb99e294, https://usegalaxy.org/published/workflow?id=bd6bfd338ffb9637, https://usegalaxy.org/published/workflow?id=be46c5bb8c06a470, https://usegalaxy.org/published/workflow?id=be7dab2274c1acdd, https://usegalaxy.org/published/workflow?id=bf3ccae8d5b6ef58, https://usegalaxy.org/published/workflow?id=bf3f71a748d88490, https://usegalaxy.org/published/workflow?id=bfd2e7e63d3e6856, https://usegalaxy.org/published/workflow?id=bfef75672b9c3ea4, https://usegalaxy.org/published/workflow?id=c0746df296544a3a, https://usegalaxy.org/published/workflow?id=c07476a937b4e52e, https://usegalaxy.org/published/workflow?id=c092a3631d68ce38, https://usegalaxy.org/published/workflow?id=c0a108e53ab05b0d, https://usegalaxy.org/published/workflow?id=c0a9a2d53b8660de, https://usegalaxy.org/published/workflow?id=c12e6b7896f8e114, https://usegalaxy.org/published/workflow?id=c1339c998a55431c, https://usegalaxy.org/published/workflow?id=c156e67ad1ae4a97, https://usegalaxy.org/published/workflow?id=c1ec12905944ca7b, https://usegalaxy.org/published/workflow?id=c20a68563e80d401, https://usegalaxy.org/published/workflow?id=c24cfddfc88a97a3, https://usegalaxy.org/published/workflow?id=c2898d28a3b380d6, https://usegalaxy.org/published/workflow?id=c30bfd545ef3a228, https://usegalaxy.org/published/workflow?id=c30f6ca171896908, https://usegalaxy.org/published/workflow?id=c478d8de43a3f30f, https://usegalaxy.org/published/workflow?id=c4ac09605633655c, https://usegalaxy.org/published/workflow?id=c57f70d686b6062e, https://usegalaxy.org/published/workflow?id=c5f4b7b2463f338b, https://usegalaxy.org/published/workflow?id=c66e2738f37a8c16, https://usegalaxy.org/published/workflow?id=c69f8c26ec5fb8a6, https://usegalaxy.org/published/workflow?id=c707871e1dc9e21d, https://usegalaxy.org/published/workflow?id=c712b85a55da2a2d, https://usegalaxy.org/published/workflow?id=c74e3a24751d9924, https://usegalaxy.org/published/workflow?id=c75acc1ab44c121f, https://usegalaxy.org/published/workflow?id=c75fcf2b7ba057fd, https://usegalaxy.org/published/workflow?id=c7b2d2ccc4b0dec5, https://usegalaxy.org/published/workflow?id=c81833a367445f98, https://usegalaxy.org/published/workflow?id=c9474fcce2a21188, https://usegalaxy.org/published/workflow?id=c96b12be162f744b, https://usegalaxy.org/published/workflow?id=c983ea8a32662cd6, https://usegalaxy.org/published/workflow?id=ca36eebd59575df3, https://usegalaxy.org/published/workflow?id=cb011900fc0ee12a, https://usegalaxy.org/published/workflow?id=cbbd7e95041d9429, https://usegalaxy.org/published/workflow?id=cd4b5b62f1eed51b, https://usegalaxy.org/published/workflow?id=cd4d88429f096fbc, https://usegalaxy.org/published/workflow?id=cd5f803c80875b9c, https://usegalaxy.org/published/workflow?id=cd824d8631d6a55e, https://usegalaxy.org/published/workflow?id=cdea4f88ccbd155f, https://usegalaxy.org/published/workflow?id=cdf5dffbed938d49, https://usegalaxy.org/published/workflow?id=ce815d36cbb57304, https://usegalaxy.org/published/workflow?id=cf2dbc29ca20ebee, https://usegalaxy.org/published/workflow?id=cf3320614654adfe, https://usegalaxy.org/published/workflow?id=cfa7c3d7e69e91d7, https://usegalaxy.org/published/workflow?id=d00ac64dcd07f91a, https://usegalaxy.org/published/workflow?id=d02b4d7483936b73, https://usegalaxy.org/published/workflow?id=d08135fa13d1745e, https://usegalaxy.org/published/workflow?id=d2759906e4124964, https://usegalaxy.org/published/workflow?id=d2dec03b33af1b2f, https://usegalaxy.org/published/workflow?id=d2f7fd589a91124a, https://usegalaxy.org/published/workflow?id=d341660f3d1ce8bf, https://usegalaxy.org/published/workflow?id=d3428dd172a78102, https://usegalaxy.org/published/workflow?id=d3704f2927e3065e, https://usegalaxy.org/published/workflow?id=d4029ce1344e874a, https://usegalaxy.org/published/workflow?id=d4ea6cdd40522eb1, https://usegalaxy.org/published/workflow?id=d4f0a7ccb09f1e55, https://usegalaxy.org/published/workflow?id=d5062ef48aa246d8, https://usegalaxy.org/published/workflow?id=d6cf3be79a4b7db4, https://usegalaxy.org/published/workflow?id=d768a4a06d3b1a90, https://usegalaxy.org/published/workflow?id=d817e98cef94bc96, https://usegalaxy.org/published/workflow?id=d82db9c29b998f22, https://usegalaxy.org/published/workflow?id=d86b28c8c2e0e64d, https://usegalaxy.org/published/workflow?id=d903c7215a88c79f, https://usegalaxy.org/published/workflow?id=d96bd5c9fb553f2c, https://usegalaxy.org/published/workflow?id=d9840d6ecf2b4d2f, https://usegalaxy.org/published/workflow?id=daaded719dcfd53b, https://usegalaxy.org/published/workflow?id=db01ac5b0dc50cd4, https://usegalaxy.org/published/workflow?id=dbc650d226e89013, https://usegalaxy.org/published/workflow?id=dc006ebf798f1f2f, https://usegalaxy.org/published/workflow?id=dc7f05cb5a62da77, https://usegalaxy.org/published/workflow?id=dcf658333596d76a, https://usegalaxy.org/published/workflow?id=ddf222b797082436, https://usegalaxy.org/published/workflow?id=de208a900880dcdc, https://usegalaxy.org/published/workflow?id=de24e5678f541584, https://usegalaxy.org/published/workflow?id=de29cd965a2e93d3, https://usegalaxy.org/published/workflow?id=deea71ccac30c7ea, https://usegalaxy.org/published/workflow?id=df24d76ebf13e3c1, https://usegalaxy.org/published/workflow?id=df8b49863e83824d, https://usegalaxy.org/published/workflow?id=dfa8c64634aec75c, https://usegalaxy.org/published/workflow?id=dff3cf6921b3d4d6, https://usegalaxy.org/published/workflow?id=e035be74e3c85bf5, https://usegalaxy.org/published/workflow?id=e0ec503626fa0d58, https://usegalaxy.org/published/workflow?id=e12296df7cf33c69, https://usegalaxy.org/published/workflow?id=e12324f5e3b930fd, https://usegalaxy.org/published/workflow?id=e1aad86fdf9e6616, https://usegalaxy.org/published/workflow?id=e282f505ba9f729f, https://usegalaxy.org/published/workflow?id=e31abcc04c5c69bc, https://usegalaxy.org/published/workflow?id=e325b97b81b10edb, https://usegalaxy.org/published/workflow?id=e33f6a058c5f57e5, https://usegalaxy.org/published/workflow?id=e42a07b777c9f9dc, https://usegalaxy.org/published/workflow?id=e4dd39237df58884, https://usegalaxy.org/published/workflow?id=e500078649dd026c, https://usegalaxy.org/published/workflow?id=e53b695ff681b675, https://usegalaxy.org/published/workflow?id=e55ca98817c1855e, https://usegalaxy.org/published/workflow?id=e58a87508a337b91, https://usegalaxy.org/published/workflow?id=e5f79f576548f7c5, https://usegalaxy.org/published/workflow?id=e64a6119053cb126, https://usegalaxy.org/published/workflow?id=e67b6da41e1e6932, https://usegalaxy.org/published/workflow?id=e745c45651d829b8, https://usegalaxy.org/published/workflow?id=e7586d70715207b5, https://usegalaxy.org/published/workflow?id=e7ce46762faccaac, https://usegalaxy.org/published/workflow?id=e7fa48d7fd40908b, https://usegalaxy.org/published/workflow?id=e817b5b275b4952f, https://usegalaxy.org/published/workflow?id=e899acc664c8b808, https://usegalaxy.org/published/workflow?id=e9927c058ec0661f, https://usegalaxy.org/published/workflow?id=e9aaa56af9d230d6, https://usegalaxy.org/published/workflow?id=e9f4de639f4cfe02, https://usegalaxy.org/published/workflow?id=e9ffad95baa43478, https://usegalaxy.org/published/workflow?id=ea248022a4217e0e, https://usegalaxy.org/published/workflow?id=ea4c2defce2f5258, https://usegalaxy.org/published/workflow?id=ea5d2401f6711dff, https://usegalaxy.org/published/workflow?id=ea61cd21e3fbad2b, https://usegalaxy.org/published/workflow?id=eab7347464872b4c, https://usegalaxy.org/published/workflow?id=eae5ae951abe6761, https://usegalaxy.org/published/workflow?id=eafe4aa62a600e1d, https://usegalaxy.org/published/workflow?id=eb3409cc73e392a8, https://usegalaxy.org/published/workflow?id=eb4b32fcf4a9f64a, https://usegalaxy.org/published/workflow?id=eb4f7dbca0114270, https://usegalaxy.org/published/workflow?id=ebe7f93204402a5a, https://usegalaxy.org/published/workflow?id=ec2f77224324f22e, https://usegalaxy.org/published/workflow?id=ec66767cab0022ee, https://usegalaxy.org/published/workflow?id=edf9be785ab9eb65, https://usegalaxy.org/published/workflow?id=ee27581327d147da, https://usegalaxy.org/published/workflow?id=ee3b8d7ba29da11c, https://usegalaxy.org/published/workflow?id=ef6036efe8a03a12, https://usegalaxy.org/published/workflow?id=efe7ca87323773c0, https://usegalaxy.org/published/workflow?id=f062eda543541ba8, https://usegalaxy.org/published/workflow?id=f0ee8bcd7c8fadca, https://usegalaxy.org/published/workflow?id=f18946db4c93e88b, https://usegalaxy.org/published/workflow?id=f1a54b10d4afce8f, https://usegalaxy.org/published/workflow?id=f1c2d920bd41cebb, https://usegalaxy.org/published/workflow?id=f29d1bcfeaacba04, https://usegalaxy.org/published/workflow?id=f2d3abc6c45c4839, https://usegalaxy.org/published/workflow?id=f3aba99a8204081e, https://usegalaxy.org/published/workflow?id=f3b417763495221b, https://usegalaxy.org/published/workflow?id=f3c8093c5b8a7233, https://usegalaxy.org/published/workflow?id=f5200b7bcceed5d6, https://usegalaxy.org/published/workflow?id=f5805e66642fed04, https://usegalaxy.org/published/workflow?id=f58aa85ceaa19534, https://usegalaxy.org/published/workflow?id=f5bd2da36ab0a870, https://usegalaxy.org/published/workflow?id=f733ad0a6cc50cb9, https://usegalaxy.org/published/workflow?id=f765c8aa4bc3176c, https://usegalaxy.org/published/workflow?id=f794b4b9bb990c80, https://usegalaxy.org/published/workflow?id=f7975ae799daf463, https://usegalaxy.org/published/workflow?id=f7a3567ba6b57c9c, https://usegalaxy.org/published/workflow?id=f8d85cda81baa77d, https://usegalaxy.org/published/workflow?id=f8ed1ae9d501bb87, https://usegalaxy.org/published/workflow?id=f926e70bee242785, https://usegalaxy.org/published/workflow?id=f93b5864d6d2659c, https://usegalaxy.org/published/workflow?id=f9cd2289c007f103, https://usegalaxy.org/published/workflow?id=fa226c044fa026ef, https://usegalaxy.org/published/workflow?id=fa26fd51caea53c7, https://usegalaxy.org/published/workflow?id=fb588edfd343b24d, https://usegalaxy.org/published/workflow?id=fb903de4aa4d5090, https://usegalaxy.org/published/workflow?id=fc130cb411aa7d06, https://usegalaxy.org/published/workflow?id=fc7b14aafa0b421e, https://usegalaxy.org/published/workflow?id=fcae9dfcdca70798, https://usegalaxy.org/published/workflow?id=fcbd4767298488b9, https://usegalaxy.org/published/workflow?id=fcbe12fc4eaae12e, https://usegalaxy.org/published/workflow?id=fce1837144d3a86e, https://usegalaxy.org/published/workflow?id=fd40e50c9f1545ce, https://usegalaxy.org/published/workflow?id=fd75347cfea06651, https://usegalaxy.org/published/workflow?id=fda29ba2b6c98f8b, https://usegalaxy.org/published/workflow?id=fe4c2791508c56ab, https://usegalaxy.org/published/workflow?id=ff35347c4e2f0e81, https://usegalaxy.org/published/workflow?id=ffae9c47980a5170, https://usegalaxy.org/published/workflow?id=fff1a5c7475b3eeb, https://workflowhub.eu/workflows/1035?version=1, https://workflowhub.eu/workflows/1061?version=1, https://workflowhub.eu/workflows/110?version=11, https://workflowhub.eu/workflows/111?version=5, https://workflowhub.eu/workflows/112?version=6, https://workflowhub.eu/workflows/113?version=4, https://workflowhub.eu/workflows/1190?version=1, https://workflowhub.eu/workflows/1271?version=3, https://workflowhub.eu/workflows/1272?version=2, https://workflowhub.eu/workflows/1352?version=3, https://workflowhub.eu/workflows/1444?version=2, https://workflowhub.eu/workflows/1466?version=2, https://workflowhub.eu/workflows/1473?version=1, https://workflowhub.eu/workflows/1492?version=2, https://workflowhub.eu/workflows/1534?version=1, https://workflowhub.eu/workflows/1540?version=1, https://workflowhub.eu/workflows/155?version=5, https://workflowhub.eu/workflows/1562?version=1, https://workflowhub.eu/workflows/1585?version=1, https://workflowhub.eu/workflows/1598?version=1, https://workflowhub.eu/workflows/1612?version=1, https://workflowhub.eu/workflows/1616?version=1, https://workflowhub.eu/workflows/1622?version=1, https://workflowhub.eu/workflows/1640?version=1, https://workflowhub.eu/workflows/1642?version=1, https://workflowhub.eu/workflows/1647?version=1, https://workflowhub.eu/workflows/1651?version=1, https://workflowhub.eu/workflows/1657?version=1, https://workflowhub.eu/workflows/1661?version=1, https://workflowhub.eu/workflows/1665?version=1, https://workflowhub.eu/workflows/1668?version=1, https://workflowhub.eu/workflows/1675?version=1, https://workflowhub.eu/workflows/1678?version=1, https://workflowhub.eu/workflows/1688?version=1, https://workflowhub.eu/workflows/1692?version=1, https://workflowhub.eu/workflows/1695?version=1, https://workflowhub.eu/workflows/1715?version=1, https://workflowhub.eu/workflows/1716?version=1, https://workflowhub.eu/workflows/1717?version=1, https://workflowhub.eu/workflows/222?version=1, https://workflowhub.eu/workflows/346?version=1, https://workflowhub.eu/workflows/347?version=1, https://workflowhub.eu/workflows/351?version=1, https://workflowhub.eu/workflows/353?version=1, https://workflowhub.eu/workflows/357?version=1, https://workflowhub.eu/workflows/35?version=1, https://workflowhub.eu/workflows/36?version=1, https://workflowhub.eu/workflows/37?version=1, https://workflowhub.eu/workflows/38?version=1, https://workflowhub.eu/workflows/394?version=1, https://workflowhub.eu/workflows/395?version=15, https://workflowhub.eu/workflows/397?version=14, https://workflowhub.eu/workflows/398?version=15, https://workflowhub.eu/workflows/399?version=19, https://workflowhub.eu/workflows/39?version=1, https://workflowhub.eu/workflows/400?version=12, https://workflowhub.eu/workflows/401?version=13, https://workflowhub.eu/workflows/40?version=1, https://workflowhub.eu/workflows/439?version=3, https://workflowhub.eu/workflows/519?version=1, https://workflowhub.eu/workflows/561?version=11, https://workflowhub.eu/workflows/601?version=2, https://workflowhub.eu/workflows/602?version=2, https://workflowhub.eu/workflows/612?version=23, https://workflowhub.eu/workflows/625?version=23, https://workflowhub.eu/workflows/628?version=1, https://workflowhub.eu/workflows/641?version=25, https://workflowhub.eu/workflows/642?version=23, https://workflowhub.eu/workflows/676?version=1, https://workflowhub.eu/workflows/688?version=1, https://workflowhub.eu/workflows/876?version=1 |
assembly/assembly-with-preprocessing, assembly/general-introduction, assembly/largegenome, assembly/unicycler-assembly, contributing/create-new-tutorial-content, ecology/ENA_Biodiv_submission, ecology/ref-based-rad-seq, epigenetics/cut_and_run, galaxy-interface/workflow-fairification, genome-annotation/crispr-screen, introduction/galaxy-intro-ngs-data-managment, introduction/vsi_qc, microbiome/metatranscriptomics, microbiome/metatranscriptomics-short, microbiome/nanopore-16S-metagenomics, microbiome/pathogen-detection-from-nanopore-foodborne-data, sequence-analysis/mapping, sequence-analysis/quality-control, single-cell/scrna-preprocessing, single-cell/scrna-preprocessing-tenx, transcriptomics/differential-isoform-expression, transcriptomics/full-de-novo, transcriptomics/minerva-pathways, transcriptomics/mirna-target-finder, transcriptomics/ref-based, transcriptomics/rna-seq-reads-to-counts, variant-analysis/exome-seq, variant-analysis/sars-cov-2, variant-analysis/somatic-variant-discovery, variant-analysis/somatic-variants, variant-analysis/tb-variant-analysis |
|
mummer4 |
mummer_delta_filter, mummer_dnadiff, mummer_mummer, mummer_mummerplot, mummer_nucmer, mummer_show_coords |
Mummer4 Tools |
2018-06-28 |
https://github.com/mummer4/mummer |
4.0.0 |
mummer4 |
4.0.1 |
To update |
Sequence Analysis |
Multiple sequence alignment |
Multiple sequence alignment |
Sequence analysis, Human genetics |
Sequence analysis, Human genetics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/mummer4 |
mummer4 |
MUMmer4 |
System for rapidly aligning large DNA sequences to one another. |
|
6 |
6 |
6 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
6 |
6 |
0 |
745 |
793 |
23211 |
24159 |
1464 |
1466 |
31301 |
31322 |
258 |
258 |
9228 |
9228 |
14 |
14 |
388 |
388 |
65097 |
64128 |
2531 |
2481 |
https://usegalaxy.eu/published/workflow?id=1f88311a8e365c17, https://usegalaxy.eu/published/workflow?id=35629b113a6f23ab, https://usegalaxy.fr/published/workflow?id=ce4acd38084ee9ef |
|
|
muon |
cluster_analyze_embed_muon, mudata_import_export, plot_muon, preprocess_muon |
muon is a Python framework for multimodal omics analysis |
2024-03-15 |
https://muon.readthedocs.io |
0.1.6 |
muon |
|
To update |
Single Cell, Sequence Analysis, Transcriptomics, Epigenetics |
|
|
Cell biology, Single-cell sequencing, Gene expression, Epigenetics, Multiomics |
Cell biology, Gene expression, Epigenetics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/muon/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/muon |
muon |
muon |
muon is a Python framework for multimodal omics analysis. |
|
0 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
mykrobe |
mykrobe_predict |
Antibiotic resistance predictions |
2017-12-18 |
https://github.com/Mykrobe-tools/mykrobe |
0.10.0 |
mykrobe |
0.13.0 |
To update |
Sequence Analysis |
Antimicrobial resistance prediction, Variant calling, Genotyping, Sequence trimming |
Antimicrobial resistance prediction, Variant calling, Genotyping, Sequence trimming |
Whole genome sequencing, Genotype and phenotype, Probes and primers, Genetic variation, Metagenomics |
Whole genome sequencing, Genotype and phenotype, Probes and primers, Genetic variation, Metagenomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/mykrobe |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/mykrobe |
Mykrobe |
Mykrobe |
Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe.Antibiotic resistance prediction in minutes.Table of Contents generated with DocToc.AMR prediction (Mykrobe predictor).Before attempting to install with bioconda, please ensure you have your channels set up as specified in the documentation. If you don't, you may run into issues with an older version of mykrobe being installed |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
mzmine_batch |
mzmine_batch |
mass-spectrometry data processing, with the main focus on LC-MS data |
2023-10-21 |
http://mzmine.github.io/ |
3.9.0 |
mzmine |
4.7.29 |
To update |
Metabolomics |
Natural product identification, Standardisation and normalisation, Peptide database search, Deisotoping, Clustering, Filtering, Chromatographic alignment, Peak detection, Peptide identification, Chromatogram visualisation, Mass spectrum visualisation, Structure visualisation, Plotting, Heat map generation |
Natural product identification, Standardisation and normalisation, Peptide database search, Deisotoping, Clustering, Filtering, Chromatographic alignment, Peak detection, Peptide identification, Chromatogram visualisation, Mass spectrum visualisation, Structure visualisation, Plotting, Heat map generation |
Proteomics, Metabolomics, Proteomics experiment, Small molecules |
Proteomics, Metabolomics, Proteomics experiment, Small molecules |
iuc |
https://github.com/workflow4metabolomics/tools-metabolomics/blob/master/tools/mzmine/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/mzmine |
mzmine |
MZmine |
Toolbox for visualization and analysis of LC-MS data in netCDF or mzXML. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
6 |
11 |
11 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
11 |
6 |
6 |
|
|
|
naltorfs |
bicodon_counts_from_fasta, codon_freq_from_bicodons, find_nested_alt_orfs |
nAlt-ORFs: Nested Alternate Open Reading Frames (nAltORFs) |
2022-04-11 |
https://github.com/BlankenbergLab/nAltORFs |
0.1.2 |
naltorfs |
0.1.2 |
Up-to-date |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/naltorfs |
|
|
|
|
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
50 |
50 |
228 |
228 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
228 |
228 |
50 |
50 |
|
|
|
nanocomp |
nanocomp |
Compare multiple runs of long read sequencing data and alignments |
2025-05-21 |
https://github.com/wdecoster/NanoComp |
1.25.3 |
nanocomp |
1.25.4 |
To update |
Visualization, Statistics, Fastq Manipulation |
Box-Whisker plot plotting, Visualisation, Multiple sample visualisation |
Box-Whisker plot plotting, Multiple sample visualisation |
Nucleic acids, Bioinformatics |
Nucleic acids, Bioinformatics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/nanocomp/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/nanocomp |
nanocomp |
nanocomp |
Compare multiple runs of long read sequencing data and alignments. Creates violin plots or box plots of length, quality and percent identity and creates dynamic, overlaying read length histograms and a cumulative yield plot. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
nanocompore |
nanocompore_db, nanocompore_sampcomp |
Nanocompore compares 2 ONT nanopore direct RNA sequencing datasets from different experimental conditions expected to have a significant impact on RNA modifications. It is recommended to have at least 2 replicates per condition. For example one can use a control condition with a significantly reduced number of modifications such as a cell line for which a modification writing enzyme was knocked-down or knocked-out. Alternatively, on a smaller scale transcripts of interests could be synthesized in-vitro. |
2020-04-27 |
https://nanocompore.rna.rocks/ |
1.0.0rc3.post2 |
nanocompore |
1.0.4 |
To update |
Sequence Analysis |
Post-translation modification site prediction, PolyA signal detection, Genotyping, k-mer counting |
PolyA signal detection, Genotyping, k-mer counting |
Functional, regulatory and non-coding RNA, RNA-Seq, Gene transcripts, Transcriptomics, Transcription factors and regulatory sites |
Functional, regulatory and non-coding RNA, RNA-Seq, Gene transcripts, Transcriptomics, Transcription factors and regulatory sites |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/nanocompore |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/nanocompore |
Nanocompore |
Nanocompore |
RNA modifications detection by comparative Nanopore direct RNA sequencing.RNA modifications detection from Nanopore dRNA-Seq data.Nanocompore identifies differences in ONT nanopore sequencing raw signal corresponding to RNA modifications by comparing 2 samples.Analyses performed for the nanocompore paper.Nanocompore compares 2 ONT nanopore direct RNA sequencing datasets from different experimental conditions expected to have a significant impact on RNA modifications. It is recommended to have at least 2 replicates per condition. For example one can use a control condition with a significantly reduced number of modifications such as a cell line for which a modification writing enzyme was knocked-down or knocked-out. Alternatively, on a smaller scale transcripts of interests could be synthesized in-vitro |
|
0 |
1 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
7 |
7 |
839 |
839 |
0 |
0 |
0 |
0 |
5 |
5 |
311 |
311 |
0 |
0 |
0 |
0 |
1150 |
1150 |
12 |
12 |
https://usegalaxy.eu/published/workflow?id=778923dd04996e07, https://usegalaxy.eu/published/workflow?id=77db45ad90b4033d |
|
|
nanoplot |
nanoplot |
Plotting tool for long read sequencing data and alignments |
2018-09-24 |
https://github.com/wdecoster/NanoPlot |
1.46.1 |
nanoplot |
1.46.1 |
Up-to-date |
Visualization |
Scatter plot plotting, Box-Whisker plot plotting |
Scatter plot plotting, Box-Whisker plot plotting |
Genomics |
Genomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/nanoplot/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/nanoplot |
nanoplot |
NanoPlot |
NanoPlot is a tool with various visualizations of sequencing data in bam, cram, fastq, fasta or platform-specific TSV summaries, mainly intended for long-read sequencing from Oxford Nanopore Technologies and Pacific Biosciences |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
6324 |
6460 |
115539 |
118033 |
4110 |
4112 |
52272 |
52277 |
2429 |
2436 |
19724 |
19938 |
281 |
281 |
3680 |
3680 |
193928 |
191215 |
13289 |
13144 |
https://dev.workflowhub.eu/workflows/1005?version=1, https://dev.workflowhub.eu/workflows/1087?version=2, https://dev.workflowhub.eu/workflows/1107?version=1, https://dev.workflowhub.eu/workflows/1132?version=2, https://dev.workflowhub.eu/workflows/1139?version=1, https://dev.workflowhub.eu/workflows/1162?version=2, https://dev.workflowhub.eu/workflows/1178?version=1, https://dev.workflowhub.eu/workflows/1197?version=2, https://dev.workflowhub.eu/workflows/132?version=1, https://dev.workflowhub.eu/workflows/38?version=1, https://usegalaxy.eu/published/workflow?id=0bafeb17c21ebc9c, https://usegalaxy.eu/published/workflow?id=14714876dda7186d, https://usegalaxy.eu/published/workflow?id=152223c8aed27357, https://usegalaxy.eu/published/workflow?id=181e751be8dd9abc, https://usegalaxy.eu/published/workflow?id=249c115413f17f28, https://usegalaxy.eu/published/workflow?id=3081569659a45b9e, https://usegalaxy.eu/published/workflow?id=32d2f5340098bcbd, https://usegalaxy.eu/published/workflow?id=344cd3a3c2ce5302, https://usegalaxy.eu/published/workflow?id=34a07bf6407510ef, https://usegalaxy.eu/published/workflow?id=39837ca09374598b, https://usegalaxy.eu/published/workflow?id=44e53ea319e07daa, https://usegalaxy.eu/published/workflow?id=49ce9e738fadef4a, https://usegalaxy.eu/published/workflow?id=4ddbffe4b3fef275, https://usegalaxy.eu/published/workflow?id=57cfe5062c8e01bf, https://usegalaxy.eu/published/workflow?id=57d3109f32defa3b, https://usegalaxy.eu/published/workflow?id=5826e573b6f93762, https://usegalaxy.eu/published/workflow?id=86cf02cc0868d238, https://usegalaxy.eu/published/workflow?id=889f2782ad82bd69, https://usegalaxy.eu/published/workflow?id=968f0ac2617aa524, https://usegalaxy.eu/published/workflow?id=a337bfb2eb1e583f, https://usegalaxy.eu/published/workflow?id=a705370bc2c13d5c, https://usegalaxy.eu/published/workflow?id=a84bac86ec183d46, https://usegalaxy.eu/published/workflow?id=ab646c6ab6de7061, https://usegalaxy.eu/published/workflow?id=b4de76c0a4d0e23a, https://usegalaxy.eu/published/workflow?id=bf48b0eb15e8ff75, https://usegalaxy.eu/published/workflow?id=c3bfedf33bb00069, https://usegalaxy.eu/published/workflow?id=c48807045e258dd8, https://usegalaxy.eu/published/workflow?id=c9ef2d2ce92e2dfb, https://usegalaxy.eu/published/workflow?id=cf8591391a17a914, https://usegalaxy.eu/published/workflow?id=d0ae255151450dad, https://usegalaxy.eu/published/workflow?id=dc7107896a3f2964, https://usegalaxy.eu/published/workflow?id=dd3193aaaf08e798, https://usegalaxy.eu/published/workflow?id=ea485dbabc76488d, https://usegalaxy.eu/published/workflow?id=eb5ab8bc82569eee, https://usegalaxy.eu/published/workflow?id=ecf48fa50af560a0, https://usegalaxy.eu/published/workflow?id=fc0b9efa7d2e61e6, https://usegalaxy.fr/published/workflow?id=776ef2fa51094ba6, https://usegalaxy.org.au/published/workflow?id=03b090e75c61c1c3, https://usegalaxy.org.au/published/workflow?id=143d4cc586aff5a0, https://usegalaxy.org.au/published/workflow?id=22bd45f60c60a338, https://usegalaxy.org.au/published/workflow?id=24f0d1f7a28756b5, https://usegalaxy.org.au/published/workflow?id=25d52afddaa3451b, https://usegalaxy.org.au/published/workflow?id=2cb16d321a804b1a, https://usegalaxy.org.au/published/workflow?id=2e29b21cdec7d0cc, https://usegalaxy.org.au/published/workflow?id=35f39173f0ac9179, https://usegalaxy.org.au/published/workflow?id=3ac73a2f00423326, https://usegalaxy.org.au/published/workflow?id=3efbc617883dd1af, https://usegalaxy.org.au/published/workflow?id=4871f853090e8be8, https://usegalaxy.org.au/published/workflow?id=4ff39e947c470103, https://usegalaxy.org.au/published/workflow?id=5169ba49122ad39a, https://usegalaxy.org.au/published/workflow?id=557601292ea0f6f3, https://usegalaxy.org.au/published/workflow?id=69d91340fc7effa2, https://usegalaxy.org.au/published/workflow?id=7c343e5b55474d19, https://usegalaxy.org.au/published/workflow?id=8ded019070c6687b, https://usegalaxy.org.au/published/workflow?id=8fe84de499e96485, https://usegalaxy.org.au/published/workflow?id=9c60b83feaa22415, https://usegalaxy.org.au/published/workflow?id=a804d976d351f2fc, https://usegalaxy.org.au/published/workflow?id=b164468b137b73b9, https://usegalaxy.org.au/published/workflow?id=b5403e4fff2961f9, https://usegalaxy.org.au/published/workflow?id=b59fada651043735, https://usegalaxy.org.au/published/workflow?id=b7aa22291322e505, https://usegalaxy.org.au/published/workflow?id=bf80ef6e5f37deb7, https://usegalaxy.org.au/published/workflow?id=c9b7de574fb2f2d5, https://usegalaxy.org.au/published/workflow?id=d69a765cfc82a399, https://usegalaxy.org.au/published/workflow?id=d9571b3dfef34e5e, https://usegalaxy.org.au/published/workflow?id=e7c5dfc703f66403, https://usegalaxy.org.au/published/workflow?id=f9719e48b907f35c, https://usegalaxy.org.au/published/workflow?id=fc3c83b11f527977, https://usegalaxy.org.au/published/workflow?id=fc664a96d8099652, https://usegalaxy.org/published/workflow?id=00381bbae3fd7e78, https://usegalaxy.org/published/workflow?id=21161075002d6778, https://usegalaxy.org/published/workflow?id=34f706b7d4e61f44, https://usegalaxy.org/published/workflow?id=4458439388155d92, https://usegalaxy.org/published/workflow?id=547f86db467bf620, https://usegalaxy.org/published/workflow?id=574e42683dc3961b, https://usegalaxy.org/published/workflow?id=a8b9252fad5fe06a, https://usegalaxy.org/published/workflow?id=b7817a12dbee583c, https://usegalaxy.org/published/workflow?id=bff206b4625375bc, https://usegalaxy.org/published/workflow?id=c3ea8fa3bb202dc6, https://usegalaxy.org/published/workflow?id=cfa9e6e722b086c8, https://usegalaxy.org/published/workflow?id=e12324f5e3b930fd, https://workflowhub.eu/workflows/1061?version=1, https://workflowhub.eu/workflows/1477?version=1, https://workflowhub.eu/workflows/1492?version=2, https://workflowhub.eu/workflows/1585?version=1, https://workflowhub.eu/workflows/1612?version=1, https://workflowhub.eu/workflows/1613?version=1, https://workflowhub.eu/workflows/1616?version=1, https://workflowhub.eu/workflows/1617?version=1, https://workflowhub.eu/workflows/222?version=1, https://workflowhub.eu/workflows/406?version=1, https://workflowhub.eu/workflows/521?version=1, https://workflowhub.eu/workflows/697?version=1 |
assembly/assembly-with-preprocessing, assembly/chloroplast-assembly, assembly/largegenome, assembly/mrsa-nanopore, microbiome/pathogen-detection-from-nanopore-foodborne-data, microbiome/plasmid-metagenomics-nanopore, sequence-analysis/quality-control |
|
nanopolishcomp |
nanopolishcomp_eventaligncollapse, nanopolishcomp_freqmethcalculate |
NanopolishComp contains 2 modules. Eventalign_collapse collapses the raw file generated by nanopolish eventalign by kmers rather than by event. Freq_meth_calculate methylation frequency at genomic CpG sites from the output of nanopolish call-methylation. |
2020-04-27 |
https://a-slide.github.io/NanopolishComp |
0.6.11 |
nanopolishcomp |
0.6.12 |
To update |
Sequence Analysis |
Methylation analysis, Collapsing methods |
Methylation analysis, Collapsing methods |
Sequence analysis, Sequencing, Genetic variation |
Sequence analysis, Sequencing, Genetic variation |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/nanopolishcomp |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/nanopolishcomp |
nanopolishcomp |
NanopolishComp |
NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files.It is a companion package for Nanopolish. |
|
0 |
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
35 |
35 |
1119 |
1119 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
1120 |
1120 |
36 |
36 |
https://usegalaxy.eu/published/workflow?id=77db45ad90b4033d |
|
|
ncbi_acc_download |
ncbi_acc_download |
Download sequences from GenBank/RefSeq by accession through the NCBI ENTREZ API |
2019-11-06 |
https://github.com/kblin/ncbi-acc-download |
0.2.8 |
ncbi-acc-download |
0.2.8 |
Up-to-date |
Data Source |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_acc_download |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ncbi_acc_download |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1869 |
1892 |
8944 |
9040 |
4848 |
4873 |
18770 |
18827 |
1072 |
1072 |
6704 |
6704 |
45 |
45 |
329 |
329 |
34900 |
34747 |
7882 |
7834 |
https://dev.workflowhub.eu/workflows/1145?version=1, https://dev.workflowhub.eu/workflows/40?version=1, https://usegalaxy.eu/published/workflow?id=08f41680101a1a45, https://usegalaxy.eu/published/workflow?id=3081569659a45b9e, https://usegalaxy.eu/published/workflow?id=4d80a87510b2a54e, https://usegalaxy.eu/published/workflow?id=52cb9bacc26b013e, https://usegalaxy.eu/published/workflow?id=9155ed0e7a6a7b60, https://usegalaxy.eu/published/workflow?id=93d1035a307fe63d, https://usegalaxy.eu/published/workflow?id=a018307be3563f28, https://usegalaxy.eu/published/workflow?id=d07fe8b5a045c176, https://usegalaxy.eu/published/workflow?id=e16e524c557d7928, https://usegalaxy.eu/published/workflow?id=fc0b9efa7d2e61e6, https://usegalaxy.fr/published/workflow?id=c7be6e229a045fad, https://usegalaxy.org.au/published/workflow?id=0f71c97671bb401f, https://usegalaxy.org.au/published/workflow?id=cb6f49d4ebfa0891, https://usegalaxy.org.au/published/workflow?id=d62b6717202f42c9, https://usegalaxy.org/published/workflow?id=005924662f68a480, https://usegalaxy.org/published/workflow?id=0596162a499b4074, https://usegalaxy.org/published/workflow?id=23212ae74fc2d2b5, https://usegalaxy.org/published/workflow?id=2cbcfeb772f348c9, https://usegalaxy.org/published/workflow?id=675d70ee099dd3f2, https://usegalaxy.org/published/workflow?id=be54e57345ce7ca5, https://workflowhub.eu/workflows/1558?version=1, https://workflowhub.eu/workflows/1628?version=1 |
genome-annotation/secondary-metabolite-discovery, variant-analysis/baculovirus-isolate-variation |
|
ncbi_datasets |
datasets_download_gene, datasets_download_genome |
NCBI datasets downloads biological sequence data across all domains of life from NCBI. |
2022-01-27 |
https://github.com/ncbi/datasets |
18.5.1 |
ncbi-datasets-cli |
|
To update |
Data Source |
Data handling, Sequence database search, Data retrieval |
Data handling, Sequence database search, Data retrieval |
Biological databases |
Biological databases |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_datasets |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ncbi_datasets |
ncbi_datasets |
NCBI Datasets |
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases. Find and download sequence, annotation, and metadata for genes and genomes using our command-line tools or web interface. |
|
2 |
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
2 |
2 |
0 |
1117 |
1117 |
5354 |
5354 |
2529 |
2529 |
15172 |
15172 |
2 |
2 |
3 |
3 |
60 |
60 |
275 |
275 |
20804 |
20804 |
3708 |
3708 |
https://usegalaxy.eu/published/workflow?id=c5e6047b3b256b06, https://workflowhub.eu/workflows/1103?version=3, https://workflowhub.eu/workflows/1104?version=2 |
genome-annotation/bacterial-comparative-genomics-dataset-construction |
|
ncbi_entrez_direct |
ncbi_entrez_direct_efetch, ncbi_entrez_direct_einfo, ncbi_entrez_direct_esearch |
NCBI Entrez Direct allow fetching data from NCBI Databases |
2022-03-22 |
http://www.ncbi.nlm.nih.gov/books/NBK179288/ |
22.4 |
entrez-direct |
24.0 |
To update |
Data Source |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ncbi_entrez_direct |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
1 |
0 |
|
|
|
ncbi_entrez_eutils |
ncbi_eutils_ecitmatch, ncbi_eutils_efetch, ncbi_eutils_einfo, ncbi_eutils_elink, ncbi_eutils_epost, ncbi_eutils_esearch, ncbi_eutils_esummary |
NCBI Entrez E-Utilties allow fetching data from NCBI Databases |
2015-04-14 |
https://www.ncbi.nlm.nih.gov/books/NBK25501/ |
1.70 |
python |
|
To update |
Data Source |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ncbi_entrez_eutils |
|
|
|
|
0 |
0 |
7 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
7 |
7 |
0 |
281 |
411 |
2663 |
3235 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3235 |
2663 |
411 |
281 |
|
|
|
ncbi_fcs_gx |
ncbi_fcs_gx |
FCS-GX detects contamination from foreign organisms in genome sequences using the genome cross-species aligner (GX). |
2023-09-21 |
https://github.com/ncbi/fcs-gx |
0.5.5 |
ncbi-fcs-gx |
0.5.5 |
Up-to-date |
Sequence Analysis |
Sequence assembly validation, Sequence trimming, Sequence contamination filtering |
Sequence assembly validation, Sequence trimming, Sequence contamination filtering |
Sequence analysis, Sequence assembly |
Sequence analysis, Sequence assembly |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ncbi_fcs_gx |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ncbi_fcs_gx |
ncbi_fcs |
NCBI fcs |
The NCBI Foreign Contamination Screen (FCS) is a tool suite for identifying and removing contaminant sequences in genome assemblies. Contaminants are defined as sequences in a dataset that do not originate from the biological source organism and can arise from a variety of environmental and laboratory sources. FCS will help you remove contaminants from genomes before submission to GenBank. |
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
65 |
65 |
624 |
624 |
277 |
277 |
6095 |
6095 |
16 |
16 |
51 |
51 |
0 |
0 |
0 |
0 |
6770 |
6770 |
358 |
358 |
|
sequence-analysis/ncbi-fcs |
|
necat |
necat |
Error correction and de-novo assembly for ONT Nanopore reads |
2021-11-29 |
https://github.com/xiaochuanle/NECAT |
0.0.1_update20200803 |
necat |
0.0.1_update20200803 |
Up-to-date |
Assembly |
De-novo assembly |
De-novo assembly |
Sequence assembly |
Sequence assembly |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/necat |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/necat |
necat |
NECAT |
NECAT is an error correction and de-novo assembly tool for Nanopore long noisy reads. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
187 |
187 |
975 |
975 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
975 |
975 |
187 |
187 |
|
|
|
newick_utils |
newick_display |
Perform operations on Newick trees |
2018-10-01 |
http://cegg.unige.ch/newick_utils |
1.6+galaxy1 |
newick_utils |
1.6 |
To update |
Visualization, Metagenomics |
Phylogenetic tree generation, Phylogenetic tree analysis, Phylogenetic tree reconstruction |
|
Phylogeny, Genomics, Computer science |
Phylogeny, Genomics, Computer science |
iuc |
https://github.com/tjunier/newick_utils |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/newick_utils |
newick_utilities |
Newick Utilities |
The Newick Utilities are a set of command-line tools for processing phylogenetic trees. They can process arbitrarily large amounts of data and do not require user interaction, which makes them suitable for automating phylogeny processing tasks. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1290 |
1387 |
36948 |
37965 |
2039 |
2039 |
18100 |
18100 |
965 |
965 |
8377 |
8377 |
47 |
47 |
295 |
295 |
64737 |
63720 |
4438 |
4341 |
https://dev.workflowhub.eu/workflows/1077?version=2, https://dev.workflowhub.eu/workflows/1101?version=1, https://dev.workflowhub.eu/workflows/1117?version=1, https://usegalaxy.eu/published/workflow?id=36de05d50c703164, https://usegalaxy.eu/published/workflow?id=376119528377a3ae, https://usegalaxy.eu/published/workflow?id=974cc681d07ec788, https://usegalaxy.eu/published/workflow?id=c1e26abe61c69688, https://usegalaxy.eu/published/workflow?id=c67d2e75eeb4fd19, https://usegalaxy.eu/published/workflow?id=c8bc4af6dd3b5d02, https://usegalaxy.eu/published/workflow?id=dadca1020f586338, https://usegalaxy.eu/published/workflow?id=dc57118a95b10a80, https://usegalaxy.eu/published/workflow?id=e16e524c557d7928, https://usegalaxy.eu/published/workflow?id=ec50dd6d56f50db1, https://usegalaxy.eu/published/workflow?id=f21d6a40a10a8ae8, https://usegalaxy.eu/published/workflow?id=f6a763951d815944, https://usegalaxy.org.au/published/workflow?id=2717e90438c7fb8c, https://usegalaxy.org.au/published/workflow?id=3fd2195b6928d5e0, https://usegalaxy.org.au/published/workflow?id=a01c3004bcef9dd3, https://usegalaxy.org.au/published/workflow?id=a52609119b30e64d, https://usegalaxy.org.au/published/workflow?id=b60922a253df6654, https://usegalaxy.org.au/published/workflow?id=eda40b58616a0fe4, https://usegalaxy.org/published/workflow?id=005924662f68a480, https://usegalaxy.org/published/workflow?id=0596162a499b4074, https://usegalaxy.org/published/workflow?id=2d3063882d8239ff, https://usegalaxy.org/published/workflow?id=3ef08553982f6ffc, https://usegalaxy.org/published/workflow?id=603e5c61c57bcf3f, https://usegalaxy.org/published/workflow?id=6a1eb7e7bececba1, https://usegalaxy.org/published/workflow?id=6f090b2c259847d2, https://usegalaxy.org/published/workflow?id=775335812a6b7a61, https://usegalaxy.org/published/workflow?id=9c4038fa15af6995, https://usegalaxy.org/published/workflow?id=bc01b8b203ecc754, https://usegalaxy.org/published/workflow?id=d653eaefcf6b4697, https://workflowhub.eu/workflows/1060?version=1, https://workflowhub.eu/workflows/1418?version=1, https://workflowhub.eu/workflows/1465?version=1, https://workflowhub.eu/workflows/1487?version=2, https://workflowhub.eu/workflows/653?version=1 |
evolution/abc_intro_phylo, microbiome/mothur-miseq-sop, microbiome/mothur-miseq-sop-short, microbiome/pathogen-detection-from-nanopore-foodborne-data |
|
nextclade |
nextalign, nextclade |
Identify differences between your sequences and a reference sequence used by Nextstrain |
2021-03-29 |
https://github.com/nextstrain/nextclade |
2.7.0 |
nextalign |
2.14.0 |
To update |
Sequence Analysis |
Methylation analysis, Variant calling |
Methylation analysis, Variant calling |
Genomics, Sequence analysis, Cladistics |
Genomics, Cladistics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/nextclade |
nextclade |
Nextclade |
Nextclade is an open-source project for viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement. |
|
1 |
1 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
357 |
357 |
4640 |
4640 |
291 |
291 |
11077 |
11077 |
218 |
218 |
2235 |
2235 |
11 |
11 |
669 |
669 |
18621 |
18621 |
877 |
877 |
https://usegalaxy.eu/published/workflow?id=0189bab68f828d86, https://usegalaxy.eu/published/workflow?id=1d1ebdeddf23bdb9, https://usegalaxy.eu/published/workflow?id=4c75ab0be3c56494, https://usegalaxy.eu/published/workflow?id=5c15f251642bfa1f, https://usegalaxy.eu/published/workflow?id=74f19aff1b9cdd6b, https://usegalaxy.eu/published/workflow?id=9feebfc6c34da287, https://usegalaxy.fr/published/workflow?id=2345fad7dac13daa, https://usegalaxy.fr/published/workflow?id=591c57173e259ca6, https://usegalaxy.fr/published/workflow?id=e4735d214a68b790, https://usegalaxy.fr/published/workflow?id=feb57548b3ce914d, https://usegalaxy.org.au/published/workflow?id=7563b3ef697a69fd, https://usegalaxy.org/published/workflow?id=0fa2ce12c2874b1d, https://usegalaxy.org/published/workflow?id=4b41a8247f52c463, https://usegalaxy.org/published/workflow?id=8b81b9a3b49bbf98, https://usegalaxy.org/published/workflow?id=d96bd5c9fb553f2c, https://workflowhub.eu/workflows/155?version=5, https://workflowhub.eu/workflows/520?version=1 |
variant-analysis/sars-cov-2-variant-discovery |
|
ngmlr |
ngmlr |
CoNvex Gap-cost alignMents for Long Reads |
2020-10-27 |
https://github.com/philres/ngmlr |
0.2.7 |
ngmlr |
0.2.7 |
Up-to-date |
Next Gen Mappers |
DNA mapping, Sequence alignment, Genetic variation analysis |
DNA mapping, Sequence alignment, Genetic variation analysis |
Sequencing, Mapping, DNA structural variation |
Sequencing, Mapping |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ngmlr |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ngmlr |
ngmlr |
NGMLR |
An algorithm to map third generation long-read sequencing data (PacBio and Oxford Nanopore) to a reference genome with a focus on reads that span structural variation. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
51 |
51 |
1406 |
1406 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1406 |
1406 |
51 |
51 |
https://usegalaxy.eu/published/workflow?id=04a4dcac3fd922c5 |
|
|
ngsutils |
ngsutils_bam_filter |
NGSUtils is a suite of software tools for working with next-generation sequencing datasets.Starting in 2009, we (Liu Lab @ Indiana University School of Medicine) starting working withnext-generation sequencing data. We initially started doing custom coding for each project in a one-off manner.It quickly became apparent that this was an inefficient manner to work, so we started assembling smallerutilities that could be adapted into larger, more complicated, workflows. We have used them for Illumia,SOLiD, 454, Ion Torrent, and Pac Bio sequencing data. We have used them for DNA and RNA resequcing,ChIP-Seq, CLIP-Seq, and targeted resequencing (Agilent exome capture and PCR targeting).These tools are also used heavily in our in-house DNA and RNA mapping pipelines.NGSUtils is made up of 50+ programs, mainly written in Python.These are separated into modules based on the type of file that is to be analyzed. |
2015-11-10 |
https://github.com/ngsutils/ngsutils |
|
ngsutils |
0.5.9 |
To update |
SAM |
Read pre-processing, Sequencing quality control, Variant calling, Formatting, Sequence contamination filtering |
Read pre-processing, Variant calling, Formatting, Sequence contamination filtering |
Genomics, Transcriptomics |
Transcriptomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ngsutils |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ngsutils |
ngsutils |
NGSUtils |
NGSUtils is a suite of software tools for working with next-generation sequencing datasets |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
685 |
803 |
25649 |
32663 |
874 |
1295 |
16536 |
23395 |
126 |
156 |
9176 |
10555 |
20 |
20 |
146 |
146 |
66759 |
51507 |
2274 |
1705 |
https://dev.workflowhub.eu/workflows/1099?version=1, https://dev.workflowhub.eu/workflows/1116?version=1, https://usegalaxy.eu/published/workflow?id=24ddd188da35b061, https://usegalaxy.eu/published/workflow?id=45fc2dada84d251e, https://usegalaxy.eu/published/workflow?id=6514e610c79df72c, https://usegalaxy.eu/published/workflow?id=6a5c39c1d38a10c2, https://usegalaxy.eu/published/workflow?id=8fb156020285e049, https://usegalaxy.eu/published/workflow?id=b619339f4e1c6fdf, https://usegalaxy.eu/published/workflow?id=ce5c16ac23c4fbb1, https://usegalaxy.eu/published/workflow?id=f33b5135ee99e0dc, https://usegalaxy.eu/published/workflow?id=fc0b9efa7d2e61e6, https://usegalaxy.org.au/published/workflow?id=a7726d18d2a5fcf2, https://usegalaxy.org/published/workflow?id=1f48b44fa22ac5fc, https://usegalaxy.org/published/workflow?id=2ded909e7e3a9962, https://usegalaxy.org/published/workflow?id=71f8a4090877f171, https://workflowhub.eu/workflows/100?version=1, https://workflowhub.eu/workflows/102?version=1, https://workflowhub.eu/workflows/1480?version=1, https://workflowhub.eu/workflows/1631?version=1 |
assembly/metagenomics-assembly, microbiome/metagenomics-assembly |
|
nonpareil |
nonpareil |
Estimate average coverage in metagenomic datasets |
2017-11-03 |
http://nonpareil.readthedocs.io |
3.5.5 |
nonpareil |
3.5.5 |
Up-to-date |
Metagenomics |
Operation |
Operation |
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/nonpareil |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/nonpareil |
nonpareil |
nonpareil |
Estimate metagenomic coverage and sequence diversity |
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
14 |
16 |
104 |
155 |
21 |
21 |
150 |
150 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
305 |
254 |
37 |
35 |
|
|
|
novoplasty |
novoplasty |
NOVOPlasty is a de novo assembler and heteroplasmy/variance caller for short circular genomes. |
2020-05-18 |
https://github.com/ndierckx/NOVOPlasty |
4.3.1 |
novoplasty |
4.3.5 |
To update |
Assembly |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/novoplasty |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/novoplasty |
|
|
|
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
404 |
404 |
9244 |
9244 |
1 |
1 |
1 |
1 |
115 |
115 |
2728 |
2728 |
9 |
9 |
30 |
30 |
12003 |
12003 |
529 |
529 |
https://usegalaxy.eu/published/workflow?id=5436eb1c430a38dd |
|
|
nugen_nudup |
nugen_nudup |
Marks/removes PCR introduced duplicate molecules based on the molecular tagging technology used in NuGEN products. |
2016-11-18 |
https://github.com/tecangenomics/nudup |
2.3.3 |
nudup |
2.3.3 |
Up-to-date |
SAM, Metagenomics, Sequence Analysis, Transcriptomics |
Duplication detection, Sequence analysis |
Duplication detection, Sequence analysis |
Sequencing, Genomics |
Sequencing, Genomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/nugen_nudup |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/nugen_nudup |
nudup |
NuDup |
Marks/removes duplicate molecules based on the molecular tagging technology used in Tecan products. |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
obitools |
obi_illumina_pairend, obi_ngsfilter, obi_annotate, obi_clean, obi_convert, obi_grep, obi_sort, obi_stat, obi_tab, obi_uniq |
OBITools is a set of programs developed to simplify the manipulation of sequence files |
2017-03-22 |
http://metabarcoding.org/obitools |
1.2.13 |
obitools |
1.2.13 |
Up-to-date |
Sequence Analysis |
Sequence analysis, Sequence analysis |
Sequence analysis, Sequence analysis |
Sequence analysis, DNA, Sequencing |
Sequence analysis, DNA, Sequencing |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/obitools |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/obitools |
obitools |
OBITools |
Set of python programs developed to simplify the manipulation of sequence files. They were mainly designed to help us for analyzing Next Generation Sequencer outputs (454 or Illumina) in the context of DNA Metabarcoding. |
|
0 |
10 |
10 |
10 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
10 |
0 |
364 |
366 |
40651 |
40699 |
0 |
0 |
0 |
0 |
94 |
94 |
4434 |
4434 |
21 |
21 |
1382 |
1382 |
46515 |
46467 |
481 |
479 |
https://dev.workflowhub.eu/workflows/1274?version=2, https://usegalaxy.eu/published/workflow?id=513389e1a8c6bba9, https://usegalaxy.eu/published/workflow?id=afad9a17a80bb26d, https://usegalaxy.eu/published/workflow?id=edf7e2128f5aef8d, https://usegalaxy.org.au/published/workflow?id=470eb26144325590, https://workflowhub.eu/workflows/1702?version=1, https://workflowhub.eu/workflows/655?version=1 |
ecology/Obitools-metabarcoding |
|
ococo |
ococo |
Variant detection of SNVs |
2017-12-07 |
https://github.com/karel-brinda/ococo |
0.1.2.6 |
ococo |
0.1.2.7 |
To update |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ococo |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ococo |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
74 |
93 |
1830 |
2008 |
200 |
201 |
1498 |
1500 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3508 |
3328 |
294 |
274 |
https://usegalaxy.eu/published/workflow?id=30dc526dcfa500df |
|
|
odgi |
odgi_build, odgi_viz |
Representing large genomic variation graphs with minimal memory overhead requires a careful encoding of the graph entities. odgi follows the dynamic GBWT in developing a byte-packed version of the graph and paths through it. |
2020-04-06 |
https://github.com/vgteam/odgi |
0.3 |
odgi |
0.9.3 |
To update |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/odgi/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/odgi |
|
|
|
|
0 |
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
4 |
4 |
29 |
29 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
29 |
29 |
4 |
4 |
|
|
|
omark |
omark |
Proteome quality assessment software |
2023-11-15 |
https://github.com/DessimozLab/OMArk |
0.3.1 |
|
|
To update |
Sequence Analysis |
Sequence assembly validation, Differential protein expression profiling |
Sequence assembly validation, Differential protein expression profiling |
Proteomics, Sequence analysis, Statistics and probability |
Proteomics, Sequence analysis, Statistics and probability |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/omark/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/omark |
omark |
OMArk |
OMArk is a software for proteome (protein-coding gene repertoire) quality assessment. It provides measures of proteome completeness, characterizes the consistency of all protein coding genes with regard to their homologs, and identifies the presence of contamination from other species. OMArk relies on the OMA orthology database, from which it exploits orthology relationships, and on the OMAmer software for fast placement of all proteins into gene families. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
43 |
43 |
442 |
442 |
3 |
3 |
3 |
3 |
0 |
0 |
0 |
0 |
4 |
4 |
296 |
296 |
741 |
741 |
50 |
50 |
https://dev.workflowhub.eu/workflows/1358?version=2, https://usegalaxy.eu/published/workflow?id=31bc2a44fb89aa89, https://usegalaxy.eu/published/workflow?id=327beb1edda305ff, https://usegalaxy.eu/published/workflow?id=3d604dad4f1f5b3d, https://usegalaxy.eu/published/workflow?id=4077e77b6af919c4, https://usegalaxy.eu/published/workflow?id=8976041ef89e4548, https://usegalaxy.org/published/workflow?id=4605309321799e9b, https://usegalaxy.org/published/workflow?id=f4111a169255535c, https://workflowhub.eu/workflows/1096?version=2, https://workflowhub.eu/workflows/1255?version=3, https://workflowhub.eu/workflows/1500?version=1, https://workflowhub.eu/workflows/1746?version=1 |
genome-annotation/braker3, genome-annotation/comparison-braker-helixer-annotation, genome-annotation/helixer |
|
ont_fast5_api |
ont_fast5_api_compress_fast5, ont_fast5_api_fast5_subset, ont_fast5_api_multi_to_single_fast5, ont_fast5_api_single_to_multi_fast5 |
ont_fast5_api is a simple interface to HDF5 files of the Oxford Nanopore FAST5 file format. |
2020-06-08 |
https://github.com/nanoporetech/ont_fast5_api/ |
3.1.3 |
ont-fast5-api |
4.1.3 |
To update |
Nanopore |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ont_fast5_api |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ont_fast5_api |
|
|
|
|
0 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
4 |
0 |
50 |
50 |
3090 |
3090 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3090 |
3090 |
50 |
50 |
https://usegalaxy.eu/published/workflow?id=d5b1fab611ddfeb0, https://usegalaxy.eu/published/workflow?id=e271d95a671182ec |
|
|
onto_toolkit |
onto_tk_get_ancestor_terms, onto_tk_get_child_terms, onto_tk_get_descendent_terms, onto_tk_get_parent_terms, onto_tk_get_parent_terms_by_relationship_type, onto_tk_get_relationship_id_vs_relationship_def, onto_tk_get_relationship_id_vs_relationship_name, onto_tk_get_relationship_id_vs_relationship_namespace, onto_tk_get_relationship_types, onto_tk_get_root_terms, onto_tk_get_subontology_from, onto_tk_term_id_vs_term_def, onto_tk_term_id_vs_term_name, onto_tk_get_term_synonyms, onto_tk_get_terms, onto_tk_get_terms_by_relationship_type, onto_tk_obo2owl, onto_tk_obo2rdf, onto_tk_term_id_vs_term_def |
ONTO-Toolkit is a collection of tools for managing ontologies. |
2017-11-04 |
http://search.cpan.org/~easr/ONTO-PERL-1.45/ |
1.45 |
perl-onto-perl |
1.45 |
Up-to-date |
Ontology Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/onto_toolkit |
|
|
|
|
0 |
0 |
17 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
17 |
17 |
0 |
10 |
11 |
443 |
665 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
665 |
443 |
11 |
10 |
|
|
|
openalex_explorer |
openalex_explorer |
Fetch citing papers from OpenAlex using DOI, ID and title |
2025-05-29 |
https://openalex.org/ |
0.1.0+galaxy0 |
python |
|
To update |
Text Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/openalex |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/openalex |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
optdoe |
optdoe |
Optimal Design Of Experiment |
2022-10-27 |
https://github.com/pablocarb/doebase |
v2.0.2 |
doebase |
|
To update |
Synthetic Biology |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/optdoe |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/optdoe |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
optitype |
optitype |
Precision HLA typing from NGS data |
2021-02-17 |
https://github.com/FRED-2/OptiType |
1.3.5 |
optitype |
1.3.5 |
Up-to-date |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/optitype1 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/optitype |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
52 |
52 |
549 |
549 |
6 |
6 |
39 |
39 |
2 |
2 |
39 |
39 |
0 |
0 |
0 |
0 |
627 |
627 |
60 |
60 |
https://dev.workflowhub.eu/workflows/1381?version=1, https://usegalaxy.eu/published/workflow?id=db270d0eb035609e, https://usegalaxy.org.au/published/workflow?id=2249ab6710f5e84d, https://usegalaxy.org/published/workflow?id=1d925422fc6094a0, https://workflowhub.eu/workflows/1430?version=1, https://workflowhub.eu/workflows/1794?version=1 |
proteomics/neoantigen-predicting-hla-binding |
|
orfipy |
orfipy |
Galaxy wrapper for ORFIPY |
2022-04-07 |
https://github.com/urmi-21/orfipy |
0.0.4 |
orfipy |
0.0.4 |
Up-to-date |
Sequence Analysis |
Coding region prediction, Database search, Transcriptome assembly, De-novo assembly |
Coding region prediction, Database search, Transcriptome assembly, De-novo assembly |
Computer science, RNA-Seq, Transcriptomics, Small molecules |
Computer science, RNA-Seq, Transcriptomics, Small molecules |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/orfipy |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/orfipy |
orfipy |
orfipy |
A fast and flexible tool for extracting ORFs.orfipy is a tool written in python/cython to extract ORFs in extremely an fast and flexible manner. Other popular ORF searching tools are OrfM and getorf. Compared to OrfM and getorf, orfipy provides the most options to fine tune ORF searches. orfipy uses multiple CPU cores and is particularly faster for data containing multiple smaller fasta sequences such as de-novo transcriptome assemblies. Please read the preprint here. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
118 |
118 |
1124 |
1124 |
280 |
280 |
2161 |
2161 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3285 |
3285 |
398 |
398 |
https://usegalaxy.eu/published/workflow?id=30dc526dcfa500df |
genome-annotation/gene-centric |
|
orthofinder |
orthofinder_onlygroups |
Accurate inference of orthologous gene groups made easy |
2017-05-22 |
https://github.com/davidemms/OrthoFinder |
2.5.5 |
orthofinder |
3.1.0 |
To update |
Phylogenetics, Sequence Analysis |
Genome comparison, Phylogenetic tree generation (from molecular sequences), Phylogenetic tree analysis, Genome alignment |
Genome comparison, Genome alignment |
Phylogenetics, Phylogenomics, Bioinformatics, Comparative genomics, Sequence analysis |
Phylogenetics, Phylogenomics, Bioinformatics, Comparative genomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/orthofinder |
OrthoFinder |
OrthoFinder |
OrthoFinder is a fast, accurate and comprehensive platform for comparative genomics. It finds orthogroups and orthologs, infers rooted gene trees for all orthogroups and identifies all of the gene duplcation events in those gene trees. It also infers a rooted species tree for the species being analysed and maps the gene duplication events from the gene trees to branches in the species tree. OrthoFinder also provides comprehensive statistics for comparative genomic analyses. |
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
546 |
546 |
2570 |
2570 |
0 |
0 |
0 |
0 |
94 |
94 |
976 |
976 |
33 |
33 |
213 |
213 |
3759 |
3759 |
673 |
673 |
|
|
|
packaged_annotation_loader |
packaged_annotation_loader |
Tool to make cached genome annotation data available as a list of datasets collection |
2022-01-04 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/packaged_annotation_loader |
0.1 |
python |
|
To update |
Data Source |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/packaged_annotation_loader |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/packaged_annotation_loader |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
pacu |
pacu_map, pacu_snp |
PACU is a workflow for whole genome sequencing based phylogeny of Illumina and ONT R9/R10 data. |
2024-08-13 |
https://github.com/BioinformaticsPlatformWIV-ISP/PACU |
0.0.5 |
pacu_snp |
0.0.7 |
To update |
Sequence Analysis, Phylogenetics |
Clustering |
Clustering |
Phylogenetics, Sequence analysis |
Phylogenetics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/pacu |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pacu |
pacu |
PACU |
PACU is a workflow for whole genome sequencing based phylogeny of Illumina and ONT R9/R10 data.PACU stands for the Prokaryotic Awesome variant Calling Utility and is named after an omnivorous fish (that eats both Illumina and ONT reads). |
|
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
11 |
55 |
55 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
55 |
55 |
11 |
11 |
|
|
|
pairtools |
pairtools_dedup, pairtools_parse, pairtools_sort, pairtools_split, pairtools_stats |
Flexible tools for Hi-C data processing |
2024-03-26 |
https://pairtools.readthedocs.io |
1.1.3 |
pairtools |
1.1.3 |
Up-to-date |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/open2c/pairtools |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pairtools |
|
|
|
|
5 |
0 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
9 |
9 |
365 |
365 |
6 |
6 |
41 |
41 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
406 |
406 |
15 |
15 |
https://workflowhub.eu/workflows/1103?version=3, https://workflowhub.eu/workflows/1104?version=2, https://workflowhub.eu/workflows/1164?version=2 |
|
|
panaroo |
panaroo |
A Bacterial Pangenome Analysis Pipeline |
2025-02-28 |
https://gthlab.au/panaroo/#/ |
1.5.2 |
panaroo |
1.5.2 |
Up-to-date |
Sequence Analysis |
De-novo assembly, Genome assembly, Clustering |
De-novo assembly, Genome assembly, Clustering |
Workflows, Sequence assembly, Gene and protein families, Plant biology, Sequencing |
Workflows, Sequence assembly, Gene and protein families, Plant biology, Sequencing |
galaxy-australia |
https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/panaroo |
panaroo |
Panaroo |
Producing Polished Prokaryotic Pangenomes with the Panaroo Pipeline. |
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
16 |
16 |
129 |
129 |
0 |
0 |
0 |
0 |
129 |
129 |
16 |
16 |
|
|
|
pangolin |
pangolin |
Pangolin assigns SARS-CoV-2 genome sequences their most likely lineages under the Pango nomenclature system. |
2021-03-06 |
https://github.com/cov-lineages/pangolin |
4.3 |
pangolin |
4.3.1 |
To update |
Sequence Analysis |
Tree-based sequence alignment, Variant classification |
Tree-based sequence alignment, Variant classification |
Virology |
Virology |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/pangolin |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pangolin |
pangolin_cov-lineages |
pangolin |
Phylogenetic Assignment of Named Global Outbreak LINeages - software package for assigning SARS-CoV-2 genome sequences to global lineages |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
573 |
573 |
7622 |
7622 |
391 |
391 |
8560 |
8560 |
268 |
268 |
2952 |
2952 |
12 |
12 |
548 |
548 |
19682 |
19682 |
1244 |
1244 |
https://dev.workflowhub.eu/workflows/1293?version=1, https://usegalaxy.eu/published/workflow?id=0189bab68f828d86, https://usegalaxy.eu/published/workflow?id=1d1ebdeddf23bdb9, https://usegalaxy.eu/published/workflow?id=4c75ab0be3c56494, https://usegalaxy.eu/published/workflow?id=5c15f251642bfa1f, https://usegalaxy.eu/published/workflow?id=74f19aff1b9cdd6b, https://usegalaxy.eu/published/workflow?id=9feebfc6c34da287, https://usegalaxy.fr/published/workflow?id=2345fad7dac13daa, https://usegalaxy.fr/published/workflow?id=591c57173e259ca6, https://usegalaxy.fr/published/workflow?id=e4735d214a68b790, https://usegalaxy.fr/published/workflow?id=feb57548b3ce914d, https://usegalaxy.org.au/published/workflow?id=7563b3ef697a69fd, https://usegalaxy.org/published/workflow?id=0fa2ce12c2874b1d, https://usegalaxy.org/published/workflow?id=4b41a8247f52c463, https://usegalaxy.org/published/workflow?id=8b81b9a3b49bbf98, https://usegalaxy.org/published/workflow?id=d96bd5c9fb553f2c, https://workflowhub.eu/workflows/1391?version=1, https://workflowhub.eu/workflows/155?version=5 |
galaxy-interface/workflow-automation, variant-analysis/sars-cov-2-variant-discovery |
|
parse_mito_blast |
parse_mito_blast |
Filtering blast out from querying assembly against mitochondrial database. |
2022-05-12 |
https://raw.githubusercontent.com/VGP/vgp-assembly/master/galaxy_tools/parse_mito_blast/parse_mito_blast.py |
1.0.2 |
parse_mito_blast |
1.0.2 |
Up-to-date |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/parse_mito_blast |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/parse_mito_blast |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
96 |
96 |
426 |
426 |
75 |
75 |
496 |
496 |
24 |
24 |
135 |
135 |
0 |
0 |
0 |
0 |
1057 |
1057 |
195 |
195 |
https://dev.workflowhub.eu/workflows/1359?version=1, https://usegalaxy.eu/published/workflow?id=012762cb4acb068b, https://usegalaxy.eu/published/workflow?id=0f044c9f62773a88, https://usegalaxy.eu/published/workflow?id=12a018217ee146ca, https://usegalaxy.eu/published/workflow?id=2497292e98937a5f, https://usegalaxy.eu/published/workflow?id=2c2f0b4312bae4f4, https://usegalaxy.eu/published/workflow?id=33a052f9a3d5551d, https://usegalaxy.eu/published/workflow?id=3dec7c9b02c3d1ee, https://usegalaxy.eu/published/workflow?id=8a14cda6140acab7, https://usegalaxy.eu/published/workflow?id=8c7e972020799d57, https://usegalaxy.eu/published/workflow?id=8d64614d1971065a, https://usegalaxy.eu/published/workflow?id=9588311136ac8794, https://usegalaxy.eu/published/workflow?id=c4fc3adf8f7ff2bc, https://usegalaxy.eu/published/workflow?id=ec6b2c926fffab5f, https://usegalaxy.org.au/published/workflow?id=0edb9c8b767fa74b, https://usegalaxy.org.au/published/workflow?id=3d47e0de658b3304, https://usegalaxy.org.au/published/workflow?id=4047f9f242542716, https://usegalaxy.org.au/published/workflow?id=5fb44f257e445f56, https://usegalaxy.org.au/published/workflow?id=8034bd0690b4cbe8, https://usegalaxy.org.au/published/workflow?id=83441e3de699d157, https://usegalaxy.org.au/published/workflow?id=897a1255cef5c310, https://usegalaxy.org.au/published/workflow?id=97e55a900db3863b, https://usegalaxy.org.au/published/workflow?id=c92fead7c30c7497, https://usegalaxy.org.au/published/workflow?id=d2dcd3b54e5082a6, https://usegalaxy.org.au/published/workflow?id=d417e920ff97e4c1, https://usegalaxy.org.au/published/workflow?id=d720c98f7227b6d5, https://usegalaxy.org/published/workflow?id=1473cdcbd664d147, https://usegalaxy.org/published/workflow?id=1b80302437db5937, https://usegalaxy.org/published/workflow?id=5c259623a010fe77, https://usegalaxy.org/published/workflow?id=5e38c7b36e4918ad, https://usegalaxy.org/published/workflow?id=605160c81d098703, https://usegalaxy.org/published/workflow?id=7c9a55db0b0eb178, https://usegalaxy.org/published/workflow?id=b7fe3873ee5e3a02, https://usegalaxy.org/published/workflow?id=c8f9e048ddae7d03, https://usegalaxy.org/published/workflow?id=cace9f1359874352, https://usegalaxy.org/published/workflow?id=d2c408df40dc311b, https://usegalaxy.org/published/workflow?id=e887adf3afc3253d, https://usegalaxy.org/published/workflow?id=ea206593698adbfd, https://usegalaxy.org/published/workflow?id=fc2b48600853f3ea, https://workflowhub.eu/workflows/1594?version=1, https://workflowhub.eu/workflows/645?version=12 |
assembly/assembly-decontamination |
|
pathview |
pathview |
Pathview is a tool set for pathway based data integration and visualization. |
2019-08-26 |
https://bioconductor.org/packages/release/bioc/html/pathview.html |
1.34.0 |
bioconductor-pathview |
1.46.0 |
To update |
Statistics, RNA, Micro-array Analysis |
Pathway or network analysis, Pathway or network visualisation |
Pathway or network analysis, Pathway or network visualisation |
Molecular interactions, pathways and networks, Systems biology, Data visualisation |
Molecular interactions, pathways and networks, Systems biology, Data visualisation |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/pathview |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pathview |
pathview |
pathview |
Tool set for pathway based data integration and visualization that maps and renders a wide variety of biological data on relevant pathway graphs. It downloads the pathway graph data, parses the data file, maps user data to the pathway, and render pathway graph with the mapped data. In addition, it integrates with pathway and gene set (enrichment) analysis tools for large-scale and fully automated analysis. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1406 |
1450 |
7343 |
7510 |
1333 |
1333 |
7822 |
7822 |
203 |
203 |
1313 |
1313 |
17 |
17 |
232 |
232 |
16877 |
16710 |
3003 |
2959 |
https://dev.workflowhub.eu/workflows/1326?version=3, https://usegalaxy.org.au/published/workflow?id=5490661d0153962b, https://workflowhub.eu/workflows/1713?version=1 |
transcriptomics/ref-based |
|
pbgcpp |
pbgcpp |
Compute genomic consensus and call variants using PacBio reads mapped to a reference |
2022-03-10 |
https://github.com/PacificBiosciences/gcpp |
2.0.2 |
pbgcpp |
2.0.2 |
Up-to-date |
Variant Analysis |
Variant calling |
Variant calling |
Mapping |
Mapping |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/pbgcpp |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pbgcpp |
genomicconsensus |
GenomicConsensus |
The GenomicConsensus package provides the variantCaller tool, which allows you to apply the Quiver or Arrow algorithm to mapped PacBio reads to get consensus and variant calls. |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
pbmm2 |
pbmm2 |
A minimap2 SMRT wrapper for PacBio data. |
2022-03-10 |
https://github.com/PacificBiosciences/pbmm2 |
1.17.0 |
pbmm2 |
1.17.0 |
Up-to-date |
Next Gen Mappers |
Pairwise sequence alignment, Sorting |
Pairwise sequence alignment, Sorting |
Mapping |
Mapping |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/pbmm2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pbmm2 |
pbmm2 |
pbmm2 |
pbmm2 is a SMRT C++ wrapper for minimap2's C API. Its purpose is to support native PacBio in- and output, provide sets of recommended parameters, generate sorted output on-the-fly, and postprocess alignments. Sorted output can be used directly for polishing using GenomicConsensus, if BAM has been used as input to pbmm2. Benchmarks show that pbmm2 outperforms BLASR in sequence identity, number of mapped bases, and especially runtime. pbmm2 is the official replacement for BLASR. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
28 |
28 |
122 |
122 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
122 |
122 |
28 |
28 |
|
|
|
pcdl |
pcdl_get_anndata, pcdl_get_cell_attribute, pcdl_get_cell_attribute_list, pcdl_get_cell_df, pcdl_get_celltype_list, pcdl_get_conc_attribute, pcdl_get_conc_df, pcdl_get_substrate_list, pcdl_get_unit_dict, pcdl_get_version, pcdl_make_cell_vtk, pcdl_make_conc_vtk, pcdl_make_gif, pcdl_make_graph_gml, pcdl_make_movie, pcdl_plot_contour, pcdl_plot_scatter, pcdl_plot_timeseries |
pcdl PhysiCell Data Loader. |
2025-06-06 |
https://github.com/elmbeech/physicelldataloader |
3.0.1+galaxy0 |
|
|
To update |
Systems Biology, Data Export, Graphics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pcdl/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pcdl |
|
|
|
|
0 |
0 |
18 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
pdfimages |
pdfimages |
PDF image extractor. |
2025-07-31 |
https://gitlab.freedesktop.org/poppler/poppler/ |
25.07.0 |
poppler |
|
To update |
Imaging, Natural Language Processing |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pdfimages/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pdfimages |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
pe_histogram |
pe_histogram |
Contains a tool that produces an insert size histogram for a paired-end BAM file. |
2016-06-16 |
https://github.com/seqcode/cegr-tools/tree/master/src/org/seqcode/cegrtools/pehistogram |
1.0.2 |
openjdk |
|
To update |
Graphics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/pe_histogram |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pe_histogram |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
601 |
601 |
6835 |
6835 |
932 |
1046 |
9075 |
9900 |
151 |
151 |
867 |
867 |
62 |
62 |
157 |
157 |
17759 |
16934 |
1860 |
1746 |
https://dev.workflowhub.eu/workflows/1161?version=2, https://dev.workflowhub.eu/workflows/1169?version=2, https://dev.workflowhub.eu/workflows/574?version=1, https://usegalaxy.eu/published/workflow?id=1089e5c66dbcc1a3, https://usegalaxy.eu/published/workflow?id=111527fe542846af, https://usegalaxy.eu/published/workflow?id=1ee43d90b69829e9, https://usegalaxy.eu/published/workflow?id=25aa944237d7fb82, https://usegalaxy.eu/published/workflow?id=2f51a82838722bec, https://usegalaxy.eu/published/workflow?id=30e7dc81e323cbdb, https://usegalaxy.eu/published/workflow?id=3b8ef7905c902b27, https://usegalaxy.eu/published/workflow?id=45f63151bf4f1a49, https://usegalaxy.eu/published/workflow?id=48f63ef14a12f306, https://usegalaxy.eu/published/workflow?id=4daa0c33d6d50379, https://usegalaxy.eu/published/workflow?id=54b91dd86f463391, https://usegalaxy.eu/published/workflow?id=7e0ba4c14803448e, https://usegalaxy.eu/published/workflow?id=8132c3b710fd6d48, https://usegalaxy.eu/published/workflow?id=93a7047396080fda, https://usegalaxy.eu/published/workflow?id=94b9287365ea4d0d, https://usegalaxy.eu/published/workflow?id=ad4b347f9b68e127, https://usegalaxy.eu/published/workflow?id=c3eba26c5d7febff, https://usegalaxy.eu/published/workflow?id=c9aff55e39e195e3, https://usegalaxy.eu/published/workflow?id=d12617d0df5f81d0, https://usegalaxy.eu/published/workflow?id=d83280cd72ec0f33, https://usegalaxy.eu/published/workflow?id=f14ebad1c3c20067, https://usegalaxy.org.au/published/workflow?id=32d28f800adcea42, https://usegalaxy.org.au/published/workflow?id=3e7fcfd23872ad0d, https://usegalaxy.org.au/published/workflow?id=52056336f24eccf6, https://usegalaxy.org.au/published/workflow?id=6b3df543536faf8c, https://usegalaxy.org/published/workflow?id=00bc4e99626da1ba, https://usegalaxy.org/published/workflow?id=0ebb1f5b6c9c8ab9, https://usegalaxy.org/published/workflow?id=1250ec3ad6199cda, https://usegalaxy.org/published/workflow?id=13a1fa4f6daf65cc, https://usegalaxy.org/published/workflow?id=156e245e3d9f22ce, https://usegalaxy.org/published/workflow?id=15ea806eaf077617, https://usegalaxy.org/published/workflow?id=17f3d7e52777d2e8, https://usegalaxy.org/published/workflow?id=1e1d7fac7e241768, https://usegalaxy.org/published/workflow?id=1ffc71df8eeed57e, https://usegalaxy.org/published/workflow?id=2957924403998f3a, https://usegalaxy.org/published/workflow?id=2b5346b94358df88, https://usegalaxy.org/published/workflow?id=2cc5472ad7c039d1, https://usegalaxy.org/published/workflow?id=336795e890851c21, https://usegalaxy.org/published/workflow?id=3673a1ced343d0d0, https://usegalaxy.org/published/workflow?id=46e718fb8eeb4d54, https://usegalaxy.org/published/workflow?id=472f73c3e81da1d9, https://usegalaxy.org/published/workflow?id=506acac8c6a58d5e, https://usegalaxy.org/published/workflow?id=527adadecbab2eb6, https://usegalaxy.org/published/workflow?id=52bde903adbbaf60, https://usegalaxy.org/published/workflow?id=52e2b69787ca7a17, https://usegalaxy.org/published/workflow?id=553125cd799e5982, https://usegalaxy.org/published/workflow?id=59007e2bc9c807ee, https://usegalaxy.org/published/workflow?id=5d1208bd49f97aeb, https://usegalaxy.org/published/workflow?id=60b9910b7bb69f47, https://usegalaxy.org/published/workflow?id=6a174e7498434bd5, https://usegalaxy.org/published/workflow?id=6db96a9c7e4b8d14, https://usegalaxy.org/published/workflow?id=75fffbce810acaf3, https://usegalaxy.org/published/workflow?id=7b9e17cb1d72d7e4, https://usegalaxy.org/published/workflow?id=7c4a2339b17a8930, https://usegalaxy.org/published/workflow?id=7fb4dae5daab0522, https://usegalaxy.org/published/workflow?id=8095deba606ebd5e, https://usegalaxy.org/published/workflow?id=85bc37a59a6ea443, https://usegalaxy.org/published/workflow?id=885f0e66fa6b8790, https://usegalaxy.org/published/workflow?id=88e10493f7e6b9d5, https://usegalaxy.org/published/workflow?id=8a215695e7b57cf5, https://usegalaxy.org/published/workflow?id=8bf608c6fd0dabd0, https://usegalaxy.org/published/workflow?id=907aaf55487ddf43, https://usegalaxy.org/published/workflow?id=91806144e90637e8, https://usegalaxy.org/published/workflow?id=9255c0c9017b139f, https://usegalaxy.org/published/workflow?id=93cb976bd4ae546e, https://usegalaxy.org/published/workflow?id=96ae2544e22d34c5, https://usegalaxy.org/published/workflow?id=97c20a819394e381, https://usegalaxy.org/published/workflow?id=98a4b90f7fc2bfce, https://usegalaxy.org/published/workflow?id=99ee567c092fb34c, https://usegalaxy.org/published/workflow?id=9e9a027e0c294a79, https://usegalaxy.org/published/workflow?id=9eb29b71d7effefc, https://usegalaxy.org/published/workflow?id=a164d857439a126f, https://usegalaxy.org/published/workflow?id=a4a56efb37d845bf, https://usegalaxy.org/published/workflow?id=a89008fccc1f1d17, https://usegalaxy.org/published/workflow?id=a99a938953be5fd6, https://usegalaxy.org/published/workflow?id=adb86df9061dca2b, https://usegalaxy.org/published/workflow?id=af5d714396856e9a, https://usegalaxy.org/published/workflow?id=afd7633a34d68704, https://usegalaxy.org/published/workflow?id=b1dc9cf054a63be5, https://usegalaxy.org/published/workflow?id=b5e8f4a0ff226921, https://usegalaxy.org/published/workflow?id=b63d1e1024cc3295, https://usegalaxy.org/published/workflow?id=b78a75ae89ae4c79, https://usegalaxy.org/published/workflow?id=bb25ac3ba4863424, https://usegalaxy.org/published/workflow?id=c81833a367445f98, https://usegalaxy.org/published/workflow?id=ca36eebd59575df3, https://usegalaxy.org/published/workflow?id=cbbd7e95041d9429, https://usegalaxy.org/published/workflow?id=cd5f803c80875b9c, https://usegalaxy.org/published/workflow?id=cd824d8631d6a55e, https://usegalaxy.org/published/workflow?id=cf3320614654adfe, https://usegalaxy.org/published/workflow?id=d00ac64dcd07f91a, https://usegalaxy.org/published/workflow?id=d4029ce1344e874a, https://usegalaxy.org/published/workflow?id=d903c7215a88c79f, https://usegalaxy.org/published/workflow?id=dbc650d226e89013, https://usegalaxy.org/published/workflow?id=dcf658333596d76a, https://usegalaxy.org/published/workflow?id=de29cd965a2e93d3, https://usegalaxy.org/published/workflow?id=df24d76ebf13e3c1, https://usegalaxy.org/published/workflow?id=dff3cf6921b3d4d6, https://usegalaxy.org/published/workflow?id=e0ec503626fa0d58, https://usegalaxy.org/published/workflow?id=e42a07b777c9f9dc, https://usegalaxy.org/published/workflow?id=e58a87508a337b91, https://usegalaxy.org/published/workflow?id=e899acc664c8b808, https://usegalaxy.org/published/workflow?id=e9ffad95baa43478, https://usegalaxy.org/published/workflow?id=ea4c2defce2f5258, https://usegalaxy.org/published/workflow?id=eafe4aa62a600e1d, https://usegalaxy.org/published/workflow?id=ee3b8d7ba29da11c, https://usegalaxy.org/published/workflow?id=f0ee8bcd7c8fadca, https://usegalaxy.org/published/workflow?id=fcbe12fc4eaae12e, https://workflowhub.eu/workflows/1562?version=1, https://workflowhub.eu/workflows/1568?version=1, https://workflowhub.eu/workflows/399?version=19 |
epigenetics/atac-seq, epigenetics/cut_and_run |
|
peakzilla |
peakzilla |
Peakzilla identifies sites of enrichment and transcription factor binding sites from ChIP-seq and ChIP-exo experiments. |
2024-02-25 |
https://github.com/steinmann/peakzilla |
1.0 |
python |
|
To update |
ChIP-seq |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/peakzilla |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/peakzilla |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
13 |
40 |
40 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
40 |
40 |
13 |
13 |
|
|
|
pear |
iuc_pear |
PEAR evaluates all possible paired-end read overlaps |
2015-02-11 |
https://cme.h-its.org/exelixis/web/software/pear/ |
0.9.6 |
pear |
0.9.6 |
Up-to-date |
Fastq Manipulation |
Sequence merging |
Sequence merging |
Sequence assembly |
Sequence assembly |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/pear |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pear |
pear |
PEAR |
Paired-end read merger. PEAR evaluates all possible paired-end read overlaps without requiring the target fragment size as input. In addition, it implements a statistical test for minimizing false-positive results. |
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
312 |
344 |
7066 |
7728 |
542 |
1745 |
6436 |
21022 |
201 |
310 |
5173 |
8565 |
0 |
0 |
0 |
0 |
37315 |
18675 |
2399 |
1055 |
https://usegalaxy.eu/published/workflow?id=8f415b0c409f56f7, https://usegalaxy.org.au/published/workflow?id=14e80b7f9f68ec2a, https://usegalaxy.org/published/workflow?id=9a1fb6ecff886358, https://workflowhub.eu/workflows/232?version=1 |
|
|
pgxrpi |
pgx_freqplot, pgx_loader |
pgxLoader and pgxFreqplot functions from pgxRpi |
2025-02-27 |
https://github.com/progenetix/pgxRpi |
1.2.0 |
bioconductor-pgxrpi |
1.2.0 |
Up-to-date |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/pgxrpi |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pgxRpi |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
pharokka |
pharokka |
rapid standardised annotation tool for bacteriophage genomes and metagenomes |
2023-02-14 |
https://github.com/gbouras13/pharokka |
1.3.2 |
\n pharokka\n |
|
To update |
Genome annotation |
Genome annotation, Antimicrobial resistance prediction, tRNA gene prediction, Formatting, Sequence assembly |
Genome annotation, Antimicrobial resistance prediction, tRNA gene prediction, Formatting, Sequence assembly |
Metagenomics, Sequence sites, features and motifs, Workflows, Functional, regulatory and non-coding RNA |
Metagenomics, Sequence sites, features and motifs, Workflows, Functional, regulatory and non-coding RNA |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pharokka |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pharokka |
pharokka |
Pharokka |
Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes. |
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
490 |
490 |
10645 |
10645 |
0 |
0 |
0 |
0 |
82 |
82 |
713 |
713 |
0 |
0 |
0 |
0 |
11358 |
11358 |
572 |
572 |
|
|
|
phyloseq |
phyloseq_add_rank_names, phyloseq_from_biom, phyloseq_from_dada2, phyloseq_plot_bar, phyloseq_plot_ordination, phyloseq_plot_richness, phyloseq_tax_glom |
Handling and analysis of high-throughput microbiome census data |
2022-03-03 |
https://www.bioconductor.org/packages/release/bioc/html/phyloseq.html |
1.50.0 |
bioconductor-phyloseq |
1.50.0 |
Up-to-date |
Metagenomics |
Deposition, Analysis, Visualisation |
Deposition, Analysis, Visualisation |
Microbiology, Sequence analysis, Metagenomics |
Microbiology, Sequence analysis, Metagenomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/phyloseq |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/phyloseq |
phyloseq |
phyloseq |
Provides a set of classes and tools to facilitate the import, storage, analysis, and graphical display of microbiome census data. |
|
4 |
1 |
7 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
0 |
125 |
125 |
1879 |
1879 |
40 |
40 |
284 |
284 |
9 |
9 |
63 |
63 |
4 |
4 |
22 |
22 |
2248 |
2248 |
178 |
178 |
https://dev.workflowhub.eu/workflows/1105?version=2, https://usegalaxy.eu/published/workflow?id=466bdd8ba7b67264, https://usegalaxy.eu/published/workflow?id=e3918808605cf8cd, https://usegalaxy.org/published/workflow?id=4faff660f6defa10, https://workflowhub.eu/workflows/1395?version=2 |
microbiome/dada-16S |
|
phyml |
phyml |
PhyML is a phylogeny software based on the maximum-likelihood principle. |
2019-05-27 |
http://www.atgc-montpellier.fr/phyml/ |
3.3.20220408 |
phyml |
3.3.20220408 |
Up-to-date |
Phylogenetics |
Phylogenetic tree generation (maximum likelihood and Bayesian methods) |
|
Phylogenetics, Bioinformatics, Phylogenetics |
Phylogenetics, Bioinformatics, Phylogenetics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/phyml |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/phyml |
phyml |
PhyML |
Phylogenetic estimation software using Maximum Likelihood |
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
257 |
280 |
2048 |
2165 |
0 |
0 |
0 |
0 |
141 |
154 |
551 |
604 |
74 |
74 |
326 |
326 |
3095 |
2925 |
508 |
472 |
https://usegalaxy.fr/published/workflow?id=63b49f322ec366b5, https://usegalaxy.fr/published/workflow?id=894143d81af8dff0 |
|
|
picard |
picard_AddCommentsToBam, picard_AddOrReplaceReadGroups, picard_BedToIntervalList, picard_CleanSam, picard_CASM, picard_CollectBaseDistributionByCycle, picard_CollectGcBiasMetrics, picard_CollectHsMetrics, picard_CollectInsertSizeMetrics, picard_CollectRnaSeqMetrics, picard_artifact_metrics, picard_CollectWgsMetrics, picard_DownsampleSam, picard_EstimateLibraryComplexity, picard_FastqToSam, picard_FilterSamReads, picard_FixMateInformation, picard_MarkDuplicates, picard_MarkDuplicatesWithMateCigar, picard_MeanQualityByCycle, picard_MergeBamAlignment, picard_MergeSamFiles, picard_NormalizeFasta, picard_QualityScoreDistribution, picard_ReorderSam, picard_ReplaceSamHeader, picard_RevertOriginalBaseQualitiesAndAddMateCigar, picard_RevertSam, picard_SamToFastq, picard_SortSam, picard_ValidateSamFile |
Picard SAM/BAM manipulation tools. |
2017-01-11 |
http://broadinstitute.github.io/picard/ |
3.1.1 |
picard |
3.4.0 |
To update |
SAM |
Formatting |
Formatting |
Sequencing |
Sequencing |
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/picard |
picard_samtofastq |
picard_samtofastq |
Create a FASTQ file. |
|
31 |
31 |
31 |
31 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
31 |
4 |
31 |
0 |
0 |
0 |
0 |
0 |
31 |
0 |
0 |
0 |
0 |
31 |
31 |
31 |
0 |
5378 |
5775 |
413803 |
431825 |
11254 |
17366 |
375132 |
620168 |
1395 |
1493 |
59765 |
66382 |
851 |
851 |
24445 |
24854 |
1143229 |
873145 |
25485 |
18878 |
https://dev.workflowhub.eu/workflows/1074?version=2, https://dev.workflowhub.eu/workflows/1100?version=2, https://dev.workflowhub.eu/workflows/1115?version=2, https://dev.workflowhub.eu/workflows/1161?version=2, https://dev.workflowhub.eu/workflows/1169?version=2, https://dev.workflowhub.eu/workflows/1295?version=1, https://dev.workflowhub.eu/workflows/1299?version=2, https://dev.workflowhub.eu/workflows/1329?version=5, https://dev.workflowhub.eu/workflows/132?version=1, https://dev.workflowhub.eu/workflows/145?version=1, https://dev.workflowhub.eu/workflows/146?version=1, https://dev.workflowhub.eu/workflows/197?version=2, https://dev.workflowhub.eu/workflows/198?version=2, https://dev.workflowhub.eu/workflows/38?version=1, https://dev.workflowhub.eu/workflows/40?version=1, https://dev.workflowhub.eu/workflows/574?version=1, https://usegalaxy.eu/published/workflow?id=02655d0e4af0ee0d, https://usegalaxy.eu/published/workflow?id=03d1d2e0dc6e2024, https://usegalaxy.eu/published/workflow?id=0599f049e4697839, https://usegalaxy.eu/published/workflow?id=07b74e4cf53cb633, https://usegalaxy.eu/published/workflow?id=0a72d640d415e866, https://usegalaxy.eu/published/workflow?id=0c619b25c1394a09, https://usegalaxy.eu/published/workflow?id=0e5b701ed5ca69a7, https://usegalaxy.eu/published/workflow?id=1089e5c66dbcc1a3, https://usegalaxy.eu/published/workflow?id=111527fe542846af, https://usegalaxy.eu/published/workflow?id=112422839b68db02, https://usegalaxy.eu/published/workflow?id=146cef3acb2eba75, https://usegalaxy.eu/published/workflow?id=153ba1581743d31f, https://usegalaxy.eu/published/workflow?id=1761092d0e7deece, https://usegalaxy.eu/published/workflow?id=1b38e0d69e366be1, https://usegalaxy.eu/published/workflow?id=1c5588d6ac7f773f, https://usegalaxy.eu/published/workflow?id=1dba8278fb2786fb, https://usegalaxy.eu/published/workflow?id=1ee43d90b69829e9, https://usegalaxy.eu/published/workflow?id=22454322d370b3ff, https://usegalaxy.eu/published/workflow?id=24ddd188da35b061, https://usegalaxy.eu/published/workflow?id=24eaa682897379c8, https://usegalaxy.eu/published/workflow?id=25aa944237d7fb82, https://usegalaxy.eu/published/workflow?id=291c36e1b18e9deb, https://usegalaxy.eu/published/workflow?id=2a13eb981d6ee36e, https://usegalaxy.eu/published/workflow?id=2a39dbc8fc6dd5d3, https://usegalaxy.eu/published/workflow?id=2c5cae1389c11881, https://usegalaxy.eu/published/workflow?id=2f1ee01aeee2b9f0, https://usegalaxy.eu/published/workflow?id=2f51a82838722bec, https://usegalaxy.eu/published/workflow?id=30e7dc81e323cbdb, https://usegalaxy.eu/published/workflow?id=36a4646959829018, https://usegalaxy.eu/published/workflow?id=3828466d773e508c, https://usegalaxy.eu/published/workflow?id=3b7c0b64033f38ac, https://usegalaxy.eu/published/workflow?id=3b8ef7905c902b27, https://usegalaxy.eu/published/workflow?id=41b5f0d519404df7, https://usegalaxy.eu/published/workflow?id=44c92c04f1d14631, https://usegalaxy.eu/published/workflow?id=45f63151bf4f1a49, https://usegalaxy.eu/published/workflow?id=478190607a114390, https://usegalaxy.eu/published/workflow?id=48f63ef14a12f306, https://usegalaxy.eu/published/workflow?id=49ce9e738fadef4a, https://usegalaxy.eu/published/workflow?id=4a764275d4bf9f31, https://usegalaxy.eu/published/workflow?id=4daa0c33d6d50379, https://usegalaxy.eu/published/workflow?id=4f40ae432d8a4259, https://usegalaxy.eu/published/workflow?id=5138874b208adb4b, https://usegalaxy.eu/published/workflow?id=5279af5c95ae4f7a, https://usegalaxy.eu/published/workflow?id=533819bcb5aa78c5, https://usegalaxy.eu/published/workflow?id=5395e76fa828c343, https://usegalaxy.eu/published/workflow?id=54b91dd86f463391, https://usegalaxy.eu/published/workflow?id=57769c948e14f9ac, https://usegalaxy.eu/published/workflow?id=591ebf913450f49e, https://usegalaxy.eu/published/workflow?id=5a16af00bf8bf57b, https://usegalaxy.eu/published/workflow?id=5e3c352233aa7a52, https://usegalaxy.eu/published/workflow?id=5ec0d6d108e02e1a, https://usegalaxy.eu/published/workflow?id=614807d57979554c, https://usegalaxy.eu/published/workflow?id=6514e610c79df72c, https://usegalaxy.eu/published/workflow?id=6be946c7ec91835e, https://usegalaxy.eu/published/workflow?id=74e4a8f2edb25f1a, https://usegalaxy.eu/published/workflow?id=7aa0af193da74f60, https://usegalaxy.eu/published/workflow?id=7b4a9aebb09b51ca, https://usegalaxy.eu/published/workflow?id=7b7ef222ac4f9887, https://usegalaxy.eu/published/workflow?id=7cc253b53379b727, https://usegalaxy.eu/published/workflow?id=7e0ba4c14803448e, https://usegalaxy.eu/published/workflow?id=7ef7b460143211df, https://usegalaxy.eu/published/workflow?id=81122d30c64a52a6, https://usegalaxy.eu/published/workflow?id=8132c3b710fd6d48, https://usegalaxy.eu/published/workflow?id=82a60d94d699efbf, https://usegalaxy.eu/published/workflow?id=830eb4faff21eb0c, https://usegalaxy.eu/published/workflow?id=865f470be3c18b08, https://usegalaxy.eu/published/workflow?id=88064e2231165fd2, https://usegalaxy.eu/published/workflow?id=8ab6a554cdea5195, https://usegalaxy.eu/published/workflow?id=8fb156020285e049, https://usegalaxy.eu/published/workflow?id=9155ed0e7a6a7b60, https://usegalaxy.eu/published/workflow?id=93a7047396080fda, https://usegalaxy.eu/published/workflow?id=93e32219d412c1f1, https://usegalaxy.eu/published/workflow?id=94b9287365ea4d0d, https://usegalaxy.eu/published/workflow?id=985044b4b2c51425, https://usegalaxy.eu/published/workflow?id=99022559adf01c4a, https://usegalaxy.eu/published/workflow?id=99799eec4497f977, https://usegalaxy.eu/published/workflow?id=9c24df68dc7d25a4, https://usegalaxy.eu/published/workflow?id=9eda857e4141d56e, https://usegalaxy.eu/published/workflow?id=a28c207730e7e13d, https://usegalaxy.eu/published/workflow?id=a2d4221ad117c378, https://usegalaxy.eu/published/workflow?id=a461ea397418f3aa, https://usegalaxy.eu/published/workflow?id=a62f21701ff37788, https://usegalaxy.eu/published/workflow?id=a9e1a6b90dbd2518, https://usegalaxy.eu/published/workflow?id=ad4b347f9b68e127, https://usegalaxy.eu/published/workflow?id=ad609d1a3de251f5, https://usegalaxy.eu/published/workflow?id=b02d90c32dc67730, https://usegalaxy.eu/published/workflow?id=b619339f4e1c6fdf, https://usegalaxy.eu/published/workflow?id=bebcbd6f0ffa55c5, https://usegalaxy.eu/published/workflow?id=c00fe92f9a579a15, https://usegalaxy.eu/published/workflow?id=c084c2009f6b2d0a, https://usegalaxy.eu/published/workflow?id=c0d1e965daf89006, https://usegalaxy.eu/published/workflow?id=c2af7a5dbfb5b023, https://usegalaxy.eu/published/workflow?id=c377b21d2be45a57, https://usegalaxy.eu/published/workflow?id=c3eba26c5d7febff, https://usegalaxy.eu/published/workflow?id=c5e6047b3b256b06, https://usegalaxy.eu/published/workflow?id=c9aff55e39e195e3, https://usegalaxy.eu/published/workflow?id=cc37667c2d1f9056, https://usegalaxy.eu/published/workflow?id=cd926dd6b70e72d6, https://usegalaxy.eu/published/workflow?id=cfe47f0c78ed5ec4, https://usegalaxy.eu/published/workflow?id=d12617d0df5f81d0, https://usegalaxy.eu/published/workflow?id=d768c0e0df4d432e, https://usegalaxy.eu/published/workflow?id=d83280cd72ec0f33, https://usegalaxy.eu/published/workflow?id=dd3193aaaf08e798, https://usegalaxy.eu/published/workflow?id=e97b938ca4723827, https://usegalaxy.eu/published/workflow?id=ea0524e0b5eab8b9, https://usegalaxy.eu/published/workflow?id=ee0005a5487653ba, https://usegalaxy.eu/published/workflow?id=f14ebad1c3c20067, https://usegalaxy.eu/published/workflow?id=f5005e80d9ffa109, https://usegalaxy.eu/published/workflow?id=f54b4d76f7f9a589, https://usegalaxy.eu/published/workflow?id=f560e06d23818b4c, https://usegalaxy.eu/published/workflow?id=f6b55599db1ab056, https://usegalaxy.fr/published/workflow?id=54b48eeeed3564dd, https://usegalaxy.fr/published/workflow?id=57b5a45c9f71a09c, https://usegalaxy.fr/published/workflow?id=5d83e0886f2a7465, https://usegalaxy.fr/published/workflow?id=776ef2fa51094ba6, https://usegalaxy.fr/published/workflow?id=826cffb2458e4067, https://usegalaxy.fr/published/workflow?id=bffee40c87c7b20a, https://usegalaxy.fr/published/workflow?id=c7be6e229a045fad, https://usegalaxy.fr/published/workflow?id=ca0bd0e42cb774f9, https://usegalaxy.org.au/published/workflow?id=06ba34da322f46f1, https://usegalaxy.org.au/published/workflow?id=0f48060aa1bd41a5, https://usegalaxy.org.au/published/workflow?id=0f7406ada6706c91, https://usegalaxy.org.au/published/workflow?id=14e80b7f9f68ec2a, https://usegalaxy.org.au/published/workflow?id=1dd4392c51766383, https://usegalaxy.org.au/published/workflow?id=2362ff8880213586, https://usegalaxy.org.au/published/workflow?id=25403321a649a92b, https://usegalaxy.org.au/published/workflow?id=27205feb28b0ce06, https://usegalaxy.org.au/published/workflow?id=2789fb3590727342, https://usegalaxy.org.au/published/workflow?id=2980172ed0226b59, https://usegalaxy.org.au/published/workflow?id=2f520cb446adf726, https://usegalaxy.org.au/published/workflow?id=30a601039d24e2eb, https://usegalaxy.org.au/published/workflow?id=31dbd313e5c8160b, https://usegalaxy.org.au/published/workflow?id=32d28f800adcea42, https://usegalaxy.org.au/published/workflow?id=38f57cffaeb0e39f, https://usegalaxy.org.au/published/workflow?id=39b464084d930a33, https://usegalaxy.org.au/published/workflow?id=3b6e9f03b088bf01, https://usegalaxy.org.au/published/workflow?id=3c1b1f210c7c292b, https://usegalaxy.org.au/published/workflow?id=3c7b55daae7c119b, https://usegalaxy.org.au/published/workflow?id=3d5deed70ac9bde4, https://usegalaxy.org.au/published/workflow?id=3e6f755ee62f7301, https://usegalaxy.org.au/published/workflow?id=3e7fcfd23872ad0d, https://usegalaxy.org.au/published/workflow?id=3f39cf407c185724, https://usegalaxy.org.au/published/workflow?id=41bd0340dcde60ec, https://usegalaxy.org.au/published/workflow?id=49b5c35b9723fa62, https://usegalaxy.org.au/published/workflow?id=51b745f8c964e5c6, https://usegalaxy.org.au/published/workflow?id=52056336f24eccf6, https://usegalaxy.org.au/published/workflow?id=557601292ea0f6f3, https://usegalaxy.org.au/published/workflow?id=57b558e1a76c09e1, https://usegalaxy.org.au/published/workflow?id=6a04c54236f30e8d, https://usegalaxy.org.au/published/workflow?id=6b3df543536faf8c, https://usegalaxy.org.au/published/workflow?id=6de8899c40a90b98, https://usegalaxy.org.au/published/workflow?id=75113a1b41904d2a, https://usegalaxy.org.au/published/workflow?id=76bb6bde19975e05, https://usegalaxy.org.au/published/workflow?id=79f4bdf9aab7c256, https://usegalaxy.org.au/published/workflow?id=8215e0eb265e03a3, https://usegalaxy.org.au/published/workflow?id=84c98a23187d2a36, https://usegalaxy.org.au/published/workflow?id=85aede91db0122e4, https://usegalaxy.org.au/published/workflow?id=869440d35a618836, https://usegalaxy.org.au/published/workflow?id=8b955274ca3ca3dc, https://usegalaxy.org.au/published/workflow?id=99821674db7682bb, https://usegalaxy.org.au/published/workflow?id=a29670ff0ecb1a38, https://usegalaxy.org.au/published/workflow?id=a484cdc9ff9d7e9e, https://usegalaxy.org.au/published/workflow?id=a5ccbb9aced9ac53, https://usegalaxy.org.au/published/workflow?id=a8ec08a1408cd6e7, https://usegalaxy.org.au/published/workflow?id=a9068ea858222e2b, https://usegalaxy.org.au/published/workflow?id=ae894cff1d1aba01, https://usegalaxy.org.au/published/workflow?id=af7b95f46485308c, https://usegalaxy.org.au/published/workflow?id=b08342866a118a5e, https://usegalaxy.org.au/published/workflow?id=b20f28151e46d3e0, https://usegalaxy.org.au/published/workflow?id=b53f82aaf32fbaa9, https://usegalaxy.org.au/published/workflow?id=ba30cc4a84c449f9, https://usegalaxy.org.au/published/workflow?id=bd1cf22d47389742, https://usegalaxy.org.au/published/workflow?id=bf80ef6e5f37deb7, https://usegalaxy.org.au/published/workflow?id=c38b998d3e90c329, https://usegalaxy.org.au/published/workflow?id=c87c1f8c4eff415a, https://usegalaxy.org.au/published/workflow?id=ca7fc6e2adbf1f26, https://usegalaxy.org.au/published/workflow?id=ccf936c5b2f2c2f3, https://usegalaxy.org.au/published/workflow?id=ce7f6a1c824920e2, https://usegalaxy.org.au/published/workflow?id=d3521c05077192df, https://usegalaxy.org.au/published/workflow?id=d62b6717202f42c9, https://usegalaxy.org.au/published/workflow?id=d69a765cfc82a399, https://usegalaxy.org.au/published/workflow?id=d7c329b354f4426d, https://usegalaxy.org.au/published/workflow?id=db322fe56af3ee5b, https://usegalaxy.org.au/published/workflow?id=e0b89b4e50d1a99b, https://usegalaxy.org.au/published/workflow?id=e1fd89e7248b6661, https://usegalaxy.org.au/published/workflow?id=fa4fa7353dffef9a, https://usegalaxy.org.au/published/workflow?id=fba0eb562a710733, https://usegalaxy.org.au/published/workflow?id=fe4e34a407157389, https://usegalaxy.org.au/published/workflow?id=fedf2874752ac1f6, https://usegalaxy.org/published/workflow?id=00bc4e99626da1ba, https://usegalaxy.org/published/workflow?id=01585f1230125ba1, https://usegalaxy.org/published/workflow?id=02755c14619242da, https://usegalaxy.org/published/workflow?id=02c96a9c6bb708ac, https://usegalaxy.org/published/workflow?id=044c5ce43f2e1829, https://usegalaxy.org/published/workflow?id=049e6609da2b67c4, https://usegalaxy.org/published/workflow?id=05bf642dc7c58c40, https://usegalaxy.org/published/workflow?id=05ed292f512db24e, https://usegalaxy.org/published/workflow?id=0660a00407fc16a1, https://usegalaxy.org/published/workflow?id=06d6dcd2655592af, https://usegalaxy.org/published/workflow?id=0843c6f15eae2f15, https://usegalaxy.org/published/workflow?id=08da44d18689dffc, https://usegalaxy.org/published/workflow?id=0a57740c68e85e21, https://usegalaxy.org/published/workflow?id=0a89328e6d28dd07, https://usegalaxy.org/published/workflow?id=0c6dbb2ef5eee5b9, https://usegalaxy.org/published/workflow?id=0cbab8b7044d24f9, https://usegalaxy.org/published/workflow?id=0d8eb75d28fa7df2, https://usegalaxy.org/published/workflow?id=0d8ec47a84766f96, https://usegalaxy.org/published/workflow?id=0ebb1f5b6c9c8ab9, https://usegalaxy.org/published/workflow?id=0f43fdfe1824e9d7, https://usegalaxy.org/published/workflow?id=0f8b4fd0bf276968, https://usegalaxy.org/published/workflow?id=10c2136973c88d8a, https://usegalaxy.org/published/workflow?id=10d8d47f97afc999, https://usegalaxy.org/published/workflow?id=1250ec3ad6199cda, https://usegalaxy.org/published/workflow?id=13a1fa4f6daf65cc, https://usegalaxy.org/published/workflow?id=150e288c2c2fe9e9, https://usegalaxy.org/published/workflow?id=156e245e3d9f22ce, https://usegalaxy.org/published/workflow?id=15a0e22570f71098, https://usegalaxy.org/published/workflow?id=15ea806eaf077617, https://usegalaxy.org/published/workflow?id=172ee5e5bef33d2e, https://usegalaxy.org/published/workflow?id=17a7ff756d37a437, https://usegalaxy.org/published/workflow?id=17a969fa9ac02cec, https://usegalaxy.org/published/workflow?id=17f3d7e52777d2e8, https://usegalaxy.org/published/workflow?id=195f7acb16c5a2e2, https://usegalaxy.org/published/workflow?id=1b4ac2bc54435ae4, https://usegalaxy.org/published/workflow?id=1d1ee1fad4e20eeb, https://usegalaxy.org/published/workflow?id=1d748868e78275dd, https://usegalaxy.org/published/workflow?id=1d8227ad3f3651a0, https://usegalaxy.org/published/workflow?id=1dd63a7b4c6f4c83, https://usegalaxy.org/published/workflow?id=1ddabc7d272dc702, https://usegalaxy.org/published/workflow?id=1deaf458d6d8695a, https://usegalaxy.org/published/workflow?id=1e1d7fac7e241768, https://usegalaxy.org/published/workflow?id=1e53fcd07ae5d859, https://usegalaxy.org/published/workflow?id=1e6a0d6395cf6221, https://usegalaxy.org/published/workflow?id=1f4dc0488f0554c6, https://usegalaxy.org/published/workflow?id=1fdd58f4b7a6f643, https://usegalaxy.org/published/workflow?id=1ffc71df8eeed57e, https://usegalaxy.org/published/workflow?id=20023b26bb60f4df, https://usegalaxy.org/published/workflow?id=202648c6c615929b, https://usegalaxy.org/published/workflow?id=20fe561687df596c, https://usegalaxy.org/published/workflow?id=21a047a4e068860f, https://usegalaxy.org/published/workflow?id=22f6b939e97d3b47, https://usegalaxy.org/published/workflow?id=23c4e801213eee50, https://usegalaxy.org/published/workflow?id=23eeee48217654d4, https://usegalaxy.org/published/workflow?id=24663ad42c78106c, https://usegalaxy.org/published/workflow?id=2497103d279cd20e, https://usegalaxy.org/published/workflow?id=2524e026f069e885, https://usegalaxy.org/published/workflow?id=262ab42118016c41, https://usegalaxy.org/published/workflow?id=2644a8c0da3066c5, https://usegalaxy.org/published/workflow?id=26b35874b9e32355, https://usegalaxy.org/published/workflow?id=26c4909f2f3df704, https://usegalaxy.org/published/workflow?id=270e2cb6b02afc9c, https://usegalaxy.org/published/workflow?id=28abac549697f65a, https://usegalaxy.org/published/workflow?id=291829fed6fa7c44, https://usegalaxy.org/published/workflow?id=2957924403998f3a, https://usegalaxy.org/published/workflow?id=2af3de32c630e1b4, https://usegalaxy.org/published/workflow?id=2b5346b94358df88, https://usegalaxy.org/published/workflow?id=2bf89464c21ec7cd, https://usegalaxy.org/published/workflow?id=2cc5472ad7c039d1, https://usegalaxy.org/published/workflow?id=2ceff2cf26eae4cd, https://usegalaxy.org/published/workflow?id=2d30be556aab1f52, https://usegalaxy.org/published/workflow?id=2db2d27f0c627f44, https://usegalaxy.org/published/workflow?id=2dd4f04c7de7d173, https://usegalaxy.org/published/workflow?id=2ded909e7e3a9962, https://usegalaxy.org/published/workflow?id=2e029537d2f4ab50, https://usegalaxy.org/published/workflow?id=2e65bc5f9d9f2a75, https://usegalaxy.org/published/workflow?id=2f21358621337cf2, https://usegalaxy.org/published/workflow?id=30ba39be60ec29be, https://usegalaxy.org/published/workflow?id=31acbfc6d3775846, https://usegalaxy.org/published/workflow?id=325783f21bc5fef6, https://usegalaxy.org/published/workflow?id=326ced2230a49c26, https://usegalaxy.org/published/workflow?id=32c769241ffce3d1, https://usegalaxy.org/published/workflow?id=336795e890851c21, https://usegalaxy.org/published/workflow?id=33ae58f05e5e1d60, https://usegalaxy.org/published/workflow?id=34ab5572a9547bfe, https://usegalaxy.org/published/workflow?id=3565de0b5f5da36f, https://usegalaxy.org/published/workflow?id=35c2626849348f2c, https://usegalaxy.org/published/workflow?id=3673a1ced343d0d0, https://usegalaxy.org/published/workflow?id=3686146fc097c66f, https://usegalaxy.org/published/workflow?id=36bd1c3d32150b90, https://usegalaxy.org/published/workflow?id=38cc6577c9b15275, https://usegalaxy.org/published/workflow?id=39753cc73284963f, https://usegalaxy.org/published/workflow?id=399b4543d26990f2, https://usegalaxy.org/published/workflow?id=39e79458c9ba581c, https://usegalaxy.org/published/workflow?id=3bed12ef73ba93bf, https://usegalaxy.org/published/workflow?id=3d0ba2f11f370e05, https://usegalaxy.org/published/workflow?id=3d5347f1e8ee7db2, https://usegalaxy.org/published/workflow?id=3dc57709c4387ba7, https://usegalaxy.org/published/workflow?id=3f2d1003ff959c7c, https://usegalaxy.org/published/workflow?id=4054ceeba1a2fa69, https://usegalaxy.org/published/workflow?id=415c7152cb78e86f, https://usegalaxy.org/published/workflow?id=4164a02a6bd70893, https://usegalaxy.org/published/workflow?id=41bbf3cd893d400a, https://usegalaxy.org/published/workflow?id=424acfc2ded46f9f, https://usegalaxy.org/published/workflow?id=43861b38cf6e927e, https://usegalaxy.org/published/workflow?id=43ca7614f6bb03d2, https://usegalaxy.org/published/workflow?id=4458439388155d92, https://usegalaxy.org/published/workflow?id=446a9297e64ecb72, https://usegalaxy.org/published/workflow?id=449a419bcfd3c49e, https://usegalaxy.org/published/workflow?id=46d035f814a9b4f8, https://usegalaxy.org/published/workflow?id=46e4acdc08eb3ea5, https://usegalaxy.org/published/workflow?id=46e718fb8eeb4d54, https://usegalaxy.org/published/workflow?id=470b41d0e43bb46b, https://usegalaxy.org/published/workflow?id=472f73c3e81da1d9, https://usegalaxy.org/published/workflow?id=4790266996f12979, https://usegalaxy.org/published/workflow?id=49f8b32c3206f76c, https://usegalaxy.org/published/workflow?id=4a01263e3d4b4edb, https://usegalaxy.org/published/workflow?id=4cbb8181cfdf55d9, https://usegalaxy.org/published/workflow?id=4d0607d3589e0775, https://usegalaxy.org/published/workflow?id=4d251ecda59c87c5, https://usegalaxy.org/published/workflow?id=4dbac8374419d29e, https://usegalaxy.org/published/workflow?id=4de095b92ed661ac, https://usegalaxy.org/published/workflow?id=4e3efbdd0c4c3e64, https://usegalaxy.org/published/workflow?id=4ed9f54caa932479, https://usegalaxy.org/published/workflow?id=4f459cfef6108e75, https://usegalaxy.org/published/workflow?id=4fcfea3a6691e18b, https://usegalaxy.org/published/workflow?id=50206b10de958d03, https://usegalaxy.org/published/workflow?id=506acac8c6a58d5e, https://usegalaxy.org/published/workflow?id=51754f5039d2f244, https://usegalaxy.org/published/workflow?id=51d80a44d7d6fff7, https://usegalaxy.org/published/workflow?id=527adadecbab2eb6, https://usegalaxy.org/published/workflow?id=528ed34505b1a993, https://usegalaxy.org/published/workflow?id=529c6c68df669c51, https://usegalaxy.org/published/workflow?id=52b7524a3941885c, https://usegalaxy.org/published/workflow?id=52bde903adbbaf60, https://usegalaxy.org/published/workflow?id=52e20808e37c8afd, https://usegalaxy.org/published/workflow?id=52e2b69787ca7a17, https://usegalaxy.org/published/workflow?id=533b1d5d08f9943e, https://usegalaxy.org/published/workflow?id=53dda64a5a6ebd54, https://usegalaxy.org/published/workflow?id=53f11afc67ffb66f, https://usegalaxy.org/published/workflow?id=553125cd799e5982, https://usegalaxy.org/published/workflow?id=55c09bcdf3d7ae16, https://usegalaxy.org/published/workflow?id=5641d1cbe795203f, https://usegalaxy.org/published/workflow?id=57726b39bbfb0c54, https://usegalaxy.org/published/workflow?id=57cfc1b5d9ea0d72, https://usegalaxy.org/published/workflow?id=57f4c6f5206edfcb, https://usegalaxy.org/published/workflow?id=58eeb06f911e8410, https://usegalaxy.org/published/workflow?id=59007e2bc9c807ee, https://usegalaxy.org/published/workflow?id=5951d11d3122abed, https://usegalaxy.org/published/workflow?id=59659e3a065c642c, https://usegalaxy.org/published/workflow?id=5a16ff38eb80da82, https://usegalaxy.org/published/workflow?id=5a55d9bd9701b1ce, https://usegalaxy.org/published/workflow?id=5a610d5a42d50cf3, https://usegalaxy.org/published/workflow?id=5b2a0da883be03b7, https://usegalaxy.org/published/workflow?id=5b3e2ddf525da25d, https://usegalaxy.org/published/workflow?id=5bcd1aade71a8035, https://usegalaxy.org/published/workflow?id=5c4ce4a781317ebb, https://usegalaxy.org/published/workflow?id=5cad854edbbd3b69, https://usegalaxy.org/published/workflow?id=5ccc7d708e13de60, https://usegalaxy.org/published/workflow?id=5ce5b3061c6afd82, https://usegalaxy.org/published/workflow?id=5d1208bd49f97aeb, https://usegalaxy.org/published/workflow?id=5eb2e090df59d9a9, https://usegalaxy.org/published/workflow?id=5fa548beeb1411f2, https://usegalaxy.org/published/workflow?id=5ffeb9904cf5f0bf, https://usegalaxy.org/published/workflow?id=607d1683d6e26cef, https://usegalaxy.org/published/workflow?id=60b9910b7bb69f47, https://usegalaxy.org/published/workflow?id=60e999ef3dcff4ca, https://usegalaxy.org/published/workflow?id=612452c925d723b7, https://usegalaxy.org/published/workflow?id=61d03396ad7f25b9, https://usegalaxy.org/published/workflow?id=6229546fb8b0eba9, https://usegalaxy.org/published/workflow?id=62436fe121e035e7, https://usegalaxy.org/published/workflow?id=62ae08ab1133c22f, https://usegalaxy.org/published/workflow?id=62b052f47ccf0a8c, https://usegalaxy.org/published/workflow?id=62c842e67fca5ab7, https://usegalaxy.org/published/workflow?id=63e0dcf18794dbc1, https://usegalaxy.org/published/workflow?id=64a329cf75834d6b, https://usegalaxy.org/published/workflow?id=658f6e4985b6e4a7, https://usegalaxy.org/published/workflow?id=668df61f85b5b166, https://usegalaxy.org/published/workflow?id=672125473ec700bc, https://usegalaxy.org/published/workflow?id=676fa9af68f6a763, https://usegalaxy.org/published/workflow?id=67992bf894a82587, https://usegalaxy.org/published/workflow?id=67e3457099db3ed2, https://usegalaxy.org/published/workflow?id=67e56a9919ed84f7, https://usegalaxy.org/published/workflow?id=6822f413a3b09cb4, https://usegalaxy.org/published/workflow?id=68495cc8ec3d46df, https://usegalaxy.org/published/workflow?id=688a55b9ec2f5bf7, https://usegalaxy.org/published/workflow?id=68d05aae72fcd2c9, https://usegalaxy.org/published/workflow?id=692a2b0bb818336d, https://usegalaxy.org/published/workflow?id=69363bab20c5ca6c, https://usegalaxy.org/published/workflow?id=695152887ca01bf0, https://usegalaxy.org/published/workflow?id=695d20ef3ee4cf1e, https://usegalaxy.org/published/workflow?id=6a08af55c086ec62, https://usegalaxy.org/published/workflow?id=6a174e7498434bd5, https://usegalaxy.org/published/workflow?id=6c68072bf72e6c4a, https://usegalaxy.org/published/workflow?id=6c95a357a3c1f399, https://usegalaxy.org/published/workflow?id=6cb8b40b819f2764, https://usegalaxy.org/published/workflow?id=6d60c4491138813a, https://usegalaxy.org/published/workflow?id=6d8f0be547b12528, https://usegalaxy.org/published/workflow?id=6db96a9c7e4b8d14, https://usegalaxy.org/published/workflow?id=6dd383fd86fea674, https://usegalaxy.org/published/workflow?id=6ea1bd64873b6c18, https://usegalaxy.org/published/workflow?id=6fa88ca75caba8e4, https://usegalaxy.org/published/workflow?id=71f129d96b81851e, https://usegalaxy.org/published/workflow?id=71f8a4090877f171, https://usegalaxy.org/published/workflow?id=7203eb3b663bca11, https://usegalaxy.org/published/workflow?id=725f7ffa1cffa069, https://usegalaxy.org/published/workflow?id=729780617ceb80db, https://usegalaxy.org/published/workflow?id=75fffbce810acaf3, https://usegalaxy.org/published/workflow?id=76247065c01f01d1, https://usegalaxy.org/published/workflow?id=7757cd56fa4d060c, https://usegalaxy.org/published/workflow?id=775e67dc75f741b8, https://usegalaxy.org/published/workflow?id=779ea0b19d07a1bd, https://usegalaxy.org/published/workflow?id=786aa9e2bd723629, https://usegalaxy.org/published/workflow?id=789647a199e563fd, https://usegalaxy.org/published/workflow?id=78979ec454b98338, https://usegalaxy.org/published/workflow?id=7965d84a9f71da93, https://usegalaxy.org/published/workflow?id=7a2b4675c758f34e, https://usegalaxy.org/published/workflow?id=7b9e17cb1d72d7e4, https://usegalaxy.org/published/workflow?id=7c4a2339b17a8930, https://usegalaxy.org/published/workflow?id=7d110e1fca0ac973, https://usegalaxy.org/published/workflow?id=7d6617b8316cee19, https://usegalaxy.org/published/workflow?id=7decdde67868ed0f, https://usegalaxy.org/published/workflow?id=7e9269e78e989480, https://usegalaxy.org/published/workflow?id=7fb4dae5daab0522, https://usegalaxy.org/published/workflow?id=803215ef8142c069, https://usegalaxy.org/published/workflow?id=803aec95399f7073, https://usegalaxy.org/published/workflow?id=8041fad92ef6e904, https://usegalaxy.org/published/workflow?id=8095deba606ebd5e, https://usegalaxy.org/published/workflow?id=80b12b6e7ac8861f, https://usegalaxy.org/published/workflow?id=840a7be198dc8ae4, https://usegalaxy.org/published/workflow?id=842c09b49c456429, https://usegalaxy.org/published/workflow?id=85bc37a59a6ea443, https://usegalaxy.org/published/workflow?id=865d2cc4d14ec7e1, https://usegalaxy.org/published/workflow?id=8689dc9eac10c871, https://usegalaxy.org/published/workflow?id=86b802ea75d18160, https://usegalaxy.org/published/workflow?id=87c1bdc00b975377, https://usegalaxy.org/published/workflow?id=884ee0057bde9135, https://usegalaxy.org/published/workflow?id=885f0e66fa6b8790, https://usegalaxy.org/published/workflow?id=88e10493f7e6b9d5, https://usegalaxy.org/published/workflow?id=89660361d4121fa8, https://usegalaxy.org/published/workflow?id=8a215695e7b57cf5, https://usegalaxy.org/published/workflow?id=8b08a05c5926dd0f, https://usegalaxy.org/published/workflow?id=8b133c1d302c8681, https://usegalaxy.org/published/workflow?id=8bf608c6fd0dabd0, https://usegalaxy.org/published/workflow?id=8c1516493c55bf7d, https://usegalaxy.org/published/workflow?id=8caea3788657235d, https://usegalaxy.org/published/workflow?id=8daa91d54040ba95, https://usegalaxy.org/published/workflow?id=8e2b2a40831dfb08, https://usegalaxy.org/published/workflow?id=906cc2c2d4e24483, https://usegalaxy.org/published/workflow?id=907aaf55487ddf43, https://usegalaxy.org/published/workflow?id=914ec4d8fc0022e4, https://usegalaxy.org/published/workflow?id=916a116b69ac5eeb, https://usegalaxy.org/published/workflow?id=91806144e90637e8, https://usegalaxy.org/published/workflow?id=9255c0c9017b139f, https://usegalaxy.org/published/workflow?id=9373050c3ce80d56, https://usegalaxy.org/published/workflow?id=93cb976bd4ae546e, https://usegalaxy.org/published/workflow?id=958f78270fc8f55c, https://usegalaxy.org/published/workflow?id=96ae2544e22d34c5, https://usegalaxy.org/published/workflow?id=9763787d7b102f39, https://usegalaxy.org/published/workflow?id=97c20a819394e381, https://usegalaxy.org/published/workflow?id=98286b6154e1b57f, https://usegalaxy.org/published/workflow?id=98a4b90f7fc2bfce, https://usegalaxy.org/published/workflow?id=99bc7ba3faa7ed55, https://usegalaxy.org/published/workflow?id=99ee567c092fb34c, https://usegalaxy.org/published/workflow?id=9b32025036bdacb9, https://usegalaxy.org/published/workflow?id=9b81d47a468d6f99, https://usegalaxy.org/published/workflow?id=9c0bbf9e1c90cd66, https://usegalaxy.org/published/workflow?id=9d2d8c39b63d8ef0, https://usegalaxy.org/published/workflow?id=9d456396b9cd79d7, https://usegalaxy.org/published/workflow?id=9d626a89800a96ca, https://usegalaxy.org/published/workflow?id=9db607d8d1cdcc25, https://usegalaxy.org/published/workflow?id=9e9a027e0c294a79, https://usegalaxy.org/published/workflow?id=9eb29b71d7effefc, https://usegalaxy.org/published/workflow?id=9f5f2e309a3ea50c, https://usegalaxy.org/published/workflow?id=a164d857439a126f, https://usegalaxy.org/published/workflow?id=a2046dd883227b49, https://usegalaxy.org/published/workflow?id=a37961bf3d435918, https://usegalaxy.org/published/workflow?id=a3f7a57dbf8f0741, https://usegalaxy.org/published/workflow?id=a4a56efb37d845bf, https://usegalaxy.org/published/workflow?id=a4f7af1e2cd826c3, https://usegalaxy.org/published/workflow?id=a89008fccc1f1d17, https://usegalaxy.org/published/workflow?id=a89eaad3f42ec41c, https://usegalaxy.org/published/workflow?id=a986e4991fc61c92, https://usegalaxy.org/published/workflow?id=a98a3ac1a41752bc, https://usegalaxy.org/published/workflow?id=a99a938953be5fd6, https://usegalaxy.org/published/workflow?id=aa9def6ec8f13b3a, https://usegalaxy.org/published/workflow?id=ab6e4277fc825c5d, https://usegalaxy.org/published/workflow?id=ab8590a0ee1b9951, https://usegalaxy.org/published/workflow?id=ace738014a7278b0, https://usegalaxy.org/published/workflow?id=ad6143e2f74e1e94, https://usegalaxy.org/published/workflow?id=adb86df9061dca2b, https://usegalaxy.org/published/workflow?id=adf531bc12766c9b, https://usegalaxy.org/published/workflow?id=ae83fb92e697e009, https://usegalaxy.org/published/workflow?id=af5acb5dd7bfac56, https://usegalaxy.org/published/workflow?id=af5d714396856e9a, https://usegalaxy.org/published/workflow?id=af71519c81429287, https://usegalaxy.org/published/workflow?id=afd7633a34d68704, https://usegalaxy.org/published/workflow?id=b0b6dfa166b0d873, https://usegalaxy.org/published/workflow?id=b1004c9974ceb785, https://usegalaxy.org/published/workflow?id=b11796364c22235e, https://usegalaxy.org/published/workflow?id=b16a1642e2cd54a2, https://usegalaxy.org/published/workflow?id=b19a9163c26f1270, https://usegalaxy.org/published/workflow?id=b1dc9cf054a63be5, https://usegalaxy.org/published/workflow?id=b2176abeb937f026, https://usegalaxy.org/published/workflow?id=b232caf4a1e1b7ee, https://usegalaxy.org/published/workflow?id=b26501a4a85bfdeb, https://usegalaxy.org/published/workflow?id=b300d028da9b8396, https://usegalaxy.org/published/workflow?id=b3026f28a45626a5, https://usegalaxy.org/published/workflow?id=b33ad2032a655706, https://usegalaxy.org/published/workflow?id=b461ac6f18e0c9cf, https://usegalaxy.org/published/workflow?id=b4d57f2aa0678ad2, https://usegalaxy.org/published/workflow?id=b50f2446d5e60334, https://usegalaxy.org/published/workflow?id=b561d3d9645a2726, https://usegalaxy.org/published/workflow?id=b5e8f4a0ff226921, https://usegalaxy.org/published/workflow?id=b63d1e1024cc3295, https://usegalaxy.org/published/workflow?id=b68ec42db8953569, https://usegalaxy.org/published/workflow?id=b6c0208e49cd2271, https://usegalaxy.org/published/workflow?id=b6d90898e2db6aba, https://usegalaxy.org/published/workflow?id=b78a75ae89ae4c79, https://usegalaxy.org/published/workflow?id=b8804291f2754fc8, https://usegalaxy.org/published/workflow?id=b9d8a7ee3f5a3f67, https://usegalaxy.org/published/workflow?id=b9e6ddbc79904844, https://usegalaxy.org/published/workflow?id=ba405b449e27ba37, https://usegalaxy.org/published/workflow?id=ba5ea0a943d4359d, https://usegalaxy.org/published/workflow?id=ba68fd4b4348e63c, https://usegalaxy.org/published/workflow?id=baab0758f2240225, https://usegalaxy.org/published/workflow?id=bb16936081b820f6, https://usegalaxy.org/published/workflow?id=bb25ac3ba4863424, https://usegalaxy.org/published/workflow?id=bb9e69ae66c3d916, https://usegalaxy.org/published/workflow?id=bbe6f5a45ea5ee5e, https://usegalaxy.org/published/workflow?id=bbe958a8c0bf4955, https://usegalaxy.org/published/workflow?id=bcb798fb718968ce, https://usegalaxy.org/published/workflow?id=bd00c8a7a3b7e5be, https://usegalaxy.org/published/workflow?id=bd184804cfddafc4, https://usegalaxy.org/published/workflow?id=bd3bed78eb99e294, https://usegalaxy.org/published/workflow?id=be54e57345ce7ca5, https://usegalaxy.org/published/workflow?id=bf90f2bd20fbff21, https://usegalaxy.org/published/workflow?id=bfd3ba54576d2d81, https://usegalaxy.org/published/workflow?id=bfee1238c70627cb, https://usegalaxy.org/published/workflow?id=c0746df296544a3a, https://usegalaxy.org/published/workflow?id=c092a3631d68ce38, https://usegalaxy.org/published/workflow?id=c11dfc3314e33b33, https://usegalaxy.org/published/workflow?id=c1339c998a55431c, https://usegalaxy.org/published/workflow?id=c156e67ad1ae4a97, https://usegalaxy.org/published/workflow?id=c1ec12905944ca7b, https://usegalaxy.org/published/workflow?id=c20a68563e80d401, https://usegalaxy.org/published/workflow?id=c2898d28a3b380d6, https://usegalaxy.org/published/workflow?id=c337e5265a8079d0, https://usegalaxy.org/published/workflow?id=c4aaf11b0cb6e5ac, https://usegalaxy.org/published/workflow?id=c4af6c5f5dfaae82, https://usegalaxy.org/published/workflow?id=c57c820557ae9b55, https://usegalaxy.org/published/workflow?id=c64719e91e7346a2, https://usegalaxy.org/published/workflow?id=c712b85a55da2a2d, https://usegalaxy.org/published/workflow?id=c81833a367445f98, https://usegalaxy.org/published/workflow?id=c95fc8692a886a59, https://usegalaxy.org/published/workflow?id=c9e442a395fc1a58, https://usegalaxy.org/published/workflow?id=ca36eebd59575df3, https://usegalaxy.org/published/workflow?id=cb03300161109123, https://usegalaxy.org/published/workflow?id=cbbd7e95041d9429, https://usegalaxy.org/published/workflow?id=cd4d88429f096fbc, https://usegalaxy.org/published/workflow?id=cd5f803c80875b9c, https://usegalaxy.org/published/workflow?id=cd824d8631d6a55e, https://usegalaxy.org/published/workflow?id=cdea4f88ccbd155f, https://usegalaxy.org/published/workflow?id=ced446bf2428497b, https://usegalaxy.org/published/workflow?id=cf2dbc29ca20ebee, https://usegalaxy.org/published/workflow?id=cf3320614654adfe, https://usegalaxy.org/published/workflow?id=cfd37af9d6e4cbdb, https://usegalaxy.org/published/workflow?id=d00ac64dcd07f91a, https://usegalaxy.org/published/workflow?id=d0981820adf9c7d2, https://usegalaxy.org/published/workflow?id=d196c3bde666eccb, https://usegalaxy.org/published/workflow?id=d2759906e4124964, https://usegalaxy.org/published/workflow?id=d2edc47cc7963885, https://usegalaxy.org/published/workflow?id=d314df52f2f51502, https://usegalaxy.org/published/workflow?id=d3e656ab45f40c11, https://usegalaxy.org/published/workflow?id=d4029ce1344e874a, https://usegalaxy.org/published/workflow?id=d50b2df115706adb, https://usegalaxy.org/published/workflow?id=d69ea491b99016f4, https://usegalaxy.org/published/workflow?id=d7049965ca7d8ea9, https://usegalaxy.org/published/workflow?id=d768a4a06d3b1a90, https://usegalaxy.org/published/workflow?id=d7d65ee5c5ca951f, https://usegalaxy.org/published/workflow?id=d7e14ff032a6ac4f, https://usegalaxy.org/published/workflow?id=d817e98cef94bc96, https://usegalaxy.org/published/workflow?id=d85f8ef78040fbb1, https://usegalaxy.org/published/workflow?id=d903c7215a88c79f, https://usegalaxy.org/published/workflow?id=d9840d6ecf2b4d2f, https://usegalaxy.org/published/workflow?id=db01ac5b0dc50cd4, https://usegalaxy.org/published/workflow?id=db8443163482a2e0, https://usegalaxy.org/published/workflow?id=dbc650d226e89013, https://usegalaxy.org/published/workflow?id=dbcf0fbf5329b3fb, https://usegalaxy.org/published/workflow?id=dbdc894ad54675a8, https://usegalaxy.org/published/workflow?id=dcf658333596d76a, https://usegalaxy.org/published/workflow?id=ddf222b797082436, https://usegalaxy.org/published/workflow?id=de2861cdbd4e29ce, https://usegalaxy.org/published/workflow?id=de29cd965a2e93d3, https://usegalaxy.org/published/workflow?id=df1fa0b73f741a9c, https://usegalaxy.org/published/workflow?id=df24d76ebf13e3c1, https://usegalaxy.org/published/workflow?id=df6b9760e071b91b, https://usegalaxy.org/published/workflow?id=dfa8c64634aec75c, https://usegalaxy.org/published/workflow?id=dff3cf6921b3d4d6, https://usegalaxy.org/published/workflow?id=e0ec503626fa0d58, https://usegalaxy.org/published/workflow?id=e2c77aeabb8053b4, https://usegalaxy.org/published/workflow?id=e2d7b8a4e6c422a3, https://usegalaxy.org/published/workflow?id=e42a07b777c9f9dc, https://usegalaxy.org/published/workflow?id=e51aaf4d6b16b4d4, https://usegalaxy.org/published/workflow?id=e57d595b0cde1614, https://usegalaxy.org/published/workflow?id=e58a87508a337b91, https://usegalaxy.org/published/workflow?id=e5f79f576548f7c5, https://usegalaxy.org/published/workflow?id=e67b6da41e1e6932, https://usegalaxy.org/published/workflow?id=e67db5dc8eab60f3, https://usegalaxy.org/published/workflow?id=e6a6223ef5ef85a7, https://usegalaxy.org/published/workflow?id=e6b803c1232cd08e, https://usegalaxy.org/published/workflow?id=e6f57346a02be07f, https://usegalaxy.org/published/workflow?id=e7030b62a3335bd7, https://usegalaxy.org/published/workflow?id=e7586d70715207b5, https://usegalaxy.org/published/workflow?id=e899acc664c8b808, https://usegalaxy.org/published/workflow?id=e9927c058ec0661f, https://usegalaxy.org/published/workflow?id=e9ffad95baa43478, https://usegalaxy.org/published/workflow?id=ea105a8775a56837, https://usegalaxy.org/published/workflow?id=ea4c2defce2f5258, https://usegalaxy.org/published/workflow?id=eafe4aa62a600e1d, https://usegalaxy.org/published/workflow?id=eb33df15225b8aa0, https://usegalaxy.org/published/workflow?id=eb4f7dbca0114270, https://usegalaxy.org/published/workflow?id=ebbcdc389aad0eb8, https://usegalaxy.org/published/workflow?id=ebc9aad36017b567, https://usegalaxy.org/published/workflow?id=ec3d8d5d1531f92e, https://usegalaxy.org/published/workflow?id=ec96e3bf30d5f771, https://usegalaxy.org/published/workflow?id=edb299ecbf147618, https://usegalaxy.org/published/workflow?id=edf9be785ab9eb65, https://usegalaxy.org/published/workflow?id=ee27581327d147da, https://usegalaxy.org/published/workflow?id=ee3b8d7ba29da11c, https://usegalaxy.org/published/workflow?id=eed1aadf2fb83f6c, https://usegalaxy.org/published/workflow?id=ef44d02a79bd28bf, https://usegalaxy.org/published/workflow?id=f062eda543541ba8, https://usegalaxy.org/published/workflow?id=f0ee8bcd7c8fadca, https://usegalaxy.org/published/workflow?id=f0feca8af9aeddba, https://usegalaxy.org/published/workflow?id=f23e5f333987a89f, https://usegalaxy.org/published/workflow?id=f29d1bcfeaacba04, https://usegalaxy.org/published/workflow?id=f302d673420a9bdd, https://usegalaxy.org/published/workflow?id=f39603063febba82, https://usegalaxy.org/published/workflow?id=f3b417763495221b, https://usegalaxy.org/published/workflow?id=f3ed710e251833a7, https://usegalaxy.org/published/workflow?id=f4ed1c9434ed0445, https://usegalaxy.org/published/workflow?id=f5bd2da36ab0a870, https://usegalaxy.org/published/workflow?id=f60818a405f1bbbd, https://usegalaxy.org/published/workflow?id=f63f7a0a33a83841, https://usegalaxy.org/published/workflow?id=f765c8aa4bc3176c, https://usegalaxy.org/published/workflow?id=f88f186bc851e954, https://usegalaxy.org/published/workflow?id=f9d546aae406cf15, https://usegalaxy.org/published/workflow?id=fa226c044fa026ef, https://usegalaxy.org/published/workflow?id=fa36d9b50e956917, https://usegalaxy.org/published/workflow?id=fae519dcba6bfc72, https://usegalaxy.org/published/workflow?id=fc130cb411aa7d06, https://usegalaxy.org/published/workflow?id=fcbe12fc4eaae12e, https://usegalaxy.org/published/workflow?id=fce1837144d3a86e, https://usegalaxy.org/published/workflow?id=fe4c2791508c56ab, https://usegalaxy.org/published/workflow?id=feeec17310351914, https://usegalaxy.org/published/workflow?id=ff137b61d4ef1b86, https://usegalaxy.org/published/workflow?id=ffae9c47980a5170, https://workflowhub.eu/workflows/100?version=1, https://workflowhub.eu/workflows/102?version=1, https://workflowhub.eu/workflows/112?version=6, https://workflowhub.eu/workflows/113?version=4, https://workflowhub.eu/workflows/1190?version=1, https://workflowhub.eu/workflows/1540?version=1, https://workflowhub.eu/workflows/1562?version=1, https://workflowhub.eu/workflows/1568?version=1, https://workflowhub.eu/workflows/1642?version=1, https://workflowhub.eu/workflows/1659?version=1, https://workflowhub.eu/workflows/1692?version=1, https://workflowhub.eu/workflows/1695?version=1, https://workflowhub.eu/workflows/1715?version=1, https://workflowhub.eu/workflows/220?version=2, https://workflowhub.eu/workflows/232?version=1, https://workflowhub.eu/workflows/233?version=1, https://workflowhub.eu/workflows/353?version=1, https://workflowhub.eu/workflows/357?version=1, https://workflowhub.eu/workflows/35?version=1, https://workflowhub.eu/workflows/38?version=1, https://workflowhub.eu/workflows/395?version=15, https://workflowhub.eu/workflows/399?version=19 |
epigenetics/atac-seq, epigenetics/cut_and_run, genome-annotation/funannotate, introduction/galaxy-intro-ngs-data-managment, transcriptomics/ref-based, transcriptomics/rna-seq-reads-to-counts, variant-analysis/non-dip, variant-analysis/sars-cov-2 |
|
pick_value |
pick_value |
Compose a text parameter value using text, integer and float values |
2023-01-23 |
|
0.2.0 |
|
|
To update |
Text Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pick_value |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pick_value |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
69 |
69 |
3462 |
3462 |
100 |
100 |
6099 |
6099 |
5 |
5 |
399 |
399 |
0 |
0 |
0 |
0 |
9960 |
9960 |
174 |
174 |
https://usegalaxy.eu/published/workflow?id=01fe4c590e608103, https://usegalaxy.eu/published/workflow?id=023a0ee62dd1f593, https://usegalaxy.eu/published/workflow?id=089e5e83b1de0511, https://usegalaxy.eu/published/workflow?id=0c92c3c322c3effe, https://usegalaxy.eu/published/workflow?id=0ccb3838765a8b84, https://usegalaxy.eu/published/workflow?id=0cf3c2114ab65858, https://usegalaxy.eu/published/workflow?id=10bde4e7f8dbd0c4, https://usegalaxy.eu/published/workflow?id=1151052f4393852a, https://usegalaxy.eu/published/workflow?id=1483534f49b826bf, https://usegalaxy.eu/published/workflow?id=194a05d42687b524, https://usegalaxy.eu/published/workflow?id=1ac0a15758277730, https://usegalaxy.eu/published/workflow?id=1bb084f1bc102734, https://usegalaxy.eu/published/workflow?id=1da7ac8eaf891f39, https://usegalaxy.eu/published/workflow?id=21a3f72851f29925, https://usegalaxy.eu/published/workflow?id=2671a5f85b2cccfe, https://usegalaxy.eu/published/workflow?id=2880a32a52d27743, https://usegalaxy.eu/published/workflow?id=2b00b6498a2b4779, https://usegalaxy.eu/published/workflow?id=2e93613c688ea52e, https://usegalaxy.eu/published/workflow?id=342a5df69951e3d7, https://usegalaxy.eu/published/workflow?id=379642036b6f5a66, https://usegalaxy.eu/published/workflow?id=38f12705279b5dfa, https://usegalaxy.eu/published/workflow?id=3a3e2d50fe7a9ee3, https://usegalaxy.eu/published/workflow?id=3b94f511c52da835, https://usegalaxy.eu/published/workflow?id=3cf3dd9727b7ac92, https://usegalaxy.eu/published/workflow?id=3e255a5b7026d26e, https://usegalaxy.eu/published/workflow?id=3eb6663a66f8e69a, https://usegalaxy.eu/published/workflow?id=3f5414bb38b47fcf, https://usegalaxy.eu/published/workflow?id=3f6c7249ef71ae41, https://usegalaxy.eu/published/workflow?id=416141b245073406, https://usegalaxy.eu/published/workflow?id=41c48e4632684f76, https://usegalaxy.eu/published/workflow?id=475ea16f943cc013, https://usegalaxy.eu/published/workflow?id=4856e3522b2ee059, https://usegalaxy.eu/published/workflow?id=497b82d3b92dc076, https://usegalaxy.eu/published/workflow?id=4c3a9b574f37eebb, https://usegalaxy.eu/published/workflow?id=4cb8f782994763a4, https://usegalaxy.eu/published/workflow?id=4d41ee83fc0040d4, https://usegalaxy.eu/published/workflow?id=5009d8d7a907a825, https://usegalaxy.eu/published/workflow?id=5115299e77df8104, https://usegalaxy.eu/published/workflow?id=54590ccd11ffbf65, https://usegalaxy.eu/published/workflow?id=57cc33ed64d71982, https://usegalaxy.eu/published/workflow?id=5aaa64ecdf9f7d6e, https://usegalaxy.eu/published/workflow?id=5ad406442ec21345, https://usegalaxy.eu/published/workflow?id=5e1906290f5b4d8a, https://usegalaxy.eu/published/workflow?id=5f29105e842716db, https://usegalaxy.eu/published/workflow?id=6573f3b1606b7f09, https://usegalaxy.eu/published/workflow?id=69cdd404592535ec, https://usegalaxy.eu/published/workflow?id=6ed089fe65347272, https://usegalaxy.eu/published/workflow?id=71a6d128a09210f0, https://usegalaxy.eu/published/workflow?id=7337d15d121596da, https://usegalaxy.eu/published/workflow?id=79b5afb125e3c3da, https://usegalaxy.eu/published/workflow?id=7ecd92cb382d8168, https://usegalaxy.eu/published/workflow?id=81f1927bfe3ffea1, https://usegalaxy.eu/published/workflow?id=847403b72dd346ff, https://usegalaxy.eu/published/workflow?id=865715636d40b798, https://usegalaxy.eu/published/workflow?id=8be366ad6a42408b, https://usegalaxy.eu/published/workflow?id=92760fc19ef120ce, https://usegalaxy.eu/published/workflow?id=92dafb3d1c06e074, https://usegalaxy.eu/published/workflow?id=95c4d5549e820d88, https://usegalaxy.eu/published/workflow?id=95f420d8856bf725, https://usegalaxy.eu/published/workflow?id=9c0b67496dfe52b2, https://usegalaxy.eu/published/workflow?id=a15dabcadb63b46d, https://usegalaxy.eu/published/workflow?id=a18615f77ed3f371, https://usegalaxy.eu/published/workflow?id=a72e3cb6eb656102, https://usegalaxy.eu/published/workflow?id=a9469155eee12ff1, https://usegalaxy.eu/published/workflow?id=aa6dc57f5c67fb4b, https://usegalaxy.eu/published/workflow?id=aada0111f835ce49, https://usegalaxy.eu/published/workflow?id=ac6eb99f70d35999, https://usegalaxy.eu/published/workflow?id=ae74f60cd20d56bc, https://usegalaxy.eu/published/workflow?id=af30010868c97316, https://usegalaxy.eu/published/workflow?id=b4948afacccfefdb, https://usegalaxy.eu/published/workflow?id=b8baade87e733fce, https://usegalaxy.eu/published/workflow?id=bc87309a8763d0b4, https://usegalaxy.eu/published/workflow?id=bcf99cc0469db276, https://usegalaxy.eu/published/workflow?id=bef0a7d604f2ebef, https://usegalaxy.eu/published/workflow?id=c4327bccfa623f7e, https://usegalaxy.eu/published/workflow?id=c4c2e669b86cffbc, https://usegalaxy.eu/published/workflow?id=c508c00e81018dd8, https://usegalaxy.eu/published/workflow?id=dc27453c438577f6, https://usegalaxy.eu/published/workflow?id=de9cf573314f416c, https://usegalaxy.eu/published/workflow?id=df08e520ec3dbcb7, https://usegalaxy.eu/published/workflow?id=e472096116cbe392, https://usegalaxy.eu/published/workflow?id=e7aebe58411d97ed, https://usegalaxy.eu/published/workflow?id=e8f9e1d911683b22, https://usegalaxy.eu/published/workflow?id=e935d2c8ffb52588, https://usegalaxy.eu/published/workflow?id=ec79f14ab91cd933, https://usegalaxy.eu/published/workflow?id=efb58bba65393347, https://usegalaxy.eu/published/workflow?id=f1ca4289ee4f67bb, https://usegalaxy.eu/published/workflow?id=f578a097b4339025, https://usegalaxy.eu/published/workflow?id=f58526da1fd68108, https://usegalaxy.eu/published/workflow?id=faf99fbb0fa792b9, https://usegalaxy.eu/published/workflow?id=fb015e398373ea8a, https://usegalaxy.eu/published/workflow?id=fc25c1f8c6667c87, https://usegalaxy.eu/published/workflow?id=fd649ac4d4872c81, https://usegalaxy.org.au/published/workflow?id=02eebe3d909206ab, https://usegalaxy.org.au/published/workflow?id=04ab43fb3e7840ef, https://usegalaxy.org.au/published/workflow?id=0af0ea50f1237952, https://usegalaxy.org.au/published/workflow?id=0f01e24e6c33a834, https://usegalaxy.org.au/published/workflow?id=102eb726f63f3190, https://usegalaxy.org.au/published/workflow?id=10355b2680374a03, https://usegalaxy.org.au/published/workflow?id=109f0c68e617e104, https://usegalaxy.org.au/published/workflow?id=1eb3e1452c672480, https://usegalaxy.org.au/published/workflow?id=2470cb61ba51288c, https://usegalaxy.org.au/published/workflow?id=28705b86e0595ded, https://usegalaxy.org.au/published/workflow?id=2d45d7138d8715b4, https://usegalaxy.org.au/published/workflow?id=319e9d693fac8dce, https://usegalaxy.org.au/published/workflow?id=3604307ec2835628, https://usegalaxy.org.au/published/workflow?id=36f54eda8568355d, https://usegalaxy.org.au/published/workflow?id=371c9892d261cee2, https://usegalaxy.org.au/published/workflow?id=3df7f45b7b388f8c, https://usegalaxy.org.au/published/workflow?id=40666ceb68d101ac, https://usegalaxy.org.au/published/workflow?id=41795303a88d9e94, https://usegalaxy.org.au/published/workflow?id=4267bd1e4cfd1901, https://usegalaxy.org.au/published/workflow?id=51bad198f1fd1215, https://usegalaxy.org.au/published/workflow?id=5550585ffc3d8d0e, https://usegalaxy.org.au/published/workflow?id=5b0c0e34394afed1, https://usegalaxy.org.au/published/workflow?id=5f4f874e49515555, https://usegalaxy.org.au/published/workflow?id=60c0dec52cdca708, https://usegalaxy.org.au/published/workflow?id=63789b6f82172679, https://usegalaxy.org.au/published/workflow?id=68b2961117e62890, https://usegalaxy.org.au/published/workflow?id=6c1c11a81a2ab1b8, https://usegalaxy.org.au/published/workflow?id=6c27019d03dd49d8, https://usegalaxy.org.au/published/workflow?id=6c9129acb9d98afe, https://usegalaxy.org.au/published/workflow?id=8926e592f2e60863, https://usegalaxy.org.au/published/workflow?id=8a6233015db6dd24, https://usegalaxy.org.au/published/workflow?id=8bf8c9929249f37d, https://usegalaxy.org.au/published/workflow?id=8dd86497bc15d981, https://usegalaxy.org.au/published/workflow?id=8e8a5cce9f3f2f67, https://usegalaxy.org.au/published/workflow?id=8eab5e2b2c683076, https://usegalaxy.org.au/published/workflow?id=91ee716be8bfd508, https://usegalaxy.org.au/published/workflow?id=9642aadb83c4f752, https://usegalaxy.org.au/published/workflow?id=970dc0d8bd74707f, https://usegalaxy.org.au/published/workflow?id=9804030358c3f844, https://usegalaxy.org.au/published/workflow?id=98f660971010d11d, https://usegalaxy.org.au/published/workflow?id=9e0bae0505ee7c07, https://usegalaxy.org.au/published/workflow?id=a345bf84eb9bf6b2, https://usegalaxy.org.au/published/workflow?id=a525966251895f8a, https://usegalaxy.org.au/published/workflow?id=a9e59d38c6c710bc, https://usegalaxy.org.au/published/workflow?id=aa387984ac9e2f71, https://usegalaxy.org.au/published/workflow?id=ad10cd704268dcf0, https://usegalaxy.org.au/published/workflow?id=b09530351a9e9ffb, https://usegalaxy.org.au/published/workflow?id=b19fa49405117317, https://usegalaxy.org.au/published/workflow?id=b5131e3a0ef2676e, https://usegalaxy.org.au/published/workflow?id=b88036506d0be117, https://usegalaxy.org.au/published/workflow?id=b9faf6a3f48fc11b, https://usegalaxy.org.au/published/workflow?id=bc4e3115586cbe62, https://usegalaxy.org.au/published/workflow?id=bcdbefda8e15e547, https://usegalaxy.org.au/published/workflow?id=be96bb47b6d6435a, https://usegalaxy.org.au/published/workflow?id=c622bd03677314aa, https://usegalaxy.org.au/published/workflow?id=c6a71573a299eb3a, https://usegalaxy.org.au/published/workflow?id=c7e1f666a3366823, https://usegalaxy.org.au/published/workflow?id=c7f2d6490128dc3c, https://usegalaxy.org.au/published/workflow?id=d094d2aa9c6e9c24, https://usegalaxy.org.au/published/workflow?id=d298edda13b382e7, https://usegalaxy.org.au/published/workflow?id=d7f3fc810261e419, https://usegalaxy.org.au/published/workflow?id=df4e186069552649, https://usegalaxy.org.au/published/workflow?id=e28ca83f14f4ede5, https://usegalaxy.org.au/published/workflow?id=ea687c5613fcce27, https://usegalaxy.org.au/published/workflow?id=fa37223950a91f34, https://usegalaxy.org.au/published/workflow?id=fe1e7fa0bc437ed8, https://usegalaxy.org/published/workflow?id=07e873a6d75dfe9f, https://usegalaxy.org/published/workflow?id=0993daadf2db5f51, https://usegalaxy.org/published/workflow?id=1245e9435cbc3985, https://usegalaxy.org/published/workflow?id=137d0f05a71d7acb, https://usegalaxy.org/published/workflow?id=1d19cf599e1d4a0f, https://usegalaxy.org/published/workflow?id=1d24cc949c52e475, https://usegalaxy.org/published/workflow?id=1eec2586d1ff908b, https://usegalaxy.org/published/workflow?id=25a9f0693ff6d327, https://usegalaxy.org/published/workflow?id=25cdc47baba556c5, https://usegalaxy.org/published/workflow?id=283bc048cc7a80f5, https://usegalaxy.org/published/workflow?id=284150bb1f296378, https://usegalaxy.org/published/workflow?id=2b41752b8518a87b, https://usegalaxy.org/published/workflow?id=2c5c627c08563398, https://usegalaxy.org/published/workflow?id=2d994cc02ec05ede, https://usegalaxy.org/published/workflow?id=305fb9f84b053713, https://usegalaxy.org/published/workflow?id=31a6145b0832fa48, https://usegalaxy.org/published/workflow?id=386d3b300cf05305, https://usegalaxy.org/published/workflow?id=3ba73f679558017c, https://usegalaxy.org/published/workflow?id=3f7550d5d2bf0b96, https://usegalaxy.org/published/workflow?id=408c799822cbf6ea, https://usegalaxy.org/published/workflow?id=40a65b5bc1dcc0b4, https://usegalaxy.org/published/workflow?id=41c40e7aa6b24f51, https://usegalaxy.org/published/workflow?id=435f0340bf00c940, https://usegalaxy.org/published/workflow?id=44781c8b0bd667ed, https://usegalaxy.org/published/workflow?id=484f8fcf21d67376, https://usegalaxy.org/published/workflow?id=498a8c6329ca5728, https://usegalaxy.org/published/workflow?id=4bf73376661baafd, https://usegalaxy.org/published/workflow?id=4c840284d2984fa0, https://usegalaxy.org/published/workflow?id=505c826e8c99d7bf, https://usegalaxy.org/published/workflow?id=5503f7835226bc04, https://usegalaxy.org/published/workflow?id=57e6345fda3e2682, https://usegalaxy.org/published/workflow?id=586b923221fb5da4, https://usegalaxy.org/published/workflow?id=597c4d54f8a8ebe7, https://usegalaxy.org/published/workflow?id=5dfec2a3ae5fa765, https://usegalaxy.org/published/workflow?id=653d553ac2fa51c8, https://usegalaxy.org/published/workflow?id=667493d318b86b7d, https://usegalaxy.org/published/workflow?id=68832752b883c226, https://usegalaxy.org/published/workflow?id=6988c29ae84d2788, https://usegalaxy.org/published/workflow?id=6b511b47176893e3, https://usegalaxy.org/published/workflow?id=7072731b51e16923, https://usegalaxy.org/published/workflow?id=73a8b48cbd6f1d8c, https://usegalaxy.org/published/workflow?id=7dba74c915f63dc1, https://usegalaxy.org/published/workflow?id=81f1f0fd6d9235fd, https://usegalaxy.org/published/workflow?id=83898f7cbfb7f88e, https://usegalaxy.org/published/workflow?id=864da6858d34df08, https://usegalaxy.org/published/workflow?id=8cfbaa14cff5a633, https://usegalaxy.org/published/workflow?id=8d605fbd33003d26, https://usegalaxy.org/published/workflow?id=90ac9dc2bd9d8092, https://usegalaxy.org/published/workflow?id=90f5b512997c70f8, https://usegalaxy.org/published/workflow?id=932b3bc10186f73e, https://usegalaxy.org/published/workflow?id=936ed7447c8e0a2d, https://usegalaxy.org/published/workflow?id=93c1fef4472aa7a8, https://usegalaxy.org/published/workflow?id=961dac8100c6c70c, https://usegalaxy.org/published/workflow?id=97263f3308077ff0, https://usegalaxy.org/published/workflow?id=9938a81fb6911412, https://usegalaxy.org/published/workflow?id=9ddfdc9d6cacea88, https://usegalaxy.org/published/workflow?id=9f1aabc6f5d18d13, https://usegalaxy.org/published/workflow?id=a737766dd083b280, https://usegalaxy.org/published/workflow?id=a8e0f77cd6ef49f9, https://usegalaxy.org/published/workflow?id=ab0be4897d5355ac, https://usegalaxy.org/published/workflow?id=acada5044d64a30a, https://usegalaxy.org/published/workflow?id=af1f4dba9aaa0b52, https://usegalaxy.org/published/workflow?id=b6d535f210efa18e, https://usegalaxy.org/published/workflow?id=bb1cb6abfe84a646, https://usegalaxy.org/published/workflow?id=bbc894a79eb0e769, https://usegalaxy.org/published/workflow?id=bd6bfd338ffb9637, https://usegalaxy.org/published/workflow?id=bfd2e7e63d3e6856, https://usegalaxy.org/published/workflow?id=bfef75672b9c3ea4, https://usegalaxy.org/published/workflow?id=c0a9a2d53b8660de, https://usegalaxy.org/published/workflow?id=c983ea8a32662cd6, https://usegalaxy.org/published/workflow?id=d08135fa13d1745e, https://usegalaxy.org/published/workflow?id=daaded719dcfd53b, https://usegalaxy.org/published/workflow?id=f09033420c6267ab, https://usegalaxy.org/published/workflow?id=f1a54b10d4afce8f, https://usegalaxy.org/published/workflow?id=f2f633d2b02b6050, https://usegalaxy.org/published/workflow?id=f35ccb693cd874c1, https://usegalaxy.org/published/workflow?id=fa26fd51caea53c7, https://usegalaxy.org/published/workflow?id=fd40e50c9f1545ce, https://workflowhub.eu/workflows/1096?version=2, https://workflowhub.eu/workflows/1103?version=3, https://workflowhub.eu/workflows/1104?version=2, https://workflowhub.eu/workflows/1164?version=2, https://workflowhub.eu/workflows/1201?version=4, https://workflowhub.eu/workflows/1256?version=1, https://workflowhub.eu/workflows/1260?version=2, https://workflowhub.eu/workflows/1327?version=6, https://workflowhub.eu/workflows/1352?version=3, https://workflowhub.eu/workflows/612?version=23, https://workflowhub.eu/workflows/628?version=1, https://workflowhub.eu/workflows/631?version=6, https://workflowhub.eu/workflows/632?version=10, https://workflowhub.eu/workflows/642?version=23, https://workflowhub.eu/workflows/694?version=7 |
|
|
picrust |
picrust_categorize, picrust_compare_biom, picrust_format_tree_and_trait_table, picrust_metagenome_contributions, picrust_normalize_by_copy_number, picrust_predict_metagenomes |
PICRUSt wrappers |
2016-11-08 |
https://picrust.github.io/picrust/ |
1.1.1 |
picrust |
1.1.4 |
To update |
Metagenomics |
Phylogenetic reconstruction, Expression analysis, Genome annotation, DNA barcoding |
Phylogenetic reconstruction, Expression analysis, Genome annotation, DNA barcoding |
Metagenomics, Microbial ecology, Functional, regulatory and non-coding RNA, Metagenomic sequencing |
Metagenomics, Microbial ecology, Functional, regulatory and non-coding RNA, Metagenomic sequencing |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/picrust |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/picrust |
picrust |
PICRUSt |
PICRUSt (Phylogenetic Investigation of Communities by Reconstruction of Unobserved States) is a bioinformatics software package designed to predict metagenome functional content from marker gene (e.g., 16S rRNA) surveys and full genomes. |
|
0 |
6 |
5 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
0 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
5 |
0 |
48 |
61 |
759 |
1136 |
0 |
0 |
0 |
0 |
35 |
35 |
2322 |
2322 |
16 |
16 |
429 |
429 |
3887 |
3510 |
112 |
99 |
|
|
|
picrust2 |
picrust2_add_descriptions, picrust2_hsp, picrust2_metagenome_pipeline, picrust2_pathway_pipeline, picrust2_pipeline, picrust2_place_seqs, picrust2_shuffle_predictions |
PICRUSt2: Phylogenetic Investigation of Communities by Reconstruction of Unobserved States |
2021-07-09 |
https://github.com/picrust/picrust2/wiki |
2.5.3 |
picrust2 |
2.6.2 |
To update |
Metagenomics |
Phylogenetic reconstruction, Expression analysis, Rarefaction, Pathway analysis |
Phylogenetic reconstruction, Expression analysis, Rarefaction, Pathway analysis |
Metagenomics, Microbiology, Phylogenetics, Metagenomic sequencing |
Metagenomics, Microbiology, Phylogenetics, Metagenomic sequencing |
iuc |
https://github.com/picrust/picrust2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/picrust2 |
picrust2 |
PICRUSt2 |
PICRUSt2 (Phylogenetic Investigation of Communities by Reconstruction of Unobserved States) is a software for predicting functional abundances based only on marker gene sequences. |
|
0 |
7 |
7 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 |
0 |
0 |
186 |
186 |
3685 |
3685 |
1 |
1 |
1 |
1 |
39 |
39 |
1742 |
1742 |
0 |
0 |
0 |
0 |
5428 |
5428 |
226 |
226 |
https://usegalaxy.eu/published/workflow?id=be9ff4159593cc34 |
|
|
pilon |
pilon |
pilon is a tool for assembly improvement and variant analysis in bacteria |
2016-08-11 |
https://github.com/broadinstitute/pilon/wiki |
1.20.1 |
pilon |
1.24 |
To update |
Variant Analysis |
Sequence assembly, Analysis, Read alignment |
Sequence assembly, Analysis |
Assembly |
Assembly |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/pilon |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pilon |
pilon |
pilon |
Read alignment analysis to diagnose, report, and automatically improve de novo genome assemblies. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1213 |
1250 |
9551 |
10243 |
1192 |
1194 |
8459 |
8465 |
802 |
825 |
4174 |
4533 |
21 |
21 |
111 |
111 |
23352 |
22295 |
3290 |
3228 |
https://dev.workflowhub.eu/workflows/1005?version=1, https://dev.workflowhub.eu/workflows/1139?version=1, https://usegalaxy.eu/published/workflow?id=007ce6405d196df3, https://usegalaxy.eu/published/workflow?id=3588c40cab9b4e1d, https://usegalaxy.org.au/published/workflow?id=02c74095a7128c9d, https://usegalaxy.org.au/published/workflow?id=22bd45f60c60a338, https://usegalaxy.org.au/published/workflow?id=2cb16d321a804b1a, https://usegalaxy.org.au/published/workflow?id=7c343e5b55474d19, https://usegalaxy.org.au/published/workflow?id=8a40059343cf4b87, https://usegalaxy.org.au/published/workflow?id=b5403e4fff2961f9, https://usegalaxy.org/published/workflow?id=bff206b4625375bc, https://workflowhub.eu/workflows/1617?version=1 |
assembly/chloroplast-assembly |
|
pimento |
pimento_are_there_primers, pimento_auto, pimento_choose_primer_cutoff, pimento_find_cutoffs, pimento_gen_bcv, pimento_std |
A PrIMEr infereNce TOolkit to facilitate large-scale calling of metabarcoding amplicon sequence variants. |
2025-08-04 |
https://github.com/EBI-Metagenomics/PIMENTO |
1.0.2 |
mi-pimento |
1.0.2 |
Up-to-date |
Metagenomics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pimento |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pimento |
|
|
|
|
0 |
0 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
pipelign |
pipelign |
Multipe sequence alignment |
2019-08-20 |
https://github.com/asmmhossain/pipelign/ |
0.2 |
pipelign |
0.2 |
Up-to-date |
Next Gen Mappers |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/pipelign |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pipelign |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
268 |
271 |
1495 |
1514 |
694 |
699 |
9377 |
9404 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
10918 |
10872 |
970 |
962 |
|
|
|
pizzly |
pizzly |
Pizzly is a program for detecting gene fusions from RNA-Seq data of cancer samples. |
2017-09-03 |
https://github.com/pmelsted/pizzly/ |
0.37.3.1 |
pizzly |
0.37.3 |
To update |
Transcriptomics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pizzly |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
22 |
25 |
200 |
219 |
84 |
84 |
1729 |
1729 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1948 |
1929 |
109 |
106 |
|
|
|
plasclass |
plasclass |
PlasClass is a tool to classify sequences of plasmid or chromosomal origin |
2025-07-31 |
https://github.com/Shamir-Lab/PlasClass |
0.1.1 |
plasclass |
0.1.1 |
Up-to-date |
Sequence Analysis |
Sequence classification, Sequence assembly, k-mer counting |
Sequence classification, Sequence assembly, k-mer counting |
Metagenomics, Sequence assembly, DNA, Metagenomic sequencing |
Metagenomics, Sequence assembly, DNA, Metagenomic sequencing |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasclass |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasclass |
PlasClass |
PlasClass |
PlasClass is a tool for easy classification of sequences as either plasmid or chromosomal. For example, it can be used to classify the contigs in a (metagenomic) assembly. |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
plasflow |
PlasFlow |
PlasFlow - Prediction of plasmid sequences in metagenomic contigs. |
2018-09-05 |
https://github.com/smaegol/PlasFlow |
1.1.0 |
plasflow |
1.1.0 |
Up-to-date |
Sequence Analysis |
Sequence analysis |
Sequence analysis |
Metagenomics, Sequence assembly, Mobile genetic elements, Machine learning |
Metagenomics, Sequence assembly, Mobile genetic elements, Machine learning |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/plasflow |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasflow |
plasflow |
PlasFlow |
PlasFlow is a set of scripts used for prediction of plasmid sequences in metagenomic contigs. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
805 |
857 |
51000 |
51597 |
702 |
704 |
7425 |
7427 |
68 |
68 |
3148 |
3148 |
0 |
0 |
0 |
0 |
62172 |
61573 |
1629 |
1575 |
https://dev.workflowhub.eu/workflows/1107?version=1, https://usegalaxy.eu/published/workflow?id=152223c8aed27357, https://usegalaxy.eu/published/workflow?id=249c115413f17f28, https://usegalaxy.eu/published/workflow?id=3081569659a45b9e, https://usegalaxy.eu/published/workflow?id=32d2f5340098bcbd, https://usegalaxy.eu/published/workflow?id=39837ca09374598b, https://usegalaxy.eu/published/workflow?id=44e53ea319e07daa, https://usegalaxy.eu/published/workflow?id=9219557de92e0203, https://usegalaxy.eu/published/workflow?id=b4de76c0a4d0e23a, https://usegalaxy.eu/published/workflow?id=c48807045e258dd8, https://usegalaxy.eu/published/workflow?id=dc7107896a3f2964, https://usegalaxy.org.au/published/workflow?id=d9571b3dfef34e5e, https://usegalaxy.org/published/workflow?id=33d90e718ce500ef, https://workflowhub.eu/workflows/1477?version=1, https://workflowhub.eu/workflows/406?version=1 |
microbiome/plasmid-metagenomics-nanopore |
|
plasmidfinder |
plasmidfinder |
"PlasmidFinder provides the detection of replicons in the WGSand assigns the plasmids under study to lineages that trace backthe information to the existing knowledge on Inc groups and suggestspossible reference plasmids for each lineage" |
2022-09-19 |
https://bitbucket.org/genomicepidemiology/plasmidfinder/src/master/ |
2.1.6 |
plasmidfinder |
2.1.6 |
Up-to-date |
Sequence Analysis |
Genome assembly, Scaffolding, Multilocus sequence typing |
Genome assembly, Scaffolding, Multilocus sequence typing |
Whole genome sequencing, Sequence assembly, Mapping, Probes and primers |
Whole genome sequencing, Sequence assembly, Mapping, Probes and primers |
iuc |
https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder |
PlasmidFinder |
PlasmidFinder |
PlasmidFinder is a tool for the identification and typing of Plasmid Replicons in Whole-Genome Sequencing (WGS). |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
622 |
622 |
21867 |
21867 |
263 |
263 |
2923 |
2923 |
99 |
99 |
1462 |
1462 |
34 |
34 |
6370 |
6370 |
32622 |
32622 |
1018 |
1018 |
https://dev.workflowhub.eu/workflows/1136?version=2, https://usegalaxy.eu/published/workflow?id=2c1a6da84d891cf2, https://usegalaxy.eu/published/workflow?id=36ea584e0f60893e, https://usegalaxy.eu/published/workflow?id=3f5fe28793ed0c6c, https://usegalaxy.eu/published/workflow?id=4a218fb93d78ba67, https://usegalaxy.eu/published/workflow?id=61948fcaefa1418a, https://usegalaxy.eu/published/workflow?id=6b69ab27c565257b, https://usegalaxy.eu/published/workflow?id=8792eaecb69fbc26, https://usegalaxy.eu/published/workflow?id=a18aed4b03ffd27e, https://usegalaxy.eu/published/workflow?id=b1afc8d1e81fc904, https://usegalaxy.eu/published/workflow?id=bcd50e655809cfcb, https://usegalaxy.eu/published/workflow?id=d8db0b2e30370b84, https://usegalaxy.eu/published/workflow?id=dfb8e0f3c534000e, https://usegalaxy.fr/published/workflow?id=7964ddc68853458f, https://usegalaxy.org/published/workflow?id=04c5ea133de3204c, https://usegalaxy.org/published/workflow?id=3940186d02245b1d, https://usegalaxy.org/published/workflow?id=4f8bdd61c524b901, https://usegalaxy.org/published/workflow?id=649cdc14757e5755, https://usegalaxy.org/published/workflow?id=8cb8a588a0495cfa, https://usegalaxy.org/published/workflow?id=993534c11310a207, https://usegalaxy.org/published/workflow?id=d2a5f6a5181aada5, https://workflowhub.eu/workflows/1050?version=11, https://workflowhub.eu/workflows/1513?version=1 |
genome-annotation/bacterial-genome-annotation |
|
plink |
plink |
Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. |
2020-09-14 |
https://www.cog-genomics.org/plink |
1.90b6.21 |
plink |
1.90b6.21 |
Up-to-date |
Genome-Wide Association Study |
Genetic variation analysis |
Genetic variation analysis |
GWAS study |
GWAS study |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/plink |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/plink |
plink |
PLINK |
Free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. |
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
142 |
142 |
934 |
934 |
61 |
61 |
867 |
867 |
0 |
0 |
0 |
0 |
6 |
6 |
64 |
64 |
1865 |
1865 |
209 |
209 |
|
|
|
polypolish |
polypolish |
"Polypolish is a tool for polishing genome assemblies with short reads.Polypolish uses SAM files where each read has been aligned to all possible locations (not just a single best location).This allows it to repair errors in repeat regions that other alignment-based polishers cannot fix." |
2022-09-22 |
https://github.com/rrwick/Polypolish |
0.6.0 |
polypolish |
0.6.0 |
Up-to-date |
Sequence Analysis |
Genome assembly, Read mapping, Mapping assembly, Sequencing error detection |
Genome assembly, Read mapping, Mapping assembly, Sequencing error detection |
Sequence assembly, Sequence composition, complexity and repeats, Mapping |
Sequence assembly, Sequence composition, complexity and repeats, Mapping |
iuc |
https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/polypolish |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/polypolish |
Polypolish |
Polypolish |
Polypolish is a tool for polishing genome assemblies with short reads. Unlike other tools in this category, Polypolish uses SAM files where each read has been aligned to all possible locations (not just a single best location). This allows it to repair errors in repeat regions that other alignment-based polishers cannot fix. |
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
112 |
112 |
890 |
890 |
0 |
0 |
0 |
0 |
9 |
9 |
276 |
276 |
8 |
8 |
76 |
76 |
1242 |
1242 |
129 |
129 |
https://dev.workflowhub.eu/workflows/1178?version=1, https://workflowhub.eu/workflows/1613?version=1 |
assembly/mrsa-nanopore |
|
porechop |
porechop |
Porechop - Finding and removing adapters from Oxford Nanopore reads |
2018-09-13 |
https://github.com/rrwick/Porechop |
|
porechop |
0.2.4 |
To update |
Fasta Manipulation, Fastq Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/porechop |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/porechop |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
2984 |
3110 |
321684 |
323742 |
2411 |
2414 |
100549 |
100553 |
1194 |
1199 |
58191 |
58998 |
0 |
0 |
0 |
0 |
483293 |
480424 |
6723 |
6589 |
https://dev.workflowhub.eu/workflows/1064?version=1, https://dev.workflowhub.eu/workflows/1087?version=2, https://dev.workflowhub.eu/workflows/1097?version=1, https://usegalaxy.eu/published/workflow?id=0590554db9794d13, https://usegalaxy.eu/published/workflow?id=08eb5e55109c4d9c, https://usegalaxy.eu/published/workflow?id=181e751be8dd9abc, https://usegalaxy.eu/published/workflow?id=2e0075791f7fa384, https://usegalaxy.eu/published/workflow?id=30dc526dcfa500df, https://usegalaxy.eu/published/workflow?id=344cd3a3c2ce5302, https://usegalaxy.eu/published/workflow?id=346b46e6316c6950, https://usegalaxy.eu/published/workflow?id=4a39d38fde81e35d, https://usegalaxy.eu/published/workflow?id=57d3109f32defa3b, https://usegalaxy.eu/published/workflow?id=70d3ebf31940bfb3, https://usegalaxy.eu/published/workflow?id=86cf02cc0868d238, https://usegalaxy.eu/published/workflow?id=889f2782ad82bd69, https://usegalaxy.eu/published/workflow?id=8b2f53745e720d0f, https://usegalaxy.eu/published/workflow?id=a705370bc2c13d5c, https://usegalaxy.eu/published/workflow?id=ab646c6ab6de7061, https://usegalaxy.eu/published/workflow?id=bf48b0eb15e8ff75, https://usegalaxy.eu/published/workflow?id=c9ef2d2ce92e2dfb, https://usegalaxy.eu/published/workflow?id=fc0b9efa7d2e61e6, https://usegalaxy.org.au/published/workflow?id=25d52afddaa3451b, https://usegalaxy.org.au/published/workflow?id=479c6b0a96ea1610, https://usegalaxy.org.au/published/workflow?id=4c7e0703aace6aa3, https://usegalaxy.org.au/published/workflow?id=59618ed15510f531, https://usegalaxy.org.au/published/workflow?id=69d91340fc7effa2, https://usegalaxy.org.au/published/workflow?id=803ef29108e36e58, https://usegalaxy.org.au/published/workflow?id=c4d23297f6fbf5f3, https://usegalaxy.org.au/published/workflow?id=c997a34b55425155, https://usegalaxy.org/published/workflow?id=21161075002d6778, https://usegalaxy.org/published/workflow?id=2ded909e7e3a9962, https://usegalaxy.org/published/workflow?id=48dafc35989f13b1, https://usegalaxy.org/published/workflow?id=5626a440a5798458, https://usegalaxy.org/published/workflow?id=574e42683dc3961b, https://usegalaxy.org/published/workflow?id=60f0d0d5d6e93941, https://usegalaxy.org/published/workflow?id=a8b9252fad5fe06a, https://usegalaxy.org/published/workflow?id=b7817a12dbee583c, https://usegalaxy.org/published/workflow?id=badd4b56dbdeaba7, https://usegalaxy.org/published/workflow?id=cfa9e6e722b086c8, https://workflowhub.eu/workflows/1061?version=1, https://workflowhub.eu/workflows/1114?version=1, https://workflowhub.eu/workflows/1439?version=1, https://workflowhub.eu/workflows/1473?version=1, https://workflowhub.eu/workflows/1492?version=2 |
assembly/mrsa-nanopore, microbiome/beer-data-analysis, microbiome/nanopore-16S-metagenomics, microbiome/pathogen-detection-from-nanopore-foodborne-data |
|
poretools |
poretools_events, poretools_extract, poretools_hist, poretools_nucdist, poretools_occupancy, poretools_qualdist, poretools_qualpos, poretools_squiggle, poretools_stats, poretools_tabular, poretools_times, poretools_winner, poretools_yield_plot |
A flexible toolkit for exploring datasets generated by nanopore sequencing devices from MinION for the purposes of quality control and downstream analysis. |
2017-12-17 |
https://poretools.readthedocs.io/en/latest/ |
0.6.1a1 |
poretools |
0.6.1a1 |
Up-to-date |
Fasta Manipulation, Fastq Manipulation |
Nucleic acid sequence analysis |
Nucleic acid sequence analysis |
DNA, Sequencing |
DNA, Sequencing |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/poretools |
poretools |
Poretools |
Flexible toolkit for exploring datasets generated by nanopore sequencing devices from MinION for the purposes of quality control and downstream analysis. |
|
13 |
13 |
13 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
13 |
0 |
188 |
268 |
18931 |
20989 |
425 |
499 |
33599 |
42577 |
83 |
87 |
9688 |
10246 |
0 |
0 |
0 |
0 |
73812 |
62218 |
854 |
696 |
|
|
|
ppanggolin |
ppanggolin_all, ppanggolin_msa, ppanggolin_projection, ppanggolin_rarefaction |
Microbial Partitioned PanGenome |
2025-01-22 |
https://github.com/labgem/PPanGGOLiN |
2.2.4 |
ppanggolin |
2.2.4 |
Up-to-date |
Genome annotation |
Rarefaction, Essential dynamics, Sequence assembly, Genome annotation |
Rarefaction, Essential dynamics, Sequence assembly, Genome annotation |
Metagenomics, Gene and protein families, Model organisms, Public health and epidemiology, Mapping |
Metagenomics, Gene and protein families, Model organisms, Public health and epidemiology, Mapping |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ppanggolin |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ppanggolin |
ppanggolin |
PPanGGOLiN |
PPanGGOLiN is a software suite used to create and manipulate prokaryotic pangenomes from a set of either genomic DNA sequences or provided genome annotations. It is designed to scale up to tens of thousands of genomes. It has the specificity to partition the pangenome using a statistical approach rather than using fixed thresholds which gives it the ability to work with low-quality data such as Metagenomic Assembled Genomes (MAGs) or Single-cell Amplified Genomes (SAGs) thus taking advantage of large scale environmental studies and letting users study the pangenome of uncultivable species |
|
0 |
0 |
4 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
genome-annotation/bacterial-pangenomics |
|
presto |
presto_alignsets, presto_assemblepairs, presto_buildconsensus, presto_collapseseq, presto_filterseq, presto_maskprimers, presto_pairseq, presto_parseheaders, presto_parselog, presto_partition, prestor_abseq3 |
pRESTO toolkit for immune repertoire analysis. |
2017-08-30 |
https://presto.readthedocs.io/ |
0.6.2 |
presto |
0.7.5 |
To update |
Sequence Analysis |
Nucleic acid sequence analysis |
Nucleic acid sequence analysis |
Sequencing, DNA, Immunology |
Sequencing, DNA, Immunology |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/presto |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/presto |
presto |
pRESTO |
Integrated collection of platform-independent Python modules for processing raw reads from high-throughput (next-generation) sequencing of lymphocyte repertoires. |
|
11 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
313 |
376 |
69942 |
73477 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
73477 |
69942 |
376 |
313 |
https://usegalaxy.org/published/workflow?id=34f3aac3aed0f97a, https://usegalaxy.org/published/workflow?id=51f936d1a4e849fa |
|
|
prinseq |
prinseq |
PRINSEQ is a tool for easy and rapid quality control and data processing of metagenomic and metatranscriptomic datasets |
2016-05-30 |
http://prinseq.sourceforge.net/manual.html |
@TOOL_VERSION+galaxy2 |
prinseq |
0.20.4 |
To update |
Fastq Manipulation, Metagenomics |
Read pre-processing, Sequence trimming, Sequence contamination filtering |
Read pre-processing, Sequence trimming, Sequence contamination filtering |
Transcriptomics, Metagenomics, Genomics |
Transcriptomics, Metagenomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/prinseq |
prinseq |
PRINSEQ |
PRINSEQ is a sequence processing tool that can be used to filter, reformat and trim genomic and metagenomic sequence data. It generates summary statistics of the input in graphical and tabular formats that can be used for quality control steps. PRINSEQ is available as both standalone and web-based versions. |
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
272 |
319 |
11812 |
12556 |
1398 |
1408 |
11519 |
11567 |
0 |
0 |
0 |
0 |
10 |
10 |
13 |
13 |
24136 |
23344 |
1737 |
1680 |
https://usegalaxy.eu/published/workflow?id=0609a4b1941d1a68, https://usegalaxy.eu/published/workflow?id=76e9cd837ea5e7da, https://usegalaxy.eu/published/workflow?id=8f415b0c409f56f7, https://usegalaxy.eu/published/workflow?id=9fddc44294236e8f, https://usegalaxy.eu/published/workflow?id=d6ff6be33b8bfe85, https://usegalaxy.eu/published/workflow?id=da19c0eaa757fa39, https://usegalaxy.org/published/workflow?id=20b7ae4b517a80fd, https://usegalaxy.org/published/workflow?id=46f184a0e95f3c1c, https://usegalaxy.org/published/workflow?id=5f878c4cc3bff68c, https://usegalaxy.org/published/workflow?id=a71fcbc60caae8b6, https://usegalaxy.org/published/workflow?id=afb67b4b9952f57d, https://workflowhub.eu/workflows/1271?version=3, https://workflowhub.eu/workflows/1272?version=2 |
|
|
prodigal |
prodigal |
A protein-coding gene prediction software tool for bacterial and archaeal genomes |
2024-03-14 |
https://github.com/hyattpd/Prodigal |
2.6.3 |
prodigal |
2.6.3 |
Up-to-date |
Genome annotation |
Genome annotation |
Genome annotation |
Genomics, Sequence analysis |
Genomics, Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/prodigal |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/prodigal |
prodigal |
Prodigal |
Fast, reliable protein-coding gene prediction for prokaryotic genomes. |
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
233 |
233 |
2484 |
2484 |
0 |
0 |
0 |
0 |
23 |
23 |
187 |
187 |
12 |
12 |
1432 |
1432 |
4103 |
4103 |
268 |
268 |
https://dev.workflowhub.eu/workflows/1357?version=1, https://usegalaxy.eu/published/workflow?id=b9c938d1af08124b, https://workflowhub.eu/workflows/1663?version=1 |
ecology/marine_omics_bgc |
|
progressivemauve |
progressivemauve, xmfa2gff3 |
Mauve/ProgressiveMauve Multiple Sequence Aligner |
2015-05-15 |
http://darlinglab.org/mauve/user-guide/progressivemauve.html |
|
progressivemauve |
snapshot_2015_02_13 |
To update |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/progressivemauve |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/progressivemauve |
|
|
|
|
2 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
0 |
661 |
695 |
2304 |
2514 |
1007 |
1007 |
3210 |
3210 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
5725 |
5515 |
1703 |
1669 |
|
|
|
prokka |
prokka |
Rapid annotation of prokaryotic genomes |
2016-10-07 |
http://github.com/tseemann/prokka |
1.14.6 |
prokka |
1.14.6 |
Up-to-date |
Sequence Analysis |
Gene prediction, Coding region prediction, Genome annotation |
Coding region prediction, Genome annotation |
Genomics, Model organisms, Virology |
Genomics, Model organisms, Virology |
crs4 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/prokka |
prokka |
Prokka |
Software tool to annotate bacterial, archaeal and viral genomes quickly and produce standards-compliant output files. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
0 |
8552 |
8940 |
525752 |
544268 |
12582 |
14164 |
377905 |
404664 |
4647 |
5382 |
163580 |
178101 |
340 |
340 |
5425 |
5425 |
1132458 |
1072662 |
28826 |
26121 |
https://dev.workflowhub.eu/workflows/1000?version=1, https://dev.workflowhub.eu/workflows/1005?version=1, https://dev.workflowhub.eu/workflows/1139?version=1, https://dev.workflowhub.eu/workflows/1182?version=2, https://dev.workflowhub.eu/workflows/1186?version=2, https://usegalaxy.eu/published/workflow?id=007ce6405d196df3, https://usegalaxy.eu/published/workflow?id=12653a1e65a20304, https://usegalaxy.eu/published/workflow?id=152223c8aed27357, https://usegalaxy.eu/published/workflow?id=165089132248a0b0, https://usegalaxy.eu/published/workflow?id=2e0075791f7fa384, https://usegalaxy.eu/published/workflow?id=36de05d50c703164, https://usegalaxy.eu/published/workflow?id=374797e58377c40f, https://usegalaxy.eu/published/workflow?id=37da7b42cb063a3a, https://usegalaxy.eu/published/workflow?id=42c0da2e86318b37, https://usegalaxy.eu/published/workflow?id=4ddbffe4b3fef275, https://usegalaxy.eu/published/workflow?id=5826e573b6f93762, https://usegalaxy.eu/published/workflow?id=628062a8cf93261f, https://usegalaxy.eu/published/workflow?id=6984990d0ac2e1e6, https://usegalaxy.eu/published/workflow?id=6a5c39c1d38a10c2, https://usegalaxy.eu/published/workflow?id=6d87481be47902e1, https://usegalaxy.eu/published/workflow?id=7aa32aba3fde0708, https://usegalaxy.eu/published/workflow?id=87231a6a7938cb95, https://usegalaxy.eu/published/workflow?id=8f3ce55d44d9f369, https://usegalaxy.eu/published/workflow?id=9219557de92e0203, https://usegalaxy.eu/published/workflow?id=94c3d329c31c712f, https://usegalaxy.eu/published/workflow?id=98bfad0c684011e9, https://usegalaxy.eu/published/workflow?id=a337bfb2eb1e583f, https://usegalaxy.eu/published/workflow?id=a448400f69594135, https://usegalaxy.eu/published/workflow?id=a847773b563b2328, https://usegalaxy.eu/published/workflow?id=a84bac86ec183d46, https://usegalaxy.eu/published/workflow?id=bf48b0eb15e8ff75, https://usegalaxy.eu/published/workflow?id=c9ef2d2ce92e2dfb, https://usegalaxy.eu/published/workflow?id=cf8591391a17a914, https://usegalaxy.eu/published/workflow?id=e16e524c557d7928, https://usegalaxy.eu/published/workflow?id=e1894c36f1ab4ab4, https://usegalaxy.eu/published/workflow?id=e8eb80ee09159bac, https://usegalaxy.eu/published/workflow?id=ea485dbabc76488d, https://usegalaxy.eu/published/workflow?id=ecf48fa50af560a0, https://usegalaxy.eu/published/workflow?id=f141db5179ea8422, https://usegalaxy.eu/published/workflow?id=f97e6fe1fcbc53a7, https://usegalaxy.eu/published/workflow?id=fe43cf59e48bf556, https://usegalaxy.org.au/published/workflow?id=2e29b21cdec7d0cc, https://usegalaxy.org.au/published/workflow?id=33401b29d277b447, https://usegalaxy.org.au/published/workflow?id=35f39173f0ac9179, https://usegalaxy.org.au/published/workflow?id=39c724282ee008e3, https://usegalaxy.org.au/published/workflow?id=59618ed15510f531, https://usegalaxy.org.au/published/workflow?id=6c67e22d18566af3, https://usegalaxy.org.au/published/workflow?id=7c343e5b55474d19, https://usegalaxy.org.au/published/workflow?id=87cdeb05b1ebeab0, https://usegalaxy.org.au/published/workflow?id=8f7d5ebead46a6d0, https://usegalaxy.org.au/published/workflow?id=914330feb75ea9ab, https://usegalaxy.org.au/published/workflow?id=b5403e4fff2961f9, https://usegalaxy.org.au/published/workflow?id=c997a34b55425155, https://usegalaxy.org.au/published/workflow?id=e20172eb0f30d6cd, https://usegalaxy.org.au/published/workflow?id=f01be6a7685ac476, https://usegalaxy.org.au/published/workflow?id=fa76b66785ce38b8, https://usegalaxy.org.au/published/workflow?id=fc664a96d8099652, https://usegalaxy.org/published/workflow?id=0795dd1d83662bae, https://usegalaxy.org/published/workflow?id=33d90e718ce500ef, https://usegalaxy.org/published/workflow?id=547f86db467bf620, https://usegalaxy.org/published/workflow?id=78d8b738f5715a8a, https://usegalaxy.org/published/workflow?id=7fc8b2398b6f093f, https://usegalaxy.org/published/workflow?id=8111bb9bb26bb665, https://usegalaxy.org/published/workflow?id=8d229c0f58a07ebe, https://usegalaxy.org/published/workflow?id=b43b72dcf5f7694d, https://usegalaxy.org/published/workflow?id=c451e4dca9981ed0, https://usegalaxy.org/published/workflow?id=c65bec6c332bf740, https://usegalaxy.org/published/workflow?id=d4f0a7ccb09f1e55, https://usegalaxy.org/published/workflow?id=e75bd7d392e65209, https://usegalaxy.org/published/workflow?id=fb01e1a49793c8be, https://workflowhub.eu/workflows/1497?version=1, https://workflowhub.eu/workflows/1598?version=1, https://workflowhub.eu/workflows/1617?version=1, https://workflowhub.eu/workflows/1767?version=1 |
assembly/chloroplast-assembly, assembly/unicycler-assembly, genome-annotation/annotation-with-prokka |
|
prot_scriber |
prot_scriber |
Protein annotation of short human readable descriptions |
2022-05-10 |
https://github.com/usadellab/prot-scriber |
0.1.6 |
prot-scriber |
0.1.6 |
Up-to-date |
Proteomics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/prot-scriber |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/prot-scriber |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
8 |
8 |
12 |
12 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
12 |
8 |
8 |
|
|
|
proteinortho |
proteinortho, proteinortho_clustering, proteinortho_grab_proteins, proteinortho_summary |
Proteinortho is a tool to detect orthologous proteins/genes within different species. |
2020-02-05 |
https://gitlab.com/paulklemm_PHD/proteinortho |
6.3.6 |
proteinortho |
6.3.6 |
Up-to-date |
Proteomics |
Sequence clustering, Sequence analysis |
Sequence clustering, Sequence analysis |
Comparative genomics |
Comparative genomics |
iuc |
https://gitlab.com/paulklemm_PHD/proteinortho |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/proteinortho |
proteinortho |
Proteinortho |
Proteinortho is a tool to detect orthologous genes within different species |
|
0 |
0 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
3 |
0 |
327 |
327 |
4314 |
4314 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4314 |
4314 |
327 |
327 |
https://dev.workflowhub.eu/workflows/1264?version=2, https://workflowhub.eu/workflows/1656?version=1, https://workflowhub.eu/workflows/358?version=1 |
ecology/phylogeny-data-prep |
|
psiclass |
psiclass |
PsiCLASS is a reference-based transcriptome assembler for single or multiple RNA-seq samples. |
2023-09-06 |
https://github.com/splicebox/PsiCLASS |
1.0.3 |
psiclass |
1.0.3 |
Up-to-date |
Transcriptomics |
Transcriptome assembly |
Transcriptome assembly |
Sequence assembly |
Sequence assembly |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/psiclass |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/psiclass |
psiclass |
PsiCLASS |
Reference-based transcriptome assembler for single or multiple RNA-seq samples |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
6 |
6 |
26 |
26 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
26 |
26 |
6 |
6 |
|
|
|
pureclip |
pureclip |
PureCLIP is an HMM based peak caller specifically designed for eCLIP/iCLIP data |
2018-04-26 |
https://github.com/skrakau/PureCLIP |
1.0.4 |
pureclip |
1.3.1 |
To update |
Sequence Analysis, RNA, CLIP-seq |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/pureclip |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pureclip |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
83 |
97 |
1298 |
1559 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1559 |
1298 |
97 |
83 |
https://usegalaxy.eu/published/workflow?id=24ddd188da35b061, https://usegalaxy.eu/published/workflow?id=8fb156020285e049 |
|
|
purge_dups |
purge_dups |
Purge haplotigs and overlaps in an assembly based on read depth |
2021-02-03 |
https://github.com/dfguan/purge_dups |
1.2.6 |
purge_dups |
1.2.6 |
Up-to-date |
Assembly |
Genome assembly, Read binning, Scaffolding |
Genome assembly, Read binning, Scaffolding |
Sequence assembly |
Sequence assembly |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/purge_dups |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/purge_dups |
purge_dups |
purge_dups |
Identifying and removing haplotypic duplication in primary genome assemblies | haplotypic duplication identification tool | scripts/pd_config.py: script to generate a configuration file used by run_purge_dups.py | purge haplotigs and overlaps in an assembly based on read depth | Given a primary assembly pri_asm and an alternative assembly hap_asm (optional, if you have one), follow the steps shown below to build your own purge_dups pipeline, steps with same number can be run simultaneously. Among all the steps, although step 4 is optional, we highly recommend our users to do so, because assemblers may produce overrepresented seqeuences. In such a case, The final step 4 can be applied to remove those seqeuences |
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
318 |
318 |
18481 |
18481 |
80 |
80 |
1310 |
1310 |
68 |
68 |
2531 |
2531 |
0 |
0 |
0 |
0 |
22322 |
22322 |
466 |
466 |
https://dev.workflowhub.eu/workflows/1002?version=1, https://dev.workflowhub.eu/workflows/1187?version=2, https://dev.workflowhub.eu/workflows/233?version=1, https://usegalaxy.eu/published/workflow?id=032a7281a86eba0d, https://usegalaxy.eu/published/workflow?id=03bb4c20a1f4b4de, https://usegalaxy.eu/published/workflow?id=0444c98a3ca2a3ca, https://usegalaxy.eu/published/workflow?id=0a3ebee985c26060, https://usegalaxy.eu/published/workflow?id=0f207a15b6f7fa10, https://usegalaxy.eu/published/workflow?id=12b0bd336c76a874, https://usegalaxy.eu/published/workflow?id=1af73dc855d0a5ed, https://usegalaxy.eu/published/workflow?id=1d1ae39386b5c318, https://usegalaxy.eu/published/workflow?id=1e7f4ba6261f979c, https://usegalaxy.eu/published/workflow?id=2294ef9515bcf972, https://usegalaxy.eu/published/workflow?id=29c97d43eeb8ed63, https://usegalaxy.eu/published/workflow?id=3192f92ac4d389b8, https://usegalaxy.eu/published/workflow?id=3480204a99bf4a35, https://usegalaxy.eu/published/workflow?id=399048afb4acef3d, https://usegalaxy.eu/published/workflow?id=5bf6718e7d6158d2, https://usegalaxy.eu/published/workflow?id=6865f33cffca4922, https://usegalaxy.eu/published/workflow?id=69be0fb8276753ec, https://usegalaxy.eu/published/workflow?id=6c14b08a7ef7e79a, https://usegalaxy.eu/published/workflow?id=700fa3ab11a8f3e2, https://usegalaxy.eu/published/workflow?id=83a1b8949d87e3da, https://usegalaxy.eu/published/workflow?id=8f105de48f7f1d9d, https://usegalaxy.eu/published/workflow?id=915ffef5b14c871e, https://usegalaxy.eu/published/workflow?id=9667bf36217083b7, https://usegalaxy.eu/published/workflow?id=9d209bcdae1a475e, https://usegalaxy.eu/published/workflow?id=a3f082ff30357040, https://usegalaxy.eu/published/workflow?id=ade6f36f6a035a73, https://usegalaxy.eu/published/workflow?id=aef62f4d0bba003b, https://usegalaxy.eu/published/workflow?id=b5de94e9cde071ab, https://usegalaxy.eu/published/workflow?id=bac84a7033c3423f, https://usegalaxy.eu/published/workflow?id=ca39822372847670, https://usegalaxy.eu/published/workflow?id=d02458f1d7d9c3f4, https://usegalaxy.eu/published/workflow?id=d172f927a489e9f8, https://usegalaxy.eu/published/workflow?id=d17d6029914d666b, https://usegalaxy.eu/published/workflow?id=d1bd5d8597c1d31d, https://usegalaxy.eu/published/workflow?id=d261bbd05889ce75, https://usegalaxy.eu/published/workflow?id=d67299c34e63f3d9, https://usegalaxy.eu/published/workflow?id=d924fafd8e042952, https://usegalaxy.eu/published/workflow?id=f08b29e4cef76cd5, https://usegalaxy.eu/published/workflow?id=f3e17c8dd80def27, https://usegalaxy.eu/published/workflow?id=f7cdaf862e6599c0, https://usegalaxy.eu/published/workflow?id=f882d14fc5dabbb9, https://usegalaxy.eu/published/workflow?id=f91245e580319e65, https://usegalaxy.org.au/published/workflow?id=000c2f1884bc4687, https://usegalaxy.org.au/published/workflow?id=06564b19b0655c19, https://usegalaxy.org.au/published/workflow?id=0810be3d7d2b0322, https://usegalaxy.org.au/published/workflow?id=094655df3ccd0b00, https://usegalaxy.org.au/published/workflow?id=0c11e1ba5e8fa21b, https://usegalaxy.org.au/published/workflow?id=0df25e2dbd5e8ed5, https://usegalaxy.org.au/published/workflow?id=1905ec04d5841f09, https://usegalaxy.org.au/published/workflow?id=1ce2a725df3adb74, https://usegalaxy.org.au/published/workflow?id=1dcc1b25c9091fbf, https://usegalaxy.org.au/published/workflow?id=1f49c65625b9d2de, https://usegalaxy.org.au/published/workflow?id=2356584eac7fa234, https://usegalaxy.org.au/published/workflow?id=328adfa7d90b1d54, https://usegalaxy.org.au/published/workflow?id=40740c32b9a550c9, https://usegalaxy.org.au/published/workflow?id=41282d51f9112552, https://usegalaxy.org.au/published/workflow?id=434127690544d0e9, https://usegalaxy.org.au/published/workflow?id=4cb69c84b73ea9dd, https://usegalaxy.org.au/published/workflow?id=4e7930c7286c6e9e, https://usegalaxy.org.au/published/workflow?id=4ebf1297793870e7, https://usegalaxy.org.au/published/workflow?id=543fb2d9431a7e13, https://usegalaxy.org.au/published/workflow?id=6f76c43e6d2d7f74, https://usegalaxy.org.au/published/workflow?id=7168c01be9997823, https://usegalaxy.org.au/published/workflow?id=7909da83448d8bf4, https://usegalaxy.org.au/published/workflow?id=79bf7b0f5e9052d7, https://usegalaxy.org.au/published/workflow?id=81a5b96452c71a52, https://usegalaxy.org.au/published/workflow?id=82d0876385b5ac60, https://usegalaxy.org.au/published/workflow?id=a1015b83baa0eb6d, https://usegalaxy.org.au/published/workflow?id=a209f43d8a3cc853, https://usegalaxy.org.au/published/workflow?id=a40dadc943a0db1e, https://usegalaxy.org.au/published/workflow?id=a740543c4e9808f1, https://usegalaxy.org.au/published/workflow?id=ac8bdc5a0b2d70cd, https://usegalaxy.org.au/published/workflow?id=b310af289ada88bc, https://usegalaxy.org.au/published/workflow?id=c556c2270200801d, https://usegalaxy.org.au/published/workflow?id=c853aa707fcddf4e, https://usegalaxy.org.au/published/workflow?id=cbf022e349d726d9, https://usegalaxy.org.au/published/workflow?id=d83d5ecf31c20490, https://usegalaxy.org.au/published/workflow?id=e5dfeff4a3068f36, https://usegalaxy.org.au/published/workflow?id=ecfb8a08e5a40e15, https://usegalaxy.org.au/published/workflow?id=f06370394b061e08, https://usegalaxy.org.au/published/workflow?id=f895914e322c8b77, https://usegalaxy.org.au/published/workflow?id=fea0e6c02c2f6274, https://usegalaxy.org/published/workflow?id=10d5e195501603bc, https://usegalaxy.org/published/workflow?id=1b434bfc3aac0022, https://usegalaxy.org/published/workflow?id=237ca9f36ca266e7, https://usegalaxy.org/published/workflow?id=242ef2e9dee35702, https://usegalaxy.org/published/workflow?id=2f1469dab87a3649, https://usegalaxy.org/published/workflow?id=3179c157fa5a2fdd, https://usegalaxy.org/published/workflow?id=3753dcca4100e976, https://usegalaxy.org/published/workflow?id=426358bd988cb39d, https://usegalaxy.org/published/workflow?id=45c0b677c4920d03, https://usegalaxy.org/published/workflow?id=49c9e8161a46667f, https://usegalaxy.org/published/workflow?id=4bf38f5b45faa8a1, https://usegalaxy.org/published/workflow?id=5edabfc62f58d8cf, https://usegalaxy.org/published/workflow?id=65ccf48b7872e36c, https://usegalaxy.org/published/workflow?id=6fc7497c86ebd8ee, https://usegalaxy.org/published/workflow?id=73c20d784b7ef81a, https://usegalaxy.org/published/workflow?id=771345c66d5b9700, https://usegalaxy.org/published/workflow?id=7adf904dea83e699, https://usegalaxy.org/published/workflow?id=86c67855acbf6124, https://usegalaxy.org/published/workflow?id=8ccb42012dcb5db2, https://usegalaxy.org/published/workflow?id=950c7245a6c3f6e9, https://usegalaxy.org/published/workflow?id=96bd0007dceec123, https://usegalaxy.org/published/workflow?id=9ab68c65337b893b, https://usegalaxy.org/published/workflow?id=b12f99e2233fcca6, https://usegalaxy.org/published/workflow?id=c09b8a0c96123cbb, https://usegalaxy.org/published/workflow?id=cb4ccd3068819418, https://usegalaxy.org/published/workflow?id=cc50da71cdf6f244, https://usegalaxy.org/published/workflow?id=cfd5dc3c7bc1e832, https://usegalaxy.org/published/workflow?id=d2e8a6b39fe88f4c, https://usegalaxy.org/published/workflow?id=d4b2b85db47c405e, https://usegalaxy.org/published/workflow?id=e12e642b88a0fe08, https://usegalaxy.org/published/workflow?id=eaf96fa3c39c210b, https://usegalaxy.org/published/workflow?id=f93a4f6b5f3aaaed, https://usegalaxy.org/published/workflow?id=fd155fcba9bed7ff, https://workflowhub.eu/workflows/1163?version=2, https://workflowhub.eu/workflows/1607?version=1, https://workflowhub.eu/workflows/237?version=2, https://workflowhub.eu/workflows/606?version=2, https://workflowhub.eu/workflows/633?version=21, https://workflowhub.eu/workflows/701?version=1, https://workflowhub.eu/workflows/751?version=16 |
assembly/vgp_genome_assembly |
|
pycoqc |
pycoqc |
QC metrics for ONT Basecalling |
2021-03-02 |
https://github.com/tleonardi/pycoQC |
2.5.2 |
pycoqc |
2.5.2 |
Up-to-date |
Nanopore |
Sequencing quality control, Statistical calculation |
Sequencing quality control, Statistical calculation |
Sequence analysis, Data quality management, Sequencing |
Sequence analysis, Data quality management, Sequencing |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/pycoqc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pycoqc |
pycoqc |
pycoQC |
PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
665 |
665 |
23072 |
23072 |
911 |
911 |
2798 |
2798 |
486 |
486 |
946 |
946 |
146 |
146 |
292 |
292 |
27108 |
27108 |
2208 |
2208 |
https://usegalaxy.org.au/published/workflow?id=01393562b82f1884, https://usegalaxy.org.au/published/workflow?id=0d1d4392c3042fbd, https://usegalaxy.org.au/published/workflow?id=31dbe7344d72b903, https://usegalaxy.org.au/published/workflow?id=364025bd13970867, https://usegalaxy.org.au/published/workflow?id=419e09e4a2fa6d38, https://usegalaxy.org.au/published/workflow?id=5f4e164c18810cca, https://usegalaxy.org.au/published/workflow?id=866b69c5ee6601fe, https://usegalaxy.org.au/published/workflow?id=8fe84de499e96485, https://usegalaxy.org.au/published/workflow?id=98f285d6f0253b81, https://usegalaxy.org.au/published/workflow?id=c87b645aedfb857d, https://usegalaxy.org.au/published/workflow?id=da3d4b39b0d655e7, https://usegalaxy.org.au/published/workflow?id=ed43af416c6a7d3b, https://usegalaxy.org.au/published/workflow?id=fdf32312e8567093 |
sequence-analysis/quality-control |
|
pygenometracks |
pygenomeTracks |
pyGenomeTracks: Standalone program and library to plot beautiful genome browser tracks. |
2018-06-08 |
https://github.com/deeptools/pyGenomeTracks |
3.8 |
pygenometracks |
3.9 |
To update |
Visualization |
Visualisation, Formatting |
Visualisation, Formatting |
Model organisms, Imaging, Workflows |
Model organisms, Imaging, Workflows |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pygenometracks |
pygenometracks |
pyGenomeTracks |
reproducible plots for multivariate genomic data sets.Standalone program and library to plot beautiful genome browser tracks.pyGenomeTracks aims to produce high-quality genome browser tracks that are highly customizable. Currently, it is possible to plot:. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1147 |
1191 |
13678 |
14617 |
1204 |
1204 |
9770 |
9770 |
155 |
155 |
4012 |
4012 |
31 |
31 |
62 |
62 |
28461 |
27522 |
2581 |
2537 |
https://dev.workflowhub.eu/workflows/1169?version=2, https://dev.workflowhub.eu/workflows/1324?version=3, https://dev.workflowhub.eu/workflows/1329?version=5, https://usegalaxy.eu/published/workflow?id=02655d0e4af0ee0d, https://usegalaxy.eu/published/workflow?id=2a9c812f59b7b36c, https://usegalaxy.eu/published/workflow?id=4464d3b0fc782a1a, https://usegalaxy.eu/published/workflow?id=47a0407867a90f95, https://usegalaxy.eu/published/workflow?id=506a451679fe25b4, https://usegalaxy.eu/published/workflow?id=72201ffaf488f278, https://usegalaxy.eu/published/workflow?id=9843ae66c3b367b7, https://usegalaxy.eu/published/workflow?id=985044b4b2c51425, https://usegalaxy.eu/published/workflow?id=9f8a93cfffb31cd6, https://usegalaxy.eu/published/workflow?id=9fc8b89954c04ee1, https://usegalaxy.eu/published/workflow?id=a28c207730e7e13d, https://usegalaxy.eu/published/workflow?id=f394d1b12779ba41, https://usegalaxy.org.au/published/workflow?id=13ce18408ee7acc9, https://usegalaxy.org.au/published/workflow?id=99821674db7682bb, https://usegalaxy.org/published/workflow?id=06eaa5b141fe7a08, https://usegalaxy.org/published/workflow?id=0bc1b8888d8b20c4, https://usegalaxy.org/published/workflow?id=1dc312e3fba9f810, https://usegalaxy.org/published/workflow?id=4998f171ec922c7d, https://usegalaxy.org/published/workflow?id=582f3de3971fc38c, https://usegalaxy.org/published/workflow?id=7353afb9301780e5, https://usegalaxy.org/published/workflow?id=b31ab9e76409a9b7, https://usegalaxy.org/published/workflow?id=e33f6a058c5f57e5, https://usegalaxy.org/published/workflow?id=f13432eef7ac28e9, https://usegalaxy.org/published/workflow?id=f80b80aa7fb196ba, https://workflowhub.eu/workflows/1568?version=1, https://workflowhub.eu/workflows/1688?version=1, https://workflowhub.eu/workflows/1715?version=1, https://workflowhub.eu/workflows/420?version=3 |
epigenetics/atac-seq, transcriptomics/differential-isoform-expression, transcriptomics/ref-based |
|
pysradb_search |
pysradb_search |
pysradb allows to retrieve metadata, such as run accession numbers, from SRA and ENA based on multiple criteria. |
2022-11-10 |
https://github.com/saketkc/pysradb |
1.4.2 |
pysradb |
2.2.2 |
To update |
Sequence Analysis |
Deposition, Data retrieval |
Deposition, Data retrieval |
Sequencing, Gene transcripts, Bioinformatics |
Sequencing, Gene transcripts, Bioinformatics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pysradb |
pysradb |
pysradb |
Python package to query next-generation sequencing metadata and data from NCBI Sequence Read Archive. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
42 |
42 |
175 |
175 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
175 |
175 |
42 |
42 |
|
|
|
qfilt |
qfilt |
Filter sequencing data |
2018-06-06 |
https://github.com/veg/qfilt |
1.0.0+galaxy1 |
qfilt |
0.0.1 |
To update |
Fastq Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/qfilt |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/qfilt |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
qiime |
qiime_collapse_samples, qiime_make_otu_table |
QIIME to perform microbial community analysis |
2017-01-16 |
http://www.qiime.org |
|
qiime |
1.9.1 |
To update |
Metagenomics |
Demultiplexing, Visualisation, Taxonomic classification, Phylogenetic analysis, Sequencing quality control |
Demultiplexing, Visualisation, Taxonomic classification, Phylogenetic analysis, Sequencing quality control |
Microbial ecology, Phylogeny, Metagenomics, Metatranscriptomics |
Microbial ecology, Phylogeny, Metagenomics, Metatranscriptomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/qiime/qiime_add_on |
qiime_add_on |
qiime_add_on |
QIIME 2 is a next-generation microbiome bioinformatics platform that is extensible, free, open source, and community developed. |
|
0 |
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
0 |
184 |
224 |
2109 |
2460 |
0 |
0 |
0 |
0 |
1 |
1 |
2 |
2 |
7 |
7 |
13 |
13 |
2475 |
2124 |
232 |
192 |
https://usegalaxy.eu/published/workflow?id=8f747dbff3216993, https://usegalaxy.eu/published/workflow?id=e14b81a8c0b1b7a4 |
|
|
qiime |
qiime_align_seqs, qiime_alpha_diversity, qiime_alpha_rarefaction, qiime_assign_taxonomy, qiime_beta_diversity, qiime_beta_diversity_through_plots, qiime_compare_categories, qiime_core_diversity, qiime_count_seqs, qiime_extract_barcodes, qiime_filter_alignment, qiime_filter_fasta, qiime_filter_otus_from_otu_table, qiime_filter_samples_from_otu_table, qiime_filter_taxa_from_otu_table, qiime_jackknifed_beta_diversity, qiime_make_emperor, qiime_make_otu_heatmap, qiime_make_phylogeny, qiime_multiple_join_paired_ends, qiime_multiple_split_libraries_fastq, qiime_pick_closed_reference_otus, qiime_pick_open_reference_otus, qiime_pick_otus, qiime_pick_rep_set, qiime_plot_taxa_summary, qiime_split_libraries, qiime_split_libraries_fastq, qiime_summarize_taxa, qiime_summarize_taxa_through_plots, qiime_upgma_cluster, qiime_validate_mapping_file |
QIIME to perform microbial community analysis |
2017-01-16 |
http://www.qiime.org |
|
qiime |
1.9.1 |
To update |
Metagenomics |
Demultiplexing, Visualisation, Taxonomic classification, Phylogenetic analysis, Sequencing quality control |
Demultiplexing, Visualisation, Taxonomic classification, Phylogenetic analysis, Sequencing quality control |
Microbial ecology, Phylogeny, Metagenomics, Metatranscriptomics |
Microbial ecology, Phylogeny, Metagenomics, Metatranscriptomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/qiime/qiime_core |
qiime_core |
qiime_core |
QIIME 2™ is a next-generation microbiome bioinformatics platform that is extensible, free, open source, and community developed. |
|
0 |
0 |
32 |
32 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
32 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
31 |
31 |
0 |
395 |
438 |
33828 |
38321 |
1 |
1 |
1617 |
1617 |
1 |
1 |
16 |
16 |
16 |
16 |
4475 |
4479 |
44433 |
39936 |
456 |
413 |
https://dev.workflowhub.eu/workflows/1287?version=2, https://dev.workflowhub.eu/workflows/1292?version=2, https://usegalaxy.eu/published/workflow?id=3acfb87be6db2303, https://usegalaxy.eu/published/workflow?id=58955868b504c60d, https://usegalaxy.eu/published/workflow?id=8f747dbff3216993, https://usegalaxy.eu/published/workflow?id=e14b81a8c0b1b7a4, https://usegalaxy.fr/published/workflow?id=41264142d3c00016, https://usegalaxy.fr/published/workflow?id=8b1678200a1d157a, https://workflowhub.eu/workflows/1630?version=1, https://workflowhub.eu/workflows/1635?version=1 |
sequence-analysis/Manage_AB1_Sanger |
|
qiime_extract_viz |
qiime_extract_viz |
Extract vizualization from QIIME artifacts |
2022-10-06 |
http://www.qiime.org |
0.1.0 |
unzip |
|
To update |
Metagenomics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiimme_extract_viz |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/qiime_extract_viz |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
17 |
17 |
104 |
104 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
104 |
104 |
17 |
17 |
https://usegalaxy.eu/published/workflow?id=be9ff4159593cc34 |
|
|
qq_tools |
qq_manhattan |
|
2020-10-07 |
https://CRAN.R-project.org/package=qqman |
0.1.0 |
r-qqman |
0.1.4 |
To update |
Visualization, Variant Analysis |
|
|
|
|
iuc |
|
https://github.com/galaxyproject/tools-iuc/tree/main/tools/qq_tools |
|
|
|
|
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
16 |
16 |
16 |
16 |
1 |
1 |
https://usegalaxy.fr/published/workflow?id=4ec0bc782472fa10 |
|
|
qualimap |
qualimap_bamqc, qualimap_counts, qualimap_multi_bamqc, qualimap_rnaseq |
Qualimap 2 is a platform-independent application written in Java andR that facilitates the quality control of alignment sequencing data and itsderivatives like feature counts. |
2019-10-10 |
http://qualimap.bioinfo.cipf.es/ |
2.3 |
qualimap |
2.3 |
Up-to-date |
Sequence Analysis, Transcriptomics, SAM |
Sequencing quality control |
Sequencing quality control |
Data quality management |
Data quality management |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/qualimap |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/qualimap |
qualimap |
QualiMap |
Platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data. |
|
4 |
4 |
4 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
4 |
4 |
4 |
0 |
2692 |
2765 |
703635 |
704758 |
3219 |
3229 |
109291 |
109374 |
772 |
772 |
37544 |
37544 |
48 |
48 |
6750 |
6750 |
858426 |
857220 |
6814 |
6731 |
https://dev.workflowhub.eu/workflows/1069?version=2, https://dev.workflowhub.eu/workflows/143?version=1, https://dev.workflowhub.eu/workflows/144?version=1, https://dev.workflowhub.eu/workflows/195?version=2, https://dev.workflowhub.eu/workflows/196?version=2, https://dev.workflowhub.eu/workflows/583?version=1, https://usegalaxy.eu/published/workflow?id=0189bab68f828d86, https://usegalaxy.eu/published/workflow?id=0be293debca8fb9b, https://usegalaxy.eu/published/workflow?id=0f6a7bd5362e4a2b, https://usegalaxy.eu/published/workflow?id=220961d803697f54, https://usegalaxy.eu/published/workflow?id=2573209308aaad23, https://usegalaxy.eu/published/workflow?id=2c3d05023c02113e, https://usegalaxy.eu/published/workflow?id=2c79eee5ca5a3b09, https://usegalaxy.eu/published/workflow?id=2d9d4445a1871230, https://usegalaxy.eu/published/workflow?id=3fb550d7c2bc390a, https://usegalaxy.eu/published/workflow?id=429ae28a178cd07c, https://usegalaxy.eu/published/workflow?id=45fc2dada84d251e, https://usegalaxy.eu/published/workflow?id=476db04368d5e90c, https://usegalaxy.eu/published/workflow?id=4b4bfc79205d83f1, https://usegalaxy.eu/published/workflow?id=4c75ab0be3c56494, https://usegalaxy.eu/published/workflow?id=4d97068a725c975c, https://usegalaxy.eu/published/workflow?id=529f30e894beacc2, https://usegalaxy.eu/published/workflow?id=52bdf400f97c5770, https://usegalaxy.eu/published/workflow?id=53de0e742573e588, https://usegalaxy.eu/published/workflow?id=579dd1e95e76402f, https://usegalaxy.eu/published/workflow?id=5c15f251642bfa1f, https://usegalaxy.eu/published/workflow?id=5ed38d8114bcd6f7, https://usegalaxy.eu/published/workflow?id=629e57958afed44c, https://usegalaxy.eu/published/workflow?id=6dbac47941a804da, https://usegalaxy.eu/published/workflow?id=6e1fe7372e93fae0, https://usegalaxy.eu/published/workflow?id=6ed1016dfdf9f928, https://usegalaxy.eu/published/workflow?id=7117dbcbd5d12de5, https://usegalaxy.eu/published/workflow?id=7136ce9f18c74853, https://usegalaxy.eu/published/workflow?id=74f19aff1b9cdd6b, https://usegalaxy.eu/published/workflow?id=7bdd9ad918edab0b, https://usegalaxy.eu/published/workflow?id=98bfad0c684011e9, https://usegalaxy.eu/published/workflow?id=9feebfc6c34da287, https://usegalaxy.eu/published/workflow?id=a15dabcadb63b46d, https://usegalaxy.eu/published/workflow?id=a31100610fba17a1, https://usegalaxy.eu/published/workflow?id=a6f4371ef9bc1aab, https://usegalaxy.eu/published/workflow?id=ada52ba09b462567, https://usegalaxy.eu/published/workflow?id=af30010868c97316, https://usegalaxy.eu/published/workflow?id=b77e3b08092fa73e, https://usegalaxy.eu/published/workflow?id=b97532c398b821a2, https://usegalaxy.eu/published/workflow?id=c789ab71876c6ead, https://usegalaxy.eu/published/workflow?id=c9ef2d2ce92e2dfb, https://usegalaxy.eu/published/workflow?id=cd25f70f71683ab6, https://usegalaxy.eu/published/workflow?id=d88145e7475e0b7b, https://usegalaxy.eu/published/workflow?id=ddd604341afd9cf7, https://usegalaxy.eu/published/workflow?id=ed20bd120064bab0, https://usegalaxy.eu/published/workflow?id=ee6dc47660540ba6, https://usegalaxy.eu/published/workflow?id=f97e6fe1fcbc53a7, https://usegalaxy.eu/published/workflow?id=fc216dfb0ec9ed41, https://usegalaxy.eu/published/workflow?id=fcf745185d6e0ea4, https://usegalaxy.fr/published/workflow?id=2345fad7dac13daa, https://usegalaxy.fr/published/workflow?id=591c57173e259ca6, https://usegalaxy.fr/published/workflow?id=61235264d5d2f666, https://usegalaxy.fr/published/workflow?id=727cfdb7c79287d1, https://usegalaxy.fr/published/workflow?id=7d27dd394b921846, https://usegalaxy.fr/published/workflow?id=98529cff0ef36b91, https://usegalaxy.fr/published/workflow?id=d0d12c0b80c286f9, https://usegalaxy.fr/published/workflow?id=e0b225d4b2556365, https://usegalaxy.fr/published/workflow?id=e3c04a30258421aa, https://usegalaxy.org.au/published/workflow?id=094a545d44ce28cc, https://usegalaxy.org.au/published/workflow?id=0c6f7bfc826433c4, https://usegalaxy.org.au/published/workflow?id=2b2ce7e1206d177d, https://usegalaxy.org.au/published/workflow?id=3223ceaa2b58d940, https://usegalaxy.org.au/published/workflow?id=3c657dd766d02f6a, https://usegalaxy.org.au/published/workflow?id=47ce6a2d30887637, https://usegalaxy.org.au/published/workflow?id=48a60965b6b3ff54, https://usegalaxy.org.au/published/workflow?id=49b5c35b9723fa62, https://usegalaxy.org.au/published/workflow?id=4bc8ac41ecff7daf, https://usegalaxy.org.au/published/workflow?id=5cf5334877cc1297, https://usegalaxy.org.au/published/workflow?id=6b1b0a945d367b4c, https://usegalaxy.org.au/published/workflow?id=7563b3ef697a69fd, https://usegalaxy.org.au/published/workflow?id=7fd58f5fc93f414e, https://usegalaxy.org.au/published/workflow?id=810242a3dc4f6170, https://usegalaxy.org.au/published/workflow?id=888eb87b62c4e6dd, https://usegalaxy.org.au/published/workflow?id=888f8377eb6eabf2, https://usegalaxy.org.au/published/workflow?id=932bad88f8dc8d33, https://usegalaxy.org.au/published/workflow?id=b432a1312859edd2, https://usegalaxy.org.au/published/workflow?id=ba7a9d4c857d26b7, https://usegalaxy.org.au/published/workflow?id=baa763dbdf6afb71, https://usegalaxy.org.au/published/workflow?id=bcf230e526632064, https://usegalaxy.org.au/published/workflow?id=be9213411c520096, https://usegalaxy.org.au/published/workflow?id=c1ce3f2ae7c81c3e, https://usegalaxy.org.au/published/workflow?id=c9156ca3df2b595c, https://usegalaxy.org.au/published/workflow?id=ccf936c5b2f2c2f3, https://usegalaxy.org.au/published/workflow?id=d35d05be576e8b13, https://usegalaxy.org.au/published/workflow?id=e439a0e17a90d24c, https://usegalaxy.org.au/published/workflow?id=fca05a51c9c91df4, https://usegalaxy.org.au/published/workflow?id=fe5542c99cdc57ce, https://usegalaxy.org/published/workflow?id=0a57740c68e85e21, https://usegalaxy.org/published/workflow?id=0fa2ce12c2874b1d, https://usegalaxy.org/published/workflow?id=1518c8c50747a1c1, https://usegalaxy.org/published/workflow?id=1f48b44fa22ac5fc, https://usegalaxy.org/published/workflow?id=4357180d40560019, https://usegalaxy.org/published/workflow?id=4b41a8247f52c463, https://usegalaxy.org/published/workflow?id=4cf8cc42e97b2da6, https://usegalaxy.org/published/workflow?id=5641d1cbe795203f, https://usegalaxy.org/published/workflow?id=6b11d738ee57f245, https://usegalaxy.org/published/workflow?id=7dde0721a382ea3e, https://usegalaxy.org/published/workflow?id=7e2651e5ed17e3db, https://usegalaxy.org/published/workflow?id=88d0b64011c3148c, https://usegalaxy.org/published/workflow?id=8b81b9a3b49bbf98, https://usegalaxy.org/published/workflow?id=8e1c6ad6ff623015, https://usegalaxy.org/published/workflow?id=953d9cbe05e632a8, https://usegalaxy.org/published/workflow?id=97263f3308077ff0, https://usegalaxy.org/published/workflow?id=98b2ac8fc75781f8, https://usegalaxy.org/published/workflow?id=9adf8691809326e5, https://usegalaxy.org/published/workflow?id=9fc9f1db50019929, https://usegalaxy.org/published/workflow?id=b1b75a9323d25085, https://usegalaxy.org/published/workflow?id=b34ba9b2e4d8f050, https://usegalaxy.org/published/workflow?id=bd355e8ce58a139e, https://usegalaxy.org/published/workflow?id=bf3ccae8d5b6ef58, https://usegalaxy.org/published/workflow?id=c12e6b7896f8e114, https://usegalaxy.org/published/workflow?id=c7b2d2ccc4b0dec5, https://usegalaxy.org/published/workflow?id=cdf5dffbed938d49, https://usegalaxy.org/published/workflow?id=d3428dd172a78102, https://usegalaxy.org/published/workflow?id=d4ea6cdd40522eb1, https://usegalaxy.org/published/workflow?id=d96bd5c9fb553f2c, https://usegalaxy.org/published/workflow?id=e282f505ba9f729f, https://usegalaxy.org/published/workflow?id=e7ce46762faccaac, https://usegalaxy.org/published/workflow?id=eb4f7dbca0114270, https://workflowhub.eu/workflows/1035?version=1, https://workflowhub.eu/workflows/110?version=11, https://workflowhub.eu/workflows/111?version=5, https://workflowhub.eu/workflows/1260?version=2, https://workflowhub.eu/workflows/155?version=5, https://workflowhub.eu/workflows/1647?version=1, https://workflowhub.eu/workflows/439?version=3, https://workflowhub.eu/workflows/519?version=1, https://workflowhub.eu/workflows/628?version=1 |
variant-analysis/aiv-analysis, variant-analysis/pox-tiled-amplicon, variant-analysis/tb-variant-analysis |
|
quast |
quast |
Quast (Quality ASsessment Tool) evaluates genome assemblies. |
2016-09-07 |
http://quast.bioinf.spbau.ru/ |
5.3.0 |
quast |
5.3.0 |
Up-to-date |
Assembly |
Visualisation, Sequence assembly validation |
Visualisation, Sequence assembly validation |
Sequence assembly |
Sequence assembly |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/quast |
quast |
QUAST |
QUAST stands for QUality ASsessment Tool. It evaluates a quality of genome assemblies by computing various metrics and providing nice reports. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
8965 |
9298 |
91117 |
94741 |
11073 |
12385 |
66080 |
72394 |
4262 |
4551 |
38178 |
40828 |
463 |
465 |
8175 |
8213 |
216176 |
203550 |
26699 |
24763 |
https://dev.workflowhub.eu/workflows/1000?version=1, https://dev.workflowhub.eu/workflows/1002?version=1, https://dev.workflowhub.eu/workflows/1003?version=1, https://dev.workflowhub.eu/workflows/1004?version=1, https://dev.workflowhub.eu/workflows/1006?version=1, https://dev.workflowhub.eu/workflows/1103?version=1, https://dev.workflowhub.eu/workflows/1120?version=1, https://dev.workflowhub.eu/workflows/1128?version=1, https://dev.workflowhub.eu/workflows/1131?version=2, https://dev.workflowhub.eu/workflows/1135?version=2, https://dev.workflowhub.eu/workflows/1158?version=2, https://dev.workflowhub.eu/workflows/1170?version=2, https://dev.workflowhub.eu/workflows/1178?version=1, https://dev.workflowhub.eu/workflows/1182?version=2, https://dev.workflowhub.eu/workflows/1187?version=2, https://dev.workflowhub.eu/workflows/1192?version=2, https://usegalaxy.eu/published/workflow?id=007ce6405d196df3, https://usegalaxy.eu/published/workflow?id=01dc0619e050dc91, https://usegalaxy.eu/published/workflow?id=0404013d5c27210d, https://usegalaxy.eu/published/workflow?id=0563f58718be932d, https://usegalaxy.eu/published/workflow?id=0ebfab0e957b7267, https://usegalaxy.eu/published/workflow?id=1524b189069b42a5, https://usegalaxy.eu/published/workflow?id=165089132248a0b0, https://usegalaxy.eu/published/workflow?id=1860e02bcb894a64, https://usegalaxy.eu/published/workflow?id=1e5f1d9a51032e44, https://usegalaxy.eu/published/workflow?id=2e0075791f7fa384, https://usegalaxy.eu/published/workflow?id=309fc4fc2e0da89c, https://usegalaxy.eu/published/workflow?id=30b514cfb9cce524, https://usegalaxy.eu/published/workflow?id=3303a04887a47675, https://usegalaxy.eu/published/workflow?id=34a07bf6407510ef, https://usegalaxy.eu/published/workflow?id=374797e58377c40f, https://usegalaxy.eu/published/workflow?id=37da7b42cb063a3a, https://usegalaxy.eu/published/workflow?id=3d937648809ca4e7, https://usegalaxy.eu/published/workflow?id=3f6c7249ef71ae41, https://usegalaxy.eu/published/workflow?id=4216424f032c055f, https://usegalaxy.eu/published/workflow?id=45c0933b5c522628, https://usegalaxy.eu/published/workflow?id=4ddbffe4b3fef275, https://usegalaxy.eu/published/workflow?id=56edd22d14392691, https://usegalaxy.eu/published/workflow?id=579ff83177c5ee09, https://usegalaxy.eu/published/workflow?id=5826e573b6f93762, https://usegalaxy.eu/published/workflow?id=6158c3b5fc12044e, https://usegalaxy.eu/published/workflow?id=628062a8cf93261f, https://usegalaxy.eu/published/workflow?id=62c47e3c9d4f3aa3, https://usegalaxy.eu/published/workflow?id=667bac8d7453e5f1, https://usegalaxy.eu/published/workflow?id=69be0fb8276753ec, https://usegalaxy.eu/published/workflow?id=6d87481be47902e1, https://usegalaxy.eu/published/workflow?id=723e718f37e9ab91, https://usegalaxy.eu/published/workflow?id=7aa32aba3fde0708, https://usegalaxy.eu/published/workflow?id=7e48134082dab0a3, https://usegalaxy.eu/published/workflow?id=7ecd92cb382d8168, https://usegalaxy.eu/published/workflow?id=842e0ea7b1eb56af, https://usegalaxy.eu/published/workflow?id=8b2f53745e720d0f, https://usegalaxy.eu/published/workflow?id=8deb08d4f228e198, https://usegalaxy.eu/published/workflow?id=8f3ce55d44d9f369, https://usegalaxy.eu/published/workflow?id=9219557de92e0203, https://usegalaxy.eu/published/workflow?id=94c3d329c31c712f, https://usegalaxy.eu/published/workflow?id=968f0ac2617aa524, https://usegalaxy.eu/published/workflow?id=97312d273b6e8bd9, https://usegalaxy.eu/published/workflow?id=98bfad0c684011e9, https://usegalaxy.eu/published/workflow?id=9b9e1e28f3683f92, https://usegalaxy.eu/published/workflow?id=9ddb703e1db13504, https://usegalaxy.eu/published/workflow?id=a337bfb2eb1e583f, https://usegalaxy.eu/published/workflow?id=a847773b563b2328, https://usegalaxy.eu/published/workflow?id=a84bac86ec183d46, https://usegalaxy.eu/published/workflow?id=b2b46e71046b1999, https://usegalaxy.eu/published/workflow?id=b7c2440621968526, https://usegalaxy.eu/published/workflow?id=b93333efdab316d8, https://usegalaxy.eu/published/workflow?id=c9ef2d2ce92e2dfb, https://usegalaxy.eu/published/workflow?id=cf8591391a17a914, https://usegalaxy.eu/published/workflow?id=d57d41e306241396, https://usegalaxy.eu/published/workflow?id=d67299c34e63f3d9, https://usegalaxy.eu/published/workflow?id=e532d98f4b368666, https://usegalaxy.eu/published/workflow?id=e8eb80ee09159bac, https://usegalaxy.eu/published/workflow?id=ea485dbabc76488d, https://usegalaxy.eu/published/workflow?id=eb5ab8bc82569eee, https://usegalaxy.eu/published/workflow?id=ecf48fa50af560a0, https://usegalaxy.eu/published/workflow?id=fba1671d835b6dd3, https://usegalaxy.eu/published/workflow?id=fca458178b3c794a, https://usegalaxy.eu/published/workflow?id=fde21b5f5c169114, https://usegalaxy.eu/published/workflow?id=fe43cf59e48bf556, https://usegalaxy.org.au/published/workflow?id=02c74095a7128c9d, https://usegalaxy.org.au/published/workflow?id=1ad4c47cee851dda, https://usegalaxy.org.au/published/workflow?id=243c67fa4312855e, https://usegalaxy.org.au/published/workflow?id=2e29b21cdec7d0cc, https://usegalaxy.org.au/published/workflow?id=30430b75d05f54eb, https://usegalaxy.org.au/published/workflow?id=39c724282ee008e3, https://usegalaxy.org.au/published/workflow?id=4023bca282ca9315, https://usegalaxy.org.au/published/workflow?id=434127690544d0e9, https://usegalaxy.org.au/published/workflow?id=478c79365fc9677f, https://usegalaxy.org.au/published/workflow?id=533dbb3242ee4255, https://usegalaxy.org.au/published/workflow?id=5b32e2f0d390a4ba, https://usegalaxy.org.au/published/workflow?id=5cd804644a34c8fd, https://usegalaxy.org.au/published/workflow?id=7fa13ccbf044edc5, https://usegalaxy.org.au/published/workflow?id=83e3ceceb1a92493, https://usegalaxy.org.au/published/workflow?id=874492eb776ba813, https://usegalaxy.org.au/published/workflow?id=8a40059343cf4b87, https://usegalaxy.org.au/published/workflow?id=8b6739a000780d99, https://usegalaxy.org.au/published/workflow?id=8d47811c6154d347, https://usegalaxy.org.au/published/workflow?id=8f7d5ebead46a6d0, https://usegalaxy.org.au/published/workflow?id=92fcdd490831c6c5, https://usegalaxy.org.au/published/workflow?id=9b75924c483b5f6b, https://usegalaxy.org.au/published/workflow?id=aee5b5645c51cac3, https://usegalaxy.org.au/published/workflow?id=b6bad1f167257248, https://usegalaxy.org.au/published/workflow?id=b7aa22291322e505, https://usegalaxy.org.au/published/workflow?id=d06665e4bc7fff6d, https://usegalaxy.org.au/published/workflow?id=d832905fbaf2ca31, https://usegalaxy.org.au/published/workflow?id=d957bfeb3cd03db0, https://usegalaxy.org.au/published/workflow?id=df11f09771e73e04, https://usegalaxy.org.au/published/workflow?id=ee7a1615f187391d, https://usegalaxy.org.au/published/workflow?id=f01be6a7685ac476, https://usegalaxy.org.au/published/workflow?id=f25a05070bf97ded, https://usegalaxy.org.au/published/workflow?id=fb0986a952c35e0a, https://usegalaxy.org.au/published/workflow?id=fc664a96d8099652, https://usegalaxy.org/published/workflow?id=0602c14704dbe1ff, https://usegalaxy.org/published/workflow?id=0e30324072570abb, https://usegalaxy.org/published/workflow?id=4029a0c8fa23d375, https://usegalaxy.org/published/workflow?id=4161cfd67ed94b5d, https://usegalaxy.org/published/workflow?id=4d1279007d0137fa, https://usegalaxy.org/published/workflow?id=4e1ae78405034ad3, https://usegalaxy.org/published/workflow?id=51c485af11d90700, https://usegalaxy.org/published/workflow?id=524602abe59b18f7, https://usegalaxy.org/published/workflow?id=547f86db467bf620, https://usegalaxy.org/published/workflow?id=5cd56232e873beab, https://usegalaxy.org/published/workflow?id=7a33bc2d0970b502, https://usegalaxy.org/published/workflow?id=8111bb9bb26bb665, https://usegalaxy.org/published/workflow?id=9ac1e4efe310b3b3, https://usegalaxy.org/published/workflow?id=9e5c5ddb60a24889, https://usegalaxy.org/published/workflow?id=a67afbea4b2eb26b, https://usegalaxy.org/published/workflow?id=c30f6ca171896908, https://usegalaxy.org/published/workflow?id=c454c930ccfb0d3f, https://usegalaxy.org/published/workflow?id=c65bec6c332bf740, https://usegalaxy.org/published/workflow?id=c8d74054c1820087, https://usegalaxy.org/published/workflow?id=db08887d7d6dc147, https://usegalaxy.org/published/workflow?id=e745c45651d829b8, https://usegalaxy.org/published/workflow?id=f4d623a19b32370e, https://usegalaxy.org/published/workflow?id=f926e70bee242785, https://usegalaxy.org/published/workflow?id=fb01e1a49793c8be, https://workflowhub.eu/workflows/1043?version=9, https://workflowhub.eu/workflows/1352?version=3, https://workflowhub.eu/workflows/1390?version=2, https://workflowhub.eu/workflows/1580?version=1, https://workflowhub.eu/workflows/1595?version=1, https://workflowhub.eu/workflows/1598?version=1, https://workflowhub.eu/workflows/1602?version=1, https://workflowhub.eu/workflows/1607?version=1, https://workflowhub.eu/workflows/1613?version=1, https://workflowhub.eu/workflows/1621?version=1, https://workflowhub.eu/workflows/1622?version=1, https://workflowhub.eu/workflows/1634?version=1, https://workflowhub.eu/workflows/1646?version=1, https://workflowhub.eu/workflows/225?version=1, https://workflowhub.eu/workflows/229?version=1, https://workflowhub.eu/workflows/403?version=9, https://workflowhub.eu/workflows/750?version=2, https://workflowhub.eu/workflows/794?version=2 |
assembly/assembly-quality-control, assembly/general-introduction, assembly/hifi-assembly, assembly/largegenome, assembly/metagenomics-assembly, assembly/mrsa-illumina, assembly/mrsa-nanopore, assembly/unicycler-assembly, assembly/vgp_genome_assembly, assembly/vgp_workflow_training, microbiome/metagenomics-assembly |
|
query_impc |
query_impc |
Contains a tool to query the IMPC database. |
2023-10-11 |
https://github.com/INFRAFRONTIERDIB/tools-iuc/tree/query_impc/tools/query_impc |
0.9.0 |
requests |
|
To update |
Convert Formats, Web Services |
|
|
|
|
iuc |
https://github.com/INFRAFRONTIERDIB/tools-iuc/tree/query_impc/tools/query_impc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/query_impc |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
4 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
2 |
2 |
|
|
|
query_tabular |
filter_tabular, query_tabular, sqlite_to_tabular |
Loads tabular files into a SQLite DB to perform a SQL query producing a tabular output |
2017-07-14 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular |
3.3.1 |
python |
|
To update |
Text Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/query_tabular |
|
|
|
|
3 |
3 |
3 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
2 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
3 |
3 |
3 |
0 |
706 |
713 |
144055 |
149950 |
796 |
796 |
12015 |
12015 |
130 |
130 |
6783 |
6783 |
5 |
5 |
6 |
6 |
168754 |
162859 |
1644 |
1637 |
https://dev.workflowhub.eu/workflows/1036?version=1, https://dev.workflowhub.eu/workflows/1041?version=1, https://dev.workflowhub.eu/workflows/1042?version=1, https://dev.workflowhub.eu/workflows/1043?version=1, https://dev.workflowhub.eu/workflows/1099?version=1, https://dev.workflowhub.eu/workflows/1116?version=1, https://dev.workflowhub.eu/workflows/1151?version=2, https://dev.workflowhub.eu/workflows/1159?version=2, https://dev.workflowhub.eu/workflows/1177?version=2, https://dev.workflowhub.eu/workflows/1201?version=2, https://dev.workflowhub.eu/workflows/1236?version=2, https://dev.workflowhub.eu/workflows/1291?version=2, https://dev.workflowhub.eu/workflows/1338?version=1, https://dev.workflowhub.eu/workflows/1351?version=1, https://dev.workflowhub.eu/workflows/1354?version=1, https://dev.workflowhub.eu/workflows/1363?version=1, https://dev.workflowhub.eu/workflows/1369?version=1, https://dev.workflowhub.eu/workflows/1372?version=1, https://dev.workflowhub.eu/workflows/1381?version=1, https://dev.workflowhub.eu/workflows/1382?version=1, https://dev.workflowhub.eu/workflows/1383?version=1, https://dev.workflowhub.eu/workflows/1384?version=1, https://dev.workflowhub.eu/workflows/1385?version=2, https://dev.workflowhub.eu/workflows/1386?version=1, https://dev.workflowhub.eu/workflows/1387?version=1, https://dev.workflowhub.eu/workflows/1398?version=1, https://usegalaxy.eu/published/workflow?id=00e246ea459b0991, https://usegalaxy.eu/published/workflow?id=02700454f57eb556, https://usegalaxy.eu/published/workflow?id=03e52c8c71710cae, https://usegalaxy.eu/published/workflow?id=08bbf87ab2a2230e, https://usegalaxy.eu/published/workflow?id=09194b5a549f7979, https://usegalaxy.eu/published/workflow?id=0aee7ffa5f6384bd, https://usegalaxy.eu/published/workflow?id=0e0be913c3e27022, https://usegalaxy.eu/published/workflow?id=1706bfa819bbfa89, https://usegalaxy.eu/published/workflow?id=17a1433d0b681d4a, https://usegalaxy.eu/published/workflow?id=1809fcaec264eac9, https://usegalaxy.eu/published/workflow?id=1829cf717650652e, https://usegalaxy.eu/published/workflow?id=229a955d29bd4064, https://usegalaxy.eu/published/workflow?id=25a209bda998412f, https://usegalaxy.eu/published/workflow?id=26c4882e320ed7b3, https://usegalaxy.eu/published/workflow?id=28af61ead68e0976, https://usegalaxy.eu/published/workflow?id=2a7e63d1cc583002, https://usegalaxy.eu/published/workflow?id=3081569659a45b9e, https://usegalaxy.eu/published/workflow?id=39afbf843b5513bf, https://usegalaxy.eu/published/workflow?id=3a178ff6884a5d6d, https://usegalaxy.eu/published/workflow?id=3a8150c81b90a3a7, https://usegalaxy.eu/published/workflow?id=3dcf09e75d707573, https://usegalaxy.eu/published/workflow?id=3e01a2c6d954ae6e, https://usegalaxy.eu/published/workflow?id=41d096891bada138, https://usegalaxy.eu/published/workflow?id=41df8c7821b5f2fc, https://usegalaxy.eu/published/workflow?id=41e9882300fa2386, https://usegalaxy.eu/published/workflow?id=437704898229dfb6, https://usegalaxy.eu/published/workflow?id=470b629d22b0fc51, https://usegalaxy.eu/published/workflow?id=4a39d38fde81e35d, https://usegalaxy.eu/published/workflow?id=4bd0827030df02a3, https://usegalaxy.eu/published/workflow?id=4c81726bde25c36a, https://usegalaxy.eu/published/workflow?id=50d85103f2275d38, https://usegalaxy.eu/published/workflow?id=52cb9bacc26b013e, https://usegalaxy.eu/published/workflow?id=5374daf356516a40, https://usegalaxy.eu/published/workflow?id=57d3109f32defa3b, https://usegalaxy.eu/published/workflow?id=58db3e1996a8f093, https://usegalaxy.eu/published/workflow?id=5e4774036aa20b80, https://usegalaxy.eu/published/workflow?id=5fa6d3989ea4c582, https://usegalaxy.eu/published/workflow?id=607ca3a9d45bd080, https://usegalaxy.eu/published/workflow?id=612dc5bdf388585f, https://usegalaxy.eu/published/workflow?id=6201ec86d380aef1, https://usegalaxy.eu/published/workflow?id=6306656ec10bd18f, https://usegalaxy.eu/published/workflow?id=66834f10c86362b9, https://usegalaxy.eu/published/workflow?id=6766bed39f614b7c, https://usegalaxy.eu/published/workflow?id=68967c922de149ae, https://usegalaxy.eu/published/workflow?id=6cb85fe1ad0c9f3b, https://usegalaxy.eu/published/workflow?id=6d3332794ceca465, https://usegalaxy.eu/published/workflow?id=6da171871d4f3fd5, https://usegalaxy.eu/published/workflow?id=6e5f0d05c91876c2, https://usegalaxy.eu/published/workflow?id=6e6cf59bfeb938bf, https://usegalaxy.eu/published/workflow?id=71816adecac46e74, https://usegalaxy.eu/published/workflow?id=73dc2384535bf6af, https://usegalaxy.eu/published/workflow?id=77f3132d1b879603, https://usegalaxy.eu/published/workflow?id=78e1769f1dcb797b, https://usegalaxy.eu/published/workflow?id=79eb28066236e836, https://usegalaxy.eu/published/workflow?id=7dd7908f4c8d722a, https://usegalaxy.eu/published/workflow?id=82b6871682f1659a, https://usegalaxy.eu/published/workflow?id=889f2782ad82bd69, https://usegalaxy.eu/published/workflow?id=8a85663218676b59, https://usegalaxy.eu/published/workflow?id=8af41219411062ad, https://usegalaxy.eu/published/workflow?id=8e997deae5a382c4, https://usegalaxy.eu/published/workflow?id=8ef3379dded2490a, https://usegalaxy.eu/published/workflow?id=8fc1ea9e94bc723d, https://usegalaxy.eu/published/workflow?id=912b81c444e35045, https://usegalaxy.eu/published/workflow?id=974cc681d07ec788, https://usegalaxy.eu/published/workflow?id=9a8b5e99ca9500e3, https://usegalaxy.eu/published/workflow?id=9b4e6c5f2c1babce, https://usegalaxy.eu/published/workflow?id=9ef76d764d9961b2, https://usegalaxy.eu/published/workflow?id=a2f36d4dd48d8ec2, https://usegalaxy.eu/published/workflow?id=a4d6b9dc6b396933, https://usegalaxy.eu/published/workflow?id=a657b412b37b971b, https://usegalaxy.eu/published/workflow?id=a7638e7f908fd90d, https://usegalaxy.eu/published/workflow?id=a824cfdee241177f, https://usegalaxy.eu/published/workflow?id=b06f5729d6d68794, https://usegalaxy.eu/published/workflow?id=b4ed2a3690da0196, https://usegalaxy.eu/published/workflow?id=b6bb29169160a713, https://usegalaxy.eu/published/workflow?id=b73fa5f8c0403454, https://usegalaxy.eu/published/workflow?id=b89cf3cb6a25c999, https://usegalaxy.eu/published/workflow?id=ba3a5d59b3879764, https://usegalaxy.eu/published/workflow?id=bdc7cfaac0db2eab, https://usegalaxy.eu/published/workflow?id=bfe26679d670bb5e, https://usegalaxy.eu/published/workflow?id=c02ff9e97ce796c6, https://usegalaxy.eu/published/workflow?id=c09159d7aad0f264, https://usegalaxy.eu/published/workflow?id=c0f225536e78a178, https://usegalaxy.eu/published/workflow?id=c3a11e1ac1aa8383, https://usegalaxy.eu/published/workflow?id=c4119ea7ffd29094, https://usegalaxy.eu/published/workflow?id=c5de0b794849e1b1, https://usegalaxy.eu/published/workflow?id=c6b6ba35e5b6500a, https://usegalaxy.eu/published/workflow?id=cd675ab32d3e7833, https://usegalaxy.eu/published/workflow?id=ce5c16ac23c4fbb1, https://usegalaxy.eu/published/workflow?id=cefc49c13ff73231, https://usegalaxy.eu/published/workflow?id=d0a809f0880d7ec0, https://usegalaxy.eu/published/workflow?id=d0e062aee910086a, https://usegalaxy.eu/published/workflow?id=d2a9d4eb5b3c72a2, https://usegalaxy.eu/published/workflow?id=d375fb9af8d46793, https://usegalaxy.eu/published/workflow?id=d5756e3ebfa285ef, https://usegalaxy.eu/published/workflow?id=d87fc6685e47d27d, https://usegalaxy.eu/published/workflow?id=d9e7a940b2d410bc, https://usegalaxy.eu/published/workflow?id=db270d0eb035609e, https://usegalaxy.eu/published/workflow?id=df926c5ab8d27192, https://usegalaxy.eu/published/workflow?id=e04be1ab5a16eb9f, https://usegalaxy.eu/published/workflow?id=e91def3fc9738ebb, https://usegalaxy.eu/published/workflow?id=eb54512829d8509c, https://usegalaxy.eu/published/workflow?id=edea08c943ff9c5e, https://usegalaxy.eu/published/workflow?id=f0bec337f9998289, https://usegalaxy.eu/published/workflow?id=f946efa49bd41a43, https://usegalaxy.eu/published/workflow?id=fc42cc9467c6ee8d, https://usegalaxy.eu/published/workflow?id=fdd60d4121673f62, https://usegalaxy.org.au/published/workflow?id=0dff588f31f1dfd6, https://usegalaxy.org.au/published/workflow?id=0ebaaecf61dfc921, https://usegalaxy.org.au/published/workflow?id=157e7614ae18849b, https://usegalaxy.org.au/published/workflow?id=1b9bfe7ce484fdc2, https://usegalaxy.org.au/published/workflow?id=2249ab6710f5e84d, https://usegalaxy.org.au/published/workflow?id=5cd804644a34c8fd, https://usegalaxy.org.au/published/workflow?id=65250d6b30d4bc7c, https://usegalaxy.org.au/published/workflow?id=75113a1b41904d2a, https://usegalaxy.org.au/published/workflow?id=762791e094457bf2, https://usegalaxy.org.au/published/workflow?id=7cd4fcc8e06ce4fd, https://usegalaxy.org.au/published/workflow?id=832a30759469d3fe, https://usegalaxy.org.au/published/workflow?id=85aede91db0122e4, https://usegalaxy.org.au/published/workflow?id=9281258aefd17c0c, https://usegalaxy.org.au/published/workflow?id=9365a7de314c9f85, https://usegalaxy.org.au/published/workflow?id=ba217a34d7e1b5ee, https://usegalaxy.org.au/published/workflow?id=c049ae8f729b2d7e, https://usegalaxy.org.au/published/workflow?id=cf5ab8fe4e2c0859, https://usegalaxy.org.au/published/workflow?id=d5a3fd1faa3f0a41, https://usegalaxy.org.au/published/workflow?id=e1fd89e7248b6661, https://usegalaxy.org.au/published/workflow?id=f9f685d6150e48c5, https://usegalaxy.org/published/workflow?id=1d925422fc6094a0, https://usegalaxy.org/published/workflow?id=336d74481d2f721a, https://usegalaxy.org/published/workflow?id=39810594e5c332d5, https://usegalaxy.org/published/workflow?id=42331381df05b956, https://usegalaxy.org/published/workflow?id=43c39bc86399188f, https://usegalaxy.org/published/workflow?id=6a3e47124e32e260, https://usegalaxy.org/published/workflow?id=82973143b28bb767, https://usegalaxy.org/published/workflow?id=8ecc114eb9097855, https://usegalaxy.org/published/workflow?id=b28789b6a0e1f5c9, https://usegalaxy.org/published/workflow?id=b76c55dafd44b305, https://usegalaxy.org/published/workflow?id=d0847ce8261eb922, https://usegalaxy.org/published/workflow?id=e336bca259abd474, https://usegalaxy.org/published/workflow?id=e3a30c0583183c1e, https://usegalaxy.org/published/workflow?id=e97da2da9e0290a7, https://workflowhub.eu/workflows/117?version=1, https://workflowhub.eu/workflows/1208?version=1, https://workflowhub.eu/workflows/1218?version=1, https://workflowhub.eu/workflows/1225?version=1, https://workflowhub.eu/workflows/1269?version=2, https://workflowhub.eu/workflows/1270?version=2, https://workflowhub.eu/workflows/1275?version=2, https://workflowhub.eu/workflows/1296?version=2, https://workflowhub.eu/workflows/1396?version=1, https://workflowhub.eu/workflows/1406?version=1, https://workflowhub.eu/workflows/1407?version=1, https://workflowhub.eu/workflows/1410?version=1, https://workflowhub.eu/workflows/1416?version=1, https://workflowhub.eu/workflows/1425?version=1, https://workflowhub.eu/workflows/1429?version=1, https://workflowhub.eu/workflows/1430?version=1, https://workflowhub.eu/workflows/1435?version=1, https://workflowhub.eu/workflows/1437?version=1, https://workflowhub.eu/workflows/1442?version=1, https://workflowhub.eu/workflows/1443?version=1, https://workflowhub.eu/workflows/1450?version=1, https://workflowhub.eu/workflows/1457?version=1, https://workflowhub.eu/workflows/1464?version=1, https://workflowhub.eu/workflows/1467?version=1, https://workflowhub.eu/workflows/1480?version=1, https://workflowhub.eu/workflows/1631?version=1, https://workflowhub.eu/workflows/1680?version=1, https://workflowhub.eu/workflows/1681?version=1, https://workflowhub.eu/workflows/1788?version=1, https://workflowhub.eu/workflows/1789?version=1, https://workflowhub.eu/workflows/1790?version=1, https://workflowhub.eu/workflows/1791?version=1, https://workflowhub.eu/workflows/1792?version=1, https://workflowhub.eu/workflows/1793?version=1, https://workflowhub.eu/workflows/1794?version=1, https://workflowhub.eu/workflows/403?version=9, https://workflowhub.eu/workflows/66?version=1, https://workflowhub.eu/workflows/67?version=1, https://workflowhub.eu/workflows/794?version=2 |
assembly/metagenomics-assembly, ecology/Ecoregionalization_tutorial, galaxy-interface/ncbi-sarf, microbiome/clinical-mp-2-discovery, microbiome/clinical-mp-3-verification, microbiome/metagenomics-assembly, proteomics/clinical-mp-2-discovery, proteomics/clinical-mp-3-verification, proteomics/metaproteomics, proteomics/metaquantome-data-creation, proteomics/neoantigen-fragpipe-discovery, proteomics/neoantigen-fusion-database-generation, proteomics/neoantigen-hla-binding-novel-peptides, proteomics/neoantigen-non-reference-database-generation, proteomics/neoantigen-peptide-verification, proteomics/neoantigen-predicting-hla-binding, proteomics/neoantigen-variant-annotation, proteomics/proteogenomics-dbcreation, proteomics/proteogenomics-dbsearch, proteomics/proteogenomics-novel-peptide-analysis, transcriptomics/rna-interactome |
|
quickmerge |
quickmerge |
Merge long-read and hybrid assemblies to increase contiguity |
2022-07-08 |
https://github.com/mahulchak/quickmerge |
0.3 |
quickmerge |
0.3 |
Up-to-date |
Assembly |
Genome assembly, Scaffolding, De-novo assembly, Genotyping |
Genome assembly, Scaffolding, De-novo assembly, Genotyping |
Structural variation, Sequence assembly, DNA polymorphism, Whole genome sequencing, Genotype and phenotype |
Structural variation, Sequence assembly, DNA polymorphism, Whole genome sequencing, Genotype and phenotype |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/quickmerge |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/quickmerge |
quickmerge |
quickmerge |
Quickmerge is a program that uses complementary information from genomes assembled with long reads in order to improve contiguity, and works with assemblies derived from both Pacific Biosciences or Oxford Nanopore. Quickmerge will even work with hybrid assemblies made by combining long reads and Illumina short reads. |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
quicktree |
quicktree |
neighbour-joining phylogenetic inference |
2024-11-21 |
https://github.com/khowe/quicktree |
2.5 |
quicktree |
2.5 |
Up-to-date |
Phylogenetics |
Phylogenetic inference (from molecular sequences) |
Phylogenetic inference (from molecular sequences) |
Phylogenetics |
Phylogenetics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/quicktree |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/quicktree |
quicktree |
QuickTree |
QuickTree is an efficient implementation of the Neighbor-Joining algorithm (PMID: 3447015), capable of reconstructing phylogenies from huge alignments in time less than the age of the universe. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 |
7 |
65 |
65 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
65 |
65 |
7 |
7 |
https://workflowhub.eu/workflows/1650?version=1 |
sequence-analysis/tapscan-streptophyte-algae |
|
raceid |
raceid_clustering, raceid_filtnormconf, raceid_inspectclusters, raceid_inspecttrajectory, raceid_trajectory |
RaceID3, StemID2, FateID - scRNA analysis |
2018-03-03 |
https://github.com/dgrun/RaceID3_StemID2_package/ |
0.2.3 |
r-raceid |
0.1.3 |
To update |
Single Cell, Transcriptomics |
Expression profile clustering, Expression analysis, Molecular dynamics |
Expression profile clustering, Expression analysis, Molecular dynamics |
Cell biology, Molecular interactions, pathways and networks, RNA-Seq, Gene expression |
Cell biology, Molecular interactions, pathways and networks, RNA-Seq, Gene expression |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/raceid |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/raceid |
RaceID |
RaceID |
Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data |
|
5 |
5 |
5 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
5 |
5 |
0 |
114 |
162 |
1935 |
4600 |
394 |
394 |
2954 |
2954 |
5 |
5 |
2428 |
2428 |
1 |
1 |
1 |
1 |
9983 |
7318 |
562 |
514 |
https://dev.workflowhub.eu/workflows/1205?version=1, https://dev.workflowhub.eu/workflows/1376?version=1, https://usegalaxy.eu/published/workflow?id=2f8d9fb85242eca7, https://usegalaxy.org.au/published/workflow?id=9dfa217eae285c30, https://workflowhub.eu/workflows/1547?version=1 |
single-cell/scrna-raceid |
|
ragtag |
ragtag |
Reference-guided scaffolding of draft genomes tool. |
2021-11-10 |
https://github.com/malonge/RagTag |
2.1.0 |
ragtag |
2.1.0 |
Up-to-date |
Assembly |
Genome assembly |
Genome assembly |
Sequence assembly |
Sequence assembly |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ragtag |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ragtag |
ragtag |
ragtag |
RagTag is a collection of software tools for scaffolding and improving modern genome assemblies. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
561 |
561 |
5401 |
5401 |
0 |
0 |
0 |
0 |
35 |
35 |
548 |
548 |
23 |
23 |
312 |
312 |
6261 |
6261 |
619 |
619 |
https://usegalaxy.org.au/published/workflow?id=7f37c5366bce5489 |
|
|
rapidnj |
rapidnj |
Galaxy wrapper for the RapidNJ tool |
2020-05-11 |
https://birc.au.dk/software/rapidnj/ |
2.3.2 |
rapidnj |
2.3.2 |
Up-to-date |
Phylogenetics |
Phylogenetic tree generation |
|
Phylogeny |
Phylogeny |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/rapidnj |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/rapidnj |
rapidnj |
RapidNJ |
A tool for fast canonical neighbor-joining tree construction. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
39 |
39 |
2929 |
2929 |
280 |
280 |
2040 |
2040 |
22 |
22 |
88 |
88 |
12 |
12 |
43 |
43 |
5100 |
5100 |
353 |
353 |
https://dev.workflowhub.eu/workflows/1173?version=2, https://usegalaxy.eu/published/workflow?id=86900be4282d4b1d, https://usegalaxy.eu/published/workflow?id=a2c46deea34d9d80, https://usegalaxy.org/published/workflow?id=005924662f68a480, https://usegalaxy.org/published/workflow?id=0596162a499b4074, https://usegalaxy.org/published/workflow?id=a46ad0b9240d1a13, https://usegalaxy.org/published/workflow?id=b0f85c802c1ea7f8, https://workflowhub.eu/workflows/1518?version=1 |
genome-annotation/gene-centric |
|
rasusa |
rasusa |
Randomly subsample sequencing reads to a specified coverage |
2024-02-16 |
https://github.com/mbhall88/rasusa |
2.0.0 |
rasusa |
2.1.1 |
To update |
Sequence Analysis |
Sequence assembly validation, Sequencing quality control |
Sequence assembly validation |
Genomics, Sequence analysis, Sequence assembly, Sequencing, RNA-Seq |
Genomics, Sequence analysis, Sequence assembly, RNA-Seq |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/rasusa |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/rasusa |
rasusa |
rasusa |
Rasusa: Randomly subsample sequencing reads to aspecified coverageProduces an unbiased subsample of your reads |
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
13 |
71 |
71 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
71 |
71 |
13 |
13 |
|
|
|
raven |
raven |
Raven is a de novo genome assembler for long uncorrected reads. |
2020-11-04 |
https://github.com/lbcb-sci/raven |
1.8.3 |
raven-assembler |
1.8.3 |
Up-to-date |
Assembly |
De-novo assembly, Genome assembly, Read pre-processing |
De-novo assembly, Genome assembly, Read pre-processing |
Sequence assembly, Whole genome sequencing, Genomics |
Sequence assembly, Whole genome sequencing, Genomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/raven |
raven |
Raven |
a de novo genome assembler for long reads.Raven is a de novo genome assembler for long uncorrected reads. |
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
494 |
494 |
10707 |
10707 |
0 |
0 |
0 |
0 |
209 |
209 |
12603 |
12603 |
20 |
20 |
192 |
192 |
23502 |
23502 |
723 |
723 |
|
|
|
raxml |
raxml |
RAxML - A Maximum Likelihood based phylogenetic inference |
2015-11-05 |
http://www.exelixis-lab.org/web/software/raxml/ |
8.2.12 |
raxml |
8.2.13 |
To update |
Phylogenetics |
Sequence analysis, Phylogenetic tree analysis |
Sequence analysis |
Phylogenetics, Sequence analysis |
Phylogenetics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/raxml |
raxml |
RAxML |
A tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1139 |
1139 |
13457 |
13457 |
759 |
759 |
10784 |
10800 |
740 |
933 |
5201 |
6560 |
14 |
14 |
222 |
222 |
31039 |
29664 |
2845 |
2652 |
https://dev.workflowhub.eu/workflows/1007?version=1, https://dev.workflowhub.eu/workflows/1300?version=2, https://usegalaxy.eu/published/workflow?id=470656ef317c9dd5, https://usegalaxy.eu/published/workflow?id=875b3ca170ac12a1, https://usegalaxy.org/published/workflow?id=7251c6e0dad8f927, https://usegalaxy.org/published/workflow?id=d4f0a7ccb09f1e55, https://workflowhub.eu/workflows/1577?version=1 |
evolution/mtb_phylogeny |
|
rcorrector |
rcorrector |
Rcorrector (RNA-seq error CORRECTOR) is a kmer-based error correction method for RNA-seq data. |
2018-05-02 |
https://github.com/mourisl/Rcorrector |
1.0.3+galaxy1 |
rcorrector |
1.0.7 |
To update |
Fastq Manipulation |
Sequencing error detection |
Sequencing error detection |
RNA, RNA-Seq, Sequencing |
RNA, RNA-Seq |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/rcorrector |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/rcorrector |
rcorrector |
Rcorrector |
This is a kmer-based error correction method for RNA-seq data. It can also be applied to other types of sequencing data where the read coverage is non-uniform, such as single-cell sequencing. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
64 |
64 |
779 |
779 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
779 |
779 |
64 |
64 |
|
|
|
read_it_and_keep |
read_it_and_keep |
Rapid decontamination of SARS-CoV-2 sequencing reads |
2022-01-28 |
https://github.com/GenomePathogenAnalysisService/read-it-and-keep |
0.2.2 |
read-it-and-keep |
0.3.0 |
To update |
Sequence Analysis |
Filtering, Genome alignment |
Filtering, Genome alignment |
Pathology, Genomics |
Pathology, Genomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/read-it-and-keep |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/read_it_and_keep |
read_it_and_keep |
read_it_and_keep |
Read-it-and-keep is a bioinformatics tool designed to filter and extract sequencing reads according to user-defined criteria, such as the presence of specific motifs or coverage of regions of interest. This type of filtering can be particularly useful for targeted analyses, where only relevant sequences are retained for further study, optimising computing and storage resources. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
81 |
81 |
3777 |
3777 |
7 |
7 |
8 |
8 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3785 |
3785 |
88 |
88 |
https://usegalaxy.eu/published/workflow?id=3fb550d7c2bc390a, https://usegalaxy.eu/published/workflow?id=4a764275d4bf9f31, https://usegalaxy.eu/published/workflow?id=629e57958afed44c, https://usegalaxy.eu/published/workflow?id=d88145e7475e0b7b, https://workflowhub.eu/workflows/519?version=1, https://workflowhub.eu/workflows/521?version=1 |
|
|
recentrifuge |
recentrifuge |
"With Recentrifuge, researchers can analyze results from taxonomic classifiers using interactive charts with emphasis on the confidence level of the classifications.In addition to contamination-subtracted samples.Recentrifuge provides shared and exclusive taxa per sample,thus enabling robust contamination removal and comparative analysis in environmental and clinical metagenomics." |
2022-05-04 |
https://github.com/khyox/recentrifuge |
1.16.1 |
recentrifuge |
1.16.1 |
Up-to-date |
Metagenomics |
Taxonomic classification, Expression analysis, Cross-assembly |
Taxonomic classification, Expression analysis, Cross-assembly |
Metagenomics, Microbial ecology, Metagenomic sequencing |
Metagenomics, Microbial ecology, Metagenomic sequencing |
iuc |
https://github.com/galaxyproject/tools-iuc/blob/master/tools/recentrifuge |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/recentrifuge |
Recentrifuge |
Recentrifuge |
Robust comparative analysis and contamination removal for metagenomics. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
187 |
187 |
792 |
792 |
100 |
100 |
259 |
259 |
23 |
23 |
52 |
52 |
20 |
20 |
1374 |
1374 |
2477 |
2477 |
330 |
330 |
https://dev.workflowhub.eu/workflows/1217?version=2, https://dev.workflowhub.eu/workflows/1344?version=1, https://usegalaxy.eu/published/workflow?id=0a82eb8b44d9d502, https://usegalaxy.eu/published/workflow?id=0abd32dbc5207b88, https://usegalaxy.eu/published/workflow?id=0c47571d20535426, https://usegalaxy.eu/published/workflow?id=2fa2f67603772413, https://usegalaxy.eu/published/workflow?id=47e14222073e7192, https://usegalaxy.eu/published/workflow?id=884a4415b669690c, https://usegalaxy.eu/published/workflow?id=aafcfcb585c5ca75, https://usegalaxy.eu/published/workflow?id=bb63b5bb983fd49c, https://usegalaxy.eu/published/workflow?id=bdc7cfaac0db2eab, https://usegalaxy.eu/published/workflow?id=c09159d7aad0f264, https://usegalaxy.eu/published/workflow?id=c14d2e8b3c191bc4, https://usegalaxy.eu/published/workflow?id=c930a54a30dcc7e3, https://usegalaxy.eu/published/workflow?id=e69b555faa6bb962, https://usegalaxy.eu/published/workflow?id=ebb131f2a6172081, https://usegalaxy.fr/published/workflow?id=3d3b40398d1cd1ae, https://usegalaxy.org/published/workflow?id=1be5c982c2d36a6c, https://usegalaxy.org/published/workflow?id=2a782ad24271f570, https://usegalaxy.org/published/workflow?id=323c651ca583c9e5, https://usegalaxy.org/published/workflow?id=4f698eaeef30e364, https://usegalaxy.org/published/workflow?id=623fc80c7f91a33a, https://usegalaxy.org/published/workflow?id=9f68718f025bed30, https://usegalaxy.org/published/workflow?id=b6a795834009ce06, https://usegalaxy.org/published/workflow?id=de9bf4c1024f8d53, https://usegalaxy.org/published/workflow?id=dfd73857c0eb2a21, https://usegalaxy.org/published/workflow?id=f378960ee55f567e, https://workflowhub.eu/workflows/1052?version=11, https://workflowhub.eu/workflows/1644?version=1, https://workflowhub.eu/workflows/1674?version=1 |
ecology/bacterial-isolate-species-contamination-checking, sequence-analysis/quality-contamination-control |
|
red |
red |
Red (REpeat Detector) |
2022-09-14 |
https://github.com/BioinformaticsToolsmith/Red |
2018.09.10 |
red |
2018.09.10 |
Up-to-date |
Sequence Analysis |
RNA-Seq analysis, Editing |
RNA-Seq analysis, Editing |
RNA, Sequencing, Data visualisation |
RNA, Sequencing, Data visualisation |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/red |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/red |
red |
RED |
This is a program to detect and visualize RNA editing events at genomic scale using next-generation sequencing data. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
262 |
262 |
1008 |
1008 |
230 |
230 |
478 |
478 |
73 |
73 |
294 |
294 |
44 |
44 |
147 |
147 |
1927 |
1927 |
609 |
609 |
https://dev.workflowhub.eu/workflows/1198?version=1, https://usegalaxy.eu/published/workflow?id=3d604dad4f1f5b3d, https://workflowhub.eu/workflows/1538?version=1, https://workflowhub.eu/workflows/753?version=1 |
genome-annotation/repeatmasker |
|
repeat_masker |
repeatmasker_wrapper |
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences. |
2018-04-21 |
http://www.repeatmasker.org/ |
4.1.5 |
repeatmasker |
4.2.0 |
To update |
Sequence Analysis |
Genome annotation |
Genome annotation |
Sequence analysis, Sequence composition, complexity and repeats |
Sequence composition, complexity and repeats |
bgruening |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmasker |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/repeatmasker |
repeatmasker |
RepeatMasker |
A program that screens DNA sequences for interspersed repeats and low complexity DNA sequences. The output of the program is a detailed annotation of the repeats that are present in the query sequence as well as a modified version of the query sequence in which all the annotated repeats have been masked (default: replaced by Ns). |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1028 |
1029 |
7954 |
7965 |
993 |
993 |
9105 |
9105 |
352 |
352 |
3810 |
3810 |
85 |
85 |
518 |
518 |
21398 |
21387 |
2459 |
2458 |
https://dev.workflowhub.eu/workflows/1198?version=1, https://dev.workflowhub.eu/workflows/1264?version=2, https://usegalaxy.eu/published/workflow?id=09c534f738426a6d, https://usegalaxy.eu/published/workflow?id=1ce406de61de8492, https://usegalaxy.eu/published/workflow?id=2880a32a52d27743, https://usegalaxy.eu/published/workflow?id=2e93613c688ea52e, https://usegalaxy.eu/published/workflow?id=309969a261189b5f, https://usegalaxy.eu/published/workflow?id=327beb1edda305ff, https://usegalaxy.eu/published/workflow?id=38f12705279b5dfa, https://usegalaxy.eu/published/workflow?id=3cf3dd9727b7ac92, https://usegalaxy.eu/published/workflow?id=4077e77b6af919c4, https://usegalaxy.eu/published/workflow?id=5f29105e842716db, https://usegalaxy.eu/published/workflow?id=aada0111f835ce49, https://usegalaxy.eu/published/workflow?id=cc2bc81352d2e2cd, https://usegalaxy.eu/published/workflow?id=efb58bba65393347, https://usegalaxy.fr/published/workflow?id=ae05ff8487f58fd6, https://usegalaxy.org.au/published/workflow?id=a71349ba0bff403a, https://usegalaxy.org.au/published/workflow?id=a9068ea858222e2b, https://usegalaxy.org.au/published/workflow?id=ffb1117077f68a9f, https://usegalaxy.org/published/workflow?id=effc17e170263ae6, https://usegalaxy.org/published/workflow?id=f2f633d2b02b6050, https://usegalaxy.org/published/workflow?id=fb8b997f516288e1, https://workflowhub.eu/workflows/1538?version=1, https://workflowhub.eu/workflows/1656?version=1, https://workflowhub.eu/workflows/358?version=1, https://workflowhub.eu/workflows/575?version=1, https://workflowhub.eu/workflows/753?version=1, https://workflowhub.eu/workflows/875?version=3 |
ecology/phylogeny-data-prep, genome-annotation/repeatmasker |
|
repeatmodeler |
repeatmodeler |
RepeatModeler - Model repetitive DNA |
2021-08-26 |
https://www.repeatmasker.org/RepeatModeler/ |
2.0.5 |
|
|
To update |
Genome annotation |
Repeat sequence detection |
Repeat sequence detection |
Sequence composition, complexity and repeats, Sequence composition, complexity and repeats |
Sequence composition, complexity and repeats, Sequence composition, complexity and repeats |
csbl |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmodeler |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/repeatmodeler |
repeatmodeler |
RepeatModeler |
De-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo repeat finding programs ( RECON and RepeatScout ) which employ complementary computational methods for identifying repeat element boundaries and family relationships from sequence data. RepeatModeler assists in automating the runs of RECON and RepeatScout given a genomic database and uses the output to build, refine and classify consensus models of putative interspersed repeats. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
532 |
532 |
8421 |
8421 |
297 |
297 |
1914 |
1914 |
199 |
199 |
8739 |
8739 |
23 |
23 |
249 |
249 |
19323 |
19323 |
1051 |
1051 |
https://usegalaxy.eu/published/workflow?id=09c534f738426a6d, https://usegalaxy.eu/published/workflow?id=327beb1edda305ff, https://usegalaxy.eu/published/workflow?id=4077e77b6af919c4, https://usegalaxy.fr/published/workflow?id=ae05ff8487f58fd6, https://usegalaxy.org.au/published/workflow?id=a71349ba0bff403a, https://usegalaxy.org.au/published/workflow?id=a9068ea858222e2b, https://usegalaxy.org.au/published/workflow?id=ffb1117077f68a9f, https://usegalaxy.org/published/workflow?id=effc17e170263ae6, https://workflowhub.eu/workflows/575?version=1, https://workflowhub.eu/workflows/875?version=3 |
genome-annotation/repeatmasker |
|
repmatch_gff3 |
repmatch_gff3 |
Contains a tool that matches corresponding peak-pair midpoints from separate datasets based onuser-defined criteria. |
2015-12-18 |
|
|
matplotlib |
|
To update |
ChIP-seq |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/repmatch_gff3 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/repmatch_gff3 |
|
|
|
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
116 |
220 |
354 |
722 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
722 |
354 |
220 |
116 |
|
|
|
reshape2 |
cast, melt |
Flexibly restructure and aggregate data using just the two functions melt and dcast |
2017-05-26 |
https://cran.r-project.org/web/packages/reshape2/index.html |
1.4.2 |
r-reshape2 |
|
To update |
Text Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/reshape2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/reshape2 |
|
|
|
|
2 |
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
90 |
94 |
3510 |
3621 |
123 |
123 |
552 |
553 |
0 |
0 |
0 |
0 |
2 |
2 |
5 |
5 |
4179 |
4067 |
219 |
215 |
https://usegalaxy.eu/published/workflow?id=2ebf65efe8ca4a7f, https://usegalaxy.org/published/workflow?id=173ecc0c88090d0e, https://usegalaxy.org/published/workflow?id=734e08331f8f34b7, https://usegalaxy.org/published/workflow?id=b094b6e1e7d48416, https://usegalaxy.org/published/workflow?id=ddb737f2ad0589e8, https://workflowhub.eu/workflows/1189?version=2 |
|
|
resize_coordinate_window |
resize_coordinate_window |
Contains a tool that modifies the start and stop coordinates of GFF data, expanding the coordinate windowby a specified size. |
2016-01-13 |
|
1.0.2 |
python |
|
To update |
Genomic Interval Operations |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/resize_coordinate_window |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/resize_coordinate_window |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
7 |
9 |
58 |
86 |
23 |
58 |
89 |
217 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
303 |
147 |
67 |
30 |
https://usegalaxy.eu/published/workflow?id=6bce1d419a179c50, https://usegalaxy.org/published/workflow?id=7643e66a9b4e9c11 |
|
|
revoluzer |
revoluzer_crex, revoluzer_distmat |
revoluzer wrappers |
2024-03-19 |
https://gitlab.com/Bernt/revoluzer/ |
0.1.8 |
revoluzer |
0.1.8 |
Up-to-date |
Phylogenetics |
Structural variation detection |
Structural variation detection |
Molecular evolution, Phylogeny |
Molecular evolution, Phylogeny |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/revoluzer |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/revoluzer |
revoluzer |
revoluzer |
Various tools for genome rearrangement analysis. CREx, TreeREx, etc |
|
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
48 |
48 |
3046 |
3046 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3046 |
3046 |
48 |
48 |
|
|
|
rgcca |
rgcca |
multi-block analysis |
2020-09-02 |
https://github.com/rgcca-factory/RGCCA |
3.0.2 |
rgccacmd |
3.0.3 |
To update |
Statistics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/rgcca |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
7 |
7 |
46 |
46 |
36 |
36 |
85 |
85 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
131 |
131 |
43 |
43 |
|
|
|
rgrnastar |
rna_star, rna_starsolo |
RNA STAR is an ultra fast universal RNA and scRNA-seq aligner and mapper |
2015-05-18 |
https://github.com/alexdobin/STAR |
2.7.11b |
star |
2.7.11b |
Up-to-date |
Next Gen Mappers, Transcriptomics, Single Cell |
Sequence alignment |
Sequence alignment |
RNA-Seq, Transcriptomics |
RNA-Seq, Transcriptomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/rgrnastar |
star |
STAR |
Ultrafast universal RNA-seq data aligner |
|
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
10507 |
11573 |
459789 |
504479 |
15644 |
20022 |
360596 |
455052 |
1375 |
1505 |
53075 |
57044 |
919 |
919 |
9772 |
9772 |
1026347 |
883232 |
34019 |
28445 |
https://dev.workflowhub.eu/workflows/1022?version=1, https://dev.workflowhub.eu/workflows/1202?version=1, https://dev.workflowhub.eu/workflows/1214?version=1, https://dev.workflowhub.eu/workflows/1220?version=3, https://dev.workflowhub.eu/workflows/1285?version=2, https://dev.workflowhub.eu/workflows/1324?version=3, https://dev.workflowhub.eu/workflows/1329?version=5, https://dev.workflowhub.eu/workflows/1383?version=1, https://usegalaxy.cz/published/workflow?id=932f4901960a595a, https://usegalaxy.eu/published/workflow?id=0229f3f3835c2d53, https://usegalaxy.eu/published/workflow?id=06fe33c4420906bf, https://usegalaxy.eu/published/workflow?id=08cfb9b21c1ec808, https://usegalaxy.eu/published/workflow?id=0a0b5aff6bd9689d, https://usegalaxy.eu/published/workflow?id=0c619b25c1394a09, https://usegalaxy.eu/published/workflow?id=0d6bed63a2e4c3d6, https://usegalaxy.eu/published/workflow?id=0eb137cd936bbfe0, https://usegalaxy.eu/published/workflow?id=0f563f176bb245af, https://usegalaxy.eu/published/workflow?id=0fa523529c4f73cf, https://usegalaxy.eu/published/workflow?id=153ba1581743d31f, https://usegalaxy.eu/published/workflow?id=1f9a9a7998ef5ab3, https://usegalaxy.eu/published/workflow?id=20ada53472782c9b, https://usegalaxy.eu/published/workflow?id=23821870734575e9, https://usegalaxy.eu/published/workflow?id=249c5d6698c8b98c, https://usegalaxy.eu/published/workflow?id=24ddd188da35b061, https://usegalaxy.eu/published/workflow?id=250e6058f160825f, https://usegalaxy.eu/published/workflow?id=2d08a73dd8ff99e9, https://usegalaxy.eu/published/workflow?id=3403d5a8a71e0c3c, https://usegalaxy.eu/published/workflow?id=406e6ef0dfb38628, https://usegalaxy.eu/published/workflow?id=409336bf210033a2, https://usegalaxy.eu/published/workflow?id=47a0407867a90f95, https://usegalaxy.eu/published/workflow?id=48071c1720b2fd8d, https://usegalaxy.eu/published/workflow?id=49073a24429d93d6, https://usegalaxy.eu/published/workflow?id=4e215c9b50650d5d, https://usegalaxy.eu/published/workflow?id=6514e610c79df72c, https://usegalaxy.eu/published/workflow?id=6a6e2c2335051fb5, https://usegalaxy.eu/published/workflow?id=6ebd09100fc98878, https://usegalaxy.eu/published/workflow?id=7117dbcbd5d12de5, https://usegalaxy.eu/published/workflow?id=7136ce9f18c74853, https://usegalaxy.eu/published/workflow?id=7d22eea4278570e8, https://usegalaxy.eu/published/workflow?id=86e2e2faa2e0bd46, https://usegalaxy.eu/published/workflow?id=873e6ac4699ed7f6, https://usegalaxy.eu/published/workflow?id=87fea062a9646a31, https://usegalaxy.eu/published/workflow?id=8fb156020285e049, https://usegalaxy.eu/published/workflow?id=90a32c95b60f5221, https://usegalaxy.eu/published/workflow?id=94bbf8fa7c1f030d, https://usegalaxy.eu/published/workflow?id=96c61a584cb2e5e9, https://usegalaxy.eu/published/workflow?id=985044b4b2c51425, https://usegalaxy.eu/published/workflow?id=9a52516ec0b539ea, https://usegalaxy.eu/published/workflow?id=9b025479fade745d, https://usegalaxy.eu/published/workflow?id=9c7a218993788493, https://usegalaxy.eu/published/workflow?id=9da26c5131603b9f, https://usegalaxy.eu/published/workflow?id=9e03cf8cd5e5de08, https://usegalaxy.eu/published/workflow?id=a1cfb476e849fce3, https://usegalaxy.eu/published/workflow?id=a28c207730e7e13d, https://usegalaxy.eu/published/workflow?id=a2d4221ad117c378, https://usegalaxy.eu/published/workflow?id=a3cb75fd31ba0689, https://usegalaxy.eu/published/workflow?id=a3da32b6b45da639, https://usegalaxy.eu/published/workflow?id=a461ea397418f3aa, https://usegalaxy.eu/published/workflow?id=af7c349497a75314, https://usegalaxy.eu/published/workflow?id=aff44f1665a14e23, https://usegalaxy.eu/published/workflow?id=b26fee38f6f796d8, https://usegalaxy.eu/published/workflow?id=b426e137396acb14, https://usegalaxy.eu/published/workflow?id=b5627201bb4f6943, https://usegalaxy.eu/published/workflow?id=b619339f4e1c6fdf, https://usegalaxy.eu/published/workflow?id=b7a3cbcd32734e8b, https://usegalaxy.eu/published/workflow?id=bace9aebab9d4ce3, https://usegalaxy.eu/published/workflow?id=be3d1d7d4afd96b1, https://usegalaxy.eu/published/workflow?id=c2d814f2182c0082, https://usegalaxy.eu/published/workflow?id=c4fa05e209a2f082, https://usegalaxy.eu/published/workflow?id=c5e6047b3b256b06, https://usegalaxy.eu/published/workflow?id=c64b219b4031fabd, https://usegalaxy.eu/published/workflow?id=c6b22fc33b569c8f, https://usegalaxy.eu/published/workflow?id=c98a14fcf5998159, https://usegalaxy.eu/published/workflow?id=ca9d3233b0912765, https://usegalaxy.eu/published/workflow?id=cc37667c2d1f9056, https://usegalaxy.eu/published/workflow?id=ccef778cfd9024d1, https://usegalaxy.eu/published/workflow?id=d0a809f0880d7ec0, https://usegalaxy.eu/published/workflow?id=d3494c6124f820b2, https://usegalaxy.eu/published/workflow?id=d3edc3f0659a5e5b, https://usegalaxy.eu/published/workflow?id=d4b3da4cc5a50044, https://usegalaxy.eu/published/workflow?id=d6809603f46de1b3, https://usegalaxy.eu/published/workflow?id=d79309343e2a5d62, https://usegalaxy.eu/published/workflow?id=deec04097a871646, https://usegalaxy.eu/published/workflow?id=e7494f29c8672f34, https://usegalaxy.eu/published/workflow?id=e94e307375a92c94, https://usegalaxy.eu/published/workflow?id=ead0f264798f9418, https://usegalaxy.eu/published/workflow?id=ef1d11b79a2e1727, https://usegalaxy.eu/published/workflow?id=f5be5bcf9b9f171c, https://usegalaxy.eu/published/workflow?id=f841e1207611f28f, https://usegalaxy.eu/published/workflow?id=fa53b172def3fe75, https://usegalaxy.eu/published/workflow?id=fa960b78dfc0c2f8, https://usegalaxy.eu/published/workflow?id=fd61d070d9744f95, https://usegalaxy.fr/published/workflow?id=e266db902aa1b0e8, https://usegalaxy.org.au/published/workflow?id=0458ecd2761307d1, https://usegalaxy.org.au/published/workflow?id=0dff588f31f1dfd6, https://usegalaxy.org.au/published/workflow?id=13ce18408ee7acc9, https://usegalaxy.org.au/published/workflow?id=16f4846b4d6bc155, https://usegalaxy.org.au/published/workflow?id=1a107e6611fb9c15, https://usegalaxy.org.au/published/workflow?id=1ad81f95ace878ea, https://usegalaxy.org.au/published/workflow?id=281ea78467e73147, https://usegalaxy.org.au/published/workflow?id=2cef9a1633e0a067, https://usegalaxy.org.au/published/workflow?id=3fd10af90a07f771, https://usegalaxy.org.au/published/workflow?id=41b115a9be4b6002, https://usegalaxy.org.au/published/workflow?id=4e161a8f5098cc49, https://usegalaxy.org.au/published/workflow?id=56bda8e4b0018e03, https://usegalaxy.org.au/published/workflow?id=5aff01d0b5fabd84, https://usegalaxy.org.au/published/workflow?id=5cd9b9338e75f254, https://usegalaxy.org.au/published/workflow?id=644d8e4c78df8e36, https://usegalaxy.org.au/published/workflow?id=65250d6b30d4bc7c, https://usegalaxy.org.au/published/workflow?id=6e1e24f9e0326930, https://usegalaxy.org.au/published/workflow?id=6f0801fecbba5d3f, https://usegalaxy.org.au/published/workflow?id=71bad95f72c9f30d, https://usegalaxy.org.au/published/workflow?id=738350fc2ca69c0b, https://usegalaxy.org.au/published/workflow?id=749d8f2d26e0a111, https://usegalaxy.org.au/published/workflow?id=75113a1b41904d2a, https://usegalaxy.org.au/published/workflow?id=7ad277dd448e57b3, https://usegalaxy.org.au/published/workflow?id=7ae06a27188b9438, https://usegalaxy.org.au/published/workflow?id=7becafd394472dfb, https://usegalaxy.org.au/published/workflow?id=7c22d726e1716f4b, https://usegalaxy.org.au/published/workflow?id=85aede91db0122e4, https://usegalaxy.org.au/published/workflow?id=897e9d7432d231e9, https://usegalaxy.org.au/published/workflow?id=8d6d4f848067f3d9, https://usegalaxy.org.au/published/workflow?id=8fb691706f47527a, https://usegalaxy.org.au/published/workflow?id=9b18123afbe1264b, https://usegalaxy.org.au/published/workflow?id=9cf3860659285656, https://usegalaxy.org.au/published/workflow?id=a763e53653b10ce0, https://usegalaxy.org.au/published/workflow?id=ae773dfaa074cb72, https://usegalaxy.org.au/published/workflow?id=b03b577156e4db5b, https://usegalaxy.org.au/published/workflow?id=b517cabb697491a0, https://usegalaxy.org.au/published/workflow?id=b7226d37b25df833, https://usegalaxy.org.au/published/workflow?id=bb0feff5d764df60, https://usegalaxy.org.au/published/workflow?id=c2dee690320f9845, https://usegalaxy.org.au/published/workflow?id=c64dcc1e6a67f3e4, https://usegalaxy.org.au/published/workflow?id=c8d18e2c03dca796, https://usegalaxy.org.au/published/workflow?id=ccc6602623583bcc, https://usegalaxy.org.au/published/workflow?id=ccfae75390038ced, https://usegalaxy.org.au/published/workflow?id=ce7f6a1c824920e2, https://usegalaxy.org.au/published/workflow?id=d5a3fd1faa3f0a41, https://usegalaxy.org.au/published/workflow?id=e1fd89e7248b6661, https://usegalaxy.org.au/published/workflow?id=f627023a3401bf9b, https://usegalaxy.org/published/workflow?id=03a1cd225af6de69, https://usegalaxy.org/published/workflow?id=044c5ce43f2e1829, https://usegalaxy.org/published/workflow?id=098375608a1223aa, https://usegalaxy.org/published/workflow?id=10fa713ca3076a47, https://usegalaxy.org/published/workflow?id=1234a128adc25b03, https://usegalaxy.org/published/workflow?id=1f28e673ea725541, https://usegalaxy.org/published/workflow?id=2125db88b4a71c09, https://usegalaxy.org/published/workflow?id=26019c2b056d3a1c, https://usegalaxy.org/published/workflow?id=2f774500d5bec9a6, https://usegalaxy.org/published/workflow?id=39810594e5c332d5, https://usegalaxy.org/published/workflow?id=3ab66315f50501f0, https://usegalaxy.org/published/workflow?id=3ad9cdcda44b7dfb, https://usegalaxy.org/published/workflow?id=3e57e668cf698d19, https://usegalaxy.org/published/workflow?id=3e6c9ab5ef3250ae, https://usegalaxy.org/published/workflow?id=413d7e5aa7378cf1, https://usegalaxy.org/published/workflow?id=42bc3a770f0ab6b8, https://usegalaxy.org/published/workflow?id=4bbe4c8a6c52d03a, https://usegalaxy.org/published/workflow?id=516a2181b41af94e, https://usegalaxy.org/published/workflow?id=5336b9d26a083983, https://usegalaxy.org/published/workflow?id=53fdff74729a6780, https://usegalaxy.org/published/workflow?id=5497e8630ebfeb42, https://usegalaxy.org/published/workflow?id=582f3de3971fc38c, https://usegalaxy.org/published/workflow?id=5fc0c7c65edc7457, https://usegalaxy.org/published/workflow?id=63b3b266bde77563, https://usegalaxy.org/published/workflow?id=676b88d0aac13fa5, https://usegalaxy.org/published/workflow?id=69712265fdb10ed5, https://usegalaxy.org/published/workflow?id=76b8ed1c68678b62, https://usegalaxy.org/published/workflow?id=778a8867b0a6ea4f, https://usegalaxy.org/published/workflow?id=7a26069c2939bef9, https://usegalaxy.org/published/workflow?id=7aa36b1722ff4c11, https://usegalaxy.org/published/workflow?id=82681bd5f059e39a, https://usegalaxy.org/published/workflow?id=868acaf49d0743ec, https://usegalaxy.org/published/workflow?id=87eb1a8ee7a2c984, https://usegalaxy.org/published/workflow?id=89f52c97b3aee938, https://usegalaxy.org/published/workflow?id=8bcab83874cbc75c, https://usegalaxy.org/published/workflow?id=8e6d24a14d2908c2, https://usegalaxy.org/published/workflow?id=8ebcae16a7822d93, https://usegalaxy.org/published/workflow?id=8fb8c80c93ad694e, https://usegalaxy.org/published/workflow?id=93e69c7e7a857ca3, https://usegalaxy.org/published/workflow?id=a8ddab36010ed4c3, https://usegalaxy.org/published/workflow?id=b1b75a9323d25085, https://usegalaxy.org/published/workflow?id=b28789b6a0e1f5c9, https://usegalaxy.org/published/workflow?id=b73e416c06790ac5, https://usegalaxy.org/published/workflow?id=bc83c42b44c4b03f, https://usegalaxy.org/published/workflow?id=bd2ce9a97c1598df, https://usegalaxy.org/published/workflow?id=bdfb27e4ef7b6138, https://usegalaxy.org/published/workflow?id=be7dab2274c1acdd, https://usegalaxy.org/published/workflow?id=c74e3a24751d9924, https://usegalaxy.org/published/workflow?id=cdb6c9c7037a95b2, https://usegalaxy.org/published/workflow?id=d2f7fd589a91124a, https://usegalaxy.org/published/workflow?id=d82db9c29b998f22, https://usegalaxy.org/published/workflow?id=dc7f05cb5a62da77, https://usegalaxy.org/published/workflow?id=e035be74e3c85bf5, https://usegalaxy.org/published/workflow?id=e33f6a058c5f57e5, https://usegalaxy.org/published/workflow?id=e55ca98817c1855e, https://usegalaxy.org/published/workflow?id=f3c8093c5b8a7233, https://workflowhub.eu/workflows/1442?version=1, https://workflowhub.eu/workflows/1494?version=1, https://workflowhub.eu/workflows/1525?version=1, https://workflowhub.eu/workflows/1546?version=1, https://workflowhub.eu/workflows/1688?version=1, https://workflowhub.eu/workflows/1706?version=1, https://workflowhub.eu/workflows/1715?version=1, https://workflowhub.eu/workflows/1792?version=1, https://workflowhub.eu/workflows/400?version=12, https://workflowhub.eu/workflows/401?version=13, https://workflowhub.eu/workflows/513?version=3, https://workflowhub.eu/workflows/754?version=1 |
genome-annotation/braker3, genome-annotation/comparison-braker-helixer-annotation, genome-annotation/funannotate, proteomics/neoantigen-fusion-database-generation, single-cell/scrna-preprocessing, single-cell/scrna-preprocessing-tenx, transcriptomics/clipseq, transcriptomics/differential-isoform-expression, transcriptomics/ref-based |
|
ribowaltz |
ribowaltz_process, ribowaltz_plot |
Calculation of optimal P-site offsets, diagnostic analysis and visual inspection of ribosome profiling data |
2022-09-22 |
https://github.com/LabTranslationalArchitectomics/riboWaltz |
1.2.0 |
ribowaltz |
2.0 |
To update |
Transcriptomics, RNA |
|
|
Computational biology |
Computational biology |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ribowaltz |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ribowaltz |
riboWaltz |
riboWaltz |
riboWaltz is an R package for calculation of optimal P-site offsets, diagnostic analysis and visual inspection of ribosome profiling data. |
|
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
18 |
18 |
194 |
194 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
194 |
194 |
18 |
18 |
|
|
|
rnaquast |
rna_quast |
rnaQuast (RNA Quality Assessment Tool) evaluates genome assemblies. |
2020-10-05 |
https://github.com/ablab/rnaquast |
2.3.0 |
rnaquast |
2.3.0 |
Up-to-date |
Assembly, RNA |
De-novo assembly, Transcriptome assembly, Sequence assembly validation |
De-novo assembly, Transcriptome assembly, Sequence assembly validation |
Sequence assembly, Transcriptomics, RNA-Seq |
Sequence assembly, Transcriptomics, RNA-Seq |
iuc |
https://git.ufz.de/lehmanju/rnaquast |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/rnaquast |
rnaQUAST |
rnaQUAST |
Quality assessment tool for de novo transcriptome assemblies. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
285 |
285 |
1626 |
1626 |
124 |
124 |
562 |
562 |
8 |
8 |
128 |
128 |
8 |
8 |
100 |
100 |
2416 |
2416 |
425 |
425 |
https://dev.workflowhub.eu/workflows/1324?version=3, https://usegalaxy.eu/published/workflow?id=47a0407867a90f95, https://usegalaxy.eu/published/workflow?id=9b025479fade745d, https://usegalaxy.eu/published/workflow?id=b7a3cbcd32734e8b, https://workflowhub.eu/workflows/1688?version=1 |
transcriptomics/differential-isoform-expression |
|
roary |
roary |
Roary the pangenome pipeline |
2017-06-21 |
https://sanger-pathogens.github.io/Roary/ |
3.13.0 |
roary |
3.13.0 |
Up-to-date |
Sequence Analysis |
Genome assembly |
Genome assembly |
DNA, Genomics, Mapping |
DNA, Genomics, Mapping |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/roary |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/roary |
roary |
Roary |
A high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (produced by Prokka (Seemann, 2014)) and calculates the pan genome. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1728 |
1804 |
16888 |
18042 |
2070 |
2070 |
14013 |
14013 |
573 |
626 |
5106 |
6163 |
41 |
41 |
139 |
139 |
38357 |
36146 |
4541 |
4412 |
https://usegalaxy.eu/published/workflow?id=628062a8cf93261f, https://usegalaxy.eu/published/workflow?id=94c3d329c31c712f, https://usegalaxy.eu/published/workflow?id=e16e524c557d7928, https://usegalaxy.org.au/published/workflow?id=3fd2195b6928d5e0, https://usegalaxy.org/published/workflow?id=78d8b738f5715a8a |
|
|
rp2biosensor |
rp2biosensor |
Build Sensing-Enabling Metabolic Pathways from RetroPath2.0 output |
2023-01-05 |
https://github.com/brsynth/rp2biosensor |
3.2.1 |
rp2biosensor |
|
To update |
Synthetic Biology |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/rp2biosensor |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/rp2biosensor |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
rp2paths |
rp2paths |
Enumerate and seperate the different pathways generated by RetroPath2.0 |
2022-10-17 |
https://github.com/brsynth/rp2paths |
1.5.1 |
rp2paths |
|
To update |
Synthetic Biology |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/rp2paths |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/rp2paths |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
https://dev.workflowhub.eu/workflows/1142?version=2, https://workflowhub.eu/workflows/1581?version=1 |
synthetic-biology/retrosynthesis_analysis |
|
rpbasicdesign |
rpbasicdesign |
Extracting enzyme IDs from rpSBML files |
2022-03-30 |
https://github.com/brsynth/rpbasicdesign |
1.2.2 |
rpbasicdesign |
|
To update |
Synthetic Biology |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/rpbasicdesign |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/rpbasicdesign |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
https://dev.workflowhub.eu/workflows/1147?version=2, https://workflowhub.eu/workflows/1576?version=1 |
synthetic-biology/basic_assembly_analysis |
|
rpfba |
rpfba |
Perform FBA for the RetroPath2.0 heterologous pathways |
2022-01-17 |
https://github.com/brsynth/rptools/releases |
5.12.3 |
rptools |
|
To update |
Synthetic Biology |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/rpfba |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/rpfba |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
https://dev.workflowhub.eu/workflows/1048?version=1, https://dev.workflowhub.eu/workflows/1137?version=2, https://workflowhub.eu/workflows/1572?version=1 |
synthetic-biology/pathway_analysis |
|
rptools |
rptools_rpextractsink, rptools_rpfba, rptools_rpranker, rptools_rpreport, rptools_rpviz |
Suite of tools that work on rpSBML format |
2022-11-16 |
https://github.com/brsynth/rptools |
5.13.1 |
rptools |
|
To update |
Synthetic Biology |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/rptools |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
rrparser |
rrparser |
Reaction Rules Parser |
2022-06-27 |
https://github.com/brsynth/RRParser |
2.7.0 |
rrparser |
|
To update |
Synthetic Biology |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/rrparser |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/rrparser |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
https://dev.workflowhub.eu/workflows/1142?version=2, https://workflowhub.eu/workflows/1581?version=1 |
synthetic-biology/retrosynthesis_analysis |
|
rseqc |
rseqc_FPKM_count, rseqc_RNA_fragment_size, rseqc_RPKM_saturation, rseqc_bam2wig, rseqc_bam_stat, rseqc_clipping_profile, rseqc_deletion_profile, rseqc_geneBody_coverage, rseqc_geneBody_coverage2, rseqc_infer_experiment, rseqc_inner_distance, rseqc_insertion_profile, rseqc_junction_annotation, rseqc_junction_saturation, rseqc_mismatch_profile, rseqc_read_GC, rseqc_read_NVC, rseqc_read_distribution, rseqc_read_duplication, rseqc_read_hexamer, rseqc_read_quality, rseqc_tin |
an RNA-seq quality control package |
2017-02-27 |
https://code.google.com/p/rseqc/ |
5.0.3 |
rseqc |
5.0.4 |
To update |
Convert Formats, Sequence Analysis, RNA, Transcriptomics, Visualization |
Data handling |
Data handling |
Sequencing |
Sequencing |
nilesh |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/rseqc |
rseqc |
RSeQC |
Provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data. Some basic modules quickly inspect sequence quality, nucleotide composition bias, PCR bias and GC bias, while RNA-seq specific modules evaluate sequencing saturation, mapped reads distribution, coverage uniformity, strand specificity, transcript level RNA integrity etc. |
|
22 |
22 |
22 |
22 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
22 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
22 |
0 |
0 |
0 |
0 |
22 |
22 |
22 |
0 |
3862 |
4705 |
149222 |
164718 |
3826 |
4525 |
141933 |
179278 |
603 |
630 |
26252 |
28021 |
634 |
634 |
43650 |
43650 |
415667 |
361057 |
10494 |
8925 |
https://dev.workflowhub.eu/workflows/1001?version=1, https://dev.workflowhub.eu/workflows/1295?version=1, https://dev.workflowhub.eu/workflows/1299?version=2, https://dev.workflowhub.eu/workflows/1324?version=3, https://dev.workflowhub.eu/workflows/1327?version=1, https://dev.workflowhub.eu/workflows/1329?version=5, https://usegalaxy.eu/published/workflow?id=1ee43d90b69829e9, https://usegalaxy.eu/published/workflow?id=1f9a9a7998ef5ab3, https://usegalaxy.eu/published/workflow?id=20ada53472782c9b, https://usegalaxy.eu/published/workflow?id=47a0407867a90f95, https://usegalaxy.eu/published/workflow?id=5e4135eeb4972709, https://usegalaxy.eu/published/workflow?id=93d1035a307fe63d, https://usegalaxy.eu/published/workflow?id=985044b4b2c51425, https://usegalaxy.eu/published/workflow?id=9b025479fade745d, https://usegalaxy.eu/published/workflow?id=9c7a218993788493, https://usegalaxy.eu/published/workflow?id=a28c207730e7e13d, https://usegalaxy.eu/published/workflow?id=a52c5dd688def9ba, https://usegalaxy.eu/published/workflow?id=b7a3cbcd32734e8b, https://usegalaxy.eu/published/workflow?id=cc37667c2d1f9056, https://usegalaxy.eu/published/workflow?id=ccef778cfd9024d1, https://usegalaxy.eu/published/workflow?id=df3bf1700d3faefc, https://usegalaxy.eu/published/workflow?id=f33b5135ee99e0dc, https://usegalaxy.fr/published/workflow?id=334189184455d9a2, https://usegalaxy.fr/published/workflow?id=5d83e0886f2a7465, https://usegalaxy.fr/published/workflow?id=74b4d11c07f7f0a4, https://usegalaxy.fr/published/workflow?id=826cffb2458e4067, https://usegalaxy.org.au/published/workflow?id=6e1e24f9e0326930, https://usegalaxy.org.au/published/workflow?id=75113a1b41904d2a, https://usegalaxy.org.au/published/workflow?id=85aede91db0122e4, https://usegalaxy.org.au/published/workflow?id=a763e53653b10ce0, https://usegalaxy.org.au/published/workflow?id=af7b95f46485308c, https://usegalaxy.org.au/published/workflow?id=b08342866a118a5e, https://usegalaxy.org.au/published/workflow?id=bb0feff5d764df60, https://usegalaxy.org.au/published/workflow?id=ce7f6a1c824920e2, https://usegalaxy.org.au/published/workflow?id=e1fd89e7248b6661, https://usegalaxy.org/published/workflow?id=044c5ce43f2e1829, https://usegalaxy.org/published/workflow?id=582f3de3971fc38c, https://usegalaxy.org/published/workflow?id=5944c5effd56b0d6, https://usegalaxy.org/published/workflow?id=7022c4d9af725e5c, https://usegalaxy.org/published/workflow?id=73f5b1a6fd3c703f, https://usegalaxy.org/published/workflow?id=76b8ed1c68678b62, https://usegalaxy.org/published/workflow?id=7e9269e78e989480, https://usegalaxy.org/published/workflow?id=a743746151101352, https://usegalaxy.org/published/workflow?id=b11796364c22235e, https://usegalaxy.org/published/workflow?id=b1a98a2d5ebda1c5, https://usegalaxy.org/published/workflow?id=e035be74e3c85bf5, https://usegalaxy.org/published/workflow?id=e33f6a058c5f57e5, https://usegalaxy.org/published/workflow?id=eb4b32fcf4a9f64a, https://workflowhub.eu/workflows/1103?version=3, https://workflowhub.eu/workflows/1104?version=2, https://workflowhub.eu/workflows/1675?version=1, https://workflowhub.eu/workflows/1688?version=1, https://workflowhub.eu/workflows/1692?version=1, https://workflowhub.eu/workflows/1695?version=1, https://workflowhub.eu/workflows/1715?version=1, https://workflowhub.eu/workflows/688?version=1 |
transcriptomics/differential-isoform-expression, transcriptomics/minerva-pathways, transcriptomics/ref-based, transcriptomics/rna-seq-reads-to-counts |
|
ruvseq |
ruvseq |
Remove Unwanted Variation from RNA-Seq Data |
2018-08-30 |
https://www.bioconductor.org/packages/release/bioc/html/DESeq2.html |
1.26.0 |
bioconductor-ruvseq |
1.40.0 |
To update |
Transcriptomics, RNA, Statistics |
Differential gene expression analysis |
Differential gene expression analysis |
Gene expression, RNA-seq |
Gene expression |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ruvseq |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ruvseq |
ruvseq |
RUVSeq |
This package implements the remove unwanted variation (RUV) methods for the normalization of RNA-Seq read counts between samples. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
169 |
197 |
1261 |
1412 |
313 |
313 |
2325 |
2325 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3737 |
3586 |
510 |
482 |
|
|
|
salsa |
salsa |
A tool to scaffold long read assemblies with Hi-C |
2021-01-14 |
https://github.com/marbl/SALSA |
2.3 |
salsa2 |
2.3 |
Up-to-date |
Assembly |
Genome assembly, De-novo assembly, Scaffolding |
Genome assembly, De-novo assembly, Scaffolding |
Sequence assembly, DNA binding sites, Mapping |
Sequence assembly, DNA binding sites, Mapping |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/salsa2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/salsa2 |
SALSA |
SALSA |
> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'chromosome-scale', 'reference-quality', 'Hi-C', 'scaffolder' | Integrating Hi-C links with assembly graphs for chromosome-scale assembly | SALSA: A tool to scaffold long read assemblies with Hi-C data | SALSA: A tool to scaffold long read assemblies with Hi-C | This code is used to scaffold your assemblies using Hi-C data. This version implements some improvements in the original SALSA algorithm. If you want to use the old version, it can be found in the old_salsa branch |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
122 |
122 |
467 |
467 |
94 |
94 |
1057 |
1057 |
24 |
24 |
410 |
410 |
0 |
0 |
0 |
0 |
1934 |
1934 |
240 |
240 |
https://dev.workflowhub.eu/workflows/1002?version=1, https://dev.workflowhub.eu/workflows/1187?version=2, https://usegalaxy.org.au/published/workflow?id=434127690544d0e9, https://usegalaxy.org.au/published/workflow?id=e07866576cc2f467, https://workflowhub.eu/workflows/1607?version=1 |
assembly/vgp_genome_assembly |
|
samblaster |
samblaster |
samblaster marks duplicates and can output split and discordant alignments from SAM/BAM files |
2016-12-18 |
https://github.com/GregoryFaust/samblaster |
0.1.26 |
samblaster |
0.1.26 |
Up-to-date |
SAM, Fastq Manipulation, Variant Analysis |
Split read mapping |
Split read mapping |
DNA, Sequencing, Mapping |
DNA, Sequencing, Mapping |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/samblaster |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/samblaster |
samblaster |
SAMBLASTER |
A tool to mark duplicates and extract discordant and split reads from SAM files. |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
samtools |
|
|
2017-01-24 |
https://github.com/samtools/samtools |
1.22 |
samtools |
1.22.1 |
To update |
SAM |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/samtools |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
sansa |
sansa_annotate |
Sansa is a tool for structural variant annotation. |
2020-12-05 |
https://github.com/dellytools/sansa |
0.2.2 |
sansa |
0.2.3 |
To update |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/sansa |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
36 |
36 |
139 |
139 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
139 |
139 |
36 |
36 |
|
|
|
sarscov2formatter |
sarscov2formatter |
sarscov2formatter custom script |
2020-05-01 |
https://github.com/nickeener/sarscov2formatter |
1.0 |
sarscov2formatter |
1.0 |
Up-to-date |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/sarscov2formatter |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/sarscov2formatter |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
16 |
16 |
174 |
174 |
30 |
30 |
400 |
400 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
574 |
574 |
46 |
46 |
https://usegalaxy.org/published/workflow?id=a46ad0b9240d1a13, https://usegalaxy.org/published/workflow?id=e1cc0886cd27b92e |
|
|
sarscov2summary |
sarscov2summary |
sarscov2summary custom script |
2020-05-01 |
https://github.com/nickeener/sarscov2summary |
0.1 |
sarscov2summary |
0.5 |
To update |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/sarscov2summary |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/sarscov2summary |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
5 |
5 |
140 |
140 |
6 |
6 |
253 |
253 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
393 |
393 |
11 |
11 |
https://usegalaxy.org/published/workflow?id=a46ad0b9240d1a13, https://usegalaxy.org/published/workflow?id=e1cc0886cd27b92e |
|
|
sbml2sbol |
sbml2sbol |
Convert SBML to SBOL format |
2022-10-15 |
https://github.com/neilswainston/SbmlToSbol |
0.1.13 |
sbml2sbol |
|
To update |
Synthetic Biology |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/sbml2sbol |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/sbml2sbol |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
scanpy |
scanpy_cluster_reduce_dimension, scanpy_filter, scanpy_inspect, scanpy_normalize, scanpy_plot, scanpy_remove_confounders |
Scanpy – Single-Cell Analysis in Python |
2019-03-04 |
https://scanpy.readthedocs.io |
1.10.2 |
scanpy |
1.7.2 |
To update |
Single Cell, Spatial Omics, Transcriptomics |
Differential gene expression analysis, Principal component visualisation, Expression profile clustering |
Differential gene expression analysis, Principal component visualisation, Expression profile clustering |
Gene expression, Cell biology, Genetics, Single-cell sequencing |
Gene expression, Cell biology, Genetics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/scanpy |
scanpy |
SCANPY |
Scalable toolkit for analyzing single-cell gene expression data. It includes preprocessing, visualization, clustering, pseudotime and trajectory inference and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells. |
|
6 |
6 |
6 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
6 |
6 |
0 |
763 |
774 |
68358 |
69738 |
353 |
353 |
33577 |
33577 |
113 |
113 |
20077 |
20077 |
0 |
0 |
0 |
0 |
123392 |
122012 |
1240 |
1229 |
https://dev.workflowhub.eu/workflows/1011?version=1, https://dev.workflowhub.eu/workflows/1013?version=1, https://dev.workflowhub.eu/workflows/1014?version=1, https://dev.workflowhub.eu/workflows/1016?version=1, https://dev.workflowhub.eu/workflows/1017?version=1, https://dev.workflowhub.eu/workflows/1212?version=1, https://dev.workflowhub.eu/workflows/1219?version=2, https://dev.workflowhub.eu/workflows/1246?version=2, https://dev.workflowhub.eu/workflows/1259?version=3, https://dev.workflowhub.eu/workflows/1266?version=1, https://dev.workflowhub.eu/workflows/1275?version=1, https://dev.workflowhub.eu/workflows/1343?version=2, https://dev.workflowhub.eu/workflows/1377?version=1, https://dev.workflowhub.eu/workflows/1378?version=1, https://usegalaxy.eu/published/workflow?id=0d7c643d7720ee31, https://usegalaxy.eu/published/workflow?id=171d6fca2c3339e2, https://usegalaxy.eu/published/workflow?id=21315ffd2df2f159, https://usegalaxy.eu/published/workflow?id=37e51e215684bdcc, https://usegalaxy.eu/published/workflow?id=4756053b2596b6cf, https://usegalaxy.eu/published/workflow?id=715ca378c1d68de3, https://usegalaxy.eu/published/workflow?id=77e85bde57477194, https://usegalaxy.eu/published/workflow?id=78dc6fca5b58ec05, https://usegalaxy.eu/published/workflow?id=921cab3e6faf30be, https://usegalaxy.eu/published/workflow?id=9d15b328d8408715, https://usegalaxy.eu/published/workflow?id=ae79275d3568ad31, https://usegalaxy.eu/published/workflow?id=b3cf397fd4d1bea8, https://usegalaxy.eu/published/workflow?id=b5627201bb4f6943, https://usegalaxy.eu/published/workflow?id=d70dc4cfeedb690b, https://usegalaxy.eu/published/workflow?id=d7c0c972c471d514, https://usegalaxy.eu/published/workflow?id=ddced7b107e4707a, https://usegalaxy.eu/published/workflow?id=e2391c40d24d403f, https://usegalaxy.eu/published/workflow?id=e472096116cbe392, https://usegalaxy.eu/published/workflow?id=e4e969e9943cdaa5, https://usegalaxy.eu/published/workflow?id=f05754467a439134, https://usegalaxy.org.au/published/workflow?id=102eb726f63f3190, https://usegalaxy.org.au/published/workflow?id=106080375ad4eaaa, https://usegalaxy.org.au/published/workflow?id=218ffb4438833bdd, https://usegalaxy.org.au/published/workflow?id=57321b64220d5835, https://usegalaxy.org.au/published/workflow?id=8055596d732590d6, https://usegalaxy.org.au/published/workflow?id=8bc01c1fdd62ad12, https://usegalaxy.org/published/workflow?id=dd43ae9a5b303086, https://usegalaxy.org/published/workflow?id=ea3257e0ef9f505a, https://usegalaxy.org/published/workflow?id=f35ccb693cd874c1, https://workflowhub.eu/workflows/1077?version=1, https://workflowhub.eu/workflows/1256?version=1, https://workflowhub.eu/workflows/1356?version=1, https://workflowhub.eu/workflows/1362?version=1, https://workflowhub.eu/workflows/1485?version=1, https://workflowhub.eu/workflows/1490?version=1, https://workflowhub.eu/workflows/1496?version=1, https://workflowhub.eu/workflows/1501?version=1, https://workflowhub.eu/workflows/1502?version=1, https://workflowhub.eu/workflows/1519?version=1, https://workflowhub.eu/workflows/1550?version=1, https://workflowhub.eu/workflows/1551?version=1, https://workflowhub.eu/workflows/1556?version=1, https://workflowhub.eu/workflows/1574?version=1, https://workflowhub.eu/workflows/467?version=4, https://workflowhub.eu/workflows/468?version=3 |
single-cell/pseudobulk-analysis, single-cell/scatac-preprocessing-tenx, single-cell/scatac-standard-processing-snapatac2, single-cell/scrna-case_basic-pipeline, single-cell/scrna-case_cell-cycle, single-cell/scrna-plant, single-cell/scrna-scanpy-pbmc3k |
|
scater |
scater_create_qcmetric_ready_sce, scater_filter, scater_plot_dist_scatter, scater_plot_pca, scater_plot_tsne |
Scater (Single-Cell Analysis Toolkit for gene Expression data in R) is acollection of tools for doing various analyses of single-cell RNA-seq geneexpression data, with a focus on quality control and visualization. |
2019-07-18 |
http://bioconductor.org/packages/scater/ |
1.22.0 |
bioconductor-scater |
1.34.1 |
To update |
Single Cell, Transcriptomics, Visualization |
Read pre-processing, Sequencing quality control, Sequence visualisation |
Read pre-processing, Sequence visualisation |
RNA-Seq, Quality affairs, Molecular genetics |
RNA-Seq, Quality affairs, Molecular genetics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/scater |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/scater |
scater |
scater |
Pre-processing, quality control, normalization and visualization of single-cell RNA-seq data. |
|
0 |
5 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
5 |
5 |
0 |
90 |
94 |
1234 |
1397 |
0 |
0 |
0 |
0 |
8 |
8 |
1050 |
1050 |
0 |
0 |
0 |
0 |
2447 |
2284 |
102 |
98 |
https://dev.workflowhub.eu/workflows/1241?version=2, https://usegalaxy.eu/published/workflow?id=f055b8fa294d4be8, https://usegalaxy.org.au/published/workflow?id=3c9140288202aa76, https://workflowhub.eu/workflows/1511?version=1 |
single-cell/scrna-scater-qc |
|
sceasy_convert |
sceasy_convert |
Converter between difference single-cell formats |
2023-11-10 |
https://github.com/cellgeni/sceasy/ |
0.0.7 |
r-sceasy |
0.0.7 |
Up-to-date |
Single Cell, Spatial Omics, Convert Formats |
Data handling |
Data handling |
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/sceasy/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/sceasy |
sceasy |
sceasy |
sceasy is a package that helps easy conversion of different single-cell data formats to each other. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
286 |
286 |
1379 |
1381 |
83 |
83 |
470 |
470 |
3 |
3 |
147 |
147 |
0 |
0 |
0 |
0 |
1998 |
1996 |
372 |
372 |
https://dev.workflowhub.eu/workflows/1024?version=1, https://dev.workflowhub.eu/workflows/1025?version=1, https://dev.workflowhub.eu/workflows/1263?version=1, https://usegalaxy.eu/published/workflow?id=0e6e181234b48121, https://usegalaxy.eu/published/workflow?id=1e2d27fae8a41ac1, https://usegalaxy.eu/published/workflow?id=9a9bbd8046da7b19, https://usegalaxy.eu/published/workflow?id=a0f1959a9f4533f7, https://usegalaxy.eu/published/workflow?id=bcec217b62ccc7af, https://usegalaxy.eu/published/workflow?id=c6adc3b665828a6f, https://usegalaxy.eu/published/workflow?id=df455b86fff16116, https://usegalaxy.eu/published/workflow?id=e06934a35fc18f2c, https://usegalaxy.eu/published/workflow?id=f944ad0c35d1a472, https://usegalaxy.org/published/workflow?id=1fe6b25825d9b736, https://usegalaxy.org/published/workflow?id=a2a924b871b1c96d, https://workflowhub.eu/workflows/1533?version=1, https://workflowhub.eu/workflows/1537?version=1 |
single-cell/EBI-retrieval, single-cell/scrna-case_alevin, single-cell/scrna-data-ingest |
|
schicexplorer |
schicexplorer_schicadjustmatrix, schicexplorer_schiccluster, schicexplorer_schicclustercompartments, schicexplorer_schicclusterminhash, schicexplorer_schicclustersvl, schicexplorer_schicconsensusmatrices, schicexplorer_schiccorrectmatrices, schicexplorer_schiccreatebulkmatrix, schicexplorer_schicdemultiplex, schicexplorer_schicinfo, schicexplorer_schicmergematrixbins, schicexplorer_schicmergetoscool, schicexplorer_schicnormalize, schicexplorer_schicplotclusterprofiles, schicexplorer_schicplotconsensusmatrices, schicexplorer_schicqualitycontrol |
scHiCExplorer: Set of programs to process, analyze and visualize scHi-C data. |
2019-12-16 |
https://github.com/joachimwolff/schicexplorer |
4 |
schicexplorer |
7 |
To update |
Sequence Analysis, Transcriptomics, Visualization, Single Cell |
Validation, Visualisation, Standardisation and normalisation |
Validation, Visualisation, Standardisation and normalisation |
Workflows, DNA, Chromosome conformation capture, ChIP-seq, Epigenetics |
Workflows, DNA, Chromosome conformation capture, ChIP-seq, Epigenetics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/schicexplorer |
hicexplorer |
HiCExplorer |
A web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization.HiCExplorer — HiCExplorer 3.6 documentation.scHiCExplorer — scHiCExplorer 7 documentation.Free document hosting provided by Read the Docs. |
|
16 |
16 |
16 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
16 |
16 |
16 |
0 |
11 |
11 |
793 |
813 |
10 |
10 |
23 |
23 |
1 |
1 |
685 |
685 |
0 |
0 |
0 |
0 |
1521 |
1501 |
22 |
22 |
|
|
|
scikit_bio |
scikit_bio_diversity_beta_diversity |
scikit-bio: an open-source, BSD-licensed, python package providing data structures, algorithms, and educational resources for bioinformatics |
2016-05-31 |
http://scikit-bio.org/ |
0.4.2 |
scikit-bio |
0.4.2 |
Up-to-date |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/scikit_bio |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/scikit-bio |
|
|
|
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
295 |
428 |
1488 |
2043 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2044 |
1489 |
429 |
296 |
https://usegalaxy.org/published/workflow?id=7251c6e0dad8f927 |
|
|
scoary |
scoary |
Scoary calculates the assocations between all genes in the accessory genome and the traits. |
2021-03-18 |
https://github.com/AdmiralenOla/Scoary |
1.6.16 |
scoary |
1.6.16 |
Up-to-date |
Metagenomics |
Analysis |
Analysis |
Genotype and phenotype, Model organisms, GWAS study, Functional genomics |
Genotype and phenotype, Model organisms, GWAS study, Functional genomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/scoary |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/scoary |
scoary |
Scoary |
Pan-genome wide association studies and is designed to take the gene_presence_absence.csv file from Roary as well as a traits file created by the user and calculate the assocations between all genes in the accessory genome (all genes that are present in i genomes where 1 < i < N) and the traits. It reports a list of genes sorted by strength of association per trait. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
97 |
97 |
1120 |
1120 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1120 |
1120 |
97 |
97 |
|
|
|
scpipe |
scpipe |
A flexible preprocessing pipeline for single-cell RNA-sequencing data |
2018-08-12 |
http://bioconductor.org/packages/release/bioc/html/scPipe.html |
1.0.0+galaxy2 |
bioconductor-scpipe |
2.6.0 |
To update |
Transcriptomics, Single Cell |
Genome annotation, Validation, Alignment, Visualisation |
Genome annotation, Validation, Alignment, Visualisation |
Gene expression, RNA-Seq, Sequencing |
Gene expression, RNA-Seq |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/scpipe |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/scpipe |
scpipe |
scPipe |
A preprocessing pipeline for single cell RNA-seq data that starts from the fastq files and produces a gene count matrix with associated quality control information. It can process fastq data generated by CEL-seq, MARS-seq, Drop-seq, Chromium 10x and SMART-seq protocols. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
32 |
38 |
254 |
632 |
61 |
61 |
786 |
786 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
1419 |
1041 |
100 |
94 |
https://usegalaxy.eu/published/workflow?id=0a692a2e643b9e1a |
|
|
seaborn |
seaborn, seaborn_pairgrid |
Seaborn is a Python data visualization library based on Matplotlib. |
2025-05-13 |
https://seaborn.pydata.org/ |
0.13.2 |
seaborn |
|
To update |
Visualization |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/seaborn |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/seaborn |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
seacr |
seacr |
SEACR is intended to call peaks and enriched regions from sparse CUT&RUN or chromatin profiling data in which background is dominated by zeroes. |
2020-02-05 |
https://github.com/FredHutch/SEACR |
1.3 |
seacr |
1.3 |
Up-to-date |
Epigenetics, ChIP-seq |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/seacr |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/seacr |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
131 |
131 |
5773 |
5773 |
267 |
267 |
7545 |
7545 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
13318 |
13318 |
398 |
398 |
https://usegalaxy.eu/published/workflow?id=719314fa5263b501 |
|
|
selenzy_wrapper |
selenzy_wrapper |
Performs enzyme selection from a reaction query. |
2022-06-29 |
https://github.com/brsynth/selenzy-wrapper |
0.3.0 |
selenzy_wrapper |
0.3.0 |
Up-to-date |
Synthetic Biology |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/selenzy_wrapper |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/selenzy_wrapper |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
semibin |
semibin_bin, semibin_concatenate_fasta, semibin_generate_cannot_links, semibin_generate_sequence_features, semibin, semibin_train |
SemiBin: Semi-supervised Metagenomic Binning Using Siamese Neural Networks |
2022-10-14 |
https://semibin.readthedocs.io/en/latest/ |
2.1.0 |
semibin |
2.2.0 |
To update |
Metagenomics |
Sequence assembly, Read binning |
Sequence assembly, Read binning |
Metagenomics, Machine learning, Microbial ecology, Sequence assembly |
Metagenomics, Machine learning, Microbial ecology, Sequence assembly |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/semibin |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/semibin |
semibin |
SemiBin |
Command tool for metagenomic binning with semi-supervised deep learning using information from reference genomes. |
|
1 |
0 |
6 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
0 |
0 |
38 |
38 |
1862 |
1862 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
52 |
52 |
1914 |
1914 |
40 |
40 |
https://usegalaxy.eu/published/workflow?id=0563f58718be932d, https://usegalaxy.eu/published/workflow?id=1e5f1d9a51032e44, https://usegalaxy.eu/published/workflow?id=3f6c7249ef71ae41, https://usegalaxy.eu/published/workflow?id=43098b8afe78b071, https://usegalaxy.eu/published/workflow?id=7ecd92cb382d8168, https://usegalaxy.eu/published/workflow?id=83c5bf0208f4d217, https://usegalaxy.eu/published/workflow?id=97312d273b6e8bd9, https://usegalaxy.eu/published/workflow?id=aa5b077da1d36b23, https://usegalaxy.eu/published/workflow?id=b0377f05f97b18b1, https://usegalaxy.eu/published/workflow?id=ce5c9287a67e6085, https://workflowhub.eu/workflows/1352?version=3 |
|
|
seq2hla |
seq2hla |
Precision HLA typing and expression from RNAseq data |
2020-02-20 |
https://github.com/TRON-Bioinformatics/seq2HLA |
2.3 |
seq2hla |
2.3 |
Up-to-date |
Sequence Analysis |
Read mapping, Genetic variation analysis |
Read mapping, Genetic variation analysis |
Transcriptomics, Mapping |
Transcriptomics, Mapping |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/seq2hla |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/seq2hla |
seq2hla |
Seq2HLA |
seq2HLA is a computational tool to determine Human Leukocyte Antigen (HLA) directly from existing and future short RNA-Seq reads. It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie index comprising known HLA alleles and outputs the most likely HLA class I and class II types, a p-value for each call, and the expression of each class. |
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
51 |
51 |
382 |
382 |
1 |
1 |
6 |
6 |
2 |
2 |
45 |
45 |
0 |
0 |
0 |
0 |
433 |
433 |
54 |
54 |
https://dev.workflowhub.eu/workflows/1381?version=1, https://usegalaxy.eu/published/workflow?id=c3f2350f0be2d9c9, https://usegalaxy.eu/published/workflow?id=db270d0eb035609e, https://usegalaxy.org.au/published/workflow?id=2249ab6710f5e84d, https://usegalaxy.org/published/workflow?id=1d925422fc6094a0, https://workflowhub.eu/workflows/1430?version=1, https://workflowhub.eu/workflows/1794?version=1 |
proteomics/neoantigen-predicting-hla-binding |
|
seqcomplexity |
seqcomplexity |
Sequence complexity for raw reads |
2022-06-07 |
https://github.com/stevenweaver/seqcomplexity |
0.1.2 |
seqcomplexity |
0.1.2 |
Up-to-date |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/stephenshank/tools-iuc/tree/seqcomplexity/tools/seqcomplexity/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/seqcomplexity |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
21 |
21 |
76 |
76 |
51 |
51 |
126 |
126 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
202 |
202 |
72 |
72 |
|
|
|
seqkit |
seqkit_fx2tab, seqkit_grep, seqkit_head, seqkit_locate, seqkit_sort, seqkit_stats, seqkit_translate |
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation |
2022-06-01 |
https://bioinf.shenwei.me/seqkit/ |
2.10.1 |
seqkit |
2.10.1 |
Up-to-date |
Sequence Analysis |
DNA transcription, Sequence trimming, DNA translation, Sequence conversion |
DNA transcription, Sequence trimming, DNA translation |
Database management, Sequence analysis |
Database management, Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqkit |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/seqkit |
seqkit |
seqkit |
FASTA and FASTQ are basic and ubiquitous formats for storing nucleotide and protein sequences. Common manipulations of FASTA/Q file include converting, searching, filtering, deduplication, splitting, shuffling, and sampling. Existing tools only implement some of these manipulations, and not particularly efficiently, and some are only available for certain operating systems. Furthermore, the complicated installation process of required packages and running environments can render these programs less user friendly. SeqKit demonstrates competitive performance in execution time and memory usage compared to similar tools. The efficiency and usability of SeqKit enable researchers to rapidly accomplish common FASTA/Q file manipulations. |
|
0 |
6 |
6 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
265 |
265 |
8889 |
8889 |
0 |
0 |
0 |
0 |
58 |
58 |
646 |
646 |
65 |
65 |
551 |
551 |
10086 |
10086 |
388 |
388 |
https://usegalaxy.org.au/published/workflow?id=7a0c4804e4d4c905, https://usegalaxy.org.au/published/workflow?id=ed3e48a73b5aaa56, https://workflowhub.eu/workflows/601?version=2, https://workflowhub.eu/workflows/602?version=2, https://workflowhub.eu/workflows/697?version=1 |
|
|
seqprep |
seqprep |
Tool for merging paired-end Illumina reads and trimming adapters. |
2024-01-15 |
https://github.com/jstjohn/SeqPrep |
1.3.2 |
seqprep |
1.3.2 |
Up-to-date |
Fastq Manipulation, Sequence Analysis |
Nucleic acid design |
Nucleic acid design |
Genomics, Sequence assembly, Sequencing, Probes and primers |
Genomics, Sequence assembly, Sequencing, Probes and primers |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqprep |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/seqprep |
seqprep |
SeqPrep |
Strips adapters and optionally merges overlapping paired-end (or paired-end contamination in mate-pair libraries) illumina style reads. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
150 |
150 |
2742 |
2742 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2742 |
2742 |
150 |
150 |
|
|
|
seqsero2 |
seqsero2 |
Salmonella serotype prediction from genome sequencing data |
2023-11-07 |
https://github.com/denglab/SeqSero2 |
1.3.1 |
seqsero2 |
1.3.1 |
Up-to-date |
Sequence Analysis |
Genome indexing, Antimicrobial resistance prediction, Genome alignment |
Genome indexing, Antimicrobial resistance prediction, Genome alignment |
Whole genome sequencing, Sequence assembly, Genomics |
Whole genome sequencing, Sequence assembly, Genomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqsero2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/seqsero2 |
seqsero2 |
SeqSero2 |
rapid and improved Salmonella serotype determination using whole genome sequencing data | SeqSero-Salmonella Serotyping by Whole Genome Sequencing | Salmonella Serotyping by Whole Genome Sequencing | Online version: http://www.denglab.info/SeqSero2 | Salmonella serotype prediction from genome sequencing data | Citation: SeqSero, Zhang et al. 2015; SeqSero2, Zhang et al. 2019 | Salmonella serotype derterminants databases | Upon executing the command, a directory named 'SeqSero_result_Time_your_run' will be created. Your result will be stored in 'SeqSero_result.txt' in that directory. And the assembled alleles can also be found in the directory if using "-m a" (allele mode) |
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
74 |
74 |
13134 |
13134 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
13134 |
13134 |
74 |
74 |
https://usegalaxy.eu/published/workflow?id=fde21b5f5c169114, https://workflowhub.eu/workflows/407?version=1 |
|
|
seqtk |
seqtk_comp, seqtk_cutN, seqtk_dropse, seqtk_fqchk, seqtk_hety, seqtk_listhet, seqtk_mergefa, seqtk_mergepe, seqtk_mutfa, seqtk_randbase, seqtk_sample, seqtk_seq, seqtk_subseq, seqtk_telo, seqtk_trimfq |
Toolkit for processing sequences in FASTA/Q formats |
2015-01-13 |
https://github.com/lh3/seqtk |
1.5 |
seqtk |
1.5 |
Up-to-date |
Sequence Analysis |
Data handling, Sequence file editing |
Data handling, Sequence file editing |
Data management |
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/seqtk |
seqtk |
seqtk |
A tool for processing sequences in the FASTA or FASTQ format. It parses both FASTA and FASTQ files which can also be optionally compressed by gzip. |
|
15 |
15 |
15 |
15 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
15 |
0 |
14 |
0 |
0 |
0 |
0 |
0 |
15 |
0 |
0 |
0 |
0 |
15 |
15 |
14 |
14 |
641 |
665 |
148593 |
150608 |
830 |
923 |
103334 |
112294 |
221 |
221 |
156492 |
156492 |
35 |
35 |
18259 |
18259 |
437653 |
426678 |
1844 |
1727 |
https://dev.workflowhub.eu/workflows/1099?version=1, https://dev.workflowhub.eu/workflows/1116?version=1, https://dev.workflowhub.eu/workflows/1132?version=2, https://dev.workflowhub.eu/workflows/1197?version=2, https://dev.workflowhub.eu/workflows/1276?version=2, https://dev.workflowhub.eu/workflows/1287?version=2, https://dev.workflowhub.eu/workflows/1292?version=2, https://dev.workflowhub.eu/workflows/1307?version=1, https://usegalaxy.eu/published/workflow?id=1ce406de61de8492, https://usegalaxy.eu/published/workflow?id=2880a32a52d27743, https://usegalaxy.eu/published/workflow?id=2e93613c688ea52e, https://usegalaxy.eu/published/workflow?id=309969a261189b5f, https://usegalaxy.eu/published/workflow?id=38f12705279b5dfa, https://usegalaxy.eu/published/workflow?id=3cf3dd9727b7ac92, https://usegalaxy.eu/published/workflow?id=52cb9bacc26b013e, https://usegalaxy.eu/published/workflow?id=5f29105e842716db, https://usegalaxy.eu/published/workflow?id=83a1b8949d87e3da, https://usegalaxy.eu/published/workflow?id=8f747dbff3216993, https://usegalaxy.eu/published/workflow?id=93d1035a307fe63d, https://usegalaxy.eu/published/workflow?id=a15dabcadb63b46d, https://usegalaxy.eu/published/workflow?id=aada0111f835ce49, https://usegalaxy.eu/published/workflow?id=c789ab71876c6ead, https://usegalaxy.eu/published/workflow?id=cc2bc81352d2e2cd, https://usegalaxy.eu/published/workflow?id=cd25f70f71683ab6, https://usegalaxy.eu/published/workflow?id=ce5c16ac23c4fbb1, https://usegalaxy.eu/published/workflow?id=d2f75f70c33394ee, https://usegalaxy.eu/published/workflow?id=e14b81a8c0b1b7a4, https://usegalaxy.eu/published/workflow?id=efb58bba65393347, https://usegalaxy.fr/published/workflow?id=41264142d3c00016, https://usegalaxy.fr/published/workflow?id=8b1678200a1d157a, https://usegalaxy.org.au/published/workflow?id=324c683a8e2fa5b0, https://usegalaxy.org.au/published/workflow?id=462beb964c99619d, https://usegalaxy.org.au/published/workflow?id=5cfea39918e8632d, https://usegalaxy.org.au/published/workflow?id=79ca45e45d76871f, https://usegalaxy.org.au/published/workflow?id=9c60b83feaa22415, https://usegalaxy.org.au/published/workflow?id=b59fada651043735, https://usegalaxy.org.au/published/workflow?id=fc3c83b11f527977, https://usegalaxy.org/published/workflow?id=1518c8c50747a1c1, https://usegalaxy.org/published/workflow?id=1ddabc7d272dc702, https://usegalaxy.org/published/workflow?id=3269026bb1e0ec42, https://usegalaxy.org/published/workflow?id=33d90e718ce500ef, https://usegalaxy.org/published/workflow?id=34f3aac3aed0f97a, https://usegalaxy.org/published/workflow?id=35c2626849348f2c, https://usegalaxy.org/published/workflow?id=51f936d1a4e849fa, https://usegalaxy.org/published/workflow?id=69514a75e4c9af08, https://usegalaxy.org/published/workflow?id=7610b7797d71993a, https://usegalaxy.org/published/workflow?id=97263f3308077ff0, https://usegalaxy.org/published/workflow?id=cdea4f88ccbd155f, https://usegalaxy.org/published/workflow?id=eb4f7dbca0114270, https://workflowhub.eu/workflows/1260?version=2, https://workflowhub.eu/workflows/1327?version=6, https://workflowhub.eu/workflows/1480?version=1, https://workflowhub.eu/workflows/1612?version=1, https://workflowhub.eu/workflows/1616?version=1, https://workflowhub.eu/workflows/1629?version=1, https://workflowhub.eu/workflows/1630?version=1, https://workflowhub.eu/workflows/1631?version=1, https://workflowhub.eu/workflows/1635?version=1, https://workflowhub.eu/workflows/1653?version=1, https://workflowhub.eu/workflows/517?version=1, https://workflowhub.eu/workflows/518?version=1, https://workflowhub.eu/workflows/880?version=1 |
assembly/assembly-with-preprocessing, assembly/metagenomics-assembly, contributing/create-new-tutorial, microbiome/metagenomics-assembly, sequence-analysis/Manage_AB1_Sanger, sequence-analysis/human-reads-removal, variant-analysis/aiv-analysis |
|
sequali |
sequali |
Fast sequencing data quality metrics for short and long reads |
2025-03-19 |
https://sequali.readthedocs.io/ |
1.0.1 |
sequali |
1.0.1 |
Up-to-date |
Fastq Manipulation |
Sequencing quality control, Statistical calculation |
Sequencing quality control, Statistical calculation |
Data quality management, Sequence analysis |
Data quality management, Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/sequali |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/sequali |
sequali |
Sequali |
Fast sequencing data quality metrics |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
seqwish |
seqwish |
Alignment to variation graph inducer |
2020-04-06 |
https://github.com/ekg/seqwish |
0.7.5 |
seqwish |
0.7.11 |
To update |
Sequence Analysis, Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqwish/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/seqwish |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
2 |
2 |
271 |
271 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
271 |
271 |
2 |
2 |
https://usegalaxy.eu/published/workflow?id=9ba580ba8b01db40 |
|
|
seurat |
seurat_create, seurat_data, seurat_integrate, seurat_clustering, seurat_preprocessing, seurat_plot, seurat_reduce_dimension |
Seurat - R toolkit for single cell genomics |
2018-08-20 |
https://satijalab.org/seurat/ |
5.0 |
r-seurat |
3.0.2 |
To update |
Single Cell, Transcriptomics, Sequence Analysis |
|
|
RNA-Seq, Transcriptomics |
RNA-Seq, Transcriptomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/seurat_v5 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/seurat |
seurat |
Seurat |
Seurat is an R package designed for QC, analysis, and exploration of single-cell RNA-seq data. Seurat aims to enable users to identify and interpret sources of heterogeneity from single-cell transcriptomic measurements, and to integrate diverse types of single-cell data. |
|
7 |
7 |
7 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
44 |
44 |
2188 |
2188 |
53 |
53 |
655 |
655 |
2 |
2 |
96 |
96 |
2 |
2 |
28 |
28 |
2967 |
2967 |
101 |
101 |
https://dev.workflowhub.eu/workflows/1375?version=1, https://dev.workflowhub.eu/workflows/1388?version=1, https://dev.workflowhub.eu/workflows/1389?version=1, https://usegalaxy.eu/published/workflow?id=10c5d0560b977a6f, https://usegalaxy.eu/published/workflow?id=26deb6f2521742ea, https://usegalaxy.eu/published/workflow?id=290373b2f5fb8c6c, https://usegalaxy.eu/published/workflow?id=c52e8b5ab3e8e958, https://usegalaxy.eu/published/workflow?id=d773cbc76253afbf, https://usegalaxy.org/published/workflow?id=59554bfcad77e307, https://workflowhub.eu/workflows/1555?version=1, https://workflowhub.eu/workflows/1560?version=1, https://workflowhub.eu/workflows/1570?version=1 |
single-cell/scrna-case_FilterPlotandExplore_SeuratTools, single-cell/scrna-seurat-pbmc3k |
|
sfold |
sfold |
Predict the probable RNA secondary structures through structure ensemble sampling |
2024-10-09 |
https://github.com/Ding-RNA-Lab/Sfold |
2.2.0 |
|
|
To update |
RNA |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/sfold |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/sfold |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
shasta |
shasta |
Fast de novo assembly of long read sequencing data |
2020-11-11 |
https://github.com/chanzuckerberg/shasta |
0.6.0 |
shasta |
0.14.0 |
To update |
Assembly, Nanopore |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/shasta |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/shasta |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
351 |
351 |
1166 |
1166 |
0 |
0 |
0 |
0 |
81 |
81 |
644 |
644 |
0 |
0 |
0 |
0 |
1810 |
1810 |
432 |
432 |
|
|
|
shorah_amplicon |
shorah_amplicon |
Reconstruct haplotypes using ShoRAH in amplicon mode |
2018-11-27 |
https://github.com/cbg-ethz/shorah/blob/master/README.md |
1.1.3 |
shorah |
1.99.2 |
To update |
Sequence Analysis |
Haplotype mapping, Variant calling |
Haplotype mapping, Variant calling |
Metagenomics, Sequencing, Genetics |
Metagenomics, Sequencing, Genetics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/shorah |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/shorah |
shorah |
ShoRAH |
Inference of a population from a set of short reads. The package contains programs that support mapping of reads to a reference genome, correcting sequencing errors by locally clustering reads in small windows of the alignment, reconstructing a minimal set of global haplotypes that explain the reads, and estimating the frequencies of the inferred haplotypes. |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
shovill |
shovill |
Faster de novo assembly pipeline based around Spades |
2017-10-24 |
https://github.com/tseemann/shovill |
1.1.0 |
shovill |
1.1.0 |
Up-to-date |
Assembly |
Genome assembly |
Genome assembly |
Genomics, Microbiology, Sequence assembly |
Genomics, Microbiology, Sequence assembly |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/shovill |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/shovill |
shovill |
shovill |
Shovill is a pipeline for assembly of bacterial isolate genomes from Illumina paired-end reads. Shovill uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Megahit, so you can take advantage of the pre- and post-processing the Shovill provides with those too. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
2671 |
2807 |
52210 |
55759 |
4558 |
4565 |
48711 |
48739 |
1186 |
1354 |
22742 |
25911 |
68 |
68 |
4582 |
4582 |
134991 |
128245 |
8794 |
8483 |
https://dev.workflowhub.eu/workflows/1135?version=2, https://usegalaxy.eu/published/workflow?id=0404013d5c27210d, https://usegalaxy.eu/published/workflow?id=309fc4fc2e0da89c, https://usegalaxy.eu/published/workflow?id=3303a04887a47675, https://usegalaxy.eu/published/workflow?id=3d937648809ca4e7, https://usegalaxy.eu/published/workflow?id=4216424f032c055f, https://usegalaxy.eu/published/workflow?id=42c0da2e86318b37, https://usegalaxy.eu/published/workflow?id=4f245ac304ab76d9, https://usegalaxy.eu/published/workflow?id=628062a8cf93261f, https://usegalaxy.eu/published/workflow?id=723e718f37e9ab91, https://usegalaxy.eu/published/workflow?id=7aa32aba3fde0708, https://usegalaxy.eu/published/workflow?id=7e48134082dab0a3, https://usegalaxy.eu/published/workflow?id=94c3d329c31c712f, https://usegalaxy.eu/published/workflow?id=b5ffba506152b1a1, https://usegalaxy.eu/published/workflow?id=b93333efdab316d8, https://usegalaxy.eu/published/workflow?id=cbe3769f1abb9fa5, https://usegalaxy.eu/published/workflow?id=e532d98f4b368666, https://usegalaxy.eu/published/workflow?id=fca458178b3c794a, https://usegalaxy.eu/published/workflow?id=fde21b5f5c169114, https://usegalaxy.org.au/published/workflow?id=52065a4100b11184, https://usegalaxy.org.au/published/workflow?id=7a0c4804e4d4c905, https://usegalaxy.org.au/published/workflow?id=92fcdd490831c6c5, https://usegalaxy.org.au/published/workflow?id=d78f885b4b86635f, https://usegalaxy.org.au/published/workflow?id=f2541030f6d70b59, https://usegalaxy.org.au/published/workflow?id=fa76b66785ce38b8, https://usegalaxy.org/published/workflow?id=0e30324072570abb, https://usegalaxy.org/published/workflow?id=4161cfd67ed94b5d, https://usegalaxy.org/published/workflow?id=4d1279007d0137fa, https://usegalaxy.org/published/workflow?id=524602abe59b18f7, https://usegalaxy.org/published/workflow?id=5cd56232e873beab, https://usegalaxy.org/published/workflow?id=9ac1e4efe310b3b3, https://usegalaxy.org/published/workflow?id=9e5c5ddb60a24889, https://usegalaxy.org/published/workflow?id=c454c930ccfb0d3f, https://usegalaxy.org/published/workflow?id=d4f0a7ccb09f1e55, https://usegalaxy.org/published/workflow?id=db08887d7d6dc147, https://usegalaxy.org/published/workflow?id=e75bd7d392e65209, https://usegalaxy.org/published/workflow?id=f4d623a19b32370e, https://workflowhub.eu/workflows/100?version=1, https://workflowhub.eu/workflows/102?version=1, https://workflowhub.eu/workflows/103?version=1, https://workflowhub.eu/workflows/1043?version=9, https://workflowhub.eu/workflows/1189?version=2, https://workflowhub.eu/workflows/1602?version=1, https://workflowhub.eu/workflows/1767?version=1, https://workflowhub.eu/workflows/407?version=1, https://workflowhub.eu/workflows/470?version=1 |
assembly/mrsa-illumina |
|
sickle |
sickle |
A windowed adaptive trimming tool for FASTQ files using quality |
2015-11-03 |
https://github.com/najoshi/sickle |
1.33.3 |
sickle-trim |
1.33 |
To update |
Fastq Manipulation, Sequence Analysis |
Sequence trimming |
Sequence trimming |
Data quality management |
Data quality management |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/sickle |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/sickle |
sickle |
sickle |
A tool that uses sliding windows along with quality and length thresholds to determine when quality is sufficiently low to trim the 3'-end of reads and also determines when the quality is sufficiently high enough to trim the 5'-end of reads. |
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
565 |
645 |
18545 |
19406 |
1210 |
1213 |
11345 |
11349 |
0 |
0 |
0 |
0 |
103 |
104 |
948 |
1006 |
31761 |
30838 |
1962 |
1878 |
https://usegalaxy.eu/published/workflow?id=b6eb5fe7e37f680a, https://usegalaxy.fr/published/workflow?id=334189184455d9a2, https://usegalaxy.fr/published/workflow?id=74b4d11c07f7f0a4, https://usegalaxy.org/published/workflow?id=fca70e1bf761c6a2 |
|
|
simpleweather |
simple_weather |
provides simple weather in text format |
2016-07-19 |
http://wttr.in/ |
0.1.2 |
curl |
|
To update |
Visualization, Web Services |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/weather_app |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/weather_app |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
simtext |
abstracts_by_pmids, pmids_to_pubtator_matrix, pubmed_by_queries, text_to_wordmatrix |
A text mining framework for interactive analysis and visualization of similarities among biomedical entities. |
2021-02-28 |
https://github.com/dlal-group/simtext |
0.0.2 |
r-argparse |
1.0.1 |
To update |
Text Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tools/simtext |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/simtext |
|
|
|
|
0 |
2 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
32 |
32 |
234 |
234 |
0 |
0 |
0 |
0 |
5 |
5 |
500 |
500 |
0 |
0 |
0 |
0 |
734 |
734 |
37 |
37 |
https://dev.workflowhub.eu/workflows/1310?version=1, https://workflowhub.eu/workflows/1603?version=1 |
statistics/text-mining_simtext |
|
sina |
sina |
SINA reference based multiple sequence alignment |
2019-10-11 |
https://sina.readthedocs.io/en/latest/ |
1.7.2 |
sina |
1.7.2 |
Up-to-date |
Sequence Analysis |
Sequence alignment analysis, Multiple sequence alignment, Taxonomic classification, Structure-based sequence alignment |
Sequence alignment analysis, Multiple sequence alignment, Taxonomic classification, Structure-based sequence alignment |
Sequencing, RNA, Nucleic acid structure analysis, Taxonomy, Sequence analysis, Taxonomy |
Sequencing, RNA, Nucleic acid structure analysis, Taxonomy, Sequence analysis, Taxonomy |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/sina |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/sina |
sina |
SINA |
Aligns and optionally taxonomically classifies your rRNA gene sequences.Reference based multiple sequence alignment |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
129 |
132 |
1388 |
1442 |
438 |
439 |
2449 |
2452 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3894 |
3837 |
571 |
567 |
|
|
|
sinto |
sinto_barcode, sinto_fragments |
Sinto single-cell analysis tools |
2023-04-12 |
https://github.com/timoast/sinto |
0.10.1 |
sinto |
0.10.1 |
Up-to-date |
Single Cell, Epigenetics |
|
|
Bioinformatics, Cell biology |
Bioinformatics, Cell biology |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/sinto |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/sinto |
sinto |
sinto |
Sinto is a toolkit for processing aligned single-cell data. |
|
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
45 |
45 |
332 |
332 |
27 |
27 |
211 |
211 |
1 |
1 |
90 |
90 |
0 |
0 |
0 |
0 |
633 |
633 |
73 |
73 |
https://dev.workflowhub.eu/workflows/1012?version=1, https://dev.workflowhub.eu/workflows/1208?version=1, https://workflowhub.eu/workflows/1506?version=1 |
single-cell/scatac-preprocessing-tenx |
|
slamdunk |
alleyoop, slamdunk |
Slamdunk maps and quantifies SLAMseq reads |
2018-10-05 |
http://t-neumann.github.io/slamdunk |
0.4.3 |
slamdunk |
0.4.3 |
Up-to-date |
RNA, Transcriptomics, Sequence Analysis, Next Gen Mappers |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/slamdunk |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/slamdunk |
|
|
|
|
2 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
8 |
10 |
241 |
362 |
55 |
55 |
1166 |
1166 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1528 |
1407 |
65 |
63 |
|
|
|
sleuth |
sleuth |
Sleuth is a program for differential analysis of RNA-Seq data. |
2023-05-30 |
https://github.com/pachterlab/sleuth |
0.30.2 |
r-sleuth |
0.30.2 |
Up-to-date |
Transcriptomics, RNA, Statistics |
Expression data visualisation, Differential gene expression analysis, Gene expression profiling, Statistical calculation |
Expression data visualisation, Differential gene expression analysis, Gene expression profiling, Statistical calculation |
RNA-Seq, Gene expression, Statistics and probability |
RNA-Seq, Gene expression, Statistics and probability |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/sleuth |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/sleuth |
sleuth |
sleuth |
A statistical model and software application for RNA-seq differential expression analysis. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
34 |
34 |
181 |
181 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
181 |
181 |
34 |
34 |
|
|
|
smallgenomeutilities |
smgu_frameshift_deletions_checks |
Set of utilities for manipulating small viral genome data. |
2023-05-30 |
https://github.com/cbg-ethz/smallgenomeutilities |
0.5.2 |
smallgenomeutilities |
0.5.2 |
Up-to-date |
Sequence Analysis |
Read pre-processing, Sequence alignment, Genetic variation analysis |
Read pre-processing, Sequence alignment, Genetic variation analysis |
Genomics, Population genetics, Workflows, Virology, Sequencing |
Genomics, Population genetics, Workflows, Virology, Sequencing |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/smallgenomeutilities |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/smallgenomeutilities |
v-pipe |
V-pipe |
Bioinformatics pipeline for the analysis of next-generation sequencing data derived from intra-host viral populations. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
9 |
9 |
159 |
159 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
159 |
159 |
9 |
9 |
|
|
|
smudgeplot |
smudgeplot |
Inference of ploidy and heterozygosity structure using whole genome sequencing |
2022-06-30 |
https://github.com/KamilSJaron/smudgeplot |
0.2.5 |
smudgeplot |
0.4.0 |
To update |
Assembly |
Sequence trimming, Genotyping, k-mer counting |
Sequence trimming, Genotyping, k-mer counting |
Sequence assembly, Genetic variation, Mathematics |
Sequence assembly, Genetic variation, Mathematics |
galaxy-australia |
https://github.com/galaxyproject/tools-iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/smudgeplot |
smudgeplots |
Smudgeplots |
Reference-free profiling of polyploid genomes | Inference of ploidy and heterozygosity structure using whole genome sequencing data | Smudgeplots are computed from raw or even better from trimmed reads and show the haplotype structure using heterozygous kmer pairs. For example: | This tool extracts heterozygous kmer pairs from kmer dump files and performs gymnastics with them. We are able to disentangle genome structure by comparing the sum of kmer pair coverages (CovA + CovB) to their relative coverage (CovA / (CovA + CovB)). Such an approach also allows us to analyze obscure genomes with duplications, various ploidy levels, etc | GenomeScope 2.0 and Smudgeplots: Reference-free profiling of polyploid genomes Timothy Rhyker Ranallo-Benavidez, Kamil S. Jaron, Michael C. Schatz bioRxiv 747568; doi: https://doi.org/10.1101/747568 |
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
95 |
95 |
516 |
516 |
68 |
68 |
180 |
180 |
69 |
69 |
1064 |
1064 |
0 |
0 |
0 |
0 |
1760 |
1760 |
232 |
232 |
https://dev.workflowhub.eu/workflows/1127?version=3, https://usegalaxy.eu/published/workflow?id=bc32937d505135ab, https://workflowhub.eu/workflows/1103?version=3, https://workflowhub.eu/workflows/1104?version=2, https://workflowhub.eu/workflows/1641?version=1, https://workflowhub.eu/workflows/603?version=2, https://workflowhub.eu/workflows/698?version=1 |
assembly/ERGA-post-assembly-QC |
|
snap |
snap, snap_training |
SNAP is a general purpose gene finding program suitable for both eukaryotic and prokaryotic genomes. |
2017-10-12 |
https://github.com/KorfLab/SNAP |
2013_11_29 |
snap |
2013_11_29 |
Up-to-date |
Sequence Analysis |
Gene prediction |
Gene prediction |
DNA, DNA polymorphism, Genetics |
DNA polymorphism, Genetics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/snap |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/snap |
snap |
SNAP |
The Semi-HMM-based Nucleic Acid Parser is a gene prediction tool. |
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
332 |
374 |
1482 |
1705 |
265 |
265 |
837 |
837 |
91 |
91 |
522 |
522 |
0 |
0 |
0 |
0 |
3064 |
2841 |
730 |
688 |
https://dev.workflowhub.eu/workflows/1164?version=2, https://usegalaxy.eu/published/workflow?id=26ad77bc07a7e512, https://usegalaxy.eu/published/workflow?id=6ca20e710f4f3ffb, https://usegalaxy.org.au/published/workflow?id=7e40485d1ed45b7c, https://workflowhub.eu/workflows/1504?version=1 |
genome-annotation/annotation-with-maker |
|
snapatac2 |
snapatac2_clustering, snapatac2_peaks_and_motif, snapatac2_plotting, snapatac2_preprocessing |
SnapATAC2 – A Python/Rust package for single-cell epigenomics analysis |
2024-05-16 |
https://kzhang.org/SnapATAC2/ |
2.6.4 |
|
|
To update |
Single Cell, Epigenetics |
Essential dynamics, Dimensionality reduction, Gene expression profiling |
Essential dynamics, Dimensionality reduction, Gene expression profiling |
Epigenomics, Cell biology, Chromosome conformation capture, Mapping, Sequencing |
Epigenomics, Cell biology, Chromosome conformation capture, Mapping, Sequencing |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/snapatac2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/snapatac2 |
snapatac |
SnapATAC |
SnapATAC (Single Nucleus Analysis Pipeline for ATAC-seq) is a fast, accurate and comprehensive method for analyzing single cell ATAC-seq datasets. |
|
4 |
4 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 |
7 |
1983 |
1983 |
10 |
10 |
41 |
41 |
1 |
1 |
817 |
817 |
0 |
0 |
0 |
0 |
2841 |
2841 |
18 |
18 |
https://dev.workflowhub.eu/workflows/1343?version=2, https://usegalaxy.eu/published/workflow?id=15cb6b690d23e6ef, https://usegalaxy.eu/published/workflow?id=d20fbb95f15386f5, https://usegalaxy.eu/published/workflow?id=e4e969e9943cdaa5, https://workflowhub.eu/workflows/1077?version=1, https://workflowhub.eu/workflows/1078?version=1, https://workflowhub.eu/workflows/1089?version=1, https://workflowhub.eu/workflows/1551?version=1, https://workflowhub.eu/workflows/1561?version=1 |
single-cell/scatac-batch-correction-snapatac2, single-cell/scatac-standard-processing-snapatac2 |
|
sniffles |
sniffles |
Galaxy wrapper for sniffles |
2020-08-29 |
https://github.com/fritzsedlazeck/Sniffles |
2.5.2 |
sniffles |
2.6.3 |
To update |
Sequence Analysis |
Sequence analysis, Structural variation detection |
Sequence analysis, Structural variation detection |
DNA structural variation, Sequencing |
Sequencing |
iuc |
https://github.com/galaxyproject/tools-iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/sniffles |
sniffles |
Sniffles |
An algorithm for structural variation detection from third generation sequencing alignment. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
165 |
165 |
1459 |
1459 |
199 |
199 |
1213 |
1213 |
93 |
93 |
2457 |
2457 |
4 |
4 |
11 |
11 |
5140 |
5140 |
461 |
461 |
https://usegalaxy.eu/published/workflow?id=2880a32a52d27743, https://usegalaxy.eu/published/workflow?id=35a9136ddf37d589, https://usegalaxy.eu/published/workflow?id=cb54883452a73019, https://usegalaxy.eu/published/workflow?id=df08e520ec3dbcb7, https://usegalaxy.org.au/published/workflow?id=4871f853090e8be8, https://usegalaxy.org.au/published/workflow?id=d69a765cfc82a399 |
|
|
snipit |
snipit |
Summarise snps relative to a reference sequence |
2022-07-17 |
https://github.com/aineniamh/snipit |
1.6 |
snipit |
1.6 |
Up-to-date |
Variant Analysis, Sequence Analysis |
Base position variability plotting |
Base position variability plotting |
Virology |
Virology |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/snipit |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/snipit |
snipit |
snipit |
Summarise snps relative to a reference sequence |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
51 |
51 |
1039 |
1039 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1039 |
1039 |
51 |
51 |
https://usegalaxy.eu/published/workflow?id=a15dabcadb63b46d, https://usegalaxy.eu/published/workflow?id=c789ab71876c6ead, https://usegalaxy.eu/published/workflow?id=cd25f70f71683ab6, https://usegalaxy.org/published/workflow?id=1518c8c50747a1c1, https://usegalaxy.org/published/workflow?id=97263f3308077ff0, https://workflowhub.eu/workflows/1260?version=2 |
|
|
snippy |
snippy_core, snippy, snippy_clean_full_aln |
Contains the snippy tool for characterising microbial snps |
2017-07-13 |
https://github.com/tseemann/snippy |
|
snippy |
4.6.0 |
To update |
Sequence Analysis |
Phylogenetic tree visualisation, Phylogenetic tree generation, Variant calling |
Phylogenetic tree visualisation, Variant calling |
Genomics, Model organisms, DNA polymorphism, Phylogenetics |
Genomics, Model organisms, DNA polymorphism, Phylogenetics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/snippy |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/snippy |
snippy |
snippy |
Rapid haploid variant calling and core SNP phylogeny generation. |
|
3 |
3 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
3 |
0 |
2902 |
3174 |
133997 |
139604 |
3571 |
3620 |
112614 |
113142 |
2116 |
2578 |
54757 |
60816 |
35 |
35 |
1918 |
1918 |
315480 |
303286 |
9407 |
8624 |
https://dev.workflowhub.eu/workflows/1008?version=1, https://dev.workflowhub.eu/workflows/1069?version=2, https://dev.workflowhub.eu/workflows/1093?version=2, https://dev.workflowhub.eu/workflows/121?version=1, https://dev.workflowhub.eu/workflows/1305?version=2, https://usegalaxy.eu/published/workflow?id=2b25eaebd3987612, https://usegalaxy.eu/published/workflow?id=2c79eee5ca5a3b09, https://usegalaxy.eu/published/workflow?id=309fc4fc2e0da89c, https://usegalaxy.eu/published/workflow?id=3a8fde248a4d0383, https://usegalaxy.eu/published/workflow?id=3ff4dbcc7a602e6b, https://usegalaxy.eu/published/workflow?id=461d71caea871db8, https://usegalaxy.eu/published/workflow?id=464b642261ed7452, https://usegalaxy.eu/published/workflow?id=515ef1601bc24a6c, https://usegalaxy.eu/published/workflow?id=628062a8cf93261f, https://usegalaxy.eu/published/workflow?id=65249196143d7930, https://usegalaxy.eu/published/workflow?id=6d87481be47902e1, https://usegalaxy.eu/published/workflow?id=920aab45ff028ed4, https://usegalaxy.eu/published/workflow?id=94c3d329c31c712f, https://usegalaxy.eu/published/workflow?id=968f0ac2617aa524, https://usegalaxy.eu/published/workflow?id=a183da6b56cd1d60, https://usegalaxy.eu/published/workflow?id=b681f7b677b23168, https://usegalaxy.eu/published/workflow?id=c38e3ac59d8b86d6, https://usegalaxy.eu/published/workflow?id=c9ef2d2ce92e2dfb, https://usegalaxy.eu/published/workflow?id=fde21b5f5c169114, https://usegalaxy.org.au/published/workflow?id=1719e0eb54b41f68, https://usegalaxy.org.au/published/workflow?id=5693811cd933d2a2, https://usegalaxy.org.au/published/workflow?id=a61d4bda54de7cd1, https://usegalaxy.org.au/published/workflow?id=fa76b66785ce38b8, https://usegalaxy.org/published/workflow?id=5674956f5c18b85b, https://usegalaxy.org/published/workflow?id=d4f0a7ccb09f1e55, https://usegalaxy.org/published/workflow?id=e7ce46762faccaac, https://usegalaxy.org/published/workflow?id=ee4679b3e9e830b7, https://workflowhub.eu/workflows/1035?version=1, https://workflowhub.eu/workflows/1573?version=1, https://workflowhub.eu/workflows/1639?version=1, https://workflowhub.eu/workflows/1647?version=1 |
evolution/mtb_transmission, variant-analysis/microbial-variants, variant-analysis/tb-variant-analysis |
|
snp_dists |
snp_dists |
Compute pairwise SNP distance matrix from a FASTA sequence alignment |
2019-10-18 |
https://github.com/tseemann/snp-dists |
0.8.2 |
snp-dists |
0.8.2 |
Up-to-date |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/snp-dists |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/snp-dists |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
937 |
939 |
7877 |
7933 |
238 |
238 |
6107 |
6107 |
204 |
204 |
1353 |
1353 |
0 |
0 |
0 |
0 |
15393 |
15337 |
1381 |
1379 |
https://dev.workflowhub.eu/workflows/1009?version=1, https://dev.workflowhub.eu/workflows/1309?version=2, https://usegalaxy.eu/published/workflow?id=2b25eaebd3987612, https://usegalaxy.eu/published/workflow?id=2ebf65efe8ca4a7f, https://usegalaxy.eu/published/workflow?id=461d71caea871db8, https://usegalaxy.eu/published/workflow?id=628062a8cf93261f, https://usegalaxy.eu/published/workflow?id=6d333ed886aab471, https://usegalaxy.eu/published/workflow?id=8a248dda0131e8ad, https://usegalaxy.eu/published/workflow?id=94c3d329c31c712f, https://usegalaxy.eu/published/workflow?id=c38e3ac59d8b86d6, https://usegalaxy.eu/published/workflow?id=d5cf994c03a60fa4, https://usegalaxy.eu/published/workflow?id=e97b938ca4723827, https://usegalaxy.org/published/workflow?id=d4f0a7ccb09f1e55, https://workflowhub.eu/workflows/1569?version=1 |
evolution/mtb_transmission |
|
snp_sites |
snp_sites |
Finds SNP sites from a multi-FASTA alignment file |
2017-06-28 |
https://github.com/sanger-pathogens/snp-sites |
2.5.1 |
snp-sites |
2.5.1 |
Up-to-date |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/snp-sites |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/snp-sites |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
766 |
770 |
7626 |
7710 |
333 |
333 |
1981 |
1981 |
134 |
134 |
1794 |
1794 |
0 |
0 |
0 |
0 |
11485 |
11401 |
1237 |
1233 |
https://dev.workflowhub.eu/workflows/1009?version=1, https://dev.workflowhub.eu/workflows/1309?version=2, https://usegalaxy.eu/published/workflow?id=2b25eaebd3987612, https://usegalaxy.eu/published/workflow?id=2ebf65efe8ca4a7f, https://usegalaxy.eu/published/workflow?id=461d71caea871db8, https://usegalaxy.eu/published/workflow?id=6d333ed886aab471, https://usegalaxy.eu/published/workflow?id=8a248dda0131e8ad, https://usegalaxy.eu/published/workflow?id=c38e3ac59d8b86d6, https://workflowhub.eu/workflows/1569?version=1 |
evolution/mtb_transmission |
|
snpeff |
snpEff, snpEff_build_gb, snpEff_databases, snpEff_download, snpEff_get_chr_names |
SnpEff is a genetic variant annotation and effect prediction toolbox |
2014-11-11 |
http://snpeff.sourceforge.net/ |
5.2 |
biopython |
1.70 |
To update |
Genome-Wide Association Study, Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/snpeff |
|
|
|
|
5 |
5 |
5 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
5 |
5 |
0 |
0 |
0 |
0 |
0 |
5 |
0 |
0 |
0 |
0 |
5 |
5 |
5 |
0 |
5220 |
5823 |
117010 |
122981 |
9096 |
13547 |
121063 |
191088 |
1159 |
1342 |
13252 |
14899 |
394 |
394 |
3881 |
3902 |
332870 |
255206 |
21106 |
15869 |
https://dev.workflowhub.eu/workflows/1063?version=1, https://dev.workflowhub.eu/workflows/1081?version=1, https://dev.workflowhub.eu/workflows/1096?version=2, https://dev.workflowhub.eu/workflows/1104?version=1, https://dev.workflowhub.eu/workflows/1108?version=1, https://dev.workflowhub.eu/workflows/1114?version=1, https://dev.workflowhub.eu/workflows/41?version=1, https://usegalaxy.eu/published/workflow?id=0882300f7b399587, https://usegalaxy.eu/published/workflow?id=112422839b68db02, https://usegalaxy.eu/published/workflow?id=1c5588d6ac7f773f, https://usegalaxy.eu/published/workflow?id=220961d803697f54, https://usegalaxy.eu/published/workflow?id=2aede5c6577b28f5, https://usegalaxy.eu/published/workflow?id=2b25eaebd3987612, https://usegalaxy.eu/published/workflow?id=2f1ee01aeee2b9f0, https://usegalaxy.eu/published/workflow?id=35629b113a6f23ab, https://usegalaxy.eu/published/workflow?id=3570835f21365be7, https://usegalaxy.eu/published/workflow?id=36a4646959829018, https://usegalaxy.eu/published/workflow?id=461d71caea871db8, https://usegalaxy.eu/published/workflow?id=462582bbc236cb7b, https://usegalaxy.eu/published/workflow?id=4a89ddab941c6819, https://usegalaxy.eu/published/workflow?id=4f62794453f65cba, https://usegalaxy.eu/published/workflow?id=58cc9091bb0bd18f, https://usegalaxy.eu/published/workflow?id=606a04c4aa95d010, https://usegalaxy.eu/published/workflow?id=614807d57979554c, https://usegalaxy.eu/published/workflow?id=64db3c75eb7aac38, https://usegalaxy.eu/published/workflow?id=6ed1016dfdf9f928, https://usegalaxy.eu/published/workflow?id=7a9f2b7263f2ea57, https://usegalaxy.eu/published/workflow?id=7cc253b53379b727, https://usegalaxy.eu/published/workflow?id=827e476f6195ac69, https://usegalaxy.eu/published/workflow?id=83049910e2cd5128, https://usegalaxy.eu/published/workflow?id=8483717d51fde024, https://usegalaxy.eu/published/workflow?id=88064e2231165fd2, https://usegalaxy.eu/published/workflow?id=99022559adf01c4a, https://usegalaxy.eu/published/workflow?id=9eda857e4141d56e, https://usegalaxy.eu/published/workflow?id=a2d4221ad117c378, https://usegalaxy.eu/published/workflow?id=a4e3667f6879bfaf, https://usegalaxy.eu/published/workflow?id=ad609d1a3de251f5, https://usegalaxy.eu/published/workflow?id=b02d90c32dc67730, https://usegalaxy.eu/published/workflow?id=b3b094f1bdbaa04a, https://usegalaxy.eu/published/workflow?id=b3c0eba755f269b2, https://usegalaxy.eu/published/workflow?id=b82a4065be048ef6, https://usegalaxy.eu/published/workflow?id=c084c2009f6b2d0a, https://usegalaxy.eu/published/workflow?id=c38e3ac59d8b86d6, https://usegalaxy.eu/published/workflow?id=cd3398e29f375d97, https://usegalaxy.eu/published/workflow?id=cd926dd6b70e72d6, https://usegalaxy.eu/published/workflow?id=ecd1cf44f3bd2ed5, https://usegalaxy.eu/published/workflow?id=ff2fd4a4bb27d859, https://usegalaxy.eu/published/workflow?id=ffe93ec81afefd09, https://usegalaxy.fr/published/workflow?id=e96cd8dd62fa0ff8, https://usegalaxy.org.au/published/workflow?id=06ba34da322f46f1, https://usegalaxy.org.au/published/workflow?id=0f48060aa1bd41a5, https://usegalaxy.org.au/published/workflow?id=1be22b394f9ec3ab, https://usegalaxy.org.au/published/workflow?id=25403321a649a92b, https://usegalaxy.org.au/published/workflow?id=39b464084d930a33, https://usegalaxy.org.au/published/workflow?id=3d5deed70ac9bde4, https://usegalaxy.org.au/published/workflow?id=3f39cf407c185724, https://usegalaxy.org.au/published/workflow?id=46f352c70356184a, https://usegalaxy.org.au/published/workflow?id=4cbc70a37a9da088, https://usegalaxy.org.au/published/workflow?id=5442f0437ade82c4, https://usegalaxy.org.au/published/workflow?id=738c0e8227519c25, https://usegalaxy.org.au/published/workflow?id=79f4bdf9aab7c256, https://usegalaxy.org.au/published/workflow?id=83c20d8e5fd97313, https://usegalaxy.org.au/published/workflow?id=84c98a23187d2a36, https://usegalaxy.org.au/published/workflow?id=8b955274ca3ca3dc, https://usegalaxy.org.au/published/workflow?id=ac89c2d51c32cc9c, https://usegalaxy.org.au/published/workflow?id=c38b998d3e90c329, https://usegalaxy.org.au/published/workflow?id=e66306b1006d010b, https://usegalaxy.org/published/workflow?id=0017c434354b6f6a, https://usegalaxy.org/published/workflow?id=005924662f68a480, https://usegalaxy.org/published/workflow?id=049e6609da2b67c4, https://usegalaxy.org/published/workflow?id=0558fabfff88ee59, https://usegalaxy.org/published/workflow?id=055eb85c8ecf0ca3, https://usegalaxy.org/published/workflow?id=0596162a499b4074, https://usegalaxy.org/published/workflow?id=05bf642dc7c58c40, https://usegalaxy.org/published/workflow?id=0660a00407fc16a1, https://usegalaxy.org/published/workflow?id=06d6dcd2655592af, https://usegalaxy.org/published/workflow?id=0843c6f15eae2f15, https://usegalaxy.org/published/workflow?id=08f58af7b6cc0ab6, https://usegalaxy.org/published/workflow?id=0c6dbb2ef5eee5b9, https://usegalaxy.org/published/workflow?id=0cbab8b7044d24f9, https://usegalaxy.org/published/workflow?id=165c8a58baffe64c, https://usegalaxy.org/published/workflow?id=17a7ff756d37a437, https://usegalaxy.org/published/workflow?id=18c6e87a884fb5ed, https://usegalaxy.org/published/workflow?id=1b57987895f8ca9e, https://usegalaxy.org/published/workflow?id=1deaf458d6d8695a, https://usegalaxy.org/published/workflow?id=1fdd58f4b7a6f643, https://usegalaxy.org/published/workflow?id=23212ae74fc2d2b5, https://usegalaxy.org/published/workflow?id=23c4e801213eee50, https://usegalaxy.org/published/workflow?id=2497103d279cd20e, https://usegalaxy.org/published/workflow?id=2524e026f069e885, https://usegalaxy.org/published/workflow?id=2644a8c0da3066c5, https://usegalaxy.org/published/workflow?id=28abac549697f65a, https://usegalaxy.org/published/workflow?id=2af3de32c630e1b4, https://usegalaxy.org/published/workflow?id=2b3970d9b28810a1, https://usegalaxy.org/published/workflow?id=2d30be556aab1f52, https://usegalaxy.org/published/workflow?id=2e65bc5f9d9f2a75, https://usegalaxy.org/published/workflow?id=33ae58f05e5e1d60, https://usegalaxy.org/published/workflow?id=34ab5572a9547bfe, https://usegalaxy.org/published/workflow?id=371b242d97f2f030, https://usegalaxy.org/published/workflow?id=3a4940e05e8420da, https://usegalaxy.org/published/workflow?id=3bed12ef73ba93bf, https://usegalaxy.org/published/workflow?id=4054ceeba1a2fa69, https://usegalaxy.org/published/workflow?id=414fa13b613b33d8, https://usegalaxy.org/published/workflow?id=415c7152cb78e86f, https://usegalaxy.org/published/workflow?id=41bbf3cd893d400a, https://usegalaxy.org/published/workflow?id=43861b38cf6e927e, https://usegalaxy.org/published/workflow?id=449a419bcfd3c49e, https://usegalaxy.org/published/workflow?id=46e4acdc08eb3ea5, https://usegalaxy.org/published/workflow?id=470b41d0e43bb46b, https://usegalaxy.org/published/workflow?id=48963532e030de6c, https://usegalaxy.org/published/workflow?id=496b0e8a0e5a4191, https://usegalaxy.org/published/workflow?id=4a5730954d776cb2, https://usegalaxy.org/published/workflow?id=4d0607d3589e0775, https://usegalaxy.org/published/workflow?id=4d251ecda59c87c5, https://usegalaxy.org/published/workflow?id=4dbac8374419d29e, https://usegalaxy.org/published/workflow?id=4de095b92ed661ac, https://usegalaxy.org/published/workflow?id=4ed9f54caa932479, https://usegalaxy.org/published/workflow?id=50206b10de958d03, https://usegalaxy.org/published/workflow?id=5415e85a86898e41, https://usegalaxy.org/published/workflow?id=57726b39bbfb0c54, https://usegalaxy.org/published/workflow?id=57cfc1b5d9ea0d72, https://usegalaxy.org/published/workflow?id=5cad854edbbd3b69, https://usegalaxy.org/published/workflow?id=60e999ef3dcff4ca, https://usegalaxy.org/published/workflow?id=6822f413a3b09cb4, https://usegalaxy.org/published/workflow?id=695d20ef3ee4cf1e, https://usegalaxy.org/published/workflow?id=6be2c7930c391b35, https://usegalaxy.org/published/workflow?id=6d68f56abf9c624d, https://usegalaxy.org/published/workflow?id=6d8f0be547b12528, https://usegalaxy.org/published/workflow?id=6ec8b101d24a0f4f, https://usegalaxy.org/published/workflow?id=6f436066dffbc37d, https://usegalaxy.org/published/workflow?id=70dacee3da375e2b, https://usegalaxy.org/published/workflow?id=7203eb3b663bca11, https://usegalaxy.org/published/workflow?id=7610b7797d71993a, https://usegalaxy.org/published/workflow?id=76247065c01f01d1, https://usegalaxy.org/published/workflow?id=78db135e2aa5789d, https://usegalaxy.org/published/workflow?id=7965d84a9f71da93, https://usegalaxy.org/published/workflow?id=7a2b4675c758f34e, https://usegalaxy.org/published/workflow?id=7c3faadda8f89749, https://usegalaxy.org/published/workflow?id=7c5e8394ce29288d, https://usegalaxy.org/published/workflow?id=7d6617b8316cee19, https://usegalaxy.org/published/workflow?id=7decdde67868ed0f, https://usegalaxy.org/published/workflow?id=83fbcdf3e29c41d0, https://usegalaxy.org/published/workflow?id=840a7be198dc8ae4, https://usegalaxy.org/published/workflow?id=884ee0057bde9135, https://usegalaxy.org/published/workflow?id=89660361d4121fa8, https://usegalaxy.org/published/workflow?id=8b08a05c5926dd0f, https://usegalaxy.org/published/workflow?id=8c1516493c55bf7d, https://usegalaxy.org/published/workflow?id=8caea3788657235d, https://usegalaxy.org/published/workflow?id=916a116b69ac5eeb, https://usegalaxy.org/published/workflow?id=953d9cbe05e632a8, https://usegalaxy.org/published/workflow?id=9d626a89800a96ca, https://usegalaxy.org/published/workflow?id=9e487f763daa66c0, https://usegalaxy.org/published/workflow?id=a0451d7084d7732b, https://usegalaxy.org/published/workflow?id=a4f7af1e2cd826c3, https://usegalaxy.org/published/workflow?id=a824952a04335e5b, https://usegalaxy.org/published/workflow?id=ab6e4277fc825c5d, https://usegalaxy.org/published/workflow?id=ab8590a0ee1b9951, https://usegalaxy.org/published/workflow?id=ae83fb92e697e009, https://usegalaxy.org/published/workflow?id=b1004c9974ceb785, https://usegalaxy.org/published/workflow?id=b1a98a2d5ebda1c5, https://usegalaxy.org/published/workflow?id=b1cd3f793187d667, https://usegalaxy.org/published/workflow?id=b26501a4a85bfdeb, https://usegalaxy.org/published/workflow?id=b33ad2032a655706, https://usegalaxy.org/published/workflow?id=b4dda054d2cf15b7, https://usegalaxy.org/published/workflow?id=b50f2446d5e60334, https://usegalaxy.org/published/workflow?id=b6d90898e2db6aba, https://usegalaxy.org/published/workflow?id=b72edafe11293d93, https://usegalaxy.org/published/workflow?id=b8804291f2754fc8, https://usegalaxy.org/published/workflow?id=b9e6ddbc79904844, https://usegalaxy.org/published/workflow?id=ba347b695dbff2ea, https://usegalaxy.org/published/workflow?id=ba405b449e27ba37, https://usegalaxy.org/published/workflow?id=bb16936081b820f6, https://usegalaxy.org/published/workflow?id=bceb6ae418bef9b8, https://usegalaxy.org/published/workflow?id=bd00c8a7a3b7e5be, https://usegalaxy.org/published/workflow?id=bfd3ba54576d2d81, https://usegalaxy.org/published/workflow?id=bfee1238c70627cb, https://usegalaxy.org/published/workflow?id=c337e5265a8079d0, https://usegalaxy.org/published/workflow?id=c4aaf11b0cb6e5ac, https://usegalaxy.org/published/workflow?id=c57c820557ae9b55, https://usegalaxy.org/published/workflow?id=c75fcf2b7ba057fd, https://usegalaxy.org/published/workflow?id=cb03300161109123, https://usegalaxy.org/published/workflow?id=cb153c8d1685de3b, https://usegalaxy.org/published/workflow?id=ced446bf2428497b, https://usegalaxy.org/published/workflow?id=cf8c6f7742b4f3e6, https://usegalaxy.org/published/workflow?id=d3c2a2622c4499f7, https://usegalaxy.org/published/workflow?id=d3eae9943ce2a62b, https://usegalaxy.org/published/workflow?id=d817e98cef94bc96, https://usegalaxy.org/published/workflow?id=d85f8ef78040fbb1, https://usegalaxy.org/published/workflow?id=db8443163482a2e0, https://usegalaxy.org/published/workflow?id=de2861cdbd4e29ce, https://usegalaxy.org/published/workflow?id=dfa8c64634aec75c, https://usegalaxy.org/published/workflow?id=e35ac40c58953f74, https://usegalaxy.org/published/workflow?id=e57d595b0cde1614, https://usegalaxy.org/published/workflow?id=e67b6da41e1e6932, https://usegalaxy.org/published/workflow?id=e67db5dc8eab60f3, https://usegalaxy.org/published/workflow?id=e6a6223ef5ef85a7, https://usegalaxy.org/published/workflow?id=e7586d70715207b5, https://usegalaxy.org/published/workflow?id=e77c09c72dfaa9a4, https://usegalaxy.org/published/workflow?id=ea817818a6de77e0, https://usegalaxy.org/published/workflow?id=ebbcdc389aad0eb8, https://usegalaxy.org/published/workflow?id=f0feca8af9aeddba, https://usegalaxy.org/published/workflow?id=f302d673420a9bdd, https://usegalaxy.org/published/workflow?id=f3983646b6df24bf, https://usegalaxy.org/published/workflow?id=f3aba99a8204081e, https://usegalaxy.org/published/workflow?id=f3ed710e251833a7, https://usegalaxy.org/published/workflow?id=f5805e66642fed04, https://usegalaxy.org/published/workflow?id=f60818a405f1bbbd, https://usegalaxy.org/published/workflow?id=f63f7a0a33a83841, https://usegalaxy.org/published/workflow?id=f88f186bc851e954, https://usegalaxy.org/published/workflow?id=fae519dcba6bfc72, https://usegalaxy.org/published/workflow?id=ffae9c47980a5170, https://workflowhub.eu/workflows/1190?version=1, https://workflowhub.eu/workflows/1636?version=1, https://workflowhub.eu/workflows/1655?version=1, https://workflowhub.eu/workflows/1668?version=1, https://workflowhub.eu/workflows/1672?version=1, https://workflowhub.eu/workflows/1678?version=1, https://workflowhub.eu/workflows/1682?version=1, https://workflowhub.eu/workflows/353?version=1, https://workflowhub.eu/workflows/357?version=1, https://workflowhub.eu/workflows/35?version=1, https://workflowhub.eu/workflows/363?version=2, https://workflowhub.eu/workflows/36?version=1 |
introduction/galaxy-intro-ngs-data-managment, variant-analysis/dip, variant-analysis/exome-seq, variant-analysis/mapping-by-sequencing, variant-analysis/somatic-variants, variant-analysis/trio-analysis |
|
snpeff_sars_cov_2 |
snpeff_sars_cov_2 |
SnpEff, the COVID-19 version, is a genetic variant annotation and effect prediction toolbox |
2020-06-17 |
http://snpeff.sourceforge.net/ |
|
|
|
To update |
Genome-Wide Association Study, Variant Analysis |
SNP detection |
SNP detection |
DNA polymorphism, Genetic variation, Nucleic acid sites, features and motifs |
DNA polymorphism, Nucleic acid sites, features and motifs |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/snpeff-covid19 |
snpeff |
snpEff |
Variant annotation and effect prediction tool. It annotates and predicts the effects of variants on genes and proteins (such as amino acid changes). |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1524 |
1524 |
765977 |
765977 |
1758 |
1758 |
97025 |
97025 |
589 |
589 |
32159 |
32159 |
28 |
28 |
3377 |
3377 |
898538 |
898538 |
3899 |
3899 |
https://dev.workflowhub.eu/workflows/1074?version=2, https://dev.workflowhub.eu/workflows/1115?version=2, https://dev.workflowhub.eu/workflows/143?version=1, https://dev.workflowhub.eu/workflows/144?version=1, https://dev.workflowhub.eu/workflows/145?version=1, https://dev.workflowhub.eu/workflows/146?version=1, https://dev.workflowhub.eu/workflows/195?version=2, https://dev.workflowhub.eu/workflows/196?version=2, https://dev.workflowhub.eu/workflows/197?version=2, https://dev.workflowhub.eu/workflows/198?version=2, https://usegalaxy.eu/published/workflow?id=0189bab68f828d86, https://usegalaxy.eu/published/workflow?id=03d1d2e0dc6e2024, https://usegalaxy.eu/published/workflow?id=0599f049e4697839, https://usegalaxy.eu/published/workflow?id=07b74e4cf53cb633, https://usegalaxy.eu/published/workflow?id=0be293debca8fb9b, https://usegalaxy.eu/published/workflow?id=0e5b701ed5ca69a7, https://usegalaxy.eu/published/workflow?id=0f6a7bd5362e4a2b, https://usegalaxy.eu/published/workflow?id=1761092d0e7deece, https://usegalaxy.eu/published/workflow?id=2573209308aaad23, https://usegalaxy.eu/published/workflow?id=2a39dbc8fc6dd5d3, https://usegalaxy.eu/published/workflow?id=2d9d4445a1871230, https://usegalaxy.eu/published/workflow?id=429ae28a178cd07c, https://usegalaxy.eu/published/workflow?id=476db04368d5e90c, https://usegalaxy.eu/published/workflow?id=4a764275d4bf9f31, https://usegalaxy.eu/published/workflow?id=4b4bfc79205d83f1, https://usegalaxy.eu/published/workflow?id=4c75ab0be3c56494, https://usegalaxy.eu/published/workflow?id=4d97068a725c975c, https://usegalaxy.eu/published/workflow?id=529f30e894beacc2, https://usegalaxy.eu/published/workflow?id=52bdf400f97c5770, https://usegalaxy.eu/published/workflow?id=53de0e742573e588, https://usegalaxy.eu/published/workflow?id=57769c948e14f9ac, https://usegalaxy.eu/published/workflow?id=579dd1e95e76402f, https://usegalaxy.eu/published/workflow?id=5c15f251642bfa1f, https://usegalaxy.eu/published/workflow?id=6be946c7ec91835e, https://usegalaxy.eu/published/workflow?id=6dbac47941a804da, https://usegalaxy.eu/published/workflow?id=74f19aff1b9cdd6b, https://usegalaxy.eu/published/workflow?id=7b7ef222ac4f9887, https://usegalaxy.eu/published/workflow?id=7bdd9ad918edab0b, https://usegalaxy.eu/published/workflow?id=7ef7b460143211df, https://usegalaxy.eu/published/workflow?id=81122d30c64a52a6, https://usegalaxy.eu/published/workflow?id=9feebfc6c34da287, https://usegalaxy.eu/published/workflow?id=a6f4371ef9bc1aab, https://usegalaxy.eu/published/workflow?id=a9e1a6b90dbd2518, https://usegalaxy.eu/published/workflow?id=b97532c398b821a2, https://usegalaxy.eu/published/workflow?id=c2af7a5dbfb5b023, https://usegalaxy.eu/published/workflow?id=ed20bd120064bab0, https://usegalaxy.eu/published/workflow?id=ee6dc47660540ba6, https://usegalaxy.eu/published/workflow?id=f54b4d76f7f9a589, https://usegalaxy.eu/published/workflow?id=fc216dfb0ec9ed41, https://usegalaxy.eu/published/workflow?id=fcf745185d6e0ea4, https://usegalaxy.fr/published/workflow?id=2345fad7dac13daa, https://usegalaxy.fr/published/workflow?id=54b48eeeed3564dd, https://usegalaxy.fr/published/workflow?id=57b5a45c9f71a09c, https://usegalaxy.fr/published/workflow?id=591c57173e259ca6, https://usegalaxy.fr/published/workflow?id=61235264d5d2f666, https://usegalaxy.fr/published/workflow?id=727cfdb7c79287d1, https://usegalaxy.fr/published/workflow?id=7d27dd394b921846, https://usegalaxy.fr/published/workflow?id=98529cff0ef36b91, https://usegalaxy.fr/published/workflow?id=bffee40c87c7b20a, https://usegalaxy.fr/published/workflow?id=ca0bd0e42cb774f9, https://usegalaxy.fr/published/workflow?id=d0d12c0b80c286f9, https://usegalaxy.fr/published/workflow?id=e0b225d4b2556365, https://usegalaxy.fr/published/workflow?id=e3c04a30258421aa, https://usegalaxy.org.au/published/workflow?id=094a545d44ce28cc, https://usegalaxy.org.au/published/workflow?id=0c6f7bfc826433c4, https://usegalaxy.org.au/published/workflow?id=1dd4392c51766383, https://usegalaxy.org.au/published/workflow?id=27205feb28b0ce06, https://usegalaxy.org.au/published/workflow?id=2b2ce7e1206d177d, https://usegalaxy.org.au/published/workflow?id=30a601039d24e2eb, https://usegalaxy.org.au/published/workflow?id=31dbd313e5c8160b, https://usegalaxy.org.au/published/workflow?id=3223ceaa2b58d940, https://usegalaxy.org.au/published/workflow?id=3c657dd766d02f6a, https://usegalaxy.org.au/published/workflow?id=3c7b55daae7c119b, https://usegalaxy.org.au/published/workflow?id=41bd0340dcde60ec, https://usegalaxy.org.au/published/workflow?id=47ce6a2d30887637, https://usegalaxy.org.au/published/workflow?id=48a60965b6b3ff54, https://usegalaxy.org.au/published/workflow?id=4bc8ac41ecff7daf, https://usegalaxy.org.au/published/workflow?id=51b745f8c964e5c6, https://usegalaxy.org.au/published/workflow?id=6a04c54236f30e8d, https://usegalaxy.org.au/published/workflow?id=7563b3ef697a69fd, https://usegalaxy.org.au/published/workflow?id=76bb6bde19975e05, https://usegalaxy.org.au/published/workflow?id=7fd58f5fc93f414e, https://usegalaxy.org.au/published/workflow?id=810242a3dc4f6170, https://usegalaxy.org.au/published/workflow?id=888eb87b62c4e6dd, https://usegalaxy.org.au/published/workflow?id=888f8377eb6eabf2, https://usegalaxy.org.au/published/workflow?id=932bad88f8dc8d33, https://usegalaxy.org.au/published/workflow?id=a29670ff0ecb1a38, https://usegalaxy.org.au/published/workflow?id=ae894cff1d1aba01, https://usegalaxy.org.au/published/workflow?id=ba30cc4a84c449f9, https://usegalaxy.org.au/published/workflow?id=ba7a9d4c857d26b7, https://usegalaxy.org.au/published/workflow?id=baa763dbdf6afb71, https://usegalaxy.org.au/published/workflow?id=bcf230e526632064, https://usegalaxy.org.au/published/workflow?id=bd1cf22d47389742, https://usegalaxy.org.au/published/workflow?id=be9213411c520096, https://usegalaxy.org.au/published/workflow?id=c1ce3f2ae7c81c3e, https://usegalaxy.org.au/published/workflow?id=c9156ca3df2b595c, https://usegalaxy.org.au/published/workflow?id=ca7fc6e2adbf1f26, https://usegalaxy.org.au/published/workflow?id=d3521c05077192df, https://usegalaxy.org.au/published/workflow?id=d35d05be576e8b13, https://usegalaxy.org.au/published/workflow?id=d7c329b354f4426d, https://usegalaxy.org.au/published/workflow?id=e439a0e17a90d24c, https://usegalaxy.org.au/published/workflow?id=fe4e34a407157389, https://usegalaxy.org.au/published/workflow?id=fe5542c99cdc57ce, https://usegalaxy.org.au/published/workflow?id=fedf2874752ac1f6, https://usegalaxy.org/published/workflow?id=0f8b4fd0bf276968, https://usegalaxy.org/published/workflow?id=0fa2ce12c2874b1d, https://usegalaxy.org/published/workflow?id=10c2136973c88d8a, https://usegalaxy.org/published/workflow?id=15a0e22570f71098, https://usegalaxy.org/published/workflow?id=195f7acb16c5a2e2, https://usegalaxy.org/published/workflow?id=26b35874b9e32355, https://usegalaxy.org/published/workflow?id=4357180d40560019, https://usegalaxy.org/published/workflow?id=4b41a8247f52c463, https://usegalaxy.org/published/workflow?id=4cf8cc42e97b2da6, https://usegalaxy.org/published/workflow?id=53dda64a5a6ebd54, https://usegalaxy.org/published/workflow?id=5a610d5a42d50cf3, https://usegalaxy.org/published/workflow?id=5b3e2ddf525da25d, https://usegalaxy.org/published/workflow?id=5bcd1aade71a8035, https://usegalaxy.org/published/workflow?id=612452c925d723b7, https://usegalaxy.org/published/workflow?id=62436fe121e035e7, https://usegalaxy.org/published/workflow?id=6b11d738ee57f245, https://usegalaxy.org/published/workflow?id=786aa9e2bd723629, https://usegalaxy.org/published/workflow?id=7dde0721a382ea3e, https://usegalaxy.org/published/workflow?id=7e2651e5ed17e3db, https://usegalaxy.org/published/workflow?id=88d0b64011c3148c, https://usegalaxy.org/published/workflow?id=8b81b9a3b49bbf98, https://usegalaxy.org/published/workflow?id=98b2ac8fc75781f8, https://usegalaxy.org/published/workflow?id=9adf8691809326e5, https://usegalaxy.org/published/workflow?id=9fc9f1db50019929, https://usegalaxy.org/published/workflow?id=b34ba9b2e4d8f050, https://usegalaxy.org/published/workflow?id=bbe6f5a45ea5ee5e, https://usegalaxy.org/published/workflow?id=bd355e8ce58a139e, https://usegalaxy.org/published/workflow?id=bf3ccae8d5b6ef58, https://usegalaxy.org/published/workflow?id=c092a3631d68ce38, https://usegalaxy.org/published/workflow?id=c12e6b7896f8e114, https://usegalaxy.org/published/workflow?id=c7b2d2ccc4b0dec5, https://usegalaxy.org/published/workflow?id=cf2dbc29ca20ebee, https://usegalaxy.org/published/workflow?id=d3428dd172a78102, https://usegalaxy.org/published/workflow?id=d4ea6cdd40522eb1, https://usegalaxy.org/published/workflow?id=d96bd5c9fb553f2c, https://usegalaxy.org/published/workflow?id=db01ac5b0dc50cd4, https://usegalaxy.org/published/workflow?id=e282f505ba9f729f, https://workflowhub.eu/workflows/110?version=11, https://workflowhub.eu/workflows/111?version=5, https://workflowhub.eu/workflows/112?version=6, https://workflowhub.eu/workflows/113?version=4, https://workflowhub.eu/workflows/1540?version=1, https://workflowhub.eu/workflows/155?version=5, https://workflowhub.eu/workflows/1642?version=1, https://workflowhub.eu/workflows/519?version=1 |
galaxy-interface/ncbi-sarf, introduction/galaxy-intro-ngs-data-managment, variant-analysis/sars-cov-2 |
|
snpfreqplot |
snpfreqplot |
A plotting app to visualise the SNPs across a region |
2020-12-02 |
https://github.com/BrownfieldPlantLab/SNPFreqPlot |
1.0 |
r-base |
|
To update |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/snpfreqplot |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
364 |
364 |
3756 |
3756 |
474 |
474 |
1514 |
1514 |
97 |
97 |
1187 |
1187 |
9 |
9 |
321 |
321 |
6778 |
6778 |
944 |
944 |
https://dev.workflowhub.eu/workflows/199?version=2, https://usegalaxy.eu/published/workflow?id=036990ecf300a99f, https://usegalaxy.eu/published/workflow?id=05bd1d9c61df5d16, https://usegalaxy.eu/published/workflow?id=0c94260298199d8b, https://usegalaxy.eu/published/workflow?id=20592f292c205954, https://usegalaxy.eu/published/workflow?id=27fca972f1d1a312, https://usegalaxy.eu/published/workflow?id=2d509fad86eb97fb, https://usegalaxy.eu/published/workflow?id=37b04b02ec08e84f, https://usegalaxy.eu/published/workflow?id=70ec8b1719e25982, https://usegalaxy.eu/published/workflow?id=88f5cef7e4146520, https://usegalaxy.eu/published/workflow?id=9eb29cc96d8d75c2, https://usegalaxy.eu/published/workflow?id=eb03839cc36048f5, https://usegalaxy.fr/published/workflow?id=798c8ff19825ab2c, https://usegalaxy.fr/published/workflow?id=b168a179d1b456cb, https://usegalaxy.org.au/published/workflow?id=1764bb1f506212e8, https://usegalaxy.org.au/published/workflow?id=1782d699b0166725, https://usegalaxy.org.au/published/workflow?id=5a975438c8752269, https://usegalaxy.org.au/published/workflow?id=7a0b3968968c5994, https://usegalaxy.org.au/published/workflow?id=7cc2b5010c56f117, https://usegalaxy.org.au/published/workflow?id=800d28ec61b15244, https://usegalaxy.org.au/published/workflow?id=8e2b94c6fbf44368, https://usegalaxy.org.au/published/workflow?id=989eb73372135796, https://usegalaxy.org.au/published/workflow?id=b601f48ecec15bf4, https://usegalaxy.org.au/published/workflow?id=b920b02a23f94d11, https://usegalaxy.org.au/published/workflow?id=d0d6743450e5060d, https://usegalaxy.org.au/published/workflow?id=fbc732db2a2821b0, https://usegalaxy.org/published/workflow?id=07e761b2501971c6, https://usegalaxy.org/published/workflow?id=2967ef82911f2cca, https://usegalaxy.org/published/workflow?id=2b09f3c9465ee054, https://usegalaxy.org/published/workflow?id=2dceaa255cc8cf83, https://usegalaxy.org/published/workflow?id=6c2bb2209aad5e44, https://usegalaxy.org/published/workflow?id=7af656b8ea5e7e2e, https://usegalaxy.org/published/workflow?id=8a01c78688beae1d, https://usegalaxy.org/published/workflow?id=dcbc71347300822d, https://usegalaxy.org/published/workflow?id=f58c90061c31bd48, https://usegalaxy.org/published/workflow?id=ff3ade25b35f4893, https://workflowhub.eu/workflows/109?version=9 |
|
|
snpsift |
snpSift_annotate, snpSift_caseControl, snpSift_extractFields, snpSift_filter, snpSift_int, snpSift_rmInfo, snpsift_vartype, snpSift_vcfCheck |
snpEff SnpSift tools from Pablo Cingolani |
2014-11-11 |
http://snpeff.sourceforge.net/SnpSift.html |
|
snpsift |
5.2 |
To update |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/snpsift/snpsift |
|
|
|
|
8 |
8 |
8 |
8 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8 |
0 |
0 |
0 |
0 |
8 |
0 |
0 |
0 |
0 |
0 |
8 |
0 |
0 |
0 |
0 |
8 |
8 |
8 |
0 |
1803 |
1830 |
5151189 |
5155984 |
3097 |
3861 |
390034 |
433393 |
473 |
477 |
104337 |
105650 |
27 |
27 |
10917 |
10917 |
5705944 |
5656477 |
6195 |
5400 |
https://dev.workflowhub.eu/workflows/1074?version=2, https://dev.workflowhub.eu/workflows/1083?version=1, https://dev.workflowhub.eu/workflows/1115?version=2, https://dev.workflowhub.eu/workflows/1293?version=1, https://dev.workflowhub.eu/workflows/1440?version=1, https://dev.workflowhub.eu/workflows/1441?version=1, https://dev.workflowhub.eu/workflows/194?version=2, https://dev.workflowhub.eu/workflows/199?version=2, https://dev.workflowhub.eu/workflows/41?version=1, https://usegalaxy.eu/published/workflow?id=036990ecf300a99f, https://usegalaxy.eu/published/workflow?id=05bd1d9c61df5d16, https://usegalaxy.eu/published/workflow?id=06544e74f583fd05, https://usegalaxy.eu/published/workflow?id=09c7069ae409c362, https://usegalaxy.eu/published/workflow?id=0c94260298199d8b, https://usegalaxy.eu/published/workflow?id=1c5588d6ac7f773f, https://usegalaxy.eu/published/workflow?id=1da86d74f8535f4e, https://usegalaxy.eu/published/workflow?id=20592f292c205954, https://usegalaxy.eu/published/workflow?id=21a39ac4c1becb31, https://usegalaxy.eu/published/workflow?id=2424282f793f0f1b, https://usegalaxy.eu/published/workflow?id=27fca972f1d1a312, https://usegalaxy.eu/published/workflow?id=2d509fad86eb97fb, https://usegalaxy.eu/published/workflow?id=2f1ee01aeee2b9f0, https://usegalaxy.eu/published/workflow?id=35629b113a6f23ab, https://usegalaxy.eu/published/workflow?id=37b04b02ec08e84f, https://usegalaxy.eu/published/workflow?id=3aaea772745ca295, https://usegalaxy.eu/published/workflow?id=3f0b104a74acf869, https://usegalaxy.eu/published/workflow?id=4a89ddab941c6819, https://usegalaxy.eu/published/workflow?id=4b4bfc79205d83f1, https://usegalaxy.eu/published/workflow?id=522500fac247be6f, https://usegalaxy.eu/published/workflow?id=52bdf400f97c5770, https://usegalaxy.eu/published/workflow?id=53de0e742573e588, https://usegalaxy.eu/published/workflow?id=54a4f76a5d736011, https://usegalaxy.eu/published/workflow?id=579dd1e95e76402f, https://usegalaxy.eu/published/workflow?id=58cc9091bb0bd18f, https://usegalaxy.eu/published/workflow?id=5ded4002e684a02c, https://usegalaxy.eu/published/workflow?id=5ed38d8114bcd6f7, https://usegalaxy.eu/published/workflow?id=60e0b2a28a900178, https://usegalaxy.eu/published/workflow?id=63eed9c2e025a723, https://usegalaxy.eu/published/workflow?id=64abcddeb516a712, https://usegalaxy.eu/published/workflow?id=64db3c75eb7aac38, https://usegalaxy.eu/published/workflow?id=6aa2891bd2b41f32, https://usegalaxy.eu/published/workflow?id=6c91fe92ef069d64, https://usegalaxy.eu/published/workflow?id=70ec8b1719e25982, https://usegalaxy.eu/published/workflow?id=7a9f2b7263f2ea57, https://usegalaxy.eu/published/workflow?id=7b7d6a5c6c65d74b, https://usegalaxy.eu/published/workflow?id=7cc253b53379b727, https://usegalaxy.eu/published/workflow?id=7ef7b460143211df, https://usegalaxy.eu/published/workflow?id=827e476f6195ac69, https://usegalaxy.eu/published/workflow?id=88064e2231165fd2, https://usegalaxy.eu/published/workflow?id=88f5cef7e4146520, https://usegalaxy.eu/published/workflow?id=99ad31bf3970ade4, https://usegalaxy.eu/published/workflow?id=9eb29cc96d8d75c2, https://usegalaxy.eu/published/workflow?id=a2d4221ad117c378, https://usegalaxy.eu/published/workflow?id=a4e3667f6879bfaf, https://usegalaxy.eu/published/workflow?id=ad609d1a3de251f5, https://usegalaxy.eu/published/workflow?id=b02d90c32dc67730, https://usegalaxy.eu/published/workflow?id=b8fc492025ad6ff0, https://usegalaxy.eu/published/workflow?id=c084c2009f6b2d0a, https://usegalaxy.eu/published/workflow?id=c832ecfa83bcda14, https://usegalaxy.eu/published/workflow?id=c992e77a6e8edcbd, https://usegalaxy.eu/published/workflow?id=c9f83ce86d407902, https://usegalaxy.eu/published/workflow?id=cdf2f02428f5f83f, https://usegalaxy.eu/published/workflow?id=ce1712139b4a4273, https://usegalaxy.eu/published/workflow?id=d215a2e554fd83bc, https://usegalaxy.eu/published/workflow?id=d52ff93f4ffdd981, https://usegalaxy.eu/published/workflow?id=eb03839cc36048f5, https://usegalaxy.eu/published/workflow?id=ecd1cf44f3bd2ed5, https://usegalaxy.eu/published/workflow?id=ee6dc47660540ba6, https://usegalaxy.eu/published/workflow?id=f97e6fe1fcbc53a7, https://usegalaxy.eu/published/workflow?id=fa670d951fc4f778, https://usegalaxy.eu/published/workflow?id=fcf745185d6e0ea4, https://usegalaxy.eu/published/workflow?id=ff2fd4a4bb27d859, https://usegalaxy.eu/published/workflow?id=ffe93ec81afefd09, https://usegalaxy.fr/published/workflow?id=0df61a88d64de252, https://usegalaxy.fr/published/workflow?id=798c8ff19825ab2c, https://usegalaxy.fr/published/workflow?id=a3e9062133fdf7c2, https://usegalaxy.fr/published/workflow?id=b168a179d1b456cb, https://usegalaxy.fr/published/workflow?id=bf8ffe72b7ce4570, https://usegalaxy.fr/published/workflow?id=d0d12c0b80c286f9, https://usegalaxy.fr/published/workflow?id=e96cd8dd62fa0ff8, https://usegalaxy.org.au/published/workflow?id=04c9266c6a863fab, https://usegalaxy.org.au/published/workflow?id=0e11619979c2830c, https://usegalaxy.org.au/published/workflow?id=1764bb1f506212e8, https://usegalaxy.org.au/published/workflow?id=1782d699b0166725, https://usegalaxy.org.au/published/workflow?id=244ea5e94237ebad, https://usegalaxy.org.au/published/workflow?id=2955ea7be1cdda29, https://usegalaxy.org.au/published/workflow?id=2b2ce7e1206d177d, https://usegalaxy.org.au/published/workflow?id=2b71eb1dc2aa28a1, https://usegalaxy.org.au/published/workflow?id=30a601039d24e2eb, https://usegalaxy.org.au/published/workflow?id=4b681937a01df465, https://usegalaxy.org.au/published/workflow?id=4cbc70a37a9da088, https://usegalaxy.org.au/published/workflow?id=51b745f8c964e5c6, https://usegalaxy.org.au/published/workflow?id=5a975438c8752269, https://usegalaxy.org.au/published/workflow?id=5cd7f1824db7a960, https://usegalaxy.org.au/published/workflow?id=61a21c9928182ae4, https://usegalaxy.org.au/published/workflow?id=6795e545b0cafded, https://usegalaxy.org.au/published/workflow?id=76a0a3af8de11622, https://usegalaxy.org.au/published/workflow?id=7a0b3968968c5994, https://usegalaxy.org.au/published/workflow?id=7cc2b5010c56f117, https://usegalaxy.org.au/published/workflow?id=800d28ec61b15244, https://usegalaxy.org.au/published/workflow?id=851552cc3e830253, https://usegalaxy.org.au/published/workflow?id=857e482acfcb2dba, https://usegalaxy.org.au/published/workflow?id=888eb87b62c4e6dd, https://usegalaxy.org.au/published/workflow?id=8e2b94c6fbf44368, https://usegalaxy.org.au/published/workflow?id=989eb73372135796, https://usegalaxy.org.au/published/workflow?id=a77ce877e786d44a, https://usegalaxy.org.au/published/workflow?id=b601f48ecec15bf4, https://usegalaxy.org.au/published/workflow?id=b920b02a23f94d11, https://usegalaxy.org.au/published/workflow?id=b9e82e3fae56d8b4, https://usegalaxy.org.au/published/workflow?id=c38b998d3e90c329, https://usegalaxy.org.au/published/workflow?id=c9156ca3df2b595c, https://usegalaxy.org.au/published/workflow?id=d0d6743450e5060d, https://usegalaxy.org.au/published/workflow?id=e154a9b605ea0886, https://usegalaxy.org.au/published/workflow?id=ebd1ee73906fdea0, https://usegalaxy.org.au/published/workflow?id=f65b54fcffaa11e5, https://usegalaxy.org.au/published/workflow?id=fbc732db2a2821b0, https://usegalaxy.org.au/published/workflow?id=fe5542c99cdc57ce, https://usegalaxy.org/published/workflow?id=0017c434354b6f6a, https://usegalaxy.org/published/workflow?id=005924662f68a480, https://usegalaxy.org/published/workflow?id=0392de36b6f55a8f, https://usegalaxy.org/published/workflow?id=055eb85c8ecf0ca3, https://usegalaxy.org/published/workflow?id=0596162a499b4074, https://usegalaxy.org/published/workflow?id=06d6dcd2655592af, https://usegalaxy.org/published/workflow?id=07e761b2501971c6, https://usegalaxy.org/published/workflow?id=165c8a58baffe64c, https://usegalaxy.org/published/workflow?id=18c6e87a884fb5ed, https://usegalaxy.org/published/workflow?id=1fdd58f4b7a6f643, https://usegalaxy.org/published/workflow?id=23c4e801213eee50, https://usegalaxy.org/published/workflow?id=26c4909f2f3df704, https://usegalaxy.org/published/workflow?id=28abac549697f65a, https://usegalaxy.org/published/workflow?id=2967ef82911f2cca, https://usegalaxy.org/published/workflow?id=29ba77708cdafe0f, https://usegalaxy.org/published/workflow?id=2af3de32c630e1b4, https://usegalaxy.org/published/workflow?id=2b09f3c9465ee054, https://usegalaxy.org/published/workflow?id=2b3970d9b28810a1, https://usegalaxy.org/published/workflow?id=2ceff2cf26eae4cd, https://usegalaxy.org/published/workflow?id=2dceaa255cc8cf83, https://usegalaxy.org/published/workflow?id=307d19833ffb5395, https://usegalaxy.org/published/workflow?id=31cc891be77cbc6f, https://usegalaxy.org/published/workflow?id=38911ba6f66d80f6, https://usegalaxy.org/published/workflow?id=3a4940e05e8420da, https://usegalaxy.org/published/workflow?id=3e703abaeb870f6f, https://usegalaxy.org/published/workflow?id=41bbf3cd893d400a, https://usegalaxy.org/published/workflow?id=449a419bcfd3c49e, https://usegalaxy.org/published/workflow?id=46e4acdc08eb3ea5, https://usegalaxy.org/published/workflow?id=470b41d0e43bb46b, https://usegalaxy.org/published/workflow?id=4a5730954d776cb2, https://usegalaxy.org/published/workflow?id=4de095b92ed661ac, https://usegalaxy.org/published/workflow?id=4ffdb2cf21759d26, https://usegalaxy.org/published/workflow?id=50206b10de958d03, https://usegalaxy.org/published/workflow?id=507c817755b2410d, https://usegalaxy.org/published/workflow?id=5415e85a86898e41, https://usegalaxy.org/published/workflow?id=5834e562fa403732, https://usegalaxy.org/published/workflow?id=5bcd1aade71a8035, https://usegalaxy.org/published/workflow?id=5cad854edbbd3b69, https://usegalaxy.org/published/workflow?id=60e999ef3dcff4ca, https://usegalaxy.org/published/workflow?id=612452c925d723b7, https://usegalaxy.org/published/workflow?id=62436fe121e035e7, https://usegalaxy.org/published/workflow?id=65f3a5772ae05a7a, https://usegalaxy.org/published/workflow?id=6ba03802169c0063, https://usegalaxy.org/published/workflow?id=6be2c7930c391b35, https://usegalaxy.org/published/workflow?id=6c2bb2209aad5e44, https://usegalaxy.org/published/workflow?id=6d778eeb176d563c, https://usegalaxy.org/published/workflow?id=6ec8b101d24a0f4f, https://usegalaxy.org/published/workflow?id=6f436066dffbc37d, https://usegalaxy.org/published/workflow?id=7203eb3b663bca11, https://usegalaxy.org/published/workflow?id=7965d84a9f71da93, https://usegalaxy.org/published/workflow?id=7a2b4675c758f34e, https://usegalaxy.org/published/workflow?id=7af656b8ea5e7e2e, https://usegalaxy.org/published/workflow?id=7b20a62d69d53efc, https://usegalaxy.org/published/workflow?id=7d6617b8316cee19, https://usegalaxy.org/published/workflow?id=7dde0721a382ea3e, https://usegalaxy.org/published/workflow?id=7e2651e5ed17e3db, https://usegalaxy.org/published/workflow?id=83fbcdf3e29c41d0, https://usegalaxy.org/published/workflow?id=884ee0057bde9135, https://usegalaxy.org/published/workflow?id=8a01c78688beae1d, https://usegalaxy.org/published/workflow?id=8b08a05c5926dd0f, https://usegalaxy.org/published/workflow?id=8c1516493c55bf7d, https://usegalaxy.org/published/workflow?id=8caea3788657235d, https://usegalaxy.org/published/workflow?id=916a116b69ac5eeb, https://usegalaxy.org/published/workflow?id=9d626a89800a96ca, https://usegalaxy.org/published/workflow?id=9e1762e46ddf9a85, https://usegalaxy.org/published/workflow?id=a4f7af1e2cd826c3, https://usegalaxy.org/published/workflow?id=aadccbe72752c129, https://usegalaxy.org/published/workflow?id=ae83fb92e697e009, https://usegalaxy.org/published/workflow?id=b1004c9974ceb785, https://usegalaxy.org/published/workflow?id=b26501a4a85bfdeb, https://usegalaxy.org/published/workflow?id=b34ba9b2e4d8f050, https://usegalaxy.org/published/workflow?id=b4dda054d2cf15b7, https://usegalaxy.org/published/workflow?id=b72edafe11293d93, https://usegalaxy.org/published/workflow?id=bb16936081b820f6, https://usegalaxy.org/published/workflow?id=bceb6ae418bef9b8, https://usegalaxy.org/published/workflow?id=c4aaf11b0cb6e5ac, https://usegalaxy.org/published/workflow?id=cb03300161109123, https://usegalaxy.org/published/workflow?id=cb810cdaa4915f4b, https://usegalaxy.org/published/workflow?id=cf2dbc29ca20ebee, https://usegalaxy.org/published/workflow?id=d136d24e4c96962a, https://usegalaxy.org/published/workflow?id=d3c2a2622c4499f7, https://usegalaxy.org/published/workflow?id=dcbc71347300822d, https://usegalaxy.org/published/workflow?id=dd4b22d90680beb0, https://usegalaxy.org/published/workflow?id=de2861cdbd4e29ce, https://usegalaxy.org/published/workflow?id=dfa8c64634aec75c, https://usegalaxy.org/published/workflow?id=e35ac40c58953f74, https://usegalaxy.org/published/workflow?id=e57d595b0cde1614, https://usegalaxy.org/published/workflow?id=ea817818a6de77e0, https://usegalaxy.org/published/workflow?id=f0feca8af9aeddba, https://usegalaxy.org/published/workflow?id=f3983646b6df24bf, https://usegalaxy.org/published/workflow?id=f3ed710e251833a7, https://usegalaxy.org/published/workflow?id=f5805e66642fed04, https://usegalaxy.org/published/workflow?id=f58c90061c31bd48, https://usegalaxy.org/published/workflow?id=f63f7a0a33a83841, https://usegalaxy.org/published/workflow?id=f7d1c6be4e4c3357, https://usegalaxy.org/published/workflow?id=fae519dcba6bfc72, https://usegalaxy.org/published/workflow?id=ff3ade25b35f4893, https://usegalaxy.org/published/workflow?id=ffae9c47980a5170, https://workflowhub.eu/workflows/1063?version=5, https://workflowhub.eu/workflows/109?version=9, https://workflowhub.eu/workflows/110?version=11, https://workflowhub.eu/workflows/1190?version=1, https://workflowhub.eu/workflows/138?version=9, https://workflowhub.eu/workflows/1391?version=1, https://workflowhub.eu/workflows/1479?version=1, https://workflowhub.eu/workflows/1540?version=1, https://workflowhub.eu/workflows/1642?version=1, https://workflowhub.eu/workflows/354?version=1, https://workflowhub.eu/workflows/356?version=1, https://workflowhub.eu/workflows/35?version=1, https://workflowhub.eu/workflows/36?version=1, https://workflowhub.eu/workflows/607?version=1, https://workflowhub.eu/workflows/629?version=1 |
galaxy-interface/collections, galaxy-interface/workflow-automation, introduction/galaxy-intro-ngs-data-managment, microbiome/pathogen-detection-from-nanopore-foodborne-data, variant-analysis/sars-cov-2 |
|
snpsift_dbnsfp |
snpSift_dbnsfp |
snpEff SnpSift dbnsfp tool from Pablo Cingolani |
2014-11-11 |
http://snpeff.sourceforge.net/SnpSift.html#dbNSFP |
|
snpsift |
5.2 |
To update |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift_dbnsfp |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/snpsift/snpsift_dbnsfp |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
23 |
24 |
52 |
55 |
75 |
75 |
423 |
423 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
478 |
475 |
99 |
98 |
|
|
|
snpsift_genesets |
snpSift_geneSets |
Annotate SnpEff vcf with genesets such as Gene Ontology (GO), KEGG, Reactome |
2014-11-11 |
http://snpeff.sourceforge.net/SnpSift.html#geneSets |
|
snpsift |
5.2 |
To update |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift_genesets/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/snpsift/snpsift_genesets |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
105 |
135 |
514 |
569 |
201 |
202 |
496 |
499 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1068 |
1010 |
337 |
306 |
|
|
|
socru |
socru |
Order and orientation of complete bacterial genomes |
2019-09-03 |
https://github.com/quadram-institute-bioscience/socru |
2.1.7 |
socru |
2.2.5 |
To update |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/socru |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
40 |
45 |
591 |
665 |
98 |
98 |
309 |
309 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
974 |
900 |
143 |
138 |
|
|
|
sonneityping |
sonneityping |
Scripts for parsing Mykrobe predict results for Shigella sonnei. |
2021-09-16 |
https://github.com/katholt/sonneityping |
20210201 |
sonneityping |
20210201 |
Up-to-date |
Sequence Analysis |
Antimicrobial resistance prediction, Variant calling, Genotyping |
Antimicrobial resistance prediction, Variant calling, Genotyping |
Whole genome sequencing, Genotype and phenotype, Genetic variation, Metagenomics |
Whole genome sequencing, Genotype and phenotype, Genetic variation, Metagenomics |
iuc |
https://github.com/katholt/sonneityping |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/sonneityping |
sonneityping |
sonneityping |
Scripts for parsing Mykrobe predict results for Shigella sonnei. |
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
|
|
|
spacexr |
spacexr_cside, spacexr_rctd |
Cell type identification and cell type-specific differential expression in spatial transcriptomics |
2024-08-02 |
https://github.com/dmcable/spacexr/tree/master |
2.2.1 |
r-spacexr |
2.2.1 |
Up-to-date |
Spatial Omics, Single Cell |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/spacexr |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/spacexr |
|
|
|
|
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
spades |
spades_biosyntheticspades, spades_coronaspades, spades_metaplasmidspades, metaspades, spades_metaviralspades, spades_plasmidspades, rnaspades, spades_rnaviralspades, spades |
SPAdes is an assembly toolkit containing various assembly pipelines. It implements the following 4 stages: assembly graph construction, k-bimer adjustment, construction of paired assembly graph and contig construction. |
2016-12-21 |
https://github.com/ablab/spades |
4.2.0 |
spades |
4.2.0 |
Up-to-date |
Assembly, RNA, Metagenomics |
Genome assembly |
Genome assembly |
Sequence assembly |
Sequence assembly |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/spades |
spades |
SPAdes |
St. Petersburg genome assembler – is intended for both standard isolates and single-cell MDA bacteria assemblies. SPAdes 3.9 works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio, Oxford Nanopore and Sanger reads. Additional contigs can be provided and can be used as long reads. |
|
9 |
9 |
9 |
9 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
3 |
8 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
0 |
0 |
3 |
9 |
3 |
0 |
6736 |
7107 |
91363 |
98738 |
12485 |
12501 |
135480 |
135565 |
4828 |
5911 |
58637 |
67930 |
319 |
320 |
2137 |
2184 |
304417 |
287617 |
25839 |
24368 |
https://dev.workflowhub.eu/workflows/1103?version=1, https://dev.workflowhub.eu/workflows/1120?version=1, https://dev.workflowhub.eu/workflows/1124?version=1, https://dev.workflowhub.eu/workflows/39?version=1, https://usegalaxy.eu/published/workflow?id=007ce6405d196df3, https://usegalaxy.eu/published/workflow?id=02631612a43a4d9b, https://usegalaxy.eu/published/workflow?id=1860e02bcb894a64, https://usegalaxy.eu/published/workflow?id=37da7b42cb063a3a, https://usegalaxy.eu/published/workflow?id=3f6c7249ef71ae41, https://usegalaxy.eu/published/workflow?id=49c46d7653d6c349, https://usegalaxy.eu/published/workflow?id=579ff83177c5ee09, https://usegalaxy.eu/published/workflow?id=62c47e3c9d4f3aa3, https://usegalaxy.eu/published/workflow?id=7b755497d168cb13, https://usegalaxy.eu/published/workflow?id=7ecd92cb382d8168, https://usegalaxy.eu/published/workflow?id=87231a6a7938cb95, https://usegalaxy.eu/published/workflow?id=8c7958cb05fba814, https://usegalaxy.eu/published/workflow?id=9382f9bbbdddb5ad, https://usegalaxy.eu/published/workflow?id=93d1035a307fe63d, https://usegalaxy.eu/published/workflow?id=98bfad0c684011e9, https://usegalaxy.eu/published/workflow?id=a8417c63e9e22afb, https://usegalaxy.eu/published/workflow?id=a847773b563b2328, https://usegalaxy.eu/published/workflow?id=bebcbd6f0ffa55c5, https://usegalaxy.eu/published/workflow?id=c702c76cadebac30, https://usegalaxy.eu/published/workflow?id=d2f75f70c33394ee, https://usegalaxy.eu/published/workflow?id=d4a95588e6e50893, https://usegalaxy.eu/published/workflow?id=db10c092fad70d69, https://usegalaxy.eu/published/workflow?id=ef83f7fd2176a244, https://usegalaxy.fr/published/workflow?id=5bb882218afda132, https://usegalaxy.org.au/published/workflow?id=38d992baf9a2a2bc, https://usegalaxy.org.au/published/workflow?id=39c724282ee008e3, https://usegalaxy.org.au/published/workflow?id=813a4938397cf6ee, https://usegalaxy.org.au/published/workflow?id=87cdeb05b1ebeab0, https://usegalaxy.org.au/published/workflow?id=8abcfe166f1a6cd8, https://usegalaxy.org.au/published/workflow?id=8f7d5ebead46a6d0, https://usegalaxy.org.au/published/workflow?id=914330feb75ea9ab, https://usegalaxy.org.au/published/workflow?id=fa76b66785ce38b8, https://usegalaxy.org/published/workflow?id=15cca0e249f40aea, https://usegalaxy.org/published/workflow?id=33d90e718ce500ef, https://usegalaxy.org/published/workflow?id=5039ae2c81d0aba8, https://usegalaxy.org/published/workflow?id=71f8a4090877f171, https://usegalaxy.org/published/workflow?id=7251c6e0dad8f927, https://usegalaxy.org/published/workflow?id=8a350e0d96e937a5, https://usegalaxy.org/published/workflow?id=8d229c0f58a07ebe, https://usegalaxy.org/published/workflow?id=ae81cc0e8263d03e, https://usegalaxy.org/published/workflow?id=e0c33057ac2670ba, https://usegalaxy.org/published/workflow?id=fb01e1a49793c8be, https://workflowhub.eu/workflows/1352?version=3, https://workflowhub.eu/workflows/1390?version=2, https://workflowhub.eu/workflows/1626?version=1, https://workflowhub.eu/workflows/1634?version=1, https://workflowhub.eu/workflows/434?version=1, https://workflowhub.eu/workflows/52?version=1, https://workflowhub.eu/workflows/68?version=1 |
assembly/debruijn-graph-assembly, assembly/metagenomics-assembly, microbiome/metagenomics-assembly |
|
spaln |
list_spaln_tables, spaln |
Spaln (space-efficient spliced alignment) maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence. |
2019-01-11 |
http://www.genome.ist.i.kyoto-u.ac.jp/~aln_user/spaln/ |
2.4.9 |
python |
|
To update |
Sequence Analysis, Genome annotation |
|
|
|
|
iuc |
https://github.com/ogotoh/spaln |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/spaln |
|
|
|
|
2 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
89 |
103 |
416 |
511 |
301 |
301 |
4400 |
4400 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4911 |
4816 |
404 |
390 |
|
|
|
spapros |
spapros_evaluation, spapros_selection |
Select and evaluate probe sets for targeted spatial transcriptomics. |
2024-08-25 |
https://github.com/theislab/spapros |
0.1.5 |
spapros |
0.1.5 |
Up-to-date |
Single Cell, Transcriptomics, Sequence Analysis |
Primer and probe design, Visualisation |
Primer and probe design, Visualisation |
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/spapros/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/spapros |
spapros |
spapros |
Spapros is a python package that provides a pipeline for probe set selection and evaluation for targeted spatial transcriptomics data. |
|
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
1 |
1 |
|
|
|
spotyping |
spotyping |
SpoTyping allows fast and accurate in silico Mycobacterium spoligotyping from sequence reads |
2018-05-07 |
https://github.com/xiaeryu/SpoTyping-v2.0 |
2.1 |
spotyping |
2.1 |
Up-to-date |
Sequence Analysis |
Variant pattern analysis |
Variant pattern analysis |
Microbiology, Sequencing, Sequence composition, complexity and repeats, Genetic variation |
Microbiology, Sequencing, Sequence composition, complexity and repeats, Genetic variation |
iuc |
https://github.com/xiaeryu/SpoTyping-v2.0/tree/master/SpoTyping-v2.0-commandLine |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/spotyping |
spotyping |
SpoTyping |
Fast and accurate in silico Mycobacterium spoligotyping from sequence reads. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
30 |
30 |
1884 |
1884 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1884 |
1884 |
30 |
30 |
|
|
|
spyboat |
spyboat |
Wavelet analysis for 3d-image stacks |
2020-11-28 |
http://github.com/tensionhead/spyboat |
0.1.2 |
spyboat |
|
To update |
Imaging, Graphics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/spyboat |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
5 |
5 |
154 |
154 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
154 |
154 |
5 |
5 |
|
|
|
squirrel |
squirrel_phylo, squirrel_qc |
QC and Phylogenetic analysis of MPXV |
2025-01-16 |
https://github.com/aineniamh/squirrel |
1.0.13 |
squirrel |
1.2.2 |
To update |
Phylogenetics |
Phylogenetic analysis, Sequencing quality control |
Phylogenetic analysis, Sequencing quality control |
Virology |
Virology |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/squirrel |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/squirrel |
squirrel |
squirrel |
Some QUIck Reconstruction to Resolve Evolutionary LinksSquirrel provides a rapid way of producing reliable alignments for MPXV and also enable maximum-likelihood phylogenetics pipeline tree estimation. |
|
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
https://usegalaxy.org.au/published/workflow?id=b9fd488b0938d323 |
|
|
sra_tools |
fasterq_dump, fastq_dump, sam_dump |
NCBI Sequence Read Archive toolkit utilities |
2015-11-16 |
https://github.com/ncbi/sra-tools |
3.1.1 |
sra-tools |
3.2.1 |
To update |
Data Source, Fastq Manipulation |
Data handling |
Data handling |
DNA, Genomics, Sequencing |
DNA, Genomics, Sequencing |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/sra-tools |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/sra-tools |
sra-tools |
SRA Software Toolkit |
The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives. |
|
3 |
3 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
0 |
0 |
3 |
3 |
3 |
0 |
11189 |
11447 |
386193 |
402789 |
26216 |
31946 |
606102 |
721150 |
3075 |
3313 |
51896 |
55561 |
334 |
334 |
4863 |
4864 |
1184364 |
1049054 |
47040 |
40814 |
https://dev.workflowhub.eu/workflows/1074?version=2, https://dev.workflowhub.eu/workflows/1115?version=2, https://dev.workflowhub.eu/workflows/1197?version=2, https://dev.workflowhub.eu/workflows/132?version=1, https://dev.workflowhub.eu/workflows/1330?version=1, https://dev.workflowhub.eu/workflows/193?version=2, https://dev.workflowhub.eu/workflows/38?version=1, https://usegalaxy.eu/published/workflow?id=08e50a41a8571c15, https://usegalaxy.eu/published/workflow?id=08f41680101a1a45, https://usegalaxy.eu/published/workflow?id=0ab3e47ebd3b520e, https://usegalaxy.eu/published/workflow?id=0d6bed63a2e4c3d6, https://usegalaxy.eu/published/workflow?id=135e8888872e8413, https://usegalaxy.eu/published/workflow?id=1590085d315aa80e, https://usegalaxy.eu/published/workflow?id=165089132248a0b0, https://usegalaxy.eu/published/workflow?id=1842a61fe5f6965f, https://usegalaxy.eu/published/workflow?id=18af9bbae833f8fe, https://usegalaxy.eu/published/workflow?id=18c9095fbf5c4517, https://usegalaxy.eu/published/workflow?id=1bc7b5eabea972fd, https://usegalaxy.eu/published/workflow?id=1be0c4adf13cf368, https://usegalaxy.eu/published/workflow?id=1ccc0c9e1c6821bb, https://usegalaxy.eu/published/workflow?id=1d2e17a4f71f2455, https://usegalaxy.eu/published/workflow?id=212c213f1d8e0154, https://usegalaxy.eu/published/workflow?id=21dd4bd16579fc12, https://usegalaxy.eu/published/workflow?id=24eaa682897379c8, https://usegalaxy.eu/published/workflow?id=2a73d658446747de, https://usegalaxy.eu/published/workflow?id=2d64d6571e01809d, https://usegalaxy.eu/published/workflow?id=2dce5e80bae66d27, https://usegalaxy.eu/published/workflow?id=2f37c35ade97aa8d, https://usegalaxy.eu/published/workflow?id=318be2b30bf7884c, https://usegalaxy.eu/published/workflow?id=350d7e6976e15d30, https://usegalaxy.eu/published/workflow?id=373d861ef4b0081a, https://usegalaxy.eu/published/workflow?id=39876e9c04aad543, https://usegalaxy.eu/published/workflow?id=3d5b39e454df584b, https://usegalaxy.eu/published/workflow?id=41b5f0d519404df7, https://usegalaxy.eu/published/workflow?id=48071c1720b2fd8d, https://usegalaxy.eu/published/workflow?id=487929c7b5be8dc3, https://usegalaxy.eu/published/workflow?id=48fe9c4de045d414, https://usegalaxy.eu/published/workflow?id=49ce9e738fadef4a, https://usegalaxy.eu/published/workflow?id=4d80a87510b2a54e, https://usegalaxy.eu/published/workflow?id=4dd7f6e1c1e7f96a, https://usegalaxy.eu/published/workflow?id=4fe19f3eac3b28ab, https://usegalaxy.eu/published/workflow?id=50758631a0e81a7a, https://usegalaxy.eu/published/workflow?id=526a93b9f6dfe5ce, https://usegalaxy.eu/published/workflow?id=52cafb62f5bf6e25, https://usegalaxy.eu/published/workflow?id=534b81d48df6b507, https://usegalaxy.eu/published/workflow?id=56868483be18f1a1, https://usegalaxy.eu/published/workflow?id=5b00ef046439d757, https://usegalaxy.eu/published/workflow?id=5be158931abca947, https://usegalaxy.eu/published/workflow?id=60e4d0db3164f037, https://usegalaxy.eu/published/workflow?id=61e592bafd9d2b58, https://usegalaxy.eu/published/workflow?id=625aafb9cf16b03f, https://usegalaxy.eu/published/workflow?id=6478043c474ac82e, https://usegalaxy.eu/published/workflow?id=65aed668233d5f73, https://usegalaxy.eu/published/workflow?id=67e20e3082d24fbd, https://usegalaxy.eu/published/workflow?id=6aaf2b342d57f78d, https://usegalaxy.eu/published/workflow?id=6b02df749d20cae1, https://usegalaxy.eu/published/workflow?id=6bce1d419a179c50, https://usegalaxy.eu/published/workflow?id=6efd80daabf518bf, https://usegalaxy.eu/published/workflow?id=6fc2b9bea5b75a49, https://usegalaxy.eu/published/workflow?id=6ff3eb92d75626f6, https://usegalaxy.eu/published/workflow?id=71a9224fa6f3da9d, https://usegalaxy.eu/published/workflow?id=762c64a9f588a420, https://usegalaxy.eu/published/workflow?id=766ebba7a2aee494, https://usegalaxy.eu/published/workflow?id=7783eeebfa264bf5, https://usegalaxy.eu/published/workflow?id=799b924edd3c401b, https://usegalaxy.eu/published/workflow?id=7b78e5630415f527, https://usegalaxy.eu/published/workflow?id=7baae0775071c7ec, https://usegalaxy.eu/published/workflow?id=7bda7ae31c427347, https://usegalaxy.eu/published/workflow?id=7c9b182da21748c7, https://usegalaxy.eu/published/workflow?id=7cbda24fd0767899, https://usegalaxy.eu/published/workflow?id=7ef7b460143211df, https://usegalaxy.eu/published/workflow?id=82879b0eb4a71ad0, https://usegalaxy.eu/published/workflow?id=841367f185aaade4, https://usegalaxy.eu/published/workflow?id=872f5bc9fdbbc619, https://usegalaxy.eu/published/workflow?id=87ec5a48ebc848b5, https://usegalaxy.eu/published/workflow?id=88b382a6f56a6329, https://usegalaxy.eu/published/workflow?id=8a1ddbae2d1c3f12, https://usegalaxy.eu/published/workflow?id=8bc1c3b9e665ea37, https://usegalaxy.eu/published/workflow?id=8c6371b360217f72, https://usegalaxy.eu/published/workflow?id=8f415b0c409f56f7, https://usegalaxy.eu/published/workflow?id=910570a2caafe462, https://usegalaxy.eu/published/workflow?id=9141c6449595c6a1, https://usegalaxy.eu/published/workflow?id=98d4adf5774e274e, https://usegalaxy.eu/published/workflow?id=9a60ecf98d4f8134, https://usegalaxy.eu/published/workflow?id=a461ea397418f3aa, https://usegalaxy.eu/published/workflow?id=a4e3667f6879bfaf, https://usegalaxy.eu/published/workflow?id=a6c666f3028ea440, https://usegalaxy.eu/published/workflow?id=a70583aa531b7115, https://usegalaxy.eu/published/workflow?id=a72d2667a53830f7, https://usegalaxy.eu/published/workflow?id=ab8924d78fa5ef8f, https://usegalaxy.eu/published/workflow?id=ad2c1d14c0d2dd2f, https://usegalaxy.eu/published/workflow?id=ae1ca223d6667070, https://usegalaxy.eu/published/workflow?id=b02d90c32dc67730, https://usegalaxy.eu/published/workflow?id=b26fee38f6f796d8, https://usegalaxy.eu/published/workflow?id=b41ff6d8fb5a0878, https://usegalaxy.eu/published/workflow?id=b6457cb04bf31613, https://usegalaxy.eu/published/workflow?id=b6eb5fe7e37f680a, https://usegalaxy.eu/published/workflow?id=b801e745205892f5, https://usegalaxy.eu/published/workflow?id=b86f3775aa1f13bc, https://usegalaxy.eu/published/workflow?id=bb1680ec6dde6004, https://usegalaxy.eu/published/workflow?id=bcb8a8c5bff790ab, https://usegalaxy.eu/published/workflow?id=be3d1d7d4afd96b1, https://usegalaxy.eu/published/workflow?id=bebcbd6f0ffa55c5, https://usegalaxy.eu/published/workflow?id=bfb762c96328e3c1, https://usegalaxy.eu/published/workflow?id=c885eaabae612d6d, https://usegalaxy.eu/published/workflow?id=cbc16cb5db98ab21, https://usegalaxy.eu/published/workflow?id=cc37667c2d1f9056, https://usegalaxy.eu/published/workflow?id=d503dee6f9b35a18, https://usegalaxy.eu/published/workflow?id=d5333903ba947adf, https://usegalaxy.eu/published/workflow?id=daf47855afa73de8, https://usegalaxy.eu/published/workflow?id=dd8b55e7768843b1, https://usegalaxy.eu/published/workflow?id=e62b659a5da9734e, https://usegalaxy.eu/published/workflow?id=e8a8c0b59ba9d593, https://usegalaxy.eu/published/workflow?id=e8eb80ee09159bac, https://usegalaxy.eu/published/workflow?id=ea3b120f105434ec, https://usegalaxy.eu/published/workflow?id=ebb51874b533738e, https://usegalaxy.eu/published/workflow?id=ecab5b2c3ff3df9d, https://usegalaxy.eu/published/workflow?id=f0ac222d3e965ab0, https://usegalaxy.eu/published/workflow?id=f12fb4a95954c448, https://usegalaxy.eu/published/workflow?id=f28459c5b16549b7, https://usegalaxy.eu/published/workflow?id=fb18c5d14acb1b36, https://usegalaxy.eu/published/workflow?id=fe43cf59e48bf556, https://usegalaxy.eu/published/workflow?id=fe64d430d50faf0b, https://usegalaxy.eu/published/workflow?id=fe8a1a970fd0d4cd, https://usegalaxy.fr/published/workflow?id=776ef2fa51094ba6, https://usegalaxy.fr/published/workflow?id=ff14dc4005e92cfd, https://usegalaxy.org.au/published/workflow?id=1aca9ce61d2eb5fd, https://usegalaxy.org.au/published/workflow?id=1cf77dc01e5f25d3, https://usegalaxy.org.au/published/workflow?id=30a601039d24e2eb, https://usegalaxy.org.au/published/workflow?id=367116498fc5d46b, https://usegalaxy.org.au/published/workflow?id=47672dbb17beeac4, https://usegalaxy.org.au/published/workflow?id=51b745f8c964e5c6, https://usegalaxy.org.au/published/workflow?id=5693bbcbe864d268, https://usegalaxy.org.au/published/workflow?id=5aff01d0b5fabd84, https://usegalaxy.org.au/published/workflow?id=6450b11440eb7fe8, https://usegalaxy.org.au/published/workflow?id=7c3b103c8ec8aecf, https://usegalaxy.org.au/published/workflow?id=811bbada546850bd, https://usegalaxy.org.au/published/workflow?id=85e97951bee557f4, https://usegalaxy.org.au/published/workflow?id=97016c7546583e3d, https://usegalaxy.org.au/published/workflow?id=9d9abc304f3054e3, https://usegalaxy.org.au/published/workflow?id=a1ccfa620265e45c, https://usegalaxy.org.au/published/workflow?id=a53330cff71725b7, https://usegalaxy.org.au/published/workflow?id=a8d58b9f85e174c0, https://usegalaxy.org.au/published/workflow?id=bf80ef6e5f37deb7, https://usegalaxy.org.au/published/workflow?id=d023add11a4f4b09, https://usegalaxy.org.au/published/workflow?id=d69016524c11be28, https://usegalaxy.org.au/published/workflow?id=e9bf69388d47a0e6, https://usegalaxy.org.au/published/workflow?id=fc3c83b11f527977, https://usegalaxy.org.au/published/workflow?id=feb7258263783c97, https://usegalaxy.org/published/workflow?id=0052e9b1b7bfec69, https://usegalaxy.org/published/workflow?id=01193a261e246899, https://usegalaxy.org/published/workflow?id=07fdeadce7a6d5cb, https://usegalaxy.org/published/workflow?id=092be3cf6e40282c, https://usegalaxy.org/published/workflow?id=0a3513961f0cf9dd, https://usegalaxy.org/published/workflow?id=0b62cfa1ff1f0a44, https://usegalaxy.org/published/workflow?id=0c052e50594f6d2d, https://usegalaxy.org/published/workflow?id=0dc0773c9af30002, https://usegalaxy.org/published/workflow?id=0e5a3899ae97076b, https://usegalaxy.org/published/workflow?id=0f43fdfe1824e9d7, https://usegalaxy.org/published/workflow?id=11f28984c6b94cdc, https://usegalaxy.org/published/workflow?id=13460c791ca97689, https://usegalaxy.org/published/workflow?id=173ecc0c88090d0e, https://usegalaxy.org/published/workflow?id=204d0da8a023d7da, https://usegalaxy.org/published/workflow?id=228ae7f537a60226, https://usegalaxy.org/published/workflow?id=2375a915a5b33b39, https://usegalaxy.org/published/workflow?id=23be272392a4b83b, https://usegalaxy.org/published/workflow?id=278c8f376de66bd7, https://usegalaxy.org/published/workflow?id=287a531193a0bf9f, https://usegalaxy.org/published/workflow?id=28e4871410288cb8, https://usegalaxy.org/published/workflow?id=2a4823c060dd216e, https://usegalaxy.org/published/workflow?id=2a659b0f87cf7453, https://usegalaxy.org/published/workflow?id=2d55f489c26f6e97, https://usegalaxy.org/published/workflow?id=30883502ec515fe2, https://usegalaxy.org/published/workflow?id=31186e478383465b, https://usegalaxy.org/published/workflow?id=3511da8b41b1fb5d, https://usegalaxy.org/published/workflow?id=38b0d05e36ca68dc, https://usegalaxy.org/published/workflow?id=3df85f2e7e157514, https://usegalaxy.org/published/workflow?id=3eb062db34c0c35b, https://usegalaxy.org/published/workflow?id=3f92474cd16ca314, https://usegalaxy.org/published/workflow?id=412da1489d6aed45, https://usegalaxy.org/published/workflow?id=427fce51fd9508eb, https://usegalaxy.org/published/workflow?id=43c39bc86399188f, https://usegalaxy.org/published/workflow?id=46207bf9ce5ee26a, https://usegalaxy.org/published/workflow?id=463ffaa860195d64, https://usegalaxy.org/published/workflow?id=4680511d4daad5d7, https://usegalaxy.org/published/workflow?id=4bcb4b668b9cee9e, https://usegalaxy.org/published/workflow?id=4c996921fb6a2334, https://usegalaxy.org/published/workflow?id=4de095b92ed661ac, https://usegalaxy.org/published/workflow?id=4dfe253e26b29052, https://usegalaxy.org/published/workflow?id=4e6005819e57ed35, https://usegalaxy.org/published/workflow?id=4f20cfc9589d7b2d, https://usegalaxy.org/published/workflow?id=5203bc68df3cf819, https://usegalaxy.org/published/workflow?id=5355f0c34d5a9f40, https://usegalaxy.org/published/workflow?id=5415e85a86898e41, https://usegalaxy.org/published/workflow?id=572224cc3986f8df, https://usegalaxy.org/published/workflow?id=582f3de3971fc38c, https://usegalaxy.org/published/workflow?id=5944c5effd56b0d6, https://usegalaxy.org/published/workflow?id=5a0eb1b27dad3cd6, https://usegalaxy.org/published/workflow?id=5a272f266a1fa4ac, https://usegalaxy.org/published/workflow?id=5b74b780d3955eb3, https://usegalaxy.org/published/workflow?id=5bcd1aade71a8035, https://usegalaxy.org/published/workflow?id=5cb86cdc33296cc2, https://usegalaxy.org/published/workflow?id=5e565547c5871076, https://usegalaxy.org/published/workflow?id=5fc0c7c65edc7457, https://usegalaxy.org/published/workflow?id=612452c925d723b7, https://usegalaxy.org/published/workflow?id=61a379a8d150bfca, https://usegalaxy.org/published/workflow?id=63d590e8567f7157, https://usegalaxy.org/published/workflow?id=696b2efc589afd6f, https://usegalaxy.org/published/workflow?id=6d0a3f36d2736087, https://usegalaxy.org/published/workflow?id=6da54816b436dc58, https://usegalaxy.org/published/workflow?id=7022c4d9af725e5c, https://usegalaxy.org/published/workflow?id=712234790045e58c, https://usegalaxy.org/published/workflow?id=734e08331f8f34b7, https://usegalaxy.org/published/workflow?id=73ef57dfa532af3d, https://usegalaxy.org/published/workflow?id=7454015793c4adc9, https://usegalaxy.org/published/workflow?id=750d086417b8a20e, https://usegalaxy.org/published/workflow?id=75f14618020c922a, https://usegalaxy.org/published/workflow?id=7643e66a9b4e9c11, https://usegalaxy.org/published/workflow?id=7a203cf1678df56d, https://usegalaxy.org/published/workflow?id=7b19452fe35b8b17, https://usegalaxy.org/published/workflow?id=7b6ed1b7bdbe1e7f, https://usegalaxy.org/published/workflow?id=7e275e09c2bb81b9, https://usegalaxy.org/published/workflow?id=7e81153760fb4c90, https://usegalaxy.org/published/workflow?id=80785485eb32e062, https://usegalaxy.org/published/workflow?id=8b041ba8eb4cacb1, https://usegalaxy.org/published/workflow?id=8b4945a0fb49e03e, https://usegalaxy.org/published/workflow?id=93650de42fb8c015, https://usegalaxy.org/published/workflow?id=93810012f2610de4, https://usegalaxy.org/published/workflow?id=98286b6154e1b57f, https://usegalaxy.org/published/workflow?id=9e74e3455e47c813, https://usegalaxy.org/published/workflow?id=9f38a8d3e373d05c, https://usegalaxy.org/published/workflow?id=a04c25ac243002ad, https://usegalaxy.org/published/workflow?id=a1cb49d176baeae7, https://usegalaxy.org/published/workflow?id=a3c2ff6728c8c7a8, https://usegalaxy.org/published/workflow?id=a743746151101352, https://usegalaxy.org/published/workflow?id=a81944fafdc194aa, https://usegalaxy.org/published/workflow?id=a89def2c2462674a, https://usegalaxy.org/published/workflow?id=a97badc83977e645, https://usegalaxy.org/published/workflow?id=a97c694b3298ae44, https://usegalaxy.org/published/workflow?id=aac2ae0419f7d515, https://usegalaxy.org/published/workflow?id=ac3755c1ae5f7f16, https://usegalaxy.org/published/workflow?id=ac8b74b911778fbc, https://usegalaxy.org/published/workflow?id=acb49fe14ae16fe9, https://usegalaxy.org/published/workflow?id=ae81cc0e8263d03e, https://usegalaxy.org/published/workflow?id=af85a2ae187409f4, https://usegalaxy.org/published/workflow?id=b2430fa67f6914fc, https://usegalaxy.org/published/workflow?id=b26501a4a85bfdeb, https://usegalaxy.org/published/workflow?id=b2e81f82ccf3afd6, https://usegalaxy.org/published/workflow?id=b3823d276917baf0, https://usegalaxy.org/published/workflow?id=b77fa73d4fbde131, https://usegalaxy.org/published/workflow?id=b7c67632a6eabda5, https://usegalaxy.org/published/workflow?id=bcd23aee681e5af5, https://usegalaxy.org/published/workflow?id=bdfb27e4ef7b6138, https://usegalaxy.org/published/workflow?id=c027d5f90a9f0c74, https://usegalaxy.org/published/workflow?id=c41272bceb3292d8, https://usegalaxy.org/published/workflow?id=c7693951c6215e19, https://usegalaxy.org/published/workflow?id=c82a73c85add7ec4, https://usegalaxy.org/published/workflow?id=c8653e558a68eb68, https://usegalaxy.org/published/workflow?id=caa7b09601ea6cfe, https://usegalaxy.org/published/workflow?id=caee1b54c00784b4, https://usegalaxy.org/published/workflow?id=d1ca40dd7e591025, https://usegalaxy.org/published/workflow?id=d485bf21a5069fe4, https://usegalaxy.org/published/workflow?id=d5514e327878b531, https://usegalaxy.org/published/workflow?id=d793885f1a223d9c, https://usegalaxy.org/published/workflow?id=d82db9c29b998f22, https://usegalaxy.org/published/workflow?id=d830ca239e385b9d, https://usegalaxy.org/published/workflow?id=d96bb2d69eb13dcf, https://usegalaxy.org/published/workflow?id=d97a88a8f9061e25, https://usegalaxy.org/published/workflow?id=ddb737f2ad0589e8, https://usegalaxy.org/published/workflow?id=dec0cf06fa059e65, https://usegalaxy.org/published/workflow?id=e0c33057ac2670ba, https://usegalaxy.org/published/workflow?id=e22ea88bc0fdc146, https://usegalaxy.org/published/workflow?id=e33f6a058c5f57e5, https://usegalaxy.org/published/workflow?id=e5a01f746bc9e9b5, https://usegalaxy.org/published/workflow?id=ed0a5c1bbd978c34, https://usegalaxy.org/published/workflow?id=eed40b0bd0a233cd, https://usegalaxy.org/published/workflow?id=ef17168194722023, https://usegalaxy.org/published/workflow?id=ef8d3e19e09b9246, https://usegalaxy.org/published/workflow?id=f571e946f08c545a, https://usegalaxy.org/published/workflow?id=f961fc46d4fddecc, https://usegalaxy.org/published/workflow?id=fb903de4aa4d5090, https://usegalaxy.org/published/workflow?id=fc09d17e0bce18f8, https://workflowhub.eu/workflows/1103?version=3, https://workflowhub.eu/workflows/1104?version=2, https://workflowhub.eu/workflows/137?version=9, https://workflowhub.eu/workflows/1540?version=1, https://workflowhub.eu/workflows/1616?version=1, https://workflowhub.eu/workflows/1628?version=1, https://workflowhub.eu/workflows/1642?version=1, https://workflowhub.eu/workflows/1679?version=1, https://workflowhub.eu/workflows/338?version=1, https://workflowhub.eu/workflows/35?version=1, https://workflowhub.eu/workflows/36?version=1, https://workflowhub.eu/workflows/37?version=1, https://workflowhub.eu/workflows/38?version=1, https://workflowhub.eu/workflows/39?version=1, https://workflowhub.eu/workflows/40?version=1, https://workflowhub.eu/workflows/434?version=1, https://workflowhub.eu/workflows/622?version=11 |
assembly/assembly-with-preprocessing, galaxy-interface/ncbi-sarf, introduction/galaxy-intro-ngs-data-managment, transcriptomics/minerva-pathways, variant-analysis/baculovirus-isolate-variation, variant-analysis/sars-cov-2 |
|
srst2 |
srst2 |
SRST2 Short Read Sequence Typing for Bacterial Pathogens |
2022-08-22 |
http://katholt.github.io/srst2/ |
0.2.0 |
samtools |
1.22.1 |
To update |
Metagenomics |
Multilocus sequence typing |
Multilocus sequence typing |
Whole genome sequencing, Public health and epidemiology, Comparative genomics |
Whole genome sequencing, Public health and epidemiology, Comparative genomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/srst2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/srst2 |
srst2 |
srst2 |
Short Read Sequence Typing for Bacterial Pathogens |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
42 |
42 |
316 |
316 |
1 |
1 |
71 |
71 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
387 |
387 |
43 |
43 |
https://workflowhub.eu/workflows/407?version=1 |
|
|
stacks |
stacks_assembleperead, stacks_clonefilter, stacks_cstacks, stacks_denovomap, stacks_genotypes, stacks_populations, stacks_procrad, stacks_pstacks, stacks_refmap, stacks_rxstacks, stacks_sstacks, stacks_stats, stacks_ustacks |
Stacks is a software pipeline for building loci from short-read sequences, such as RAD-seq |
2016-03-07 |
http://catchenlab.life.illinois.edu/stacks/ |
|
stacks |
2.68 |
To update |
Sequence Analysis |
Data handling |
Data handling |
Mapping, Population genetics |
Mapping, Population genetics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/stacks |
stacks |
Stacks |
Developed to work with restriction enzyme based sequence data, such as RADseq, for building genetic maps and conducting population genomics and phylogeography analysis. |
|
0 |
13 |
13 |
12 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
13 |
13 |
0 |
134 |
184 |
6889 |
12825 |
0 |
0 |
0 |
0 |
38 |
38 |
5253 |
5253 |
2 |
2 |
8 |
8 |
18086 |
12150 |
224 |
174 |
https://dev.workflowhub.eu/workflows/1216?version=1, https://dev.workflowhub.eu/workflows/1245?version=2, https://dev.workflowhub.eu/workflows/1250?version=2, https://dev.workflowhub.eu/workflows/1286?version=2, https://workflowhub.eu/workflows/1662?version=1, https://workflowhub.eu/workflows/1665?version=1, https://workflowhub.eu/workflows/1666?version=1, https://workflowhub.eu/workflows/1683?version=1 |
ecology/de-novo-rad-seq, ecology/genetic-map-rad-seq, ecology/ref-based-rad-seq |
|
stacks2 |
stacks2_clonefilter, stacks2_cstacks, stacks2_denovomap, stacks2_gstacks, stacks2_kmerfilter, stacks2_populations, stacks2_procrad, stacks2_refmap, stacks2_shortreads, stacks2_sstacks, stacks2_tsv2bam, stacks2_ustacks |
Stacks is a software pipeline for building loci from short-read sequences, such as RAD-seq |
2018-12-01 |
http://catchenlab.life.illinois.edu/stacks/ |
2.55 |
stacks |
2.68 |
To update |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/stacks2 |
|
|
|
|
0 |
12 |
12 |
12 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
12 |
0 |
130 |
138 |
8504 |
9239 |
0 |
0 |
0 |
0 |
47 |
47 |
19419 |
19419 |
8 |
8 |
609 |
609 |
29267 |
28532 |
193 |
185 |
https://usegalaxy.eu/published/workflow?id=510bcef37f385495, https://usegalaxy.eu/published/workflow?id=f5d387583670f694, https://usegalaxy.org.au/published/workflow?id=1e71b5232b9b4d2a, https://usegalaxy.org.au/published/workflow?id=9b3f3d331d0b2892, https://usegalaxy.org.au/published/workflow?id=a401ad5349b44dfb, https://usegalaxy.org.au/published/workflow?id=ca45322bff44e73a, https://usegalaxy.org.au/published/workflow?id=f7adc76331620f34, https://workflowhub.eu/workflows/347?version=1, https://workflowhub.eu/workflows/348?version=1, https://workflowhub.eu/workflows/349?version=1, https://workflowhub.eu/workflows/350?version=1, https://workflowhub.eu/workflows/352?version=1 |
|
|
star_fusion |
star_fusion |
STAR Fusion detects fusion genes in RNA-Seq data after running RNA-STAR |
2015-10-15 |
https://github.com/STAR-Fusion/STAR-Fusion |
0.5.4-3+galaxy1 |
star-fusion |
1.15.1 |
To update |
Sequence Analysis, Transcriptomics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/star_fusion |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/star_fusion |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
85 |
102 |
1299 |
1411 |
215 |
316 |
2050 |
3171 |
4 |
4 |
231 |
231 |
0 |
0 |
0 |
0 |
4813 |
3580 |
422 |
304 |
|
|
|
staramr |
staramr_search |
Scan genome contigs against the ResFinder, PlasmidFinder, and PointFinder antimicrobial resistance databases. |
2024-09-19 |
https://github.com/phac-nml/staramr |
0.11.0 |
staramr |
0.11.0 |
Up-to-date |
Sequence Analysis |
Antimicrobial resistance prediction |
Antimicrobial resistance prediction |
Microbiology, Public health and epidemiology, Infectious disease |
Microbiology, Public health and epidemiology, Infectious disease |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/staramr |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/staramr |
staramr |
staramr |
staramr (*AMR) scans bacterial genome contigs against the ResFinder, PointFinder, and PlasmidFinder databases (used by the ResFinder webservice and other webservices offered by the Center for Genomic Epidemiology) and compiles a summary report of detected antimicrobial resistance genes. The star|* in staramr indicates that it can handle all of the ResFinder, PointFinder, and PlasmidFinder databases. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
2391 |
2435 |
25572 |
26123 |
1703 |
1703 |
11898 |
11898 |
952 |
952 |
7888 |
7888 |
52 |
52 |
5414 |
5414 |
51323 |
50772 |
5142 |
5098 |
https://dev.workflowhub.eu/workflows/1107?version=1, https://dev.workflowhub.eu/workflows/1168?version=2, https://usegalaxy.eu/published/workflow?id=007ce6405d196df3, https://usegalaxy.eu/published/workflow?id=152223c8aed27357, https://usegalaxy.eu/published/workflow?id=1ce523ef51f47134, https://usegalaxy.eu/published/workflow?id=249c115413f17f28, https://usegalaxy.eu/published/workflow?id=2e0075791f7fa384, https://usegalaxy.eu/published/workflow?id=32d2f5340098bcbd, https://usegalaxy.eu/published/workflow?id=34df701aa23a9fb3, https://usegalaxy.eu/published/workflow?id=374797e58377c40f, https://usegalaxy.eu/published/workflow?id=39837ca09374598b, https://usegalaxy.eu/published/workflow?id=41d207d06a32ba05, https://usegalaxy.eu/published/workflow?id=44e53ea319e07daa, https://usegalaxy.eu/published/workflow?id=4ddbffe4b3fef275, https://usegalaxy.eu/published/workflow?id=628062a8cf93261f, https://usegalaxy.eu/published/workflow?id=6d87481be47902e1, https://usegalaxy.eu/published/workflow?id=7aa32aba3fde0708, https://usegalaxy.eu/published/workflow?id=87231a6a7938cb95, https://usegalaxy.eu/published/workflow?id=9219557de92e0203, https://usegalaxy.eu/published/workflow?id=94c3d329c31c712f, https://usegalaxy.eu/published/workflow?id=a06b1ed5cd25922f, https://usegalaxy.eu/published/workflow?id=abe85758e77c78e6, https://usegalaxy.eu/published/workflow?id=b203dec6ee6da2fd, https://usegalaxy.eu/published/workflow?id=b2b46e71046b1999, https://usegalaxy.eu/published/workflow?id=b4de76c0a4d0e23a, https://usegalaxy.eu/published/workflow?id=c48807045e258dd8, https://usegalaxy.eu/published/workflow?id=dc7107896a3f2964, https://usegalaxy.eu/published/workflow?id=e37cc0b64774561b, https://usegalaxy.eu/published/workflow?id=ea485dbabc76488d, https://usegalaxy.eu/published/workflow?id=eb5ab8bc82569eee, https://usegalaxy.eu/published/workflow?id=ecf48fa50af560a0, https://usegalaxy.eu/published/workflow?id=f30f8e7dcd50cd0d, https://usegalaxy.org.au/published/workflow?id=2e29b21cdec7d0cc, https://usegalaxy.org.au/published/workflow?id=35f39173f0ac9179, https://usegalaxy.org.au/published/workflow?id=92fcdd490831c6c5, https://usegalaxy.org.au/published/workflow?id=c9b7de574fb2f2d5, https://usegalaxy.org.au/published/workflow?id=d9571b3dfef34e5e, https://usegalaxy.org/published/workflow?id=2078a54de1f2628d, https://usegalaxy.org/published/workflow?id=2b4b1fe82258f303, https://usegalaxy.org/published/workflow?id=3c177fdf38311118, https://usegalaxy.org/published/workflow?id=547f86db467bf620, https://usegalaxy.org/published/workflow?id=aaf8e740b3f8e2c0, https://usegalaxy.org/published/workflow?id=d4f0a7ccb09f1e55, https://usegalaxy.org/published/workflow?id=ef187f85b103d858, https://usegalaxy.org/published/workflow?id=fde774a049875466, https://workflowhub.eu/workflows/1049?version=7, https://workflowhub.eu/workflows/1189?version=2, https://workflowhub.eu/workflows/1477?version=1, https://workflowhub.eu/workflows/1488?version=1, https://workflowhub.eu/workflows/406?version=1, https://workflowhub.eu/workflows/470?version=1 |
genome-annotation/amr-gene-detection, microbiome/plasmid-metagenomics-nanopore |
|
straindesign |
straindesign_analyzing_model, straindesign_reduce_model, straindesign_simulate_deletion |
Toolbox to optimize biological model |
2022-10-02 |
https://github.com/brsynth/straindesign |
3.2.2 |
straindesign |
3.2.3 |
To update |
Systems Biology, Synthetic Biology |
|
|
|
|
iuc |
https://github.com/brsynth/straindesign |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/straindesign |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
strelka |
strelka_germline, strelka_somatic |
Strelka2 is a fast and accurate small variant caller optimizedfor analysis of germline variation in small cohorts and somaticvariation in tumor/normal sample pairs. The germline caller employs anefficient tiered haplotype model to improve accuracy and provide read-backedphasing, adaptively selecting between assembly and a faster alignment-basedhaplotyping approach at each variant locus. The germline caller also analyzesinput sequencing data using a mixture-model indel error estimation method toimprove robustness to indel noise. The somatic calling model improves on theoriginal Strelka method for liquid and late-stage tumor analysis by accountingfor possible tumor cell contamination in the normal sample. A final empiricalvariant re-scoring step using random forest models trained on various callquality features has been added to both callers to further improve precision. |
2021-01-27 |
https://github.com/Illumina/strelka/ |
2.9.10 |
strelka |
2.9.10 |
Up-to-date |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/strelka |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/strelka |
|
|
|
|
2 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
0 |
0 |
76 |
76 |
882 |
882 |
324 |
324 |
1711 |
1711 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2593 |
2593 |
400 |
400 |
https://usegalaxy.eu/published/workflow?id=ddd604341afd9cf7 |
|
|
stringtie |
stringtie, stringtie_merge |
StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. |
2014-09-13 |
http://ccb.jhu.edu/software/stringtie/ |
2.2.3 |
stringtie |
3.0.1 |
To update |
Transcriptomics |
Transcriptome assembly, RNA-Seq analysis |
Transcriptome assembly, RNA-Seq analysis |
Transcriptomics, RNA-Seq |
Transcriptomics, RNA-Seq |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/stringtie |
stringtie |
StringTie |
Fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optional de novo assembly step to assemble and quantitate full-length transcripts representing multiple splice variants for each gene locus. |
|
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
3437 |
3797 |
185005 |
198297 |
7025 |
10575 |
319503 |
423238 |
700 |
800 |
27357 |
30535 |
271 |
271 |
3116 |
3118 |
655188 |
534981 |
15443 |
11433 |
https://dev.workflowhub.eu/workflows/1042?version=1, https://dev.workflowhub.eu/workflows/1141?version=1, https://dev.workflowhub.eu/workflows/1201?version=2, https://dev.workflowhub.eu/workflows/1319?version=2, https://dev.workflowhub.eu/workflows/1324?version=3, https://dev.workflowhub.eu/workflows/1386?version=1, https://dev.workflowhub.eu/workflows/1398?version=1, https://usegalaxy.eu/published/workflow?id=0de150b19102cb7e, https://usegalaxy.eu/published/workflow?id=0eb137cd936bbfe0, https://usegalaxy.eu/published/workflow?id=17916f0229e3c868, https://usegalaxy.eu/published/workflow?id=17ad465d9515cd25, https://usegalaxy.eu/published/workflow?id=1cd85fe90839c10d, https://usegalaxy.eu/published/workflow?id=1f9a9a7998ef5ab3, https://usegalaxy.eu/published/workflow?id=2287afbf248d9c89, https://usegalaxy.eu/published/workflow?id=249c5d6698c8b98c, https://usegalaxy.eu/published/workflow?id=2d08a73dd8ff99e9, https://usegalaxy.eu/published/workflow?id=39afbf843b5513bf, https://usegalaxy.eu/published/workflow?id=3a8150c81b90a3a7, https://usegalaxy.eu/published/workflow?id=406e6ef0dfb38628, https://usegalaxy.eu/published/workflow?id=409336bf210033a2, https://usegalaxy.eu/published/workflow?id=47a0407867a90f95, https://usegalaxy.eu/published/workflow?id=68e8042f11d5a3fd, https://usegalaxy.eu/published/workflow?id=6e6cf59bfeb938bf, https://usegalaxy.eu/published/workflow?id=7136ce9f18c74853, https://usegalaxy.eu/published/workflow?id=82ef590b5821805d, https://usegalaxy.eu/published/workflow?id=873e6ac4699ed7f6, https://usegalaxy.eu/published/workflow?id=87fea062a9646a31, https://usegalaxy.eu/published/workflow?id=94bbf8fa7c1f030d, https://usegalaxy.eu/published/workflow?id=96c61a584cb2e5e9, https://usegalaxy.eu/published/workflow?id=9a60ecf98d4f8134, https://usegalaxy.eu/published/workflow?id=9b025479fade745d, https://usegalaxy.eu/published/workflow?id=9da26c5131603b9f, https://usegalaxy.eu/published/workflow?id=a2f36d4dd48d8ec2, https://usegalaxy.eu/published/workflow?id=a6d36048d545bca7, https://usegalaxy.eu/published/workflow?id=a7638e7f908fd90d, https://usegalaxy.eu/published/workflow?id=aff44f1665a14e23, https://usegalaxy.eu/published/workflow?id=b426e137396acb14, https://usegalaxy.eu/published/workflow?id=b7a3cbcd32734e8b, https://usegalaxy.eu/published/workflow?id=bace9aebab9d4ce3, https://usegalaxy.eu/published/workflow?id=c4fa05e209a2f082, https://usegalaxy.eu/published/workflow?id=d6809603f46de1b3, https://usegalaxy.eu/published/workflow?id=deec04097a871646, https://usegalaxy.eu/published/workflow?id=e8202b7b6338005d, https://usegalaxy.eu/published/workflow?id=ead0f264798f9418, https://usegalaxy.eu/published/workflow?id=efe6d8a65226505e, https://usegalaxy.eu/published/workflow?id=f026c4b8341ff94c, https://usegalaxy.fr/published/workflow?id=334189184455d9a2, https://usegalaxy.fr/published/workflow?id=aa96487c5a1b29bf, https://usegalaxy.org.au/published/workflow?id=0ebaaecf61dfc921, https://usegalaxy.org.au/published/workflow?id=157e7614ae18849b, https://usegalaxy.org.au/published/workflow?id=53010c2f1f207429, https://usegalaxy.org.au/published/workflow?id=56bda8e4b0018e03, https://usegalaxy.org.au/published/workflow?id=5878a54446a26449, https://usegalaxy.org.au/published/workflow?id=6e1e24f9e0326930, https://usegalaxy.org.au/published/workflow?id=749d8f2d26e0a111, https://usegalaxy.org.au/published/workflow?id=7c22d726e1716f4b, https://usegalaxy.org.au/published/workflow?id=7cd4fcc8e06ce4fd, https://usegalaxy.org.au/published/workflow?id=8d6d4f848067f3d9, https://usegalaxy.org.au/published/workflow?id=9b18123afbe1264b, https://usegalaxy.org.au/published/workflow?id=a1b97364f84022cf, https://usegalaxy.org.au/published/workflow?id=a35e5a238a70176a, https://usegalaxy.org.au/published/workflow?id=b03b577156e4db5b, https://usegalaxy.org.au/published/workflow?id=b517cabb697491a0, https://usegalaxy.org.au/published/workflow?id=b7226d37b25df833, https://usegalaxy.org.au/published/workflow?id=c2dee690320f9845, https://usegalaxy.org.au/published/workflow?id=c8d18e2c03dca796, https://usegalaxy.org.au/published/workflow?id=ccc6602623583bcc, https://usegalaxy.org.au/published/workflow?id=ccfae75390038ced, https://usegalaxy.org.au/published/workflow?id=e045a6064ad5fdc4, https://usegalaxy.org/published/workflow?id=08bdcecd1cb0bda3, https://usegalaxy.org/published/workflow?id=1234a128adc25b03, https://usegalaxy.org/published/workflow?id=2125db88b4a71c09, https://usegalaxy.org/published/workflow?id=27144c7e44d3f56b, https://usegalaxy.org/published/workflow?id=2f774500d5bec9a6, https://usegalaxy.org/published/workflow?id=31c35b9a93237235, https://usegalaxy.org/published/workflow?id=35209d092e636cd8, https://usegalaxy.org/published/workflow?id=38f06c4c6dd4eb62, https://usegalaxy.org/published/workflow?id=3ab66315f50501f0, https://usegalaxy.org/published/workflow?id=3ad9cdcda44b7dfb, https://usegalaxy.org/published/workflow?id=3e57e668cf698d19, https://usegalaxy.org/published/workflow?id=4061e061f659449b, https://usegalaxy.org/published/workflow?id=42bc3a770f0ab6b8, https://usegalaxy.org/published/workflow?id=454d7310d001a4d0, https://usegalaxy.org/published/workflow?id=5336b9d26a083983, https://usegalaxy.org/published/workflow?id=5a5d0dc4cd2f1ebd, https://usegalaxy.org/published/workflow?id=5aa2caa2dcae1477, https://usegalaxy.org/published/workflow?id=63b3b266bde77563, https://usegalaxy.org/published/workflow?id=6a3e47124e32e260, https://usegalaxy.org/published/workflow?id=73ef57dfa532af3d, https://usegalaxy.org/published/workflow?id=7551458d929355c2, https://usegalaxy.org/published/workflow?id=7a26069c2939bef9, https://usegalaxy.org/published/workflow?id=8700f593a3d642f5, https://usegalaxy.org/published/workflow?id=87eb1a8ee7a2c984, https://usegalaxy.org/published/workflow?id=89f52c97b3aee938, https://usegalaxy.org/published/workflow?id=8bcab83874cbc75c, https://usegalaxy.org/published/workflow?id=9c022f4028de0bc6, https://usegalaxy.org/published/workflow?id=b0e19e7315b64c87, https://usegalaxy.org/published/workflow?id=b1b75a9323d25085, https://usegalaxy.org/published/workflow?id=b77fa73d4fbde131, https://usegalaxy.org/published/workflow?id=bd2ce9a97c1598df, https://usegalaxy.org/published/workflow?id=c2c6779a8b1821e0, https://usegalaxy.org/published/workflow?id=d761637d43ee0324, https://usegalaxy.org/published/workflow?id=e336bca259abd474, https://usegalaxy.org/published/workflow?id=e55ca98817c1855e, https://usegalaxy.org/published/workflow?id=ef2c1fb7d6a51b3a, https://usegalaxy.org/published/workflow?id=f5d3d6fe05271c4b, https://workflowhub.eu/workflows/1051?version=2, https://workflowhub.eu/workflows/1324?version=1, https://workflowhub.eu/workflows/1407?version=1, https://workflowhub.eu/workflows/1437?version=1, https://workflowhub.eu/workflows/1484?version=1, https://workflowhub.eu/workflows/1685?version=1, https://workflowhub.eu/workflows/1688?version=1, https://workflowhub.eu/workflows/1788?version=1, https://workflowhub.eu/workflows/39?version=1, https://workflowhub.eu/workflows/877?version=1, https://workflowhub.eu/workflows/878?version=1 |
genome-annotation/lncrna, proteomics/neoantigen-non-reference-database-generation, proteomics/proteogenomics-dbcreation, transcriptomics/de-novo, transcriptomics/differential-isoform-expression |
|
structure |
structure |
for using multi-locus genotype data to investigate population structure. |
2017-09-22 |
https://web.stanford.edu/group/pritchardlab/structure.html |
2.3.4 |
structure |
2.3.4 |
Up-to-date |
Phylogenetics, Variant Analysis |
Genetic variation analysis |
Genetic variation analysis |
Population genetics |
Population genetics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/structure |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/structure |
structure |
Structure |
The program structureis a free software package for using multi-locus genotype data to investigate population structure. Its uses include inferring the presence of distinct populations, assigning individuals to populations, studying hybrid zones, identifying migrants and admixed individuals, and estimating population allele frequencies in situations where many individuals are migrants or admixed. |
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
125 |
134 |
3289 |
3484 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
330 |
330 |
3814 |
3619 |
137 |
128 |
|
|
|
structureharvester |
structureharvester |
for parsing STRUCTURE outputs and for performing the Evanno method |
2017-12-06 |
http://alumni.soe.ucsc.edu/~dearl/software/structureHarvester/ |
0.6.94 |
structureharvester |
0.6.94 |
Up-to-date |
Phylogenetics, Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/structureharvester |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/structureharvester |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
suite_pretext |
pretext_graph, pretext_map, pretext_snapshot |
Process genome contacts maps processing images. |
2021-04-05 |
https://github.com/wtsi-hpag/PretextSnapshot |
0.0.7 |
pretextgraph |
0.0.9 |
To update |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/pretext |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/pretext |
|
|
|
|
3 |
2 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
311 |
311 |
3973 |
3973 |
207 |
207 |
3305 |
3305 |
42 |
42 |
1375 |
1375 |
0 |
0 |
0 |
0 |
8653 |
8653 |
560 |
560 |
https://dev.workflowhub.eu/workflows/1002?version=1, https://dev.workflowhub.eu/workflows/1127?version=3, https://dev.workflowhub.eu/workflows/1187?version=2, https://usegalaxy.eu/published/workflow?id=069d99391a69baf4, https://usegalaxy.eu/published/workflow?id=0c3ce9feb83f7920, https://usegalaxy.eu/published/workflow?id=0cf3c2114ab65858, https://usegalaxy.eu/published/workflow?id=3010ecad1a342331, https://usegalaxy.eu/published/workflow?id=31f8c7c46207432f, https://usegalaxy.eu/published/workflow?id=3b57fc81001667b5, https://usegalaxy.eu/published/workflow?id=44c92c04f1d14631, https://usegalaxy.eu/published/workflow?id=4949751217c0e211, https://usegalaxy.eu/published/workflow?id=5395e76fa828c343, https://usegalaxy.eu/published/workflow?id=652433160b04b232, https://usegalaxy.eu/published/workflow?id=792b24fc23bd3071, https://usegalaxy.eu/published/workflow?id=7b4a9aebb09b51ca, https://usegalaxy.eu/published/workflow?id=7e383fe34031a9d0, https://usegalaxy.eu/published/workflow?id=7e68cf8a67efa8e9, https://usegalaxy.eu/published/workflow?id=84236d781f7dd2ad, https://usegalaxy.eu/published/workflow?id=a2daeb488bee0152, https://usegalaxy.eu/published/workflow?id=a37d1e0db16cfb67, https://usegalaxy.eu/published/workflow?id=a53f78aa6866b811, https://usegalaxy.eu/published/workflow?id=b287bb779cf686ef, https://usegalaxy.eu/published/workflow?id=bc32937d505135ab, https://usegalaxy.eu/published/workflow?id=bc8ccd13a07bd9ec, https://usegalaxy.eu/published/workflow?id=c8f94a2e838fc0f1, https://usegalaxy.eu/published/workflow?id=cab2aa791a814d55, https://usegalaxy.eu/published/workflow?id=d649ec485c4b3994, https://usegalaxy.eu/published/workflow?id=f63127675a07e00a, https://usegalaxy.eu/published/workflow?id=feeb1fa358ccf328, https://usegalaxy.org.au/published/workflow?id=0aa316f8c6cff444, https://usegalaxy.org.au/published/workflow?id=0dbb85f727302a72, https://usegalaxy.org.au/published/workflow?id=29f0c07c8a24b542, https://usegalaxy.org.au/published/workflow?id=3b6e9f03b088bf01, https://usegalaxy.org.au/published/workflow?id=434127690544d0e9, https://usegalaxy.org.au/published/workflow?id=455e68f185fec41b, https://usegalaxy.org.au/published/workflow?id=466809eb3392f7fb, https://usegalaxy.org.au/published/workflow?id=4ea1049371de111c, https://usegalaxy.org.au/published/workflow?id=6c1c11a81a2ab1b8, https://usegalaxy.org.au/published/workflow?id=6de8899c40a90b98, https://usegalaxy.org.au/published/workflow?id=6ec5728eec9c26d7, https://usegalaxy.org.au/published/workflow?id=7028436ef03171cc, https://usegalaxy.org.au/published/workflow?id=77b2fcf8c805ad5d, https://usegalaxy.org.au/published/workflow?id=7a97e8ccc332c1e8, https://usegalaxy.org.au/published/workflow?id=868775ef66d174a5, https://usegalaxy.org.au/published/workflow?id=86eb0ea9dc230f04, https://usegalaxy.org.au/published/workflow?id=ae2a397837b232b1, https://usegalaxy.org.au/published/workflow?id=ae6a03240680712a, https://usegalaxy.org.au/published/workflow?id=b53f82aaf32fbaa9, https://usegalaxy.org.au/published/workflow?id=b9e89401313a0cca, https://usegalaxy.org.au/published/workflow?id=be35847680078c90, https://usegalaxy.org.au/published/workflow?id=cac0b8a09d59044b, https://usegalaxy.org.au/published/workflow?id=e07866576cc2f467, https://usegalaxy.org.au/published/workflow?id=ea98be0f99aaceb9, https://usegalaxy.org.au/published/workflow?id=f53d8ade897b3f46, https://usegalaxy.org.au/published/workflow?id=fdec6e2fcd5e2cf5, https://usegalaxy.org/published/workflow?id=155839aeb6340f54, https://usegalaxy.org/published/workflow?id=1ea88ca80a7f0038, https://usegalaxy.org/published/workflow?id=23eeee48217654d4, https://usegalaxy.org/published/workflow?id=28dbbfb3d480f4b1, https://usegalaxy.org/published/workflow?id=28ddea356ae57da1, https://usegalaxy.org/published/workflow?id=325783f21bc5fef6, https://usegalaxy.org/published/workflow?id=349f1bcdbc84045f, https://usegalaxy.org/published/workflow?id=3d805d7e0f34c727, https://usegalaxy.org/published/workflow?id=3db51822f04f4ff7, https://usegalaxy.org/published/workflow?id=49a07807fcea8158, https://usegalaxy.org/published/workflow?id=6341c384ceaf47ed, https://usegalaxy.org/published/workflow?id=74049914e4a6c791, https://usegalaxy.org/published/workflow?id=7b8ee08ba291d231, https://usegalaxy.org/published/workflow?id=88327cb2e0fe3c25, https://usegalaxy.org/published/workflow?id=903e35b62946ed76, https://usegalaxy.org/published/workflow?id=91a4daecbb97d03e, https://usegalaxy.org/published/workflow?id=9f4c4038d1c519e2, https://usegalaxy.org/published/workflow?id=a4a6d6846c1692f9, https://usegalaxy.org/published/workflow?id=afa89bb0e8966753, https://usegalaxy.org/published/workflow?id=f09033420c6267ab, https://usegalaxy.org/published/workflow?id=fa36d9b50e956917, https://usegalaxy.org/published/workflow?id=fb98ef955b3dbd4b, https://workflowhub.eu/workflows/1054?version=1, https://workflowhub.eu/workflows/1164?version=2, https://workflowhub.eu/workflows/1327?version=6, https://workflowhub.eu/workflows/1607?version=1, https://workflowhub.eu/workflows/1641?version=1, https://workflowhub.eu/workflows/608?version=1, https://workflowhub.eu/workflows/625?version=23, https://workflowhub.eu/workflows/702?version=1 |
assembly/ERGA-post-assembly-QC, assembly/vgp_genome_assembly |
|
swiftlink |
swiftlink |
Parallel MCMC Linkage Analysis |
2017-11-21 |
https://github.com/ajm/swiftlink |
1.0 |
swiftlink |
1.0 |
Up-to-date |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/swiftlink/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/swift |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
syndiva |
syndiva |
SynDivA was developed to analyze the diversity of synthetic libraries of a Fibronectin domain. |
2022-06-23 |
|
1.0 |
clustalo |
1.2.4 |
To update |
Proteomics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/SynDivA |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/syndiva |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
2 |
2 |
30 |
30 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
30 |
30 |
2 |
2 |
|
|
|
syri |
syri |
Synteny and Rearrangement Identifier |
2025-04-16 |
https://github.com/schneebergerlab/syri |
1.7.1 |
syri |
1.7.1 |
Up-to-date |
Sequence Analysis |
Haplotype mapping, Variant calling, Genotyping, Sequence assembly, Read mapping |
Haplotype mapping, Variant calling, Genotyping, Sequence assembly, Read mapping |
DNA polymorphism, Sequence assembly, DNA structural variation, Mapping, Sequencing |
DNA polymorphism, Sequence assembly, Mapping, Sequencing |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/syri |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/syri |
SyRI |
SyRI |
SyRI is tool for finding genomic rearrangements and local sequence differences from whole-genome assemblies.Genomic differences range from single nucleotide differences to complex structural variations. Current methods typically annotate sequence differences ranging from SNPs to large indels accurately but do not unravel the full complexity of structural rearrangements, including inversions, translocations, and duplications, where highly similar sequence changes in location, orientation, or copy number. Here, we present SyRI, a pairwise whole-genome comparison tool for chromosome-level assemblies. SyRI starts by finding rearranged regions and then searches for differences in the sequences, which are distinguished for residing in syntenic or rearranged regions. This distinction is important as rearranged regions are inherited differently compared to syntenic regions. |
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
7 |
7 |
7 |
7 |
1 |
1 |
https://usegalaxy.fr/published/workflow?id=356dced9687596b7, https://usegalaxy.fr/published/workflow?id=ce4acd38084ee9ef |
|
|
table_compute |
table_compute |
Perform general-purpose table operations |
2019-06-05 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/table_compute |
1.2.4 |
pandas |
|
To update |
Text Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/table_compute |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/table_compute |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1835 |
1950 |
225030 |
226201 |
1673 |
1679 |
13059 |
13124 |
262 |
262 |
16967 |
16967 |
69 |
69 |
735 |
735 |
257027 |
255791 |
3960 |
3839 |
https://dev.workflowhub.eu/workflows/1014?version=1, https://dev.workflowhub.eu/workflows/1083?version=1, https://dev.workflowhub.eu/workflows/1246?version=2, https://dev.workflowhub.eu/workflows/1326?version=3, https://dev.workflowhub.eu/workflows/1382?version=1, https://dev.workflowhub.eu/workflows/1392?version=1, https://usegalaxy.eu/published/workflow?id=020f877513f2d0d1, https://usegalaxy.eu/published/workflow?id=079e2a968d8e6176, https://usegalaxy.eu/published/workflow?id=09c7069ae409c362, https://usegalaxy.eu/published/workflow?id=0ae360bfbb3b2494, https://usegalaxy.eu/published/workflow?id=0bfb81f2a0202b25, https://usegalaxy.eu/published/workflow?id=0f7acf235096b708, https://usegalaxy.eu/published/workflow?id=0fb12e3a127fc4be, https://usegalaxy.eu/published/workflow?id=117177b0c231dc55, https://usegalaxy.eu/published/workflow?id=133b299125ff9905, https://usegalaxy.eu/published/workflow?id=1526d3918b201c72, https://usegalaxy.eu/published/workflow?id=16080c3c1488a8b5, https://usegalaxy.eu/published/workflow?id=171d6fca2c3339e2, https://usegalaxy.eu/published/workflow?id=19bb27eea9bcdb6f, https://usegalaxy.eu/published/workflow?id=1c267e93aa8015e6, https://usegalaxy.eu/published/workflow?id=26deb6f2521742ea, https://usegalaxy.eu/published/workflow?id=2a33d4fcb806e942, https://usegalaxy.eu/published/workflow?id=2e6561d8dadc9e17, https://usegalaxy.eu/published/workflow?id=2f094f5e1f391529, https://usegalaxy.eu/published/workflow?id=34861c3c63048d6b, https://usegalaxy.eu/published/workflow?id=409ac72c9906f16a, https://usegalaxy.eu/published/workflow?id=45c5e0a1e10edc54, https://usegalaxy.eu/published/workflow?id=4c04ac4d83943437, https://usegalaxy.eu/published/workflow?id=4cb25c0bb103f54f, https://usegalaxy.eu/published/workflow?id=518469bc5efb8728, https://usegalaxy.eu/published/workflow?id=5385abe9c2589b69, https://usegalaxy.eu/published/workflow?id=55a9fc5d30392777, https://usegalaxy.eu/published/workflow?id=587e4d5ce25f48da, https://usegalaxy.eu/published/workflow?id=5900578d64e01001, https://usegalaxy.eu/published/workflow?id=5cc732a6b4338bf5, https://usegalaxy.eu/published/workflow?id=60e0b2a28a900178, https://usegalaxy.eu/published/workflow?id=64abcddeb516a712, https://usegalaxy.eu/published/workflow?id=66f2a58637054c16, https://usegalaxy.eu/published/workflow?id=68e8042f11d5a3fd, https://usegalaxy.eu/published/workflow?id=6aa2891bd2b41f32, https://usegalaxy.eu/published/workflow?id=71a7113386b2cdc1, https://usegalaxy.eu/published/workflow?id=71c4ec4805f83cd5, https://usegalaxy.eu/published/workflow?id=7582a48054c44d6e, https://usegalaxy.eu/published/workflow?id=7c80cd57b2de54d4, https://usegalaxy.eu/published/workflow?id=7caa58e36df6ad03, https://usegalaxy.eu/published/workflow?id=7ea91d562a02eb2f, https://usegalaxy.eu/published/workflow?id=805979703dc7cc01, https://usegalaxy.eu/published/workflow?id=82ef590b5821805d, https://usegalaxy.eu/published/workflow?id=895b8f5736bb92bb, https://usegalaxy.eu/published/workflow?id=8c4331f1bac67aba, https://usegalaxy.eu/published/workflow?id=8f9dc5ba61a02815, https://usegalaxy.eu/published/workflow?id=8ff9d3ad20e87819, https://usegalaxy.eu/published/workflow?id=933ab5e7fe13a8e0, https://usegalaxy.eu/published/workflow?id=9791e8aae12d6e63, https://usegalaxy.eu/published/workflow?id=9b4e6c5f2c1babce, https://usegalaxy.eu/published/workflow?id=9e4df2893767591a, https://usegalaxy.eu/published/workflow?id=a6290cdfa12d34ad, https://usegalaxy.eu/published/workflow?id=a639ea0419de1078, https://usegalaxy.eu/published/workflow?id=ae16643c04ad1216, https://usegalaxy.eu/published/workflow?id=ae380023cd06f640, https://usegalaxy.eu/published/workflow?id=af472984b3f3d65f, https://usegalaxy.eu/published/workflow?id=b4bf9e3309d53af3, https://usegalaxy.eu/published/workflow?id=b57c3522bdd7c2d5, https://usegalaxy.eu/published/workflow?id=ca286c2fdc71e960, https://usegalaxy.eu/published/workflow?id=cb3d961914ede12e, https://usegalaxy.eu/published/workflow?id=ccda8222900499a7, https://usegalaxy.eu/published/workflow?id=cda516957bcfcd9c, https://usegalaxy.eu/published/workflow?id=cdf2f02428f5f83f, https://usegalaxy.eu/published/workflow?id=d215a2e554fd83bc, https://usegalaxy.eu/published/workflow?id=d6f7e86d52d43555, https://usegalaxy.eu/published/workflow?id=db03a18167f26399, https://usegalaxy.eu/published/workflow?id=e795e7f59b4de5e6, https://usegalaxy.eu/published/workflow?id=e7e26967cf6cb8d8, https://usegalaxy.eu/published/workflow?id=ea8bb8eefdb4ba7a, https://usegalaxy.eu/published/workflow?id=f698bed6a0867f5f, https://usegalaxy.eu/published/workflow?id=f98f0e0c18222cc0, https://usegalaxy.eu/published/workflow?id=f9b705e53b6d6539, https://usegalaxy.eu/published/workflow?id=fc0b9efa7d2e61e6, https://usegalaxy.org.au/published/workflow?id=0e11619979c2830c, https://usegalaxy.org.au/published/workflow?id=244ea5e94237ebad, https://usegalaxy.org.au/published/workflow?id=5490661d0153962b, https://usegalaxy.org.au/published/workflow?id=75113a1b41904d2a, https://usegalaxy.org.au/published/workflow?id=76a0a3af8de11622, https://usegalaxy.org.au/published/workflow?id=832a30759469d3fe, https://usegalaxy.org.au/published/workflow?id=857e482acfcb2dba, https://usegalaxy.org.au/published/workflow?id=e1fd89e7248b6661, https://usegalaxy.org/published/workflow?id=019be65613876562, https://usegalaxy.org/published/workflow?id=05ef809e2b11154c, https://usegalaxy.org/published/workflow?id=0775d8efad0dac10, https://usegalaxy.org/published/workflow?id=0b85fb10ed25d34e, https://usegalaxy.org/published/workflow?id=0dec1b9dbbb2f425, https://usegalaxy.org/published/workflow?id=1388fe5d8b50bc7c, https://usegalaxy.org/published/workflow?id=13d9db3715f32b37, https://usegalaxy.org/published/workflow?id=16910402667eec78, https://usegalaxy.org/published/workflow?id=170287dcfb9de475, https://usegalaxy.org/published/workflow?id=19ce6cf93298e268, https://usegalaxy.org/published/workflow?id=1c5a7196a442dd02, https://usegalaxy.org/published/workflow?id=1f98df1adba71b98, https://usegalaxy.org/published/workflow?id=226b506d1fc30e96, https://usegalaxy.org/published/workflow?id=23468eea382e6bb4, https://usegalaxy.org/published/workflow?id=25b8b5af30042d76, https://usegalaxy.org/published/workflow?id=28b2550248a54d74, https://usegalaxy.org/published/workflow?id=29ba77708cdafe0f, https://usegalaxy.org/published/workflow?id=2b6245843e632c05, https://usegalaxy.org/published/workflow?id=2b820beaeb49dd64, https://usegalaxy.org/published/workflow?id=305eafecadfa8815, https://usegalaxy.org/published/workflow?id=31ed5a2bcc8da51a, https://usegalaxy.org/published/workflow?id=357225c624e796b5, https://usegalaxy.org/published/workflow?id=36c885b0bc829da3, https://usegalaxy.org/published/workflow?id=375f5142c207a768, https://usegalaxy.org/published/workflow?id=38911ba6f66d80f6, https://usegalaxy.org/published/workflow?id=3d7a9694bcee6db5, https://usegalaxy.org/published/workflow?id=3e703abaeb870f6f, https://usegalaxy.org/published/workflow?id=3fdd7a7907233d58, https://usegalaxy.org/published/workflow?id=405dc14eb02ff234, https://usegalaxy.org/published/workflow?id=438761debd08a9be, https://usegalaxy.org/published/workflow?id=43c39bc86399188f, https://usegalaxy.org/published/workflow?id=462a1176b48eef4a, https://usegalaxy.org/published/workflow?id=46894456a9bec601, https://usegalaxy.org/published/workflow?id=4b92dfd20d48d479, https://usegalaxy.org/published/workflow?id=4ba61941f31f0215, https://usegalaxy.org/published/workflow?id=4f6e8ff94ca4f164, https://usegalaxy.org/published/workflow?id=5361db01e3b6cc0c, https://usegalaxy.org/published/workflow?id=56427a9b9c3848bf, https://usegalaxy.org/published/workflow?id=5aa4b9131c31cb79, https://usegalaxy.org/published/workflow?id=5b540de61a70df64, https://usegalaxy.org/published/workflow?id=5bd6d7af64192b86, https://usegalaxy.org/published/workflow?id=5c85cd8c56b9f6ab, https://usegalaxy.org/published/workflow?id=626260e3c3ee5c08, https://usegalaxy.org/published/workflow?id=63b0ce2faec558d5, https://usegalaxy.org/published/workflow?id=672ca09dce4b0dc3, https://usegalaxy.org/published/workflow?id=68b995393b3142ec, https://usegalaxy.org/published/workflow?id=68be9cfc0c58cb44, https://usegalaxy.org/published/workflow?id=6960b8f6c98a9b9e, https://usegalaxy.org/published/workflow?id=6a2dace98986992a, https://usegalaxy.org/published/workflow?id=6d778eeb176d563c, https://usegalaxy.org/published/workflow?id=6dcb43f86b9cd7dc, https://usegalaxy.org/published/workflow?id=6f2e4b4860413153, https://usegalaxy.org/published/workflow?id=7090bb14a7af15bd, https://usegalaxy.org/published/workflow?id=7185085cbe953cd9, https://usegalaxy.org/published/workflow?id=769ec5a187095b38, https://usegalaxy.org/published/workflow?id=78249d353038002b, https://usegalaxy.org/published/workflow?id=79527e2b83fd5c64, https://usegalaxy.org/published/workflow?id=7a23e64dfa6957ce, https://usegalaxy.org/published/workflow?id=7a4d834e794407d9, https://usegalaxy.org/published/workflow?id=7e56bee496344ddc, https://usegalaxy.org/published/workflow?id=8182055f5ef561f3, https://usegalaxy.org/published/workflow?id=85e2a1d6b1d4e3d7, https://usegalaxy.org/published/workflow?id=870f4988a5cc815e, https://usegalaxy.org/published/workflow?id=87ebf1b5956a61b5, https://usegalaxy.org/published/workflow?id=889b394b38b259eb, https://usegalaxy.org/published/workflow?id=8a15bda6ce7a63ec, https://usegalaxy.org/published/workflow?id=8ae311282a0d27a1, https://usegalaxy.org/published/workflow?id=8cf06b14037a8d5a, https://usegalaxy.org/published/workflow?id=8db9ccf14567d9ba, https://usegalaxy.org/published/workflow?id=918863756ce93725, https://usegalaxy.org/published/workflow?id=9192807702bc3de2, https://usegalaxy.org/published/workflow?id=91ed290805f590de, https://usegalaxy.org/published/workflow?id=931dd3e6b1fae4f5, https://usegalaxy.org/published/workflow?id=958b64b05011d8c0, https://usegalaxy.org/published/workflow?id=962f784745c1b740, https://usegalaxy.org/published/workflow?id=97dcd7285ebd5817, https://usegalaxy.org/published/workflow?id=9b384b774485b2f2, https://usegalaxy.org/published/workflow?id=9ecfaa613a112d78, https://usegalaxy.org/published/workflow?id=a124d41da896779c, https://usegalaxy.org/published/workflow?id=a2b4a868fa9795d1, https://usegalaxy.org/published/workflow?id=a3ff7dbfadbd96e2, https://usegalaxy.org/published/workflow?id=a5bdab0b219b3797, https://usegalaxy.org/published/workflow?id=ab490af27c9ccc80, https://usegalaxy.org/published/workflow?id=abf1aec0f3d48d03, https://usegalaxy.org/published/workflow?id=adca3f2ca63730fe, https://usegalaxy.org/published/workflow?id=affdc1bf42475cc9, https://usegalaxy.org/published/workflow?id=b7b69aaee5202144, https://usegalaxy.org/published/workflow?id=b7ec8d79dc563a93, https://usegalaxy.org/published/workflow?id=b8ed069eea7879e7, https://usegalaxy.org/published/workflow?id=b93a475af82a3d36, https://usegalaxy.org/published/workflow?id=be46c5bb8c06a470, https://usegalaxy.org/published/workflow?id=c07476a937b4e52e, https://usegalaxy.org/published/workflow?id=c478d8de43a3f30f, https://usegalaxy.org/published/workflow?id=c5f4b7b2463f338b, https://usegalaxy.org/published/workflow?id=c66e2738f37a8c16, https://usegalaxy.org/published/workflow?id=c75acc1ab44c121f, https://usegalaxy.org/published/workflow?id=c9474fcce2a21188, https://usegalaxy.org/published/workflow?id=cb810cdaa4915f4b, https://usegalaxy.org/published/workflow?id=cfa7c3d7e69e91d7, https://usegalaxy.org/published/workflow?id=d02b4d7483936b73, https://usegalaxy.org/published/workflow?id=d0847ce8261eb922, https://usegalaxy.org/published/workflow?id=d2dec03b33af1b2f, https://usegalaxy.org/published/workflow?id=d341660f3d1ce8bf, https://usegalaxy.org/published/workflow?id=d6cf3be79a4b7db4, https://usegalaxy.org/published/workflow?id=deea71ccac30c7ea, https://usegalaxy.org/published/workflow?id=e067c4e66f0af362, https://usegalaxy.org/published/workflow?id=e31abcc04c5c69bc, https://usegalaxy.org/published/workflow?id=e325b97b81b10edb, https://usegalaxy.org/published/workflow?id=e500078649dd026c, https://usegalaxy.org/published/workflow?id=e53b695ff681b675, https://usegalaxy.org/published/workflow?id=e817b5b275b4952f, https://usegalaxy.org/published/workflow?id=e9aaa56af9d230d6, https://usegalaxy.org/published/workflow?id=eab7347464872b4c, https://usegalaxy.org/published/workflow?id=eae5ae951abe6761, https://usegalaxy.org/published/workflow?id=ebe7f93204402a5a, https://usegalaxy.org/published/workflow?id=ef6036efe8a03a12, https://usegalaxy.org/published/workflow?id=f5200b7bcceed5d6, https://usegalaxy.org/published/workflow?id=f58aa85ceaa19534, https://usegalaxy.org/published/workflow?id=f794b4b9bb990c80, https://usegalaxy.org/published/workflow?id=f7a3567ba6b57c9c, https://usegalaxy.org/published/workflow?id=f8d85cda81baa77d, https://usegalaxy.org/published/workflow?id=f8ed1ae9d501bb87, https://usegalaxy.org/published/workflow?id=fda29ba2b6c98f8b, https://usegalaxy.org/published/workflow?id=fff1a5c7475b3eeb, https://workflowhub.eu/workflows/1063?version=5, https://workflowhub.eu/workflows/1406?version=1, https://workflowhub.eu/workflows/1479?version=1, https://workflowhub.eu/workflows/1550?version=1, https://workflowhub.eu/workflows/1567?version=1, https://workflowhub.eu/workflows/1708?version=1, https://workflowhub.eu/workflows/1713?version=1, https://workflowhub.eu/workflows/1789?version=1, https://workflowhub.eu/workflows/561?version=11, https://workflowhub.eu/workflows/659?version=1 |
microbiome/pathogen-detection-from-nanopore-foodborne-data, proteomics/neoantigen-hla-binding-novel-peptides, single-cell/bulk-deconvolution-evaluate, single-cell/bulk-music-2-preparescref, single-cell/bulk-music-3-preparebulk, single-cell/scrna-case_cell-cycle, transcriptomics/ref-based, transcriptomics/rna-seq-analysis-clustering-viz |
|
tabular_to_fastq |
tabular_to_fastq |
Tabular to FASTQ converter |
2019-06-21 |
https://github.com/galaxyproject/sequence_utils |
1.1.5 |
galaxy_sequence_utils |
1.2.0 |
To update |
Fastq Manipulation |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/tabular_to_fastq |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/galaxy_sequence_utils/tabular_to_fastq |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
480 |
528 |
9526 |
11269 |
689 |
2285 |
10525 |
31353 |
84 |
113 |
862 |
1151 |
11 |
11 |
21 |
21 |
43794 |
20934 |
2937 |
1264 |
https://usegalaxy.eu/published/workflow?id=5e1b048040ea7535, https://usegalaxy.eu/published/workflow?id=8c7958cb05fba814, https://usegalaxy.eu/published/workflow?id=9382f9bbbdddb5ad, https://usegalaxy.eu/published/workflow?id=acb9131e84de1ae0, https://usegalaxy.org.au/published/workflow?id=533dbb3242ee4255, https://usegalaxy.org/published/workflow?id=14f62361a15f8a24, https://usegalaxy.org/published/workflow?id=1e1a299825f27f11, https://usegalaxy.org/published/workflow?id=1efb485f123233eb, https://usegalaxy.org/published/workflow?id=41b181f1d763e419, https://usegalaxy.org/published/workflow?id=4266aa248d5b1ea4, https://usegalaxy.org/published/workflow?id=5004f1087f5e87db, https://usegalaxy.org/published/workflow?id=5de035c08af915ea, https://usegalaxy.org/published/workflow?id=9304cc9410a96323, https://usegalaxy.org/published/workflow?id=bb9ee8e05f7042a9 |
single-cell/scrna-data-ingest |
|
tag_pileup_frequency |
tag_pileup_frequency |
Contains a tool that generates a frequency pileup of the 5' ends of aligned reads in a BAM filerelative to reference points in a BED file. |
2016-05-05 |
https://github.com/seqcode/cegr-tools/tree/master/src/org/seqcode/cegrtools/tagpileup |
1.0.2 |
openjdk |
|
To update |
Statistics, SAM, Genomic Interval Operations |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/tag_pileup_frequency |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/tag_pileup_frequency |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
13 |
16 |
112 |
164 |
40 |
75 |
703 |
870 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1034 |
815 |
91 |
53 |
|
|
|
tasmanian_mismatch |
tasmanian_mismatch |
Analysis of positional mismatches |
2020-04-19 |
https://github.com/nebiolabs/tasmanian-mismatch |
1.0.9 |
tasmanian-mismatch |
1.0.9 |
Up-to-date |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/tasmanian_mismatch |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/tasmanian_mismatch |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8 |
8 |
13 |
13 |
31 |
31 |
263 |
263 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
276 |
276 |
39 |
39 |
https://usegalaxy.org/published/workflow?id=1ddabc7d272dc702, https://usegalaxy.org/published/workflow?id=cdea4f88ccbd155f |
|
|
taxonkit |
name2taxid, profile2cami |
TaxonKit - A Practical and Efficient NCBI Taxonomy Toolkit |
2024-07-26 |
https://bioinf.shenwei.me/taxonkit/ |
0.20.0 |
taxonkit |
0.20.0 |
Up-to-date |
Metagenomics |
Formatting, Data retrieval |
Formatting, Data retrieval |
Taxonomy, Biotechnology, Ecology |
Taxonomy, Biotechnology, Ecology |
iuc |
https://github.com/shenwei356/taxonkit |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/taxonkit |
taxonkit |
TaxonKit |
TaxonKit is a practical and efficient NCBI taxonomy toolkit. |
|
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
410 |
410 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
410 |
410 |
4 |
4 |
https://usegalaxy.eu/published/workflow?id=cf0159c14418525e, https://usegalaxy.eu/published/workflow?id=e4dabaf57668dbd1 |
|
|
taxonomy_filter_refseq |
taxonomy_filter_refseq |
Filter RefSeq by taxonomy |
2019-01-13 |
https://github.com/pvanheus/ncbitaxonomy |
0.3.0 |
rust-ncbitaxonomy |
1.0.7 |
To update |
Sequence Analysis, Genome annotation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/taxonomy_filter_refseq |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
taxonomy_krona_chart |
taxonomy_krona_chart |
Krona pie chart from taxonomic profile |
2015-08-06 |
http://sourceforge.net/projects/krona/ |
2.7.1+galaxy0 |
krona |
2.8.1 |
To update |
Assembly |
Visualisation |
Visualisation |
Metagenomics |
Metagenomics |
crs4 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/taxonomy_krona_chart |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/taxonomy_krona_chart |
krona |
Krona |
Krona creates interactive HTML5 charts of hierarchical data (such as taxonomic abundance in a metagenome). |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
0 |
5929 |
6170 |
40535 |
41852 |
5636 |
6644 |
28814 |
35461 |
1722 |
1722 |
9176 |
9176 |
110 |
110 |
362 |
362 |
86851 |
78887 |
14646 |
13397 |
https://dev.workflowhub.eu/workflows/1064?version=1, https://dev.workflowhub.eu/workflows/1067?version=1, https://dev.workflowhub.eu/workflows/1073?version=1, https://dev.workflowhub.eu/workflows/1088?version=1, https://dev.workflowhub.eu/workflows/1095?version=1, https://dev.workflowhub.eu/workflows/1097?version=1, https://dev.workflowhub.eu/workflows/1101?version=1, https://usegalaxy.eu/published/workflow?id=007ce6405d196df3, https://usegalaxy.eu/published/workflow?id=0590554db9794d13, https://usegalaxy.eu/published/workflow?id=05f5f040337786bf, https://usegalaxy.eu/published/workflow?id=08e25b733cd796e6, https://usegalaxy.eu/published/workflow?id=08eb5e55109c4d9c, https://usegalaxy.eu/published/workflow?id=096b75501c8e0888, https://usegalaxy.eu/published/workflow?id=0bafeb17c21ebc9c, https://usegalaxy.eu/published/workflow?id=10101558b211a782, https://usegalaxy.eu/published/workflow?id=14714876dda7186d, https://usegalaxy.eu/published/workflow?id=181e751be8dd9abc, https://usegalaxy.eu/published/workflow?id=19de5cbae7f48103, https://usegalaxy.eu/published/workflow?id=2cf09adb1ed6c3ec, https://usegalaxy.eu/published/workflow?id=309fc4fc2e0da89c, https://usegalaxy.eu/published/workflow?id=39d36a7ce0ef268d, https://usegalaxy.eu/published/workflow?id=437704898229dfb6, https://usegalaxy.eu/published/workflow?id=44e16f0782f54111, https://usegalaxy.eu/published/workflow?id=4a764275d4bf9f31, https://usegalaxy.eu/published/workflow?id=4d32b1b3ac0a7161, https://usegalaxy.eu/published/workflow?id=4f0daf8e9dd54127, https://usegalaxy.eu/published/workflow?id=4f21205e71cabd37, https://usegalaxy.eu/published/workflow?id=57cfe5062c8e01bf, https://usegalaxy.eu/published/workflow?id=5f0faac42b0a5062, https://usegalaxy.eu/published/workflow?id=628062a8cf93261f, https://usegalaxy.eu/published/workflow?id=79b4ae4403772098, https://usegalaxy.eu/published/workflow?id=7ab70660e6235cf0, https://usegalaxy.eu/published/workflow?id=86465932556bc96c, https://usegalaxy.eu/published/workflow?id=87cc0cd143a12c41, https://usegalaxy.eu/published/workflow?id=8deb08d4f228e198, https://usegalaxy.eu/published/workflow?id=8ee3b635c1c380cd, https://usegalaxy.eu/published/workflow?id=9472be79da012999, https://usegalaxy.eu/published/workflow?id=94c3d329c31c712f, https://usegalaxy.eu/published/workflow?id=994e5ff1df7d6c9e, https://usegalaxy.eu/published/workflow?id=9cbba5de2cbeeb0f, https://usegalaxy.eu/published/workflow?id=a337bfb2eb1e583f, https://usegalaxy.eu/published/workflow?id=a403c661bf1bc4fa, https://usegalaxy.eu/published/workflow?id=a84bac86ec183d46, https://usegalaxy.eu/published/workflow?id=a8f829deb69b30ab, https://usegalaxy.eu/published/workflow?id=ad8b6d73c9654305, https://usegalaxy.eu/published/workflow?id=b14845359b702444, https://usegalaxy.eu/published/workflow?id=b2b46e71046b1999, https://usegalaxy.eu/published/workflow?id=b37800d990cceb83, https://usegalaxy.eu/published/workflow?id=b66e1d8171e6dac2, https://usegalaxy.eu/published/workflow?id=b86f24473a282ef9, https://usegalaxy.eu/published/workflow?id=b91a380ceaa0342b, https://usegalaxy.eu/published/workflow?id=bd4e3cdc7f29049b, https://usegalaxy.eu/published/workflow?id=c1e26abe61c69688, https://usegalaxy.eu/published/workflow?id=c2b7ec5aacfc6107, https://usegalaxy.eu/published/workflow?id=c3aa516e78ca4191, https://usegalaxy.eu/published/workflow?id=c67d2e75eeb4fd19, https://usegalaxy.eu/published/workflow?id=ca80039c4933aa0a, https://usegalaxy.eu/published/workflow?id=cb2df493f5e334f7, https://usegalaxy.eu/published/workflow?id=ce21961260fe4351, https://usegalaxy.eu/published/workflow?id=cfd37e9e307e5d3d, https://usegalaxy.eu/published/workflow?id=d05c6f0f3205fbd2, https://usegalaxy.eu/published/workflow?id=d0ae255151450dad, https://usegalaxy.eu/published/workflow?id=d88145e7475e0b7b, https://usegalaxy.eu/published/workflow?id=dadca1020f586338, https://usegalaxy.eu/published/workflow?id=dfc2c53ac3103eff, https://usegalaxy.eu/published/workflow?id=ed0ad728cf21702b, https://usegalaxy.eu/published/workflow?id=ee0005a5487653ba, https://usegalaxy.eu/published/workflow?id=ef6556d65ce5d72c, https://usegalaxy.eu/published/workflow?id=f21d6a40a10a8ae8, https://usegalaxy.eu/published/workflow?id=fb806b88850f3427, https://usegalaxy.eu/published/workflow?id=fdca6c9d394986bf, https://usegalaxy.eu/published/workflow?id=fde21b5f5c169114, https://usegalaxy.fr/published/workflow?id=09e8293456ee6d99, https://usegalaxy.fr/published/workflow?id=c4f6062e51d0f45e, https://usegalaxy.org.au/published/workflow?id=131636a795bac485, https://usegalaxy.org.au/published/workflow?id=2717e90438c7fb8c, https://usegalaxy.org.au/published/workflow?id=4c7e0703aace6aa3, https://usegalaxy.org.au/published/workflow?id=6b7e565258a9da2a, https://usegalaxy.org.au/published/workflow?id=a335b9c9103b57ad, https://usegalaxy.org.au/published/workflow?id=d9ba165e6ae55417, https://usegalaxy.org.au/published/workflow?id=ed3e48a73b5aaa56, https://usegalaxy.org/published/workflow?id=21161075002d6778, https://usegalaxy.org/published/workflow?id=3011f5dbf884c9bc, https://usegalaxy.org/published/workflow?id=45f959d5bf505b15, https://usegalaxy.org/published/workflow?id=4b5f6b5d4f36e38b, https://usegalaxy.org/published/workflow?id=5b74b780d3955eb3, https://usegalaxy.org/published/workflow?id=60f0d0d5d6e93941, https://usegalaxy.org/published/workflow?id=6f090b2c259847d2, https://usegalaxy.org/published/workflow?id=7321c6ad5425d347, https://usegalaxy.org/published/workflow?id=775335812a6b7a61, https://usegalaxy.org/published/workflow?id=8151be18aab3a3c6, https://usegalaxy.org/published/workflow?id=8f5904693b5f74f4, https://usegalaxy.org/published/workflow?id=a63927dd19759714, https://usegalaxy.org/published/workflow?id=b68ec42db8953569, https://usegalaxy.org/published/workflow?id=b7817a12dbee583c, https://usegalaxy.org/published/workflow?id=bc01b8b203ecc754, https://usegalaxy.org/published/workflow?id=c3ea8fa3bb202dc6, https://usegalaxy.org/published/workflow?id=cade0c5c11978323, https://usegalaxy.org/published/workflow?id=d653eaefcf6b4697, https://usegalaxy.org/published/workflow?id=e12324f5e3b930fd, https://workflowhub.eu/workflows/100?version=1, https://workflowhub.eu/workflows/101?version=1, https://workflowhub.eu/workflows/1059?version=1, https://workflowhub.eu/workflows/1199?version=2, https://workflowhub.eu/workflows/124?version=1, https://workflowhub.eu/workflows/1270?version=2, https://workflowhub.eu/workflows/1273?version=2, https://workflowhub.eu/workflows/1439?version=1, https://workflowhub.eu/workflows/1451?version=2, https://workflowhub.eu/workflows/1465?version=1, https://workflowhub.eu/workflows/1466?version=2, https://workflowhub.eu/workflows/1470?version=1, https://workflowhub.eu/workflows/1472?version=1, https://workflowhub.eu/workflows/1473?version=1, https://workflowhub.eu/workflows/1483?version=1, https://workflowhub.eu/workflows/53?version=1, https://workflowhub.eu/workflows/624?version=1 |
microbiome/beer-data-analysis, microbiome/general-tutorial, microbiome/metatranscriptomics, microbiome/metatranscriptomics-short, microbiome/mothur-miseq-sop, microbiome/nanopore-16S-metagenomics, microbiome/pathogen-detection-from-nanopore-foodborne-data, microbiome/taxonomic-profiling |
|
taxpasta |
taxpasta |
standardise taxonomic profiles |
2023-08-30 |
https://taxpasta.readthedocs.io/en/latest/ |
0.7.0 |
taxpasta |
0.7.0 |
Up-to-date |
Sequence Analysis |
Standardisation and normalisation, Aggregation, Formatting, Conversion |
Standardisation and normalisation, Aggregation, Formatting, Conversion |
Taxonomy, Metagenomics |
Taxonomy, Metagenomics |
iuc |
https://github.com/taxprofiler/taxpasta |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/taxpasta |
taxpasta |
taxpasta |
TAXonomic Profile Aggregation and STAndardisationThe main purpose of taxpasta is to standardise taxonomic profiles created by a range of bioinformatics tools. We call those tools taxonomic profilers. They each come with their own particular tabular output format. Across the profilers, relative abundances can be reported in read counts, fractions, or percentages, as well as any number of additional columns with extra information. We therefore decided to take the lessons learnt to heart and provide our own solution to deal with this pasticcio. With taxpasta you can ingest all of those formats and, at a minimum, output taxonomy identifiers and their integer counts. Taxpasta can not only standardise profiles but also merge them across samples for the same profiler into a single table. |
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
17 |
17 |
72 |
72 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
18 |
18 |
90 |
90 |
18 |
18 |
https://usegalaxy.eu/published/workflow?id=b14845359b702444, https://usegalaxy.eu/published/workflow?id=cb2df493f5e334f7 |
|
|
tb_variant_filter |
tb_variant_filter |
M. tuberculosis H37Rv VCF filter |
2019-10-03 |
https://github.com/COMBAT-TB/tb_variant_filter |
0.4.0 |
tb_variant_filter |
0.4.0 |
Up-to-date |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/COMBAT-TB/tb_variant_filter |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/tb_variant_filter |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
518 |
546 |
33883 |
34183 |
312 |
312 |
21754 |
21754 |
89 |
89 |
6762 |
6762 |
1 |
1 |
3000 |
3000 |
65699 |
65399 |
948 |
920 |
https://dev.workflowhub.eu/workflows/1008?version=1, https://dev.workflowhub.eu/workflows/1009?version=1, https://dev.workflowhub.eu/workflows/1069?version=2, https://dev.workflowhub.eu/workflows/1305?version=2, https://dev.workflowhub.eu/workflows/1309?version=2, https://usegalaxy.eu/published/workflow?id=2b25eaebd3987612, https://usegalaxy.eu/published/workflow?id=2c79eee5ca5a3b09, https://usegalaxy.eu/published/workflow?id=2ebf65efe8ca4a7f, https://usegalaxy.eu/published/workflow?id=3a8fde248a4d0383, https://usegalaxy.eu/published/workflow?id=3ff4dbcc7a602e6b, https://usegalaxy.eu/published/workflow?id=461d71caea871db8, https://usegalaxy.eu/published/workflow?id=65249196143d7930, https://usegalaxy.eu/published/workflow?id=6d333ed886aab471, https://usegalaxy.eu/published/workflow?id=8a248dda0131e8ad, https://usegalaxy.eu/published/workflow?id=a183da6b56cd1d60, https://usegalaxy.eu/published/workflow?id=c38e3ac59d8b86d6, https://usegalaxy.org.au/published/workflow?id=5693811cd933d2a2, https://usegalaxy.org.au/published/workflow?id=a61d4bda54de7cd1, https://usegalaxy.org/published/workflow?id=e7ce46762faccaac, https://workflowhub.eu/workflows/1035?version=1, https://workflowhub.eu/workflows/1569?version=1, https://workflowhub.eu/workflows/1573?version=1, https://workflowhub.eu/workflows/1647?version=1 |
evolution/mtb_transmission, variant-analysis/tb-variant-analysis |
|
tbl2gff3 |
tbl2gff3 |
Table to GFF3 |
2020-07-07 |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 |
1.2 |
bcbiogff |
0.6.6 |
To update |
Convert Formats, Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/tbl2gff3 |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
603 |
603 |
2276 |
2276 |
96 |
96 |
296 |
296 |
138 |
138 |
576 |
576 |
12 |
12 |
47 |
47 |
3195 |
3195 |
849 |
849 |
https://dev.workflowhub.eu/workflows/1136?version=2, https://dev.workflowhub.eu/workflows/1168?version=2, https://usegalaxy.eu/published/workflow?id=152223c8aed27357, https://usegalaxy.eu/published/workflow?id=4ddbffe4b3fef275, https://usegalaxy.org.au/published/workflow?id=2e29b21cdec7d0cc, https://usegalaxy.org/published/workflow?id=547f86db467bf620, https://workflowhub.eu/workflows/1488?version=1, https://workflowhub.eu/workflows/1513?version=1 |
genome-annotation/amr-gene-detection, genome-annotation/bacterial-genome-annotation |
|
tbprofiler |
tb_profiler_profile |
Processes M. tuberculosis sequence data to infer strain type and identify known drug resistance markers. |
2019-04-02 |
https://github.com/jodyphelan/TBProfiler |
6.6.4 |
tb-profiler |
6.6.5 |
To update |
Sequence Analysis |
Antimicrobial resistance prediction |
Antimicrobial resistance prediction |
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/tb-profiler |
tb-profiler |
tb-profiler |
A tool for drug resistance prediction from _M. tuberculosis_ genomic data (sequencing reads, alignments or variants). |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
386 |
416 |
10098 |
10173 |
431 |
431 |
9375 |
9375 |
170 |
170 |
8119 |
8119 |
0 |
0 |
0 |
0 |
27667 |
27592 |
1017 |
987 |
https://dev.workflowhub.eu/workflows/1010?version=1, https://dev.workflowhub.eu/workflows/1069?version=2, https://dev.workflowhub.eu/workflows/1314?version=2, https://usegalaxy.eu/published/workflow?id=2b25eaebd3987612, https://usegalaxy.eu/published/workflow?id=2c79eee5ca5a3b09, https://usegalaxy.eu/published/workflow?id=3ff4dbcc7a602e6b, https://usegalaxy.eu/published/workflow?id=461d71caea871db8, https://usegalaxy.eu/published/workflow?id=89ed570bc0703472, https://usegalaxy.eu/published/workflow?id=c38e3ac59d8b86d6, https://usegalaxy.eu/published/workflow?id=d0d6dae0d1eecc21, https://usegalaxy.org.au/published/workflow?id=5693811cd933d2a2, https://usegalaxy.org.au/published/workflow?id=a61d4bda54de7cd1, https://usegalaxy.org/published/workflow?id=e7ce46762faccaac, https://workflowhub.eu/workflows/1035?version=1, https://workflowhub.eu/workflows/1564?version=1, https://workflowhub.eu/workflows/1647?version=1 |
evolution/mtb_transmission, variant-analysis/tb-variant-analysis |
|
tbvcfreport |
tbvcfreport |
Generate HTML report from SnpEff M.tuberculosis VCF(s) |
2019-08-29 |
https://github.com/COMBAT-TB/tbvcfreport |
1.0.1 |
tbvcfreport |
1.0.1 |
Up-to-date |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/tbvcfreport |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
335 |
353 |
5946 |
5996 |
383 |
383 |
7199 |
7199 |
84 |
84 |
3177 |
3177 |
0 |
0 |
0 |
0 |
16372 |
16322 |
820 |
802 |
https://dev.workflowhub.eu/workflows/1069?version=2, https://usegalaxy.eu/published/workflow?id=2b25eaebd3987612, https://usegalaxy.eu/published/workflow?id=2c79eee5ca5a3b09, https://usegalaxy.eu/published/workflow?id=3ff4dbcc7a602e6b, https://usegalaxy.eu/published/workflow?id=461d71caea871db8, https://usegalaxy.eu/published/workflow?id=c38e3ac59d8b86d6, https://usegalaxy.org.au/published/workflow?id=5693811cd933d2a2, https://usegalaxy.org.au/published/workflow?id=a61d4bda54de7cd1, https://usegalaxy.org/published/workflow?id=e7ce46762faccaac, https://workflowhub.eu/workflows/1035?version=1, https://workflowhub.eu/workflows/1647?version=1 |
variant-analysis/tb-variant-analysis |
|
te_finder |
te_finder |
Transposable element insertions finder |
2022-08-08 |
https://github.com/VistaSohrab/TEfinder |
1.0.1 |
samtools |
1.22.1 |
To update |
Sequence Analysis |
Genome indexing, Variant calling, PCR primer design |
Genome indexing, Variant calling, PCR primer design |
Sequencing, Mobile genetic elements, Workflows, Evolutionary biology, Genetic variation |
Sequencing, Mobile genetic elements, Workflows, Evolutionary biology, Genetic variation |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/te_finder/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/te_finder |
tefinder |
TEfinder |
A Bioinformatics Pipeline for Detecting New Transposable Element Insertion Events in Next-Generation Sequencing Data.A bioinformatics tool for detecting novel transposable element insertions.TEfinder uses discordant reads to detect novel transposable element insertion events in paired-end sample sequencing data. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
23 |
23 |
209 |
209 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
209 |
209 |
23 |
23 |
|
|
|
telescope_assign |
telescope_assign |
Single locus resolution of Transposable ELEment expression. |
2019-09-03 |
https://github.com/mlbendall/telescope/ |
1.0.3 |
telescope |
1.0.3 |
Up-to-date |
Genome annotation |
Essential dynamics, Sequence trimming, RNA-Seq quantification, Expression analysis, Read mapping |
Essential dynamics, Sequence trimming, RNA-Seq quantification, Expression analysis, Read mapping |
RNA-Seq, Transcriptomics, Mapping, Gene transcripts, Sequence assembly |
RNA-Seq, Transcriptomics, Mapping, Gene transcripts, Sequence assembly |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/telescope |
Telescope-expression |
Telescope |
Telescope is a tool for the characterization of the retrotranscriptome by accurate estimation of transposable element expression and the quantification of transposable element expression using RNA-seq.It can be used for Statistical Performance of TE Quantification Methods.All scripts needed to examine the sensitivity and biases of computational approaches for quantifying TE expression: 1) unique counts, 2) best counts, 3) RepEnrich, 4) TEtranscripts, 5) RSEM, 6) SalmonTE, and 7) Telescope. |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
tesseract |
tesseract |
Tesseract is an OCR engine with support for unicode and the ability to recognize more than 100 languages out of the box. |
2025-06-18 |
https://github.com/tesseract-ocr/tesseract |
5.5.1 |
tesseract |
3.04.01 |
To update |
Natural Language Processing |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/tesseract/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/tesseract |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
tetoolkit |
tetoolkit_tetranscripts |
The TEToolkit suite improves the bioinformatic analysis of repetitive sequences, particularly transposable elements, in order to elucidate novel (and previously ignored) biological insights of their functions in development and diseases. |
2020-04-10 |
http://hammelllab.labsites.cshl.edu/software/ |
2.2.3 |
tetranscripts |
2.2.3 |
Up-to-date |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/mhammell-laboratory/TEtranscripts |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/tetoolkit |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
85 |
85 |
1119 |
1119 |
0 |
0 |
0 |
0 |
4 |
4 |
127 |
127 |
0 |
0 |
0 |
0 |
1246 |
1246 |
89 |
89 |
|
|
|
tetyper |
tetyper |
Type a specific transposable element (TE) of interest from paired-end sequencing data. |
2019-11-23 |
https://github.com/aesheppard/TETyper |
1.1 |
tetyper |
1.1 |
Up-to-date |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/tetyper |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/tetyper |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
21 |
21 |
107 |
113 |
49 |
49 |
163 |
163 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
276 |
270 |
70 |
70 |
|
|
|
tn93 |
tn93_readreduce, tn93, tn93_cluster, tn93_filter |
Compute distances between sequences |
2018-06-06 |
https://github.com/veg/tn93/ |
1.0.15 |
tn93 |
1.0.15 |
Up-to-date |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/tn93/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/tn93 |
|
|
|
|
4 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
20 |
20 |
1920 |
1920 |
97 |
97 |
2610 |
2610 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4530 |
4530 |
117 |
117 |
|
|
|
tooldistillator |
tooldistillator, tooldistillator_summarize |
ToolDistillator extract and aggregate information from different tool outputs to JSON parsable files |
2024-04-30 |
https://gitlab.com/ifb-elixirfr/abromics/tooldistillator |
1.0.0 |
tooldistillator |
1.0.0 |
Up-to-date |
Sequence Analysis |
Data parsing |
|
Microbiology, Bioinformatics, Sequence analysis |
Microbiology, Bioinformatics, Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/tooldistillator |
tooldistillator |
ToolDistillator |
ToolDistillator is a tool to extract information from output files of specific tools, expose it as JSON files, and aggregate over several tools.It can produce both a single file to each tool or a summarized file from a set of reports. |
|
2 |
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
51 |
51 |
779 |
779 |
83 |
83 |
617 |
617 |
0 |
0 |
0 |
0 |
6 |
6 |
6503 |
6503 |
7899 |
7899 |
140 |
140 |
https://usegalaxy.eu/published/workflow?id=0404013d5c27210d, https://usegalaxy.eu/published/workflow?id=0a82eb8b44d9d502, https://usegalaxy.eu/published/workflow?id=0abd32dbc5207b88, https://usegalaxy.eu/published/workflow?id=0c47571d20535426, https://usegalaxy.eu/published/workflow?id=1ce523ef51f47134, https://usegalaxy.eu/published/workflow?id=2c1a6da84d891cf2, https://usegalaxy.eu/published/workflow?id=2fa2f67603772413, https://usegalaxy.eu/published/workflow?id=3303a04887a47675, https://usegalaxy.eu/published/workflow?id=34df701aa23a9fb3, https://usegalaxy.eu/published/workflow?id=36ea584e0f60893e, https://usegalaxy.eu/published/workflow?id=3d937648809ca4e7, https://usegalaxy.eu/published/workflow?id=41d207d06a32ba05, https://usegalaxy.eu/published/workflow?id=4216424f032c055f, https://usegalaxy.eu/published/workflow?id=47e14222073e7192, https://usegalaxy.eu/published/workflow?id=4a218fb93d78ba67, https://usegalaxy.eu/published/workflow?id=61948fcaefa1418a, https://usegalaxy.eu/published/workflow?id=6b69ab27c565257b, https://usegalaxy.eu/published/workflow?id=723e718f37e9ab91, https://usegalaxy.eu/published/workflow?id=7e48134082dab0a3, https://usegalaxy.eu/published/workflow?id=8792eaecb69fbc26, https://usegalaxy.eu/published/workflow?id=884a4415b669690c, https://usegalaxy.eu/published/workflow?id=a18aed4b03ffd27e, https://usegalaxy.eu/published/workflow?id=aafcfcb585c5ca75, https://usegalaxy.eu/published/workflow?id=abe85758e77c78e6, https://usegalaxy.eu/published/workflow?id=b1afc8d1e81fc904, https://usegalaxy.eu/published/workflow?id=b203dec6ee6da2fd, https://usegalaxy.eu/published/workflow?id=b93333efdab316d8, https://usegalaxy.eu/published/workflow?id=bb63b5bb983fd49c, https://usegalaxy.eu/published/workflow?id=bcd50e655809cfcb, https://usegalaxy.eu/published/workflow?id=c14d2e8b3c191bc4, https://usegalaxy.eu/published/workflow?id=c930a54a30dcc7e3, https://usegalaxy.eu/published/workflow?id=d8db0b2e30370b84, https://usegalaxy.eu/published/workflow?id=dfb8e0f3c534000e, https://usegalaxy.eu/published/workflow?id=e37cc0b64774561b, https://usegalaxy.eu/published/workflow?id=e532d98f4b368666, https://usegalaxy.eu/published/workflow?id=ebb131f2a6172081, https://usegalaxy.eu/published/workflow?id=f30f8e7dcd50cd0d, https://usegalaxy.eu/published/workflow?id=fca458178b3c794a, https://usegalaxy.org/published/workflow?id=04c5ea133de3204c, https://usegalaxy.org/published/workflow?id=0e30324072570abb, https://usegalaxy.org/published/workflow?id=1be5c982c2d36a6c, https://usegalaxy.org/published/workflow?id=2078a54de1f2628d, https://usegalaxy.org/published/workflow?id=2a782ad24271f570, https://usegalaxy.org/published/workflow?id=2b4b1fe82258f303, https://usegalaxy.org/published/workflow?id=323c651ca583c9e5, https://usegalaxy.org/published/workflow?id=3940186d02245b1d, https://usegalaxy.org/published/workflow?id=3c177fdf38311118, https://usegalaxy.org/published/workflow?id=4161cfd67ed94b5d, https://usegalaxy.org/published/workflow?id=4d1279007d0137fa, https://usegalaxy.org/published/workflow?id=4f698eaeef30e364, https://usegalaxy.org/published/workflow?id=4f8bdd61c524b901, https://usegalaxy.org/published/workflow?id=524602abe59b18f7, https://usegalaxy.org/published/workflow?id=5cd56232e873beab, https://usegalaxy.org/published/workflow?id=623fc80c7f91a33a, https://usegalaxy.org/published/workflow?id=649cdc14757e5755, https://usegalaxy.org/published/workflow?id=8cb8a588a0495cfa, https://usegalaxy.org/published/workflow?id=993534c11310a207, https://usegalaxy.org/published/workflow?id=9ac1e4efe310b3b3, https://usegalaxy.org/published/workflow?id=9e5c5ddb60a24889, https://usegalaxy.org/published/workflow?id=9f68718f025bed30, https://usegalaxy.org/published/workflow?id=aaf8e740b3f8e2c0, https://usegalaxy.org/published/workflow?id=b6a795834009ce06, https://usegalaxy.org/published/workflow?id=c454c930ccfb0d3f, https://usegalaxy.org/published/workflow?id=d2a5f6a5181aada5, https://usegalaxy.org/published/workflow?id=de9bf4c1024f8d53, https://usegalaxy.org/published/workflow?id=dfd73857c0eb2a21, https://usegalaxy.org/published/workflow?id=ef187f85b103d858, https://usegalaxy.org/published/workflow?id=f378960ee55f567e, https://usegalaxy.org/published/workflow?id=f4d623a19b32370e, https://usegalaxy.org/published/workflow?id=fde774a049875466, https://workflowhub.eu/workflows/1043?version=9, https://workflowhub.eu/workflows/1049?version=7, https://workflowhub.eu/workflows/1050?version=11, https://workflowhub.eu/workflows/1052?version=11 |
|
|
tracegroomer |
tracegroomer |
TraceGroomer is a solution for formatting and normalising Tracer metabolomics given file(s), to produce the .csv files which are ready for DIMet tool. |
2024-03-28 |
https://github.com/cbib/TraceGroomer |
0.1.4 |
tracegroomer |
0.1.4 |
Up-to-date |
Metabolomics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/Tracegroomer |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/tracegroomer |
|
|
|
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
11 |
11 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
41 |
41 |
52 |
52 |
5 |
5 |
https://usegalaxy.fr/published/workflow?id=879408d684923861 |
|
|
tracy |
tracy_align, tracy_assemble, tracy_basecall, tracy_decompose |
A suite tools for basecalling, alignment, assembly and deconvolution of Sanger chromatograms using tracy. |
2021-10-12 |
https://github.com/gear-genomics/tracy/ |
0.7.8 |
tracy |
0.8.1 |
To update |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/tracy |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/tracy |
|
|
|
|
0 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
46 |
46 |
3649 |
3649 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3649 |
3649 |
46 |
46 |
|
|
|
transdecoder |
transdecoder |
TransDecoder finds coding regions within transcripts |
2015-11-09 |
https://transdecoder.github.io/ |
5.5.0 |
transdecoder |
5.7.1 |
To update |
Transcriptomics, RNA |
Coding region prediction, de Novo sequencing, De-novo assembly |
Coding region prediction, de Novo sequencing, De-novo assembly |
Genomics, Gene transcripts, RNA-Seq, Gene expression, Sequence assembly, Whole genome sequencing |
Genomics, Gene transcripts, RNA-Seq, Gene expression, Sequence assembly, Whole genome sequencing |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/transdecoder |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/transdecoder |
TransDecoder |
TransDecoder |
TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1040 |
1093 |
6751 |
7408 |
1166 |
1166 |
6047 |
6047 |
359 |
391 |
2953 |
3250 |
35 |
35 |
465 |
467 |
17172 |
16216 |
2685 |
2600 |
https://dev.workflowhub.eu/workflows/1306?version=2, https://usegalaxy.eu/published/workflow?id=0ab3e47ebd3b520e, https://usegalaxy.eu/published/workflow?id=24eaa682897379c8, https://usegalaxy.eu/published/workflow?id=5be158931abca947, https://usegalaxy.eu/published/workflow?id=9a60ecf98d4f8134, https://usegalaxy.org.au/published/workflow?id=c04a62f528a69e79, https://workflowhub.eu/workflows/1716?version=1, https://workflowhub.eu/workflows/37?version=1, https://workflowhub.eu/workflows/38?version=1, https://workflowhub.eu/workflows/39?version=1, https://workflowhub.eu/workflows/40?version=1, https://workflowhub.eu/workflows/879?version=1 |
transcriptomics/full-de-novo |
|
transit |
gff_to_prot, transit_gumbel, transit_hmm, transit_resampling, transit_tn5gaps |
TRANSIT |
2019-03-01 |
https://github.com/mad-lab/transit/ |
3.2.3 |
transit |
3.3.19 |
To update |
Genome annotation |
Transposon prediction |
Transposon prediction |
DNA, Sequencing, Mobile genetic elements |
DNA, Sequencing, Mobile genetic elements |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/transit |
transit |
TRANSIT |
A tool for the analysis of Tn-Seq data. It provides an easy to use graphical interface and access to three different analysis methods that allow the user to determine essentiality in a single condition as well as between conditions. |
|
5 |
5 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
5 |
5 |
0 |
92 |
93 |
1118 |
1157 |
197 |
212 |
2634 |
3717 |
37 |
37 |
501 |
501 |
0 |
0 |
0 |
0 |
5375 |
4253 |
342 |
326 |
https://dev.workflowhub.eu/workflows/1149?version=2, https://workflowhub.eu/workflows/1530?version=1 |
genome-annotation/tnseq |
|
transtermhp |
transtermhp |
Finds rho-independent transcription terminators in bacterial genomes |
2015-10-08 |
https://transterm.cbcb.umd.edu |
|
transtermhp |
2.09 |
To update |
Sequence Analysis |
Transcriptional regulatory element prediction |
Transcriptional regulatory element prediction |
Transcription factors and regulatory sites |
Transcription factors and regulatory sites |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/transtermhp |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/transtermhp |
transtermhp |
TransTermHP |
TransTermHP finds rho-independent transcription terminators in bacterial genomes. Each terminator found by the program is assigned a confidence value that estimates its probability of being a true terminator |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
55 |
55 |
450 |
462 |
50 |
50 |
190 |
190 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
652 |
640 |
105 |
105 |
|
|
|
trimal |
trimal |
Tool for automated alignment trimming |
2024-10-02 |
https://trimal.readthedocs.io |
1.5.0 |
trimal |
1.5.0 |
Up-to-date |
Sequence Analysis, Phylogenetics |
Multiple sequence alignment |
Multiple sequence alignment |
Sequence analysis, Sequencing, Sequence sites, features and motifs |
Sequence analysis, Sequencing, Sequence sites, features and motifs |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimal |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/trimal |
trimal |
trimAl |
Tool for the automated removal of spurious sequences or poorly aligned regions from a multiple sequence alignment. |
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
19 |
19 |
118 |
118 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
105 |
105 |
954 |
954 |
1072 |
1072 |
124 |
124 |
https://usegalaxy.fr/published/workflow?id=5ec6d378e60f7ccc, https://usegalaxy.fr/published/workflow?id=63b49f322ec366b5, https://usegalaxy.fr/published/workflow?id=7ebb54181b404733, https://usegalaxy.fr/published/workflow?id=894143d81af8dff0, https://usegalaxy.fr/published/workflow?id=b131218bec7eacb4, https://usegalaxy.fr/published/workflow?id=d425a77157cae2ee, https://usegalaxy.fr/published/workflow?id=e134e9637adfc5b6, https://workflowhub.eu/workflows/1650?version=1 |
sequence-analysis/tapscan-streptophyte-algae |
|
trimmomatic |
trimmomatic |
A flexible read trimming tool for Illumina NGS data |
2024-01-03 |
http://www.usadellab.org/cms/?page=trimmomatic |
0.39 |
trimmomatic |
0.39 |
Up-to-date |
Fastq Manipulation |
|
|
|
|
pjbriggs |
https://github.com/galaxyproject/tools-iuc/tree/main/packages/trimmomatic |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/trimmomatic |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
1 |
1 |
1 |
1 |
1 |
0 |
16314 |
17716 |
389275 |
430050 |
42001 |
54708 |
676874 |
917994 |
5609 |
6547 |
134272 |
152180 |
885 |
886 |
29169 |
29186 |
1529410 |
1229590 |
79857 |
64809 |
https://dev.workflowhub.eu/workflows/1008?version=1, https://dev.workflowhub.eu/workflows/1081?version=1, https://dev.workflowhub.eu/workflows/1118?version=1, https://dev.workflowhub.eu/workflows/1175?version=2, https://dev.workflowhub.eu/workflows/1276?version=2, https://dev.workflowhub.eu/workflows/1305?version=2, https://dev.workflowhub.eu/workflows/1306?version=2, https://dev.workflowhub.eu/workflows/1319?version=2, https://usegalaxy.eu/published/workflow?id=0229f3f3835c2d53, https://usegalaxy.eu/published/workflow?id=0609a4b1941d1a68, https://usegalaxy.eu/published/workflow?id=0d6bed63a2e4c3d6, https://usegalaxy.eu/published/workflow?id=0de150b19102cb7e, https://usegalaxy.eu/published/workflow?id=152223c8aed27357, https://usegalaxy.eu/published/workflow?id=165089132248a0b0, https://usegalaxy.eu/published/workflow?id=1ef76b7b86e15792, https://usegalaxy.eu/published/workflow?id=20ada53472782c9b, https://usegalaxy.eu/published/workflow?id=220961d803697f54, https://usegalaxy.eu/published/workflow?id=22454322d370b3ff, https://usegalaxy.eu/published/workflow?id=2287afbf248d9c89, https://usegalaxy.eu/published/workflow?id=26185e8fa5a9b988, https://usegalaxy.eu/published/workflow?id=2a13eb981d6ee36e, https://usegalaxy.eu/published/workflow?id=2c3d05023c02113e, https://usegalaxy.eu/published/workflow?id=2e0075791f7fa384, https://usegalaxy.eu/published/workflow?id=3a8fde248a4d0383, https://usegalaxy.eu/published/workflow?id=3b7c0b64033f38ac, https://usegalaxy.eu/published/workflow?id=3ff4dbcc7a602e6b, https://usegalaxy.eu/published/workflow?id=40a621934a07c7ee, https://usegalaxy.eu/published/workflow?id=42c0da2e86318b37, https://usegalaxy.eu/published/workflow?id=4e215c9b50650d5d, https://usegalaxy.eu/published/workflow?id=4f245ac304ab76d9, https://usegalaxy.eu/published/workflow?id=4f62794453f65cba, https://usegalaxy.eu/published/workflow?id=533819bcb5aa78c5, https://usegalaxy.eu/published/workflow?id=5436eb1c430a38dd, https://usegalaxy.eu/published/workflow?id=54a4f76a5d736011, https://usegalaxy.eu/published/workflow?id=58955868b504c60d, https://usegalaxy.eu/published/workflow?id=591ebf913450f49e, https://usegalaxy.eu/published/workflow?id=5ed38d8114bcd6f7, https://usegalaxy.eu/published/workflow?id=63964ba7d9edce74, https://usegalaxy.eu/published/workflow?id=65249196143d7930, https://usegalaxy.eu/published/workflow?id=65aed668233d5f73, https://usegalaxy.eu/published/workflow?id=68e8042f11d5a3fd, https://usegalaxy.eu/published/workflow?id=6bce1d419a179c50, https://usegalaxy.eu/published/workflow?id=6d87481be47902e1, https://usegalaxy.eu/published/workflow?id=6ed1016dfdf9f928, https://usegalaxy.eu/published/workflow?id=7117dbcbd5d12de5, https://usegalaxy.eu/published/workflow?id=75e88603745e069e, https://usegalaxy.eu/published/workflow?id=76e9cd837ea5e7da, https://usegalaxy.eu/published/workflow?id=7aa32aba3fde0708, https://usegalaxy.eu/published/workflow?id=82ef590b5821805d, https://usegalaxy.eu/published/workflow?id=83049910e2cd5128, https://usegalaxy.eu/published/workflow?id=865f470be3c18b08, https://usegalaxy.eu/published/workflow?id=87231a6a7938cb95, https://usegalaxy.eu/published/workflow?id=872f5bc9fdbbc619, https://usegalaxy.eu/published/workflow?id=8ab6a554cdea5195, https://usegalaxy.eu/published/workflow?id=8f415b0c409f56f7, https://usegalaxy.eu/published/workflow?id=90f993a1b245eb68, https://usegalaxy.eu/published/workflow?id=99799eec4497f977, https://usegalaxy.eu/published/workflow?id=9e01e24c5e749365, https://usegalaxy.eu/published/workflow?id=9fddc44294236e8f, https://usegalaxy.eu/published/workflow?id=a08279c2a305afff, https://usegalaxy.eu/published/workflow?id=a62f21701ff37788, https://usegalaxy.eu/published/workflow?id=a847773b563b2328, https://usegalaxy.eu/published/workflow?id=af30010868c97316, https://usegalaxy.eu/published/workflow?id=b1d1694b95ed10e1, https://usegalaxy.eu/published/workflow?id=b26fee38f6f796d8, https://usegalaxy.eu/published/workflow?id=b2b46e71046b1999, https://usegalaxy.eu/published/workflow?id=b4de76c0a4d0e23a, https://usegalaxy.eu/published/workflow?id=b6eb5fe7e37f680a, https://usegalaxy.eu/published/workflow?id=b86f3775aa1f13bc, https://usegalaxy.eu/published/workflow?id=bb604ff5e010e7ab, https://usegalaxy.eu/published/workflow?id=bebcbd6f0ffa55c5, https://usegalaxy.eu/published/workflow?id=c992e77a6e8edcbd, https://usegalaxy.eu/published/workflow?id=cd3398e29f375d97, https://usegalaxy.eu/published/workflow?id=d6ff6be33b8bfe85, https://usegalaxy.eu/published/workflow?id=da19c0eaa757fa39, https://usegalaxy.eu/published/workflow?id=db10c092fad70d69, https://usegalaxy.eu/published/workflow?id=ddd604341afd9cf7, https://usegalaxy.eu/published/workflow?id=e94e307375a92c94, https://usegalaxy.eu/published/workflow?id=ea0524e0b5eab8b9, https://usegalaxy.eu/published/workflow?id=ee0005a5487653ba, https://usegalaxy.eu/published/workflow?id=f026c4b8341ff94c, https://usegalaxy.eu/published/workflow?id=f560e06d23818b4c, https://usegalaxy.eu/published/workflow?id=fa670d951fc4f778, https://usegalaxy.eu/published/workflow?id=fba10ba449498bb5, https://usegalaxy.eu/published/workflow?id=fe43cf59e48bf556, https://usegalaxy.eu/published/workflow?id=ff2fd4a4bb27d859, https://usegalaxy.org.au/published/workflow?id=0427bd5f28789a1f, https://usegalaxy.org.au/published/workflow?id=05950987aa2eba5b, https://usegalaxy.org.au/published/workflow?id=0c567180448d8774, https://usegalaxy.org.au/published/workflow?id=0f48060aa1bd41a5, https://usegalaxy.org.au/published/workflow?id=115896e8f4059e44, https://usegalaxy.org.au/published/workflow?id=14184bc2580a131f, https://usegalaxy.org.au/published/workflow?id=14e80b7f9f68ec2a, https://usegalaxy.org.au/published/workflow?id=1624a678c6791ca6, https://usegalaxy.org.au/published/workflow?id=25f65a29ce3c3ee0, https://usegalaxy.org.au/published/workflow?id=2a97585556d53a43, https://usegalaxy.org.au/published/workflow?id=2b0a986519532412, https://usegalaxy.org.au/published/workflow?id=38f57cffaeb0e39f, https://usegalaxy.org.au/published/workflow?id=39bb22274ede7500, https://usegalaxy.org.au/published/workflow?id=39c724282ee008e3, https://usegalaxy.org.au/published/workflow?id=3d5deed70ac9bde4, https://usegalaxy.org.au/published/workflow?id=46f352c70356184a, https://usegalaxy.org.au/published/workflow?id=50fdbdb8f807c021, https://usegalaxy.org.au/published/workflow?id=52065a4100b11184, https://usegalaxy.org.au/published/workflow?id=52d2fb868defa474, https://usegalaxy.org.au/published/workflow?id=53010c2f1f207429, https://usegalaxy.org.au/published/workflow?id=533dbb3242ee4255, https://usegalaxy.org.au/published/workflow?id=55c4d97a08a5ca09, https://usegalaxy.org.au/published/workflow?id=5693811cd933d2a2, https://usegalaxy.org.au/published/workflow?id=60c5675ed2f4a7d8, https://usegalaxy.org.au/published/workflow?id=677ef3322366c953, https://usegalaxy.org.au/published/workflow?id=73854e391eec51d0, https://usegalaxy.org.au/published/workflow?id=79f4bdf9aab7c256, https://usegalaxy.org.au/published/workflow?id=80a1493fb9593bb3, https://usegalaxy.org.au/published/workflow?id=811bbada546850bd, https://usegalaxy.org.au/published/workflow?id=84589f66ec87ad99, https://usegalaxy.org.au/published/workflow?id=869440d35a618836, https://usegalaxy.org.au/published/workflow?id=8b5897305dcaf076, https://usegalaxy.org.au/published/workflow?id=8d47811c6154d347, https://usegalaxy.org.au/published/workflow?id=8f7d5ebead46a6d0, https://usegalaxy.org.au/published/workflow?id=914330feb75ea9ab, https://usegalaxy.org.au/published/workflow?id=954318db8c8d9219, https://usegalaxy.org.au/published/workflow?id=9cf3860659285656, https://usegalaxy.org.au/published/workflow?id=a1c59e9f5c7327d2, https://usegalaxy.org.au/published/workflow?id=a35e5a238a70176a, https://usegalaxy.org.au/published/workflow?id=a61d4bda54de7cd1, https://usegalaxy.org.au/published/workflow?id=baa763dbdf6afb71, https://usegalaxy.org.au/published/workflow?id=cc6de673126c56cb, https://usegalaxy.org.au/published/workflow?id=cef4a514f35576e5, https://usegalaxy.org.au/published/workflow?id=d0933b5040adf902, https://usegalaxy.org.au/published/workflow?id=d35d05be576e8b13, https://usegalaxy.org.au/published/workflow?id=d42df3bb51a94a52, https://usegalaxy.org.au/published/workflow?id=d68e167c3423c795, https://usegalaxy.org.au/published/workflow?id=e045a6064ad5fdc4, https://usegalaxy.org.au/published/workflow?id=e4ddf33ee5b5e259, https://usegalaxy.org.au/published/workflow?id=e8d3651c07ce0bec, https://usegalaxy.org.au/published/workflow?id=eaa841e6b7384633, https://usegalaxy.org.au/published/workflow?id=ec202ccfb5f03d0d, https://usegalaxy.org.au/published/workflow?id=f19d63d7c9a48160, https://usegalaxy.org.au/published/workflow?id=f547724fb0b2806a, https://usegalaxy.org.au/published/workflow?id=fa76b66785ce38b8, https://usegalaxy.org/published/workflow?id=01585f1230125ba1, https://usegalaxy.org/published/workflow?id=02755c14619242da, https://usegalaxy.org/published/workflow?id=02c96a9c6bb708ac, https://usegalaxy.org/published/workflow?id=037c3a9d872be3de, https://usegalaxy.org/published/workflow?id=03a1cd225af6de69, https://usegalaxy.org/published/workflow?id=049e6609da2b67c4, https://usegalaxy.org/published/workflow?id=05bf642dc7c58c40, https://usegalaxy.org/published/workflow?id=0660a00407fc16a1, https://usegalaxy.org/published/workflow?id=06d6dcd2655592af, https://usegalaxy.org/published/workflow?id=07739fbbd53755f6, https://usegalaxy.org/published/workflow?id=0843c6f15eae2f15, https://usegalaxy.org/published/workflow?id=098375608a1223aa, https://usegalaxy.org/published/workflow?id=0c6dbb2ef5eee5b9, https://usegalaxy.org/published/workflow?id=0cbab8b7044d24f9, https://usegalaxy.org/published/workflow?id=0d8ec47a84766f96, https://usegalaxy.org/published/workflow?id=10d8d47f97afc999, https://usegalaxy.org/published/workflow?id=13460c791ca97689, https://usegalaxy.org/published/workflow?id=15cca0e249f40aea, https://usegalaxy.org/published/workflow?id=17a7ff756d37a437, https://usegalaxy.org/published/workflow?id=17beb47e45a7690c, https://usegalaxy.org/published/workflow?id=1deaf458d6d8695a, https://usegalaxy.org/published/workflow?id=1f4dc0488f0554c6, https://usegalaxy.org/published/workflow?id=1fdd58f4b7a6f643, https://usegalaxy.org/published/workflow?id=20023b26bb60f4df, https://usegalaxy.org/published/workflow?id=20b7ae4b517a80fd, https://usegalaxy.org/published/workflow?id=21a047a4e068860f, https://usegalaxy.org/published/workflow?id=21b416bcf0b8c8cf, https://usegalaxy.org/published/workflow?id=2219c4aa7eb8cfb8, https://usegalaxy.org/published/workflow?id=22f6b939e97d3b47, https://usegalaxy.org/published/workflow?id=2375a915a5b33b39, https://usegalaxy.org/published/workflow?id=23c4e801213eee50, https://usegalaxy.org/published/workflow?id=2497103d279cd20e, https://usegalaxy.org/published/workflow?id=2524e026f069e885, https://usegalaxy.org/published/workflow?id=2566f7c6bef19b18, https://usegalaxy.org/published/workflow?id=262ab42118016c41, https://usegalaxy.org/published/workflow?id=2644a8c0da3066c5, https://usegalaxy.org/published/workflow?id=26c4909f2f3df704, https://usegalaxy.org/published/workflow?id=27144c7e44d3f56b, https://usegalaxy.org/published/workflow?id=271b97e5c00c4da4, https://usegalaxy.org/published/workflow?id=27327a985fa9147f, https://usegalaxy.org/published/workflow?id=28abac549697f65a, https://usegalaxy.org/published/workflow?id=2a7fbfc1c17e38bc, https://usegalaxy.org/published/workflow?id=2af3de32c630e1b4, https://usegalaxy.org/published/workflow?id=2bf89464c21ec7cd, https://usegalaxy.org/published/workflow?id=2ceff2cf26eae4cd, https://usegalaxy.org/published/workflow?id=2d30be556aab1f52, https://usegalaxy.org/published/workflow?id=2db2d27f0c627f44, https://usegalaxy.org/published/workflow?id=2dd4f04c7de7d173, https://usegalaxy.org/published/workflow?id=2e65bc5f9d9f2a75, https://usegalaxy.org/published/workflow?id=30883502ec515fe2, https://usegalaxy.org/published/workflow?id=31acbfc6d3775846, https://usegalaxy.org/published/workflow?id=33d90e718ce500ef, https://usegalaxy.org/published/workflow?id=35209d092e636cd8, https://usegalaxy.org/published/workflow?id=36bd1c3d32150b90, https://usegalaxy.org/published/workflow?id=385ac7ec85e37e3e, https://usegalaxy.org/published/workflow?id=39753cc73284963f, https://usegalaxy.org/published/workflow?id=39e79458c9ba581c, https://usegalaxy.org/published/workflow?id=3a51f1f54b2ef024, https://usegalaxy.org/published/workflow?id=3bed12ef73ba93bf, https://usegalaxy.org/published/workflow?id=3d5347f1e8ee7db2, https://usegalaxy.org/published/workflow?id=3dc57709c4387ba7, https://usegalaxy.org/published/workflow?id=3e2bbafb8c6580af, https://usegalaxy.org/published/workflow?id=3f2d1003ff959c7c, https://usegalaxy.org/published/workflow?id=4054ceeba1a2fa69, https://usegalaxy.org/published/workflow?id=4061e061f659449b, https://usegalaxy.org/published/workflow?id=413d7e5aa7378cf1, https://usegalaxy.org/published/workflow?id=415c7152cb78e86f, https://usegalaxy.org/published/workflow?id=41bbf3cd893d400a, https://usegalaxy.org/published/workflow?id=43861b38cf6e927e, https://usegalaxy.org/published/workflow?id=446a9297e64ecb72, https://usegalaxy.org/published/workflow?id=449a419bcfd3c49e, https://usegalaxy.org/published/workflow?id=46e4acdc08eb3ea5, https://usegalaxy.org/published/workflow?id=46f184a0e95f3c1c, https://usegalaxy.org/published/workflow?id=4a50ce0e9f4d4bb8, https://usegalaxy.org/published/workflow?id=4a95226c24ccbf3c, https://usegalaxy.org/published/workflow?id=4d0607d3589e0775, https://usegalaxy.org/published/workflow?id=4d251ecda59c87c5, https://usegalaxy.org/published/workflow?id=4dbac8374419d29e, https://usegalaxy.org/published/workflow?id=4e3efbdd0c4c3e64, https://usegalaxy.org/published/workflow?id=4e6005819e57ed35, https://usegalaxy.org/published/workflow?id=4ed9f54caa932479, https://usegalaxy.org/published/workflow?id=4f459cfef6108e75, https://usegalaxy.org/published/workflow?id=50206b10de958d03, https://usegalaxy.org/published/workflow?id=50fb074833eb9836, https://usegalaxy.org/published/workflow?id=51754f5039d2f244, https://usegalaxy.org/published/workflow?id=544ce8ff6c9f6d4c, https://usegalaxy.org/published/workflow?id=5497e8630ebfeb42, https://usegalaxy.org/published/workflow?id=55c09bcdf3d7ae16, https://usegalaxy.org/published/workflow?id=57726b39bbfb0c54, https://usegalaxy.org/published/workflow?id=57cfc1b5d9ea0d72, https://usegalaxy.org/published/workflow?id=57fdd0bae83f2c97, https://usegalaxy.org/published/workflow?id=58ce6470337a190d, https://usegalaxy.org/published/workflow?id=5951d11d3122abed, https://usegalaxy.org/published/workflow?id=5cad854edbbd3b69, https://usegalaxy.org/published/workflow?id=5ce5b3061c6afd82, https://usegalaxy.org/published/workflow?id=5df593510c7d944d, https://usegalaxy.org/published/workflow?id=5eb2e090df59d9a9, https://usegalaxy.org/published/workflow?id=5f878c4cc3bff68c, https://usegalaxy.org/published/workflow?id=5fa548beeb1411f2, https://usegalaxy.org/published/workflow?id=5ffeb9904cf5f0bf, https://usegalaxy.org/published/workflow?id=60e999ef3dcff4ca, https://usegalaxy.org/published/workflow?id=61d03396ad7f25b9, https://usegalaxy.org/published/workflow?id=63d590e8567f7157, https://usegalaxy.org/published/workflow?id=658f6e4985b6e4a7, https://usegalaxy.org/published/workflow?id=67e3457099db3ed2, https://usegalaxy.org/published/workflow?id=6822f413a3b09cb4, https://usegalaxy.org/published/workflow?id=688a55b9ec2f5bf7, https://usegalaxy.org/published/workflow?id=692a2b0bb818336d, https://usegalaxy.org/published/workflow?id=69363bab20c5ca6c, https://usegalaxy.org/published/workflow?id=695152887ca01bf0, https://usegalaxy.org/published/workflow?id=695d20ef3ee4cf1e, https://usegalaxy.org/published/workflow?id=6a08af55c086ec62, https://usegalaxy.org/published/workflow?id=6c49d9c25ba4ddf5, https://usegalaxy.org/published/workflow?id=6d8f0be547b12528, https://usegalaxy.org/published/workflow?id=6dd383fd86fea674, https://usegalaxy.org/published/workflow?id=6e6651ae846d8f83, https://usegalaxy.org/published/workflow?id=7114515b82c5f62a, https://usegalaxy.org/published/workflow?id=71f129d96b81851e, https://usegalaxy.org/published/workflow?id=71f8a4090877f171, https://usegalaxy.org/published/workflow?id=7203eb3b663bca11, https://usegalaxy.org/published/workflow?id=7251c6e0dad8f927, https://usegalaxy.org/published/workflow?id=75f14618020c922a, https://usegalaxy.org/published/workflow?id=7610b7797d71993a, https://usegalaxy.org/published/workflow?id=76247065c01f01d1, https://usegalaxy.org/published/workflow?id=7643e66a9b4e9c11, https://usegalaxy.org/published/workflow?id=775e67dc75f741b8, https://usegalaxy.org/published/workflow?id=779ea0b19d07a1bd, https://usegalaxy.org/published/workflow?id=78979ec454b98338, https://usegalaxy.org/published/workflow?id=78db135e2aa5789d, https://usegalaxy.org/published/workflow?id=794e7e952003d3d9, https://usegalaxy.org/published/workflow?id=7965d84a9f71da93, https://usegalaxy.org/published/workflow?id=7a203cf1678df56d, https://usegalaxy.org/published/workflow?id=7a2b4675c758f34e, https://usegalaxy.org/published/workflow?id=7b19452fe35b8b17, https://usegalaxy.org/published/workflow?id=7d110e1fca0ac973, https://usegalaxy.org/published/workflow?id=7decdde67868ed0f, https://usegalaxy.org/published/workflow?id=8041fad92ef6e904, https://usegalaxy.org/published/workflow?id=839cac17365affb7, https://usegalaxy.org/published/workflow?id=840a7be198dc8ae4, https://usegalaxy.org/published/workflow?id=8689dc9eac10c871, https://usegalaxy.org/published/workflow?id=86b802ea75d18160, https://usegalaxy.org/published/workflow?id=8700f593a3d642f5, https://usegalaxy.org/published/workflow?id=884ee0057bde9135, https://usegalaxy.org/published/workflow?id=89660361d4121fa8, https://usegalaxy.org/published/workflow?id=8b08a05c5926dd0f, https://usegalaxy.org/published/workflow?id=8b133c1d302c8681, https://usegalaxy.org/published/workflow?id=8c1516493c55bf7d, https://usegalaxy.org/published/workflow?id=8caea3788657235d, https://usegalaxy.org/published/workflow?id=8d229c0f58a07ebe, https://usegalaxy.org/published/workflow?id=8daa91d54040ba95, https://usegalaxy.org/published/workflow?id=8ed3444a692f8e61, https://usegalaxy.org/published/workflow?id=8fb8c80c93ad694e, https://usegalaxy.org/published/workflow?id=906cc2c2d4e24483, https://usegalaxy.org/published/workflow?id=916a116b69ac5eeb, https://usegalaxy.org/published/workflow?id=930b554aa4b76ee1, https://usegalaxy.org/published/workflow?id=947340358dd268ea, https://usegalaxy.org/published/workflow?id=958f78270fc8f55c, https://usegalaxy.org/published/workflow?id=97064f2af2f30dc4, https://usegalaxy.org/published/workflow?id=99bc7ba3faa7ed55, https://usegalaxy.org/published/workflow?id=9bace540b35b1e61, https://usegalaxy.org/published/workflow?id=9c022f4028de0bc6, https://usegalaxy.org/published/workflow?id=9d626a89800a96ca, https://usegalaxy.org/published/workflow?id=9f5f2e309a3ea50c, https://usegalaxy.org/published/workflow?id=a37961bf3d435918, https://usegalaxy.org/published/workflow?id=a3f7a57dbf8f0741, https://usegalaxy.org/published/workflow?id=a4f7af1e2cd826c3, https://usegalaxy.org/published/workflow?id=a67afbea4b2eb26b, https://usegalaxy.org/published/workflow?id=a71fcbc60caae8b6, https://usegalaxy.org/published/workflow?id=a89e1018a00b883c, https://usegalaxy.org/published/workflow?id=a89eaad3f42ec41c, https://usegalaxy.org/published/workflow?id=a8ddab36010ed4c3, https://usegalaxy.org/published/workflow?id=a98a3ac1a41752bc, https://usegalaxy.org/published/workflow?id=ab6e4277fc825c5d, https://usegalaxy.org/published/workflow?id=ab8590a0ee1b9951, https://usegalaxy.org/published/workflow?id=adf531bc12766c9b, https://usegalaxy.org/published/workflow?id=ae81cc0e8263d03e, https://usegalaxy.org/published/workflow?id=ae83fb92e697e009, https://usegalaxy.org/published/workflow?id=af5acb5dd7bfac56, https://usegalaxy.org/published/workflow?id=afb67b4b9952f57d, https://usegalaxy.org/published/workflow?id=b0e19e7315b64c87, https://usegalaxy.org/published/workflow?id=b1004c9974ceb785, https://usegalaxy.org/published/workflow?id=b16a1642e2cd54a2, https://usegalaxy.org/published/workflow?id=b18a41e364650fee, https://usegalaxy.org/published/workflow?id=b33ad2032a655706, https://usegalaxy.org/published/workflow?id=b43b72dcf5f7694d, https://usegalaxy.org/published/workflow?id=b461ac6f18e0c9cf, https://usegalaxy.org/published/workflow?id=b4d57f2aa0678ad2, https://usegalaxy.org/published/workflow?id=b50f2446d5e60334, https://usegalaxy.org/published/workflow?id=b55a27a75c63de66, https://usegalaxy.org/published/workflow?id=b561d3d9645a2726, https://usegalaxy.org/published/workflow?id=b68ec42db8953569, https://usegalaxy.org/published/workflow?id=b6d90898e2db6aba, https://usegalaxy.org/published/workflow?id=b77fa73d4fbde131, https://usegalaxy.org/published/workflow?id=b8804291f2754fc8, https://usegalaxy.org/published/workflow?id=b9e6ddbc79904844, https://usegalaxy.org/published/workflow?id=ba405b449e27ba37, https://usegalaxy.org/published/workflow?id=ba5ea0a943d4359d, https://usegalaxy.org/published/workflow?id=ba68fd4b4348e63c, https://usegalaxy.org/published/workflow?id=bb16936081b820f6, https://usegalaxy.org/published/workflow?id=bbe958a8c0bf4955, https://usegalaxy.org/published/workflow?id=bd00c8a7a3b7e5be, https://usegalaxy.org/published/workflow?id=bd184804cfddafc4, https://usegalaxy.org/published/workflow?id=bf90f2bd20fbff21, https://usegalaxy.org/published/workflow?id=bfd3ba54576d2d81, https://usegalaxy.org/published/workflow?id=bfee1238c70627cb, https://usegalaxy.org/published/workflow?id=c11dfc3314e33b33, https://usegalaxy.org/published/workflow?id=c4aaf11b0cb6e5ac, https://usegalaxy.org/published/workflow?id=c4af6c5f5dfaae82, https://usegalaxy.org/published/workflow?id=c57c820557ae9b55, https://usegalaxy.org/published/workflow?id=c95fc8692a886a59, https://usegalaxy.org/published/workflow?id=c9e442a395fc1a58, https://usegalaxy.org/published/workflow?id=cd431e5f912d3616, https://usegalaxy.org/published/workflow?id=ce232859a466c75c, https://usegalaxy.org/published/workflow?id=ced446bf2428497b, https://usegalaxy.org/published/workflow?id=cf3f0760611f22f9, https://usegalaxy.org/published/workflow?id=cfd37af9d6e4cbdb, https://usegalaxy.org/published/workflow?id=d0981820adf9c7d2, https://usegalaxy.org/published/workflow?id=d196c3bde666eccb, https://usegalaxy.org/published/workflow?id=d2edc47cc7963885, https://usegalaxy.org/published/workflow?id=d2f7fd589a91124a, https://usegalaxy.org/published/workflow?id=d314df52f2f51502, https://usegalaxy.org/published/workflow?id=d3eae9943ce2a62b, https://usegalaxy.org/published/workflow?id=d50b2df115706adb, https://usegalaxy.org/published/workflow?id=d7049965ca7d8ea9, https://usegalaxy.org/published/workflow?id=d761637d43ee0324, https://usegalaxy.org/published/workflow?id=d7d65ee5c5ca951f, https://usegalaxy.org/published/workflow?id=d7e14ff032a6ac4f, https://usegalaxy.org/published/workflow?id=d85f8ef78040fbb1, https://usegalaxy.org/published/workflow?id=d97a88a8f9061e25, https://usegalaxy.org/published/workflow?id=db0671862a57968d, https://usegalaxy.org/published/workflow?id=db08887d7d6dc147, https://usegalaxy.org/published/workflow?id=dbcf0fbf5329b3fb, https://usegalaxy.org/published/workflow?id=dbdc894ad54675a8, https://usegalaxy.org/published/workflow?id=de2861cdbd4e29ce, https://usegalaxy.org/published/workflow?id=df6b9760e071b91b, https://usegalaxy.org/published/workflow?id=df6c398b2d4f1e99, https://usegalaxy.org/published/workflow?id=e0c33057ac2670ba, https://usegalaxy.org/published/workflow?id=e22ea88bc0fdc146, https://usegalaxy.org/published/workflow?id=e2c77aeabb8053b4, https://usegalaxy.org/published/workflow?id=e2d7b8a4e6c422a3, https://usegalaxy.org/published/workflow?id=e4e5dec116e7240b, https://usegalaxy.org/published/workflow?id=e57d595b0cde1614, https://usegalaxy.org/published/workflow?id=e5a01f746bc9e9b5, https://usegalaxy.org/published/workflow?id=e67db5dc8eab60f3, https://usegalaxy.org/published/workflow?id=e6a6223ef5ef85a7, https://usegalaxy.org/published/workflow?id=e6b48a02789d1879, https://usegalaxy.org/published/workflow?id=e6b803c1232cd08e, https://usegalaxy.org/published/workflow?id=e6f57346a02be07f, https://usegalaxy.org/published/workflow?id=e75bd7d392e65209, https://usegalaxy.org/published/workflow?id=e7bfa3c733835b22, https://usegalaxy.org/published/workflow?id=eb01b539d17580c3, https://usegalaxy.org/published/workflow?id=eb4b32fcf4a9f64a, https://usegalaxy.org/published/workflow?id=ebbcdc389aad0eb8, https://usegalaxy.org/published/workflow?id=ebc9aad36017b567, https://usegalaxy.org/published/workflow?id=ec3d8d5d1531f92e, https://usegalaxy.org/published/workflow?id=ec96e3bf30d5f771, https://usegalaxy.org/published/workflow?id=edb299ecbf147618, https://usegalaxy.org/published/workflow?id=ef44d02a79bd28bf, https://usegalaxy.org/published/workflow?id=efb10012b8448b21, https://usegalaxy.org/published/workflow?id=f0feca8af9aeddba, https://usegalaxy.org/published/workflow?id=f1a9667c0b0999f4, https://usegalaxy.org/published/workflow?id=f23e5f333987a89f, https://usegalaxy.org/published/workflow?id=f302d673420a9bdd, https://usegalaxy.org/published/workflow?id=f3aba99a8204081e, https://usegalaxy.org/published/workflow?id=f3ed710e251833a7, https://usegalaxy.org/published/workflow?id=f47f0b25c1405128, https://usegalaxy.org/published/workflow?id=f4ed1c9434ed0445, https://usegalaxy.org/published/workflow?id=f60818a405f1bbbd, https://usegalaxy.org/published/workflow?id=f63f7a0a33a83841, https://usegalaxy.org/published/workflow?id=f88f186bc851e954, https://usegalaxy.org/published/workflow?id=f961fc46d4fddecc, https://usegalaxy.org/published/workflow?id=f9d546aae406cf15, https://usegalaxy.org/published/workflow?id=fae519dcba6bfc72, https://usegalaxy.org/published/workflow?id=fb01e1a49793c8be, https://usegalaxy.org/published/workflow?id=fc09d17e0bce18f8, https://usegalaxy.org/published/workflow?id=fd30cdfe7e38b508, https://usegalaxy.org/published/workflow?id=fe2c0e4694c56b6b, https://usegalaxy.org/published/workflow?id=ff137b61d4ef1b86, https://workflowhub.eu/workflows/1271?version=3, https://workflowhub.eu/workflows/1272?version=2, https://workflowhub.eu/workflows/1573?version=1, https://workflowhub.eu/workflows/1606?version=1, https://workflowhub.eu/workflows/1651?version=1, https://workflowhub.eu/workflows/1653?version=1, https://workflowhub.eu/workflows/1678?version=1, https://workflowhub.eu/workflows/1685?version=1, https://workflowhub.eu/workflows/1716?version=1, https://workflowhub.eu/workflows/1767?version=1, https://workflowhub.eu/workflows/232?version=1, https://workflowhub.eu/workflows/233?version=1, https://workflowhub.eu/workflows/628?version=1, https://workflowhub.eu/workflows/676?version=1, https://workflowhub.eu/workflows/876?version=1 |
epigenetics/tal1-binding-site-identification, evolution/mtb_transmission, sequence-analysis/human-reads-removal, transcriptomics/de-novo, transcriptomics/full-de-novo, variant-analysis/exome-seq, variant-analysis/somatic-variant-discovery, variant-analysis/somatic-variants |
|
trimns |
trimns |
TrimNs is used to trim and remove fake cut sites from bionano hybrid scaffold data in the VGP pipeline |
2021-01-29 |
https://github.com/VGP/vgp-assembly/tree/master/pipeline/bionano/trimNs |
0.1.0 |
trimns_vgp |
1.0 |
To update |
Assembly |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/trimN |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/TrimNs |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
24 |
24 |
48 |
48 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
48 |
48 |
24 |
24 |
|
|
|
trinity |
trinity_abundance_estimates_to_matrix, trinity_align_and_estimate_abundance, trinity_analyze_diff_expr, trinity_contig_exn50_statistic, trinity_define_clusters_by_cutting_tree, describe_samples, trinity_filter_low_expr_transcripts, trinity_gene_to_trans_map, trinity_run_de_analysis, trinity_samples_qccheck, trinity_super_transcripts, trinity, trinity_stats |
Trinity represents a method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq datahttps://github.com/trinityrnaseq/trinityrnaseq |
2015-11-09 |
https://github.com/trinityrnaseq/trinityrnaseq |
2.15.1 |
trinity |
2.15.2 |
To update |
Transcriptomics, RNA |
Transcriptome assembly |
Transcriptome assembly |
Transcriptomics, Gene expression, Gene transcripts |
Transcriptomics, Gene transcripts |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/trinity |
trinity |
Trinity |
Trinity is a transcriptome assembler which relies on three different tools, inchworm an assembler, chrysalis which pools contigs and butterfly which amongst others compacts a graph resulting from butterfly with reads. |
|
9 |
13 |
13 |
13 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
11 |
0 |
1 |
0 |
0 |
11 |
13 |
12 |
0 |
1798 |
1971 |
38023 |
43670 |
3713 |
3713 |
49692 |
49692 |
792 |
853 |
20372 |
26526 |
151 |
151 |
2957 |
3039 |
122927 |
111044 |
6688 |
6454 |
https://dev.workflowhub.eu/workflows/1306?version=2, https://workflowhub.eu/workflows/1716?version=1 |
transcriptomics/full-de-novo |
|
trinotate |
trinotate |
Trinotate is a comprehensive annotation suite designed for automatic functional annotation of de novo transcriptomes. |
2016-11-15 |
https://trinotate.github.io/ |
3.2.2 |
trinotate |
4.0.2 |
To update |
Transcriptomics, RNA |
Gene functional annotation |
Gene functional annotation |
Gene expression, Transcriptomics |
Transcriptomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinotate |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/trinotate |
trinotate |
Trinotate |
Comprehensive annotation suite designed for automatic functional annotation of transcriptomes, particularly de novo assembled transcriptomes, from model or non-model organisms. |
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
397 |
423 |
2068 |
2239 |
556 |
556 |
2051 |
2051 |
170 |
209 |
938 |
1178 |
0 |
1 |
0 |
10 |
5478 |
5057 |
1189 |
1123 |
https://dev.workflowhub.eu/workflows/1306?version=2, https://workflowhub.eu/workflows/1716?version=1 |
transcriptomics/full-de-novo |
|
trycycler |
trycycler_cluster, trycycler_consensus, trycycler_partition, trycycler_reconcile_msa, trycycler_subsample |
Trycycler toolkit wrappers |
2021-02-11 |
https://github.com/rrwick/Trycycler |
0.5.5 |
trycycler |
0.5.5 |
Up-to-date |
Assembly |
Genome assembly, Sequence trimming, Scaffold gap completion, Sequence assembly validation |
Genome assembly, Sequence trimming, Scaffold gap completion, Sequence assembly validation |
Sequence assembly, DNA, Human biology, Whole genome sequencing, Genomics |
Sequence assembly, DNA, Human biology, Whole genome sequencing, Genomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/trycycler |
trycycler |
Trycycler |
Trycycler: consensus long-read assemblies for bacterial genomes |
|
0 |
5 |
5 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
0 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
0 |
0 |
105 |
105 |
14972 |
14972 |
0 |
0 |
0 |
0 |
48 |
48 |
5076 |
5076 |
3 |
3 |
27 |
27 |
20075 |
20075 |
156 |
156 |
|
|
|
tsebra |
tsebra |
This tool has been developed to combine BRAKER predictions. |
2023-10-19 |
https://github.com/Gaius-Augustus/TSEBRA |
1.1.2.5 |
tsebra |
1.1.2.5 |
Up-to-date |
Genome annotation |
Homology-based gene prediction, Alternative splicing prediction |
Homology-based gene prediction, Alternative splicing prediction |
Gene expression, RNA-Seq, Gene transcripts, Model organisms |
Gene expression, RNA-Seq, Gene transcripts, Model organisms |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/tsebra |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/tsebra |
tsebra |
TSEBRA |
TSEBRA is a combiner tool that selects transcripts from gene predictions based on the support by extrisic evidence in form of introns and start/stop codons. It was developed to combine BRAKER1 and BRAKER2 predicitons to increase their accuracies. |
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
13 |
43 |
43 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
43 |
43 |
13 |
13 |
|
|
|
tsne |
tsne |
T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation |
2017-05-26 |
https://cran.r-project.org/web/packages/Rtsne/ |
0.0.2 |
r-rtsne |
0.13 |
To update |
Text Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/tsne |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/tsne |
|
|
|
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
29 |
38 |
222 |
381 |
65 |
65 |
299 |
299 |
0 |
0 |
0 |
0 |
2 |
2 |
4 |
4 |
684 |
525 |
105 |
96 |
|
|
|
tximport |
tximport |
Wrapper for the Bioconductor package tximport |
2019-10-15 |
http://bioconductor.org/packages/tximport/ |
1.30.0 |
bioconductor-tximport |
1.34.0 |
To update |
Transcriptomics |
Pathway or network analysis, Formatting, RNA-Seq analysis |
Pathway or network analysis, Formatting, RNA-Seq analysis |
Transcriptomics, Gene transcripts, Workflows |
Transcriptomics, Gene transcripts, Workflows |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/tximport |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/tximport |
tximport |
tximport |
An R/Bioconductor package that imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream gene-level analysis packages. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
247 |
249 |
2040 |
2061 |
954 |
954 |
7413 |
7413 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
9474 |
9453 |
1203 |
1201 |
https://usegalaxy.eu/published/workflow?id=65aed668233d5f73 |
|
|
ucsc_axtchain |
ucsc_axtchain |
Chain together genome alignments |
2024-08-26 |
http://hgdownload.cse.ucsc.edu/admin/exe/ |
482 |
ucsc-axtchain |
482 |
Up-to-date |
Sequence Analysis |
|
|
Sequence analysis |
Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/axtchain |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_axtchain |
UCSC_Genome_Browser_Utilities |
UCSC Genome Browser Utilities |
Utilities for handling sequences and assemblies from the UCSC Genome Browser project. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
11 |
11 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
11 |
1 |
1 |
|
|
|
ucsc_axttomaf |
ucsc_axtomaf |
Convert dataset from axt to MAF format. |
2024-08-27 |
http://hgdownload.cse.ucsc.edu/admin/exe/ |
482 |
ucsc-axttomaf |
482 |
Up-to-date |
Convert Formats |
|
|
Sequence analysis |
Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/axttomaf |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_axttomaf |
UCSC_Genome_Browser_Utilities |
UCSC Genome Browser Utilities |
Utilities for handling sequences and assemblies from the UCSC Genome Browser project. |
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
12 |
12 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
12 |
1 |
1 |
|
|
|
ucsc_blat |
ucsc_blat |
Standalone blat sequence search command line tool |
2017-05-17 |
http://genome.ucsc.edu/goldenPath/help/blatSpec.html |
482 |
ucsc-blat |
482 |
Up-to-date |
Sequence Analysis |
Sequence alignment |
Sequence alignment |
Sequence analysis |
Sequence analysis |
yating-l |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc_blat/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_blat |
blat |
BLAT |
Fast, accurate spliced alignment of DNA sequences. |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
ucsc_chainantirepeat |
ucsc_chainantirepeat |
Remove repeated chains |
2025-03-07 |
http://hgdownload.cse.ucsc.edu/admin/exe/ |
482 |
ucsc-chainantirepeat |
482 |
Up-to-date |
Sequence Analysis |
|
|
Sequence analysis |
Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_chainantirepeat |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_chainantirepeat |
UCSC_Genome_Browser_Utilities |
UCSC Genome Browser Utilities |
Utilities for handling sequences and assemblies from the UCSC Genome Browser project. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
ucsc_chainnet |
ucsc_chainnet |
Make alignment nets out of chains |
2024-08-30 |
http://hgdownload.cse.ucsc.edu/admin/exe/ |
482 |
ucsc-chainnet |
482 |
Up-to-date |
Sequence Analysis |
|
|
Sequence analysis |
Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_chainnet |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_chainnet |
UCSC_Genome_Browser_Utilities |
UCSC Genome Browser Utilities |
Utilities for handling sequences and assemblies from the UCSC Genome Browser project. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
14 |
14 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
14 |
14 |
1 |
1 |
|
|
|
ucsc_chainprenet |
ucsc_chainprenet |
Remove chains that don't have a chance of being netted |
2024-08-27 |
http://hgdownload.cse.ucsc.edu/admin/exe/ |
482 |
ucsc-chainprenet |
482 |
Up-to-date |
Sequence Analysis |
|
|
Sequence analysis |
Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/chainprenet |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_chainprenet |
UCSC_Genome_Browser_Utilities |
UCSC Genome Browser Utilities |
Utilities for handling sequences and assemblies from the UCSC Genome Browser project. |
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
13 |
13 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
13 |
1 |
1 |
|
|
|
ucsc_chainsort |
ucsc_chainsort |
Sort chains. By default sorts by score. |
2024-08-26 |
http://hgdownload.cse.ucsc.edu/admin/exe/ |
482 |
ucsc-chainsort |
482 |
Up-to-date |
Sequence Analysis |
|
|
Sequence analysis |
Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/chainsort |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_chainsort |
UCSC_Genome_Browser_Utilities |
UCSC Genome Browser Utilities |
Utilities for handling sequences and assemblies from the UCSC Genome Browser project. |
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
13 |
13 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
13 |
1 |
1 |
|
|
|
ucsc_fasplit |
fasplit |
faSplit is a tool to split a single FASTA file into several files |
2017-09-08 |
http://hgdownload.cse.ucsc.edu/admin/exe/ |
482 |
ucsc-fasplit |
482 |
Up-to-date |
Fasta Manipulation |
|
|
Sequence analysis |
Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/fasplit |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/fasplit |
UCSC_Genome_Browser_Utilities |
UCSC Genome Browser Utilities |
Utilities for handling sequences and assemblies from the UCSC Genome Browser project. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
503 |
529 |
3473 |
3613 |
666 |
668 |
7004 |
7037 |
197 |
197 |
1305 |
1305 |
5 |
5 |
9 |
9 |
11964 |
11791 |
1399 |
1371 |
https://usegalaxy.eu/published/workflow?id=02631612a43a4d9b, https://usegalaxy.eu/published/workflow?id=3eaa913306c16146, https://usegalaxy.eu/published/workflow?id=4d32b1b3ac0a7161, https://usegalaxy.eu/published/workflow?id=6158c3b5fc12044e, https://usegalaxy.eu/published/workflow?id=6416cfdbd5273063, https://usegalaxy.eu/published/workflow?id=667bac8d7453e5f1, https://usegalaxy.eu/published/workflow?id=8deb08d4f228e198, https://usegalaxy.eu/published/workflow?id=d57d41e306241396, https://usegalaxy.eu/published/workflow?id=e423c80058601e78, https://usegalaxy.org.au/published/workflow?id=8ae08ac9e73c8241 |
|
|
ucsc_fatovcf |
fatovcf |
Convert a FASTA alignment file to Variant Call Format (VCF) single-nucleotide diffs |
2023-01-11 |
http://hgdownload.cse.ucsc.edu/admin/exe/ |
482 |
ucsc-fatovcf |
482 |
Up-to-date |
Convert Formats |
|
|
Sequence analysis |
Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/fatovcf |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/fatovcf |
UCSC_Genome_Browser_Utilities |
UCSC Genome Browser Utilities |
Utilities for handling sequences and assemblies from the UCSC Genome Browser project. |
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
62 |
62 |
473 |
473 |
150 |
150 |
770 |
770 |
6 |
6 |
108 |
108 |
0 |
0 |
0 |
0 |
1351 |
1351 |
218 |
218 |
|
variant-analysis/pox-tiled-amplicon |
|
ucsc_maftoaxt |
maftoaxt |
Convert dataset from MAF to axt format |
2024-07-30 |
http://hgdownload.cse.ucsc.edu/admin/exe/ |
482 |
ucsc-maftoaxt |
482 |
Up-to-date |
Convert Formats |
|
|
Sequence analysis |
Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftoaxt |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftoaxt |
UCSC_Genome_Browser_Utilities |
UCSC Genome Browser Utilities |
Utilities for handling sequences and assemblies from the UCSC Genome Browser project. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
9 |
9 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
9 |
9 |
2 |
2 |
|
|
|
ucsc_netfilter |
ucsc_netfilter |
Filter out parts of net |
2024-09-18 |
http://hgdownload.cse.ucsc.edu/admin/exe/ |
482 |
ucsc-netfilter |
482 |
Up-to-date |
Sequence Analysis |
|
|
Sequence analysis |
Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc_tools/ucsc_netfilter |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netfilter |
UCSC_Genome_Browser_Utilities |
UCSC Genome Browser Utilities |
Utilities for handling sequences and assemblies from the UCSC Genome Browser project. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
9 |
9 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
9 |
9 |
1 |
1 |
|
|
|
ucsc_netsyntenic |
ucsc_netsyntenic |
Add synteny info to a net dataset |
2024-09-04 |
http://hgdownload.cse.ucsc.edu/admin/exe/ |
482 |
ucsc-netsyntenic |
482 |
Up-to-date |
Sequence Analysis |
|
|
Sequence analysis |
Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc_tools/ucsc_netsyntenic |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_netsyntenic |
UCSC_Genome_Browser_Utilities |
UCSC Genome Browser Utilities |
Utilities for handling sequences and assemblies from the UCSC Genome Browser project. |
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
23 |
23 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
23 |
23 |
2 |
2 |
|
|
|
ucsc_nettoaxt |
ucsc_nettoaxt |
Convert net (and chain) to axt format. |
2024-09-19 |
http://hgdownload.cse.ucsc.edu/admin/exe/ |
482 |
ucsc-nettoaxt |
482 |
Up-to-date |
Convert Formats |
|
|
Sequence analysis |
Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc_tools/ucsc_nettoaxt |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_nettoaxt |
UCSC_Genome_Browser_Utilities |
UCSC Genome Browser Utilities |
Utilities for handling sequences and assemblies from the UCSC Genome Browser project. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
8 |
8 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8 |
8 |
1 |
1 |
|
|
|
ucsc_twobittofa |
ucsc-twobittofa |
twoBitToFa is a tool to convert all or part of .2bit file to FASTA |
2016-08-19 |
https://genome.ucsc.edu/goldenpath/help/twoBit.html |
482 |
ucsc-twobittofa |
482 |
Up-to-date |
Convert Formats |
|
|
Sequence analysis |
Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/twobittofa |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/twobittofa |
UCSC_Genome_Browser_Utilities |
UCSC Genome Browser Utilities |
Utilities for handling sequences and assemblies from the UCSC Genome Browser project. |
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
90 |
126 |
460 |
570 |
149 |
150 |
820 |
822 |
2 |
2 |
42 |
42 |
0 |
0 |
0 |
0 |
1434 |
1322 |
278 |
241 |
|
|
|
ucsc_wigtobigwig |
ucsc_wigtobigwig |
converts bedGraph (wig) files into binary bigwig |
2024-01-14 |
https://genome.ucsc.edu/goldenPath/help/bigWig.html |
482 |
ucsc-wigtobigwig |
482 |
Up-to-date |
Convert Formats |
|
|
Sequence analysis |
Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/wigtobigwig |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/wigtobigwig |
UCSC_Genome_Browser_Utilities |
UCSC Genome Browser Utilities |
Utilities for handling sequences and assemblies from the UCSC Genome Browser project. |
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
204 |
204 |
3169 |
3169 |
447 |
447 |
5274 |
5274 |
36 |
36 |
435 |
435 |
0 |
0 |
0 |
0 |
8878 |
8878 |
687 |
687 |
https://usegalaxy.eu/published/workflow?id=489926f9299594fe, https://usegalaxy.eu/published/workflow?id=4ca06bc64bf896a3, https://usegalaxy.eu/published/workflow?id=bffeb3cd0c708441, https://usegalaxy.eu/published/workflow?id=c46345ba876d5bfe, https://usegalaxy.org/published/workflow?id=28e4871410288cb8, https://usegalaxy.org/published/workflow?id=e20e1371e50bdcee |
|
|
umi-tools |
umi_tools_count, umi_tools_dedup, umi_tools_extract, umi_tools_group, umi_tools_whitelist |
UMI-tools extract - Extract UMIs from fastq |
2017-08-09 |
https://github.com/CGATOxford/UMI-tools |
1.1.6 |
umi_tools |
1.1.6 |
Up-to-date |
Sequence Analysis, Transcriptomics, Single Cell |
Sequencing quality control |
Sequencing quality control |
NGS, Sequence sites, features and motifs, Quality affairs |
Sequence sites, features and motifs, Quality affairs |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/umi_tools |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/umi_tools |
umi-tools |
UMI-tools |
Tools for handling Unique Molecular Identifiers in NGS data sets. |
|
5 |
5 |
5 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
5 |
0 |
0 |
0 |
0 |
3 |
5 |
5 |
0 |
568 |
655 |
56600 |
71181 |
572 |
572 |
10626 |
10628 |
114 |
114 |
14499 |
14499 |
5 |
5 |
44 |
44 |
96352 |
81769 |
1346 |
1259 |
https://dev.workflowhub.eu/workflows/1214?version=1, https://dev.workflowhub.eu/workflows/1285?version=2, https://dev.workflowhub.eu/workflows/1397?version=1, https://usegalaxy.eu/published/workflow?id=06fe33c4420906bf, https://usegalaxy.eu/published/workflow?id=0821ec1cb4d6f30b, https://usegalaxy.eu/published/workflow?id=08cfb9b21c1ec808, https://usegalaxy.eu/published/workflow?id=0c619b25c1394a09, https://usegalaxy.eu/published/workflow?id=153ba1581743d31f, https://usegalaxy.eu/published/workflow?id=24ddd188da35b061, https://usegalaxy.eu/published/workflow?id=26185e8fa5a9b988, https://usegalaxy.eu/published/workflow?id=44c5999436da5f1e, https://usegalaxy.eu/published/workflow?id=49073a24429d93d6, https://usegalaxy.eu/published/workflow?id=6514e610c79df72c, https://usegalaxy.eu/published/workflow?id=8fb156020285e049, https://usegalaxy.eu/published/workflow?id=a1e09c648d8f1fc7, https://usegalaxy.eu/published/workflow?id=af7c349497a75314, https://usegalaxy.eu/published/workflow?id=b619339f4e1c6fdf, https://usegalaxy.eu/published/workflow?id=c64b219b4031fabd, https://usegalaxy.eu/published/workflow?id=c6b22fc33b569c8f, https://usegalaxy.eu/published/workflow?id=ca9d3233b0912765, https://usegalaxy.eu/published/workflow?id=d4b3da4cc5a50044, https://usegalaxy.eu/published/workflow?id=d7aa4c258e2edc95, https://usegalaxy.eu/published/workflow?id=edbdbe7aa21ceba0, https://usegalaxy.eu/published/workflow?id=f5be5bcf9b9f171c, https://usegalaxy.eu/published/workflow?id=f841e1207611f28f, https://usegalaxy.org.au/published/workflow?id=7ae06a27188b9438, https://usegalaxy.org.au/published/workflow?id=94c7fdcbbc7b428a, https://usegalaxy.org.au/published/workflow?id=dccc8fb49d61ac33, https://usegalaxy.org/published/workflow?id=b1b75a9323d25085, https://workflowhub.eu/workflows/1494?version=1, https://workflowhub.eu/workflows/1507?version=1, https://workflowhub.eu/workflows/1706?version=1 |
single-cell/scrna-preprocessing, single-cell/scrna-umis, transcriptomics/clipseq |
|
unicycler |
unicycler |
Unicycler is a hybrid assembly pipeline for bacterial genomes. |
2017-05-08 |
https://github.com/rrwick/Unicycler |
0.5.1 |
unicycler |
0.5.1 |
Up-to-date |
Assembly |
Genome assembly, Aggregation |
Genome assembly, Aggregation |
Microbiology, Genomics, Sequencing, Sequence assembly |
Microbiology, Genomics, Sequencing, Sequence assembly |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/unicycler |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/unicycler |
unicycler |
Unicycler |
A tool for assembling bacterial genomes from a combination of short (2nd generation) and long (3rd generation) sequencing reads. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
4157 |
4473 |
76735 |
83979 |
5452 |
8063 |
61814 |
95623 |
2194 |
2298 |
19779 |
22043 |
226 |
226 |
1516 |
1516 |
203161 |
159844 |
15060 |
12029 |
https://dev.workflowhub.eu/workflows/1000?version=1, https://dev.workflowhub.eu/workflows/1107?version=1, https://dev.workflowhub.eu/workflows/1132?version=2, https://dev.workflowhub.eu/workflows/1182?version=2, https://dev.workflowhub.eu/workflows/1197?version=2, https://dev.workflowhub.eu/workflows/39?version=1, https://usegalaxy.eu/published/workflow?id=165089132248a0b0, https://usegalaxy.eu/published/workflow?id=249c115413f17f28, https://usegalaxy.eu/published/workflow?id=24eaa682897379c8, https://usegalaxy.eu/published/workflow?id=2e0075791f7fa384, https://usegalaxy.eu/published/workflow?id=346b46e6316c6950, https://usegalaxy.eu/published/workflow?id=374797e58377c40f, https://usegalaxy.eu/published/workflow?id=39837ca09374598b, https://usegalaxy.eu/published/workflow?id=44e53ea319e07daa, https://usegalaxy.eu/published/workflow?id=7b755497d168cb13, https://usegalaxy.eu/published/workflow?id=842e0ea7b1eb56af, https://usegalaxy.eu/published/workflow?id=8f3ce55d44d9f369, https://usegalaxy.eu/published/workflow?id=9219557de92e0203, https://usegalaxy.eu/published/workflow?id=b2b46e71046b1999, https://usegalaxy.eu/published/workflow?id=b2dfa74f55a73409, https://usegalaxy.eu/published/workflow?id=c48807045e258dd8, https://usegalaxy.eu/published/workflow?id=c702c76cadebac30, https://usegalaxy.eu/published/workflow?id=dc7107896a3f2964, https://usegalaxy.eu/published/workflow?id=e8eb80ee09159bac, https://usegalaxy.eu/published/workflow?id=ea485dbabc76488d, https://usegalaxy.eu/published/workflow?id=ecf48fa50af560a0, https://usegalaxy.eu/published/workflow?id=fe43cf59e48bf556, https://usegalaxy.fr/published/workflow?id=5bb882218afda132, https://usegalaxy.org.au/published/workflow?id=38d992baf9a2a2bc, https://usegalaxy.org.au/published/workflow?id=8a40059343cf4b87, https://usegalaxy.org.au/published/workflow?id=8f7d5ebead46a6d0, https://usegalaxy.org.au/published/workflow?id=9c60b83feaa22415, https://usegalaxy.org.au/published/workflow?id=b59fada651043735, https://usegalaxy.org.au/published/workflow?id=b7aa22291322e505, https://usegalaxy.org.au/published/workflow?id=c9b7de574fb2f2d5, https://usegalaxy.org.au/published/workflow?id=d9571b3dfef34e5e, https://usegalaxy.org.au/published/workflow?id=f01be6a7685ac476, https://usegalaxy.org.au/published/workflow?id=fc3c83b11f527977, https://usegalaxy.org/published/workflow?id=5039ae2c81d0aba8, https://usegalaxy.org/published/workflow?id=69514a75e4c9af08, https://usegalaxy.org/published/workflow?id=8111bb9bb26bb665, https://usegalaxy.org/published/workflow?id=a67afbea4b2eb26b, https://usegalaxy.org/published/workflow?id=b43b72dcf5f7694d, https://usegalaxy.org/published/workflow?id=bc72dcbca89ca35d, https://usegalaxy.org/published/workflow?id=c65bec6c332bf740, https://usegalaxy.org/published/workflow?id=db0671862a57968d, https://workflowhub.eu/workflows/1477?version=1, https://workflowhub.eu/workflows/1598?version=1, https://workflowhub.eu/workflows/1612?version=1, https://workflowhub.eu/workflows/1616?version=1, https://workflowhub.eu/workflows/38?version=1, https://workflowhub.eu/workflows/406?version=1, https://workflowhub.eu/workflows/52?version=1, https://workflowhub.eu/workflows/68?version=1 |
assembly/assembly-with-preprocessing, assembly/unicycler-assembly, microbiome/plasmid-metagenomics-nanopore |
|
upsetplot |
rcx_upsetplot |
Upset plot visualization tool using UpSetR |
2025-04-17 |
https://github.com/galaxyproject/tools-iuc |
1.4.0 |
r-upsetr |
1.0.3 |
To update |
Visualization |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/upsetr |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/upsetr |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
usher |
usher_matutils, usher |
UShER toolkit wrappers |
2021-05-11 |
https://github.com/yatisht/usher |
0.2.1 |
usher |
0.6.6 |
To update |
Phylogenetics |
Classification, Phylogenetic tree visualisation, Phylogenetic inference (from molecular sequences) |
Classification, Phylogenetic tree visualisation, Phylogenetic inference (from molecular sequences) |
Phylogeny, Evolutionary biology, Cladistics, Genotype and phenotype, Phylogenomics |
Cladistics, Genotype and phenotype, Phylogenomics |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/usher |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/usher |
usher |
usher |
The UShER toolkit includes a set of tools for for rapid, accurate placement of samples to existing phylogenies. While not restricted to SARS-CoV-2 phylogenetic analyses, it has enabled real-time phylogenetic analyses and genomic contact tracing in that its placement is orders of magnitude faster and more memory-efficient than previous methods. |
|
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
5 |
5 |
1060 |
1060 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1060 |
1060 |
5 |
5 |
|
|
|
valet |
valet |
A pipeline for detecting mis-assemblies in metagenomic assemblies. |
2017-11-16 |
https://github.com/marbl/VALET |
|
valet |
1.0 |
To update |
Metagenomics |
Sequence assembly, Sequence assembly visualisation |
Sequence assembly, Sequence assembly visualisation |
Metagenomics, Sequence assembly |
Metagenomics, Sequence assembly |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/valet |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/valet |
valet |
VALET |
VALET is a pipeline for detecting mis-assemblies in metagenomic assemblies. |
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
74 |
94 |
485 |
696 |
71 |
71 |
242 |
242 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
938 |
727 |
165 |
145 |
https://usegalaxy.eu/published/workflow?id=1524b189069b42a5, https://usegalaxy.eu/published/workflow?id=579ff83177c5ee09 |
|
|
vapor |
vapor |
Classify Influenza samples from raw short read sequence data |
2022-08-24 |
https://github.com/connor-lab/vapor |
1.0.2 |
vapor |
1.0.2 |
Up-to-date |
Sequence Analysis |
Data retrieval, De-novo assembly, Read mapping |
Data retrieval, De-novo assembly, Read mapping |
Whole genome sequencing, Mapping, Sequence assembly |
Whole genome sequencing, Mapping, Sequence assembly |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/vapor |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/vapor |
vapor |
VAPOR |
VAPOR is a tool for classification of Influenza samples from raw short read sequence data for downstream bioinformatics analysis. VAPOR is provided with a fasta file of full-length sequences (> 20,000) for a given segment, a set of reads, and attempts to retrieve a reference that is closest to the sample strain. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
157 |
157 |
71831 |
71831 |
22 |
22 |
708 |
708 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
72539 |
72539 |
179 |
179 |
https://usegalaxy.eu/published/workflow?id=629e57958afed44c, https://usegalaxy.eu/published/workflow?id=a15dabcadb63b46d, https://usegalaxy.eu/published/workflow?id=c789ab71876c6ead, https://usegalaxy.eu/published/workflow?id=cd25f70f71683ab6, https://usegalaxy.org/published/workflow?id=1518c8c50747a1c1, https://usegalaxy.org/published/workflow?id=97263f3308077ff0, https://workflowhub.eu/workflows/1260?version=2 |
variant-analysis/aiv-analysis |
|
vardict_java |
vardict_java |
VarDict - calls SNVs and indels for tumour-normal pairs |
2020-08-21 |
https://github.com/AstraZeneca-NGS/VarDictJava |
1.8.3 |
python |
|
To update |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/vardict |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
39 |
39 |
387 |
387 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
387 |
387 |
39 |
39 |
https://workflowhub.eu/workflows/1738?version=1, https://workflowhub.eu/workflows/1739?version=1, https://workflowhub.eu/workflows/1740?version=1, https://workflowhub.eu/workflows/1741?version=1, https://workflowhub.eu/workflows/517?version=1, https://workflowhub.eu/workflows/518?version=1 |
|
|
variant_analyzer |
mut2read, mut2sscs, read2mut |
Collection of tools for analyzing variants in duplex consensus sequencing (DCS) data |
2019-11-20 |
|
2.0.0 |
matplotlib |
|
To update |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/variant_analyzer |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/variant_analyzer |
|
|
|
|
3 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
3 |
0 |
6 |
6 |
86 |
95 |
29 |
29 |
536 |
557 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
652 |
622 |
35 |
35 |
|
|
|
varscan |
varscan_copynumber, varscan_mpileup, varscan_somatic |
VarScan is a variant caller for high-throughput sequencing data |
2018-07-10 |
https://dkoboldt.github.io/varscan/ |
2.4.3 |
varscan |
2.4.6 |
To update |
Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/iuc/tree/master/tools/varscan |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/varscan |
|
|
|
|
3 |
3 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
3 |
3 |
3 |
0 |
727 |
820 |
10551 |
12161 |
2352 |
2355 |
18710 |
18756 |
89 |
89 |
1239 |
1239 |
280 |
280 |
951 |
951 |
33107 |
31451 |
3544 |
3448 |
https://dev.workflowhub.eu/workflows/1081?version=1, https://usegalaxy.eu/published/workflow?id=220961d803697f54, https://usegalaxy.eu/published/workflow?id=231a2dc7412d250b, https://usegalaxy.eu/published/workflow?id=2c3d05023c02113e, https://usegalaxy.eu/published/workflow?id=462582bbc236cb7b, https://usegalaxy.eu/published/workflow?id=4f62794453f65cba, https://usegalaxy.eu/published/workflow?id=5ed38d8114bcd6f7, https://usegalaxy.eu/published/workflow?id=6ed1016dfdf9f928, https://usegalaxy.eu/published/workflow?id=83049910e2cd5128, https://usegalaxy.eu/published/workflow?id=88064e2231165fd2, https://usegalaxy.eu/published/workflow?id=968f0ac2617aa524, https://usegalaxy.eu/published/workflow?id=a4e3667f6879bfaf, https://usegalaxy.eu/published/workflow?id=af30010868c97316, https://usegalaxy.eu/published/workflow?id=c9ef2d2ce92e2dfb, https://usegalaxy.org/published/workflow?id=0ee0493f3168cbb3, https://usegalaxy.org/published/workflow?id=18c6e87a884fb5ed, https://usegalaxy.org/published/workflow?id=3dbe754882a263cd, https://usegalaxy.org/published/workflow?id=4cbb8181cfdf55d9, https://usegalaxy.org/published/workflow?id=7c5e8394ce29288d, https://usegalaxy.org/published/workflow?id=bf90f2bd20fbff21, https://workflowhub.eu/workflows/1678?version=1, https://workflowhub.eu/workflows/36?version=1, https://workflowhub.eu/workflows/628?version=1 |
variant-analysis/somatic-variants |
|
varvamp |
varvamp |
Variable VirusAMPlicons (varVAMP) is a tool to design primers for highly diverse viruses |
2024-01-27 |
https://github.com/jonas-fuchs/varVAMP/ |
1.2.2 |
varvamp |
1.2.2 |
Up-to-date |
Sequence Analysis |
PCR primer design |
PCR primer design |
Virology, Probes and primers |
Virology, Probes and primers |
iuc |
https://github.com/jonas-fuchs/varVAMP |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/varvamp |
varvamp |
varVAMP |
variable VirusAMPlicons (varVAMP) is a tool to design primers for highly diverse viruses. The input is an alignment of your viral (full-genome) sequences. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
21 |
21 |
438 |
438 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
438 |
438 |
21 |
21 |
https://workflowhub.eu/workflows/1627?version=1 |
sequence-analysis/viral_primer_design |
|
vcf2maf |
vcf2maf |
vcf2maf: Convert VCF into MAF |
2022-06-28 |
https://github.com/mskcc/vcf2maf |
1.6.21 |
vcf2maf |
1.6.22 |
To update |
Convert Formats |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/vcf2maf |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
53 |
53 |
1411 |
1411 |
0 |
0 |
0 |
0 |
5 |
5 |
87 |
87 |
0 |
0 |
0 |
0 |
1498 |
1498 |
58 |
58 |
https://usegalaxy.eu/published/workflow?id=1da86d74f8535f4e, https://usegalaxy.eu/published/workflow?id=2424282f793f0f1b, https://usegalaxy.eu/published/workflow?id=5ed38d8114bcd6f7, https://usegalaxy.eu/published/workflow?id=ce1712139b4a4273, https://workflowhub.eu/workflows/607?version=1, https://workflowhub.eu/workflows/629?version=1 |
|
|
vcf2tsv |
vcf2tsv |
Converts VCF files into tab-delimited format |
2017-01-24 |
https://github.com/ekg/vcflib |
|
vcflib |
1.0.14 |
To update |
Variant Analysis, Convert Formats |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/vcflib/vcf2tsv |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
885 |
961 |
171548 |
172727 |
1093 |
2700 |
15916 |
43209 |
173 |
179 |
3405 |
3468 |
73 |
73 |
254 |
254 |
219658 |
191123 |
3913 |
2224 |
https://dev.workflowhub.eu/workflows/1100?version=2, https://usegalaxy.eu/published/workflow?id=21a39ac4c1becb31, https://usegalaxy.eu/published/workflow?id=291c36e1b18e9deb, https://usegalaxy.eu/published/workflow?id=3d8aa05129e44fdf, https://usegalaxy.eu/published/workflow?id=4d80a87510b2a54e, https://usegalaxy.eu/published/workflow?id=5a16af00bf8bf57b, https://usegalaxy.eu/published/workflow?id=61fe08fb3d5e83f8, https://usegalaxy.eu/published/workflow?id=a2d4221ad117c378, https://usegalaxy.org.au/published/workflow?id=2362ff8880213586, https://usegalaxy.org.au/published/workflow?id=3e6f755ee62f7301, https://usegalaxy.org.au/published/workflow?id=e154a9b605ea0886, https://usegalaxy.org/published/workflow?id=3d5347f1e8ee7db2, https://usegalaxy.org/published/workflow?id=415c7152cb78e86f, https://usegalaxy.org/published/workflow?id=43861b38cf6e927e, https://usegalaxy.org/published/workflow?id=4dbac8374419d29e, https://usegalaxy.org/published/workflow?id=4ed9f54caa932479, https://usegalaxy.org/published/workflow?id=50206b10de958d03, https://usegalaxy.org/published/workflow?id=57cfc1b5d9ea0d72, https://usegalaxy.org/published/workflow?id=5cad854edbbd3b69, https://usegalaxy.org/published/workflow?id=68d41ffbf92b2a8e, https://usegalaxy.org/published/workflow?id=bb16936081b820f6, https://usegalaxy.org/published/workflow?id=fae519dcba6bfc72, https://workflowhub.eu/workflows/1628?version=1, https://workflowhub.eu/workflows/1659?version=1 |
variant-analysis/baculovirus-isolate-variation, variant-analysis/non-dip |
|
vcfaddinfo |
vcfaddinfo |
Adds info fields from the second dataset which are not present in the first dataset. |
2017-01-24 |
https://github.com/ekg/vcflib |
|
vcflib |
1.0.14 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfaddinfo |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/vcflib/vcfaddinfo |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
30 |
32 |
875 |
888 |
35 |
115 |
6513 |
9000 |
7 |
7 |
181 |
206 |
0 |
0 |
0 |
0 |
10094 |
7569 |
154 |
72 |
|
|
|
vcfallelicprimitives |
vcfallelicprimitives |
Splits alleleic primitives (gaps or mismatches) into multiple VCF lines |
2017-01-24 |
https://github.com/ekg/vcflib |
|
vcflib |
1.0.14 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfallelicprimitives |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/vcflib/vcfallelicprimitives |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
912 |
1273 |
5047 |
18602 |
1242 |
2023 |
7569 |
14895 |
208 |
240 |
2162 |
2251 |
3 |
3 |
5 |
5 |
35753 |
14783 |
3539 |
2365 |
https://dev.workflowhub.eu/workflows/1104?version=1, https://usegalaxy.eu/published/workflow?id=2f1ee01aeee2b9f0, https://usegalaxy.eu/published/workflow?id=4a89ddab941c6819, https://usegalaxy.eu/published/workflow?id=a4e3667f6879bfaf, https://usegalaxy.eu/published/workflow?id=ad609d1a3de251f5, https://usegalaxy.eu/published/workflow?id=b02d90c32dc67730, https://usegalaxy.eu/published/workflow?id=ffe93ec81afefd09, https://usegalaxy.org.au/published/workflow?id=738c0e8227519c25, https://usegalaxy.org.au/published/workflow?id=ac89c2d51c32cc9c, https://usegalaxy.org/published/workflow?id=70dacee3da375e2b, https://workflowhub.eu/workflows/1655?version=1, https://workflowhub.eu/workflows/35?version=1, https://workflowhub.eu/workflows/36?version=1 |
variant-analysis/dip |
|
vcfanno |
vcfanno |
Annotate VCF files |
2021-01-17 |
https://github.com/brentp/vcfanno |
0.3.6 |
vcfanno |
0.3.6 |
Up-to-date |
Variant Analysis |
SNP annotation |
SNP annotation |
Genetic variation, Data submission, annotation and curation |
Genetic variation, Data submission, annotation and curation |
iuc |
https://github.com/galaxyproject/tools-iuc/vcfanno/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/vcfanno |
vcfanno |
vcfanno |
Fast, flexible annotation of genetic variants. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
190 |
190 |
1187 |
1187 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1187 |
1187 |
190 |
190 |
https://usegalaxy.eu/published/workflow?id=1da86d74f8535f4e, https://usegalaxy.eu/published/workflow?id=2424282f793f0f1b, https://usegalaxy.eu/published/workflow?id=5ed38d8114bcd6f7, https://usegalaxy.eu/published/workflow?id=ce1712139b4a4273, https://workflowhub.eu/workflows/607?version=1, https://workflowhub.eu/workflows/629?version=1 |
|
|
vcfannotate |
vcfannotate |
Intersect VCF records with BED annotations |
2017-01-24 |
https://github.com/ekg/vcflib |
|
vcflib |
1.0.14 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfannotate |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/vcflib/vcfannotate |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
158 |
187 |
2819 |
2887 |
668 |
1457 |
3632 |
14750 |
63 |
67 |
642 |
673 |
5 |
5 |
6 |
6 |
18316 |
7099 |
1716 |
894 |
https://usegalaxy.org.au/published/workflow?id=142e5f7c1f340838, https://usegalaxy.org.au/published/workflow?id=4871f853090e8be8, https://usegalaxy.org/published/workflow?id=3e2bbafb8c6580af |
|
|
vcfannotategenotypes |
vcfannotategenotypes |
Annotate genotypes in a VCF dataset using genotypes from another VCF dataset. |
2017-01-24 |
https://github.com/ekg/vcflib |
|
vcflib |
1.0.14 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfannotategenotypes |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/vcflib/vcfannotategenotypes |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
64 |
70 |
186 |
210 |
150 |
397 |
474 |
1843 |
11 |
11 |
190 |
218 |
1 |
1 |
3 |
3 |
2274 |
853 |
479 |
226 |
|
|
|
vcfbedintersect |
vcfbedintersect |
Intersect VCF and BED datasets |
2017-01-24 |
https://github.com/ekg/vcflib |
|
vcflib |
1.0.14 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfbedintersect |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/vcflib/vcfbedintersect |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
192 |
221 |
3123 |
4225 |
428 |
1209 |
4828 |
20678 |
43 |
45 |
536 |
588 |
2 |
2 |
7 |
7 |
25498 |
8494 |
1477 |
665 |
https://usegalaxy.org/published/workflow?id=6da54816b436dc58, https://usegalaxy.org/published/workflow?id=9b81d47a468d6f99 |
|
|
vcfbreakcreatemulti |
vcfbreakcreatemulti |
Break multiple alleles into multiple records, or combine overallpoing alleles into a single record |
2017-01-24 |
https://github.com/ekg/vcflib |
|
vcflib |
1.0.14 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfbreakcreatemulti |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/vcflib/vcfbreakcreatemulti |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
34 |
40 |
399 |
478 |
79 |
314 |
3952 |
10504 |
8 |
8 |
374 |
420 |
1 |
1 |
1 |
1 |
11403 |
4726 |
363 |
122 |
https://usegalaxy.org/published/workflow?id=df6c398b2d4f1e99 |
|
|
vcfcheck |
vcfcheck |
Verify that the reference allele matches the reference genome |
2017-01-24 |
https://github.com/ekg/vcflib |
|
vcflib |
1.0.14 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfcheck |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/vcflib/vcfcheck |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
103 |
114 |
1607 |
1637 |
220 |
645 |
795 |
1934 |
16 |
17 |
248 |
279 |
1 |
1 |
1 |
1 |
3851 |
2651 |
777 |
340 |
https://usegalaxy.org/published/workflow?id=eb4b32fcf4a9f64a |
|
|
vcfcombine |
vcfcombine |
Combine multiple VCF datasets |
2017-01-24 |
https://github.com/ekg/vcflib |
|
vcflib |
1.0.14 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfcombine |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/vcflib/vcfcombine |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
310 |
539 |
1510 |
2177 |
1074 |
2808 |
4745 |
19984 |
65 |
67 |
500 |
544 |
5 |
5 |
9 |
9 |
22714 |
6764 |
3419 |
1454 |
https://usegalaxy.eu/published/workflow?id=a2d4221ad117c378, https://usegalaxy.eu/published/workflow?id=ddd604341afd9cf7, https://usegalaxy.org/published/workflow?id=2478426a119d9d93, https://usegalaxy.org/published/workflow?id=2d44e2b020bf94f8, https://usegalaxy.org/published/workflow?id=865d2cc4d14ec7e1, https://usegalaxy.org/published/workflow?id=c4a1246974f279c5, https://usegalaxy.org/published/workflow?id=d3e656ab45f40c11, https://usegalaxy.org/published/workflow?id=d43b771d93f0f609, https://usegalaxy.org/published/workflow?id=e2432c4d2b61705a |
|
|
vcfcommonsamples |
vcfcommonsamples |
Output records belonging to samples commong between two datasets. |
2017-01-24 |
https://github.com/ekg/vcflib |
|
vcflib |
1.0.14 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfcommonsamples |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/vcflib/vcfcommonsamples |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
36 |
44 |
226 |
258 |
79 |
291 |
248 |
1877 |
10 |
12 |
199 |
235 |
3 |
3 |
15 |
15 |
2385 |
688 |
350 |
128 |
|
|
|
vcfdistance |
vcfdistance |
Calculate distance to the nearest variant. |
2017-01-24 |
https://github.com/ekg/vcflib |
|
vcflib |
1.0.14 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfdistance |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/vcflib/vcfdistance |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
92 |
95 |
559 |
589 |
139 |
307 |
2019 |
2446 |
20 |
23 |
275 |
312 |
2 |
2 |
2 |
2 |
3349 |
2855 |
427 |
253 |
|
|
|
vcffilter |
vcffilter2 |
Tool for filtering VCF files |
2017-01-24 |
https://github.com/ekg/vcflib |
|
vcflib |
1.0.14 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcffilter |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/vcflib/vcffilter |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
2411 |
2578 |
39849 |
50186 |
5825 |
11121 |
74909 |
167761 |
342 |
360 |
3198 |
3356 |
51 |
51 |
200 |
200 |
221503 |
118156 |
14110 |
8629 |
https://dev.workflowhub.eu/workflows/1100?version=2, https://usegalaxy.eu/published/workflow?id=22454322d370b3ff, https://usegalaxy.eu/published/workflow?id=291c36e1b18e9deb, https://usegalaxy.eu/published/workflow?id=2a13eb981d6ee36e, https://usegalaxy.eu/published/workflow?id=3b7c0b64033f38ac, https://usegalaxy.eu/published/workflow?id=533819bcb5aa78c5, https://usegalaxy.eu/published/workflow?id=591ebf913450f49e, https://usegalaxy.eu/published/workflow?id=5a16af00bf8bf57b, https://usegalaxy.eu/published/workflow?id=5e3c352233aa7a52, https://usegalaxy.eu/published/workflow?id=6a5c39c1d38a10c2, https://usegalaxy.eu/published/workflow?id=865f470be3c18b08, https://usegalaxy.eu/published/workflow?id=88064e2231165fd2, https://usegalaxy.eu/published/workflow?id=8ab6a554cdea5195, https://usegalaxy.eu/published/workflow?id=99799eec4497f977, https://usegalaxy.eu/published/workflow?id=a62f21701ff37788, https://usegalaxy.eu/published/workflow?id=ea0524e0b5eab8b9, https://usegalaxy.eu/published/workflow?id=f560e06d23818b4c, https://usegalaxy.eu/published/workflow?id=fba10ba449498bb5, https://usegalaxy.org.au/published/workflow?id=0f48060aa1bd41a5, https://usegalaxy.org.au/published/workflow?id=2362ff8880213586, https://usegalaxy.org.au/published/workflow?id=38f57cffaeb0e39f, https://usegalaxy.org.au/published/workflow?id=3e6f755ee62f7301, https://usegalaxy.org.au/published/workflow?id=46f352c70356184a, https://usegalaxy.org.au/published/workflow?id=79f4bdf9aab7c256, https://usegalaxy.org.au/published/workflow?id=83c20d8e5fd97313, https://usegalaxy.org/published/workflow?id=00381bbae3fd7e78, https://usegalaxy.org/published/workflow?id=01585f1230125ba1, https://usegalaxy.org/published/workflow?id=02755c14619242da, https://usegalaxy.org/published/workflow?id=02c96a9c6bb708ac, https://usegalaxy.org/published/workflow?id=049e6609da2b67c4, https://usegalaxy.org/published/workflow?id=05bf642dc7c58c40, https://usegalaxy.org/published/workflow?id=0660a00407fc16a1, https://usegalaxy.org/published/workflow?id=06d6dcd2655592af, https://usegalaxy.org/published/workflow?id=0843c6f15eae2f15, https://usegalaxy.org/published/workflow?id=0a57740c68e85e21, https://usegalaxy.org/published/workflow?id=0a89328e6d28dd07, https://usegalaxy.org/published/workflow?id=0c6dbb2ef5eee5b9, https://usegalaxy.org/published/workflow?id=0cbab8b7044d24f9, https://usegalaxy.org/published/workflow?id=0d8eb75d28fa7df2, https://usegalaxy.org/published/workflow?id=0d8ec47a84766f96, https://usegalaxy.org/published/workflow?id=0f43ad9dfd0f6d16, https://usegalaxy.org/published/workflow?id=10d8d47f97afc999, https://usegalaxy.org/published/workflow?id=17a7ff756d37a437, https://usegalaxy.org/published/workflow?id=17a969fa9ac02cec, https://usegalaxy.org/published/workflow?id=1b4ac2bc54435ae4, https://usegalaxy.org/published/workflow?id=1d748868e78275dd, https://usegalaxy.org/published/workflow?id=1deaf458d6d8695a, https://usegalaxy.org/published/workflow?id=1e53fcd07ae5d859, https://usegalaxy.org/published/workflow?id=1e6a0d6395cf6221, https://usegalaxy.org/published/workflow?id=1f4dc0488f0554c6, https://usegalaxy.org/published/workflow?id=1fdd58f4b7a6f643, https://usegalaxy.org/published/workflow?id=20023b26bb60f4df, https://usegalaxy.org/published/workflow?id=202648c6c615929b, https://usegalaxy.org/published/workflow?id=20fe561687df596c, https://usegalaxy.org/published/workflow?id=21a047a4e068860f, https://usegalaxy.org/published/workflow?id=22f6b939e97d3b47, https://usegalaxy.org/published/workflow?id=23c4e801213eee50, https://usegalaxy.org/published/workflow?id=24663ad42c78106c, https://usegalaxy.org/published/workflow?id=2497103d279cd20e, https://usegalaxy.org/published/workflow?id=2524e026f069e885, https://usegalaxy.org/published/workflow?id=262ab42118016c41, https://usegalaxy.org/published/workflow?id=2644a8c0da3066c5, https://usegalaxy.org/published/workflow?id=26c4909f2f3df704, https://usegalaxy.org/published/workflow?id=270e2cb6b02afc9c, https://usegalaxy.org/published/workflow?id=28abac549697f65a, https://usegalaxy.org/published/workflow?id=2af3de32c630e1b4, https://usegalaxy.org/published/workflow?id=2bf89464c21ec7cd, https://usegalaxy.org/published/workflow?id=2ceff2cf26eae4cd, https://usegalaxy.org/published/workflow?id=2d30be556aab1f52, https://usegalaxy.org/published/workflow?id=2d44e2b020bf94f8, https://usegalaxy.org/published/workflow?id=2db2d27f0c627f44, https://usegalaxy.org/published/workflow?id=2dd4f04c7de7d173, https://usegalaxy.org/published/workflow?id=2e65bc5f9d9f2a75, https://usegalaxy.org/published/workflow?id=31acbfc6d3775846, https://usegalaxy.org/published/workflow?id=3565de0b5f5da36f, https://usegalaxy.org/published/workflow?id=36bd1c3d32150b90, https://usegalaxy.org/published/workflow?id=38cc6577c9b15275, https://usegalaxy.org/published/workflow?id=39753cc73284963f, https://usegalaxy.org/published/workflow?id=399b4543d26990f2, https://usegalaxy.org/published/workflow?id=39e79458c9ba581c, https://usegalaxy.org/published/workflow?id=3bed12ef73ba93bf, https://usegalaxy.org/published/workflow?id=3dc57709c4387ba7, https://usegalaxy.org/published/workflow?id=3e2bbafb8c6580af, https://usegalaxy.org/published/workflow?id=3f2d1003ff959c7c, https://usegalaxy.org/published/workflow?id=4054ceeba1a2fa69, https://usegalaxy.org/published/workflow?id=414fa13b613b33d8, https://usegalaxy.org/published/workflow?id=415c7152cb78e86f, https://usegalaxy.org/published/workflow?id=4164a02a6bd70893, https://usegalaxy.org/published/workflow?id=41bbf3cd893d400a, https://usegalaxy.org/published/workflow?id=43861b38cf6e927e, https://usegalaxy.org/published/workflow?id=43ca7614f6bb03d2, https://usegalaxy.org/published/workflow?id=446a9297e64ecb72, https://usegalaxy.org/published/workflow?id=449a419bcfd3c49e, https://usegalaxy.org/published/workflow?id=46d035f814a9b4f8, https://usegalaxy.org/published/workflow?id=46e4acdc08eb3ea5, https://usegalaxy.org/published/workflow?id=470b41d0e43bb46b, https://usegalaxy.org/published/workflow?id=483a98be358ce21c, https://usegalaxy.org/published/workflow?id=49f8b32c3206f76c, https://usegalaxy.org/published/workflow?id=4d0607d3589e0775, https://usegalaxy.org/published/workflow?id=4d251ecda59c87c5, https://usegalaxy.org/published/workflow?id=4e3efbdd0c4c3e64, https://usegalaxy.org/published/workflow?id=4ed9f54caa932479, https://usegalaxy.org/published/workflow?id=4f459cfef6108e75, https://usegalaxy.org/published/workflow?id=50206b10de958d03, https://usegalaxy.org/published/workflow?id=51754f5039d2f244, https://usegalaxy.org/published/workflow?id=528ed34505b1a993, https://usegalaxy.org/published/workflow?id=529c6c68df669c51, https://usegalaxy.org/published/workflow?id=53f11afc67ffb66f, https://usegalaxy.org/published/workflow?id=55c09bcdf3d7ae16, https://usegalaxy.org/published/workflow?id=57726b39bbfb0c54, https://usegalaxy.org/published/workflow?id=57cfc1b5d9ea0d72, https://usegalaxy.org/published/workflow?id=5951d11d3122abed, https://usegalaxy.org/published/workflow?id=59659e3a065c642c, https://usegalaxy.org/published/workflow?id=5ce5b3061c6afd82, https://usegalaxy.org/published/workflow?id=5eb2e090df59d9a9, https://usegalaxy.org/published/workflow?id=5fa548beeb1411f2, https://usegalaxy.org/published/workflow?id=5ffeb9904cf5f0bf, https://usegalaxy.org/published/workflow?id=60e999ef3dcff4ca, https://usegalaxy.org/published/workflow?id=61d03396ad7f25b9, https://usegalaxy.org/published/workflow?id=62ae08ab1133c22f, https://usegalaxy.org/published/workflow?id=62b052f47ccf0a8c, https://usegalaxy.org/published/workflow?id=63e0dcf18794dbc1, https://usegalaxy.org/published/workflow?id=658f6e4985b6e4a7, https://usegalaxy.org/published/workflow?id=67e3457099db3ed2, https://usegalaxy.org/published/workflow?id=67e56a9919ed84f7, https://usegalaxy.org/published/workflow?id=6822f413a3b09cb4, https://usegalaxy.org/published/workflow?id=688a55b9ec2f5bf7, https://usegalaxy.org/published/workflow?id=68d05aae72fcd2c9, https://usegalaxy.org/published/workflow?id=692a2b0bb818336d, https://usegalaxy.org/published/workflow?id=695152887ca01bf0, https://usegalaxy.org/published/workflow?id=695d20ef3ee4cf1e, https://usegalaxy.org/published/workflow?id=6a08af55c086ec62, https://usegalaxy.org/published/workflow?id=6cb8b40b819f2764, https://usegalaxy.org/published/workflow?id=6d60c4491138813a, https://usegalaxy.org/published/workflow?id=6d8f0be547b12528, https://usegalaxy.org/published/workflow?id=6dd383fd86fea674, https://usegalaxy.org/published/workflow?id=71f129d96b81851e, https://usegalaxy.org/published/workflow?id=7203eb3b663bca11, https://usegalaxy.org/published/workflow?id=725f7ffa1cffa069, https://usegalaxy.org/published/workflow?id=729780617ceb80db, https://usegalaxy.org/published/workflow?id=76247065c01f01d1, https://usegalaxy.org/published/workflow?id=779ea0b19d07a1bd, https://usegalaxy.org/published/workflow?id=78979ec454b98338, https://usegalaxy.org/published/workflow?id=78db135e2aa5789d, https://usegalaxy.org/published/workflow?id=7965d84a9f71da93, https://usegalaxy.org/published/workflow?id=7a2b4675c758f34e, https://usegalaxy.org/published/workflow?id=7d110e1fca0ac973, https://usegalaxy.org/published/workflow?id=7decdde67868ed0f, https://usegalaxy.org/published/workflow?id=803215ef8142c069, https://usegalaxy.org/published/workflow?id=8041fad92ef6e904, https://usegalaxy.org/published/workflow?id=840a7be198dc8ae4, https://usegalaxy.org/published/workflow?id=865d2cc4d14ec7e1, https://usegalaxy.org/published/workflow?id=8689dc9eac10c871, https://usegalaxy.org/published/workflow?id=86b802ea75d18160, https://usegalaxy.org/published/workflow?id=884ee0057bde9135, https://usegalaxy.org/published/workflow?id=89660361d4121fa8, https://usegalaxy.org/published/workflow?id=8b08a05c5926dd0f, https://usegalaxy.org/published/workflow?id=8b133c1d302c8681, https://usegalaxy.org/published/workflow?id=8c1516493c55bf7d, https://usegalaxy.org/published/workflow?id=8c4fcd4bd9d5a72d, https://usegalaxy.org/published/workflow?id=8caea3788657235d, https://usegalaxy.org/published/workflow?id=8daa91d54040ba95, https://usegalaxy.org/published/workflow?id=906cc2c2d4e24483, https://usegalaxy.org/published/workflow?id=99bc7ba3faa7ed55, https://usegalaxy.org/published/workflow?id=9b32025036bdacb9, https://usegalaxy.org/published/workflow?id=9b4323b68f609e06, https://usegalaxy.org/published/workflow?id=9b81d47a468d6f99, https://usegalaxy.org/published/workflow?id=9c0bbf9e1c90cd66, https://usegalaxy.org/published/workflow?id=9d2d8c39b63d8ef0, https://usegalaxy.org/published/workflow?id=9d456396b9cd79d7, https://usegalaxy.org/published/workflow?id=9f5f2e309a3ea50c, https://usegalaxy.org/published/workflow?id=a3f7a57dbf8f0741, https://usegalaxy.org/published/workflow?id=a4f7af1e2cd826c3, https://usegalaxy.org/published/workflow?id=a7ecb65025ad9c86, https://usegalaxy.org/published/workflow?id=a89eaad3f42ec41c, https://usegalaxy.org/published/workflow?id=a98a3ac1a41752bc, https://usegalaxy.org/published/workflow?id=ab6e4277fc825c5d, https://usegalaxy.org/published/workflow?id=ab8590a0ee1b9951, https://usegalaxy.org/published/workflow?id=ad6143e2f74e1e94, https://usegalaxy.org/published/workflow?id=adf531bc12766c9b, https://usegalaxy.org/published/workflow?id=ae83fb92e697e009, https://usegalaxy.org/published/workflow?id=af5acb5dd7bfac56, https://usegalaxy.org/published/workflow?id=b16a1642e2cd54a2, https://usegalaxy.org/published/workflow?id=b300d028da9b8396, https://usegalaxy.org/published/workflow?id=b33ad2032a655706, https://usegalaxy.org/published/workflow?id=b461ac6f18e0c9cf, https://usegalaxy.org/published/workflow?id=b4d57f2aa0678ad2, https://usegalaxy.org/published/workflow?id=b50f2446d5e60334, https://usegalaxy.org/published/workflow?id=b52561ed53c305db, https://usegalaxy.org/published/workflow?id=b561d3d9645a2726, https://usegalaxy.org/published/workflow?id=b6d90898e2db6aba, https://usegalaxy.org/published/workflow?id=b8804291f2754fc8, https://usegalaxy.org/published/workflow?id=b9e6ddbc79904844, https://usegalaxy.org/published/workflow?id=ba405b449e27ba37, https://usegalaxy.org/published/workflow?id=ba68fd4b4348e63c, https://usegalaxy.org/published/workflow?id=baab0758f2240225, https://usegalaxy.org/published/workflow?id=bb16936081b820f6, https://usegalaxy.org/published/workflow?id=bbe958a8c0bf4955, https://usegalaxy.org/published/workflow?id=bd00c8a7a3b7e5be, https://usegalaxy.org/published/workflow?id=bd184804cfddafc4, https://usegalaxy.org/published/workflow?id=bfd3ba54576d2d81, https://usegalaxy.org/published/workflow?id=bfee1238c70627cb, https://usegalaxy.org/published/workflow?id=c11dfc3314e33b33, https://usegalaxy.org/published/workflow?id=c337e5265a8079d0, https://usegalaxy.org/published/workflow?id=c4aaf11b0cb6e5ac, https://usegalaxy.org/published/workflow?id=c4af6c5f5dfaae82, https://usegalaxy.org/published/workflow?id=c57c820557ae9b55, https://usegalaxy.org/published/workflow?id=c828990fb009e318, https://usegalaxy.org/published/workflow?id=c95fc8692a886a59, https://usegalaxy.org/published/workflow?id=c9e442a395fc1a58, https://usegalaxy.org/published/workflow?id=cb03300161109123, https://usegalaxy.org/published/workflow?id=cc6ee582a6e5cae2, https://usegalaxy.org/published/workflow?id=ced446bf2428497b, https://usegalaxy.org/published/workflow?id=cfd37af9d6e4cbdb, https://usegalaxy.org/published/workflow?id=d0981820adf9c7d2, https://usegalaxy.org/published/workflow?id=d196c3bde666eccb, https://usegalaxy.org/published/workflow?id=d2edc47cc7963885, https://usegalaxy.org/published/workflow?id=d314df52f2f51502, https://usegalaxy.org/published/workflow?id=d3eae9943ce2a62b, https://usegalaxy.org/published/workflow?id=d43b771d93f0f609, https://usegalaxy.org/published/workflow?id=d50b2df115706adb, https://usegalaxy.org/published/workflow?id=d7049965ca7d8ea9, https://usegalaxy.org/published/workflow?id=d7d65ee5c5ca951f, https://usegalaxy.org/published/workflow?id=d7e14ff032a6ac4f, https://usegalaxy.org/published/workflow?id=d85f8ef78040fbb1, https://usegalaxy.org/published/workflow?id=db8443163482a2e0, https://usegalaxy.org/published/workflow?id=dbcf0fbf5329b3fb, https://usegalaxy.org/published/workflow?id=dbdc894ad54675a8, https://usegalaxy.org/published/workflow?id=dddd23119443b85e, https://usegalaxy.org/published/workflow?id=de2861cdbd4e29ce, https://usegalaxy.org/published/workflow?id=df1fa0b73f741a9c, https://usegalaxy.org/published/workflow?id=e2c77aeabb8053b4, https://usegalaxy.org/published/workflow?id=e2d7b8a4e6c422a3, https://usegalaxy.org/published/workflow?id=e51aaf4d6b16b4d4, https://usegalaxy.org/published/workflow?id=e67db5dc8eab60f3, https://usegalaxy.org/published/workflow?id=e6a6223ef5ef85a7, https://usegalaxy.org/published/workflow?id=e6b803c1232cd08e, https://usegalaxy.org/published/workflow?id=e6f57346a02be07f, https://usegalaxy.org/published/workflow?id=e7030b62a3335bd7, https://usegalaxy.org/published/workflow?id=eb33df15225b8aa0, https://usegalaxy.org/published/workflow?id=ebbcdc389aad0eb8, https://usegalaxy.org/published/workflow?id=ebc9aad36017b567, https://usegalaxy.org/published/workflow?id=ec3d8d5d1531f92e, https://usegalaxy.org/published/workflow?id=ec96e3bf30d5f771, https://usegalaxy.org/published/workflow?id=edb299ecbf147618, https://usegalaxy.org/published/workflow?id=eed1aadf2fb83f6c, https://usegalaxy.org/published/workflow?id=ef44d02a79bd28bf, https://usegalaxy.org/published/workflow?id=f0feca8af9aeddba, https://usegalaxy.org/published/workflow?id=f23e5f333987a89f, https://usegalaxy.org/published/workflow?id=f302d673420a9bdd, https://usegalaxy.org/published/workflow?id=f39603063febba82, https://usegalaxy.org/published/workflow?id=f3ed710e251833a7, https://usegalaxy.org/published/workflow?id=f4ed1c9434ed0445, https://usegalaxy.org/published/workflow?id=f60818a405f1bbbd, https://usegalaxy.org/published/workflow?id=f63f7a0a33a83841, https://usegalaxy.org/published/workflow?id=f88f186bc851e954, https://usegalaxy.org/published/workflow?id=f9d546aae406cf15, https://usegalaxy.org/published/workflow?id=fae519dcba6bfc72, https://usegalaxy.org/published/workflow?id=feeec17310351914, https://workflowhub.eu/workflows/1659?version=1 |
variant-analysis/non-dip |
|
vcffixup |
vcffixup |
Count the allele frequencies across alleles present in each record in the VCF file. |
2017-01-24 |
https://github.com/ekg/vcflib |
|
vcflib |
1.0.14 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcffixup |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/vcflib/vcffixup |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
161 |
182 |
904 |
993 |
316 |
1009 |
2273 |
5399 |
30 |
33 |
256 |
289 |
1 |
1 |
1 |
1 |
6682 |
3434 |
1225 |
508 |
|
|
|
vcfflatten |
vcfflatten2 |
Removes multi-allelic sites by picking the most common alternate |
2017-01-24 |
https://github.com/ekg/vcflib |
|
vcflib |
1.0.14 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfflatten |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/vcflib/vcfflatten |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
24 |
29 |
169 |
190 |
71 |
209 |
381 |
935 |
14 |
16 |
315 |
363 |
0 |
0 |
0 |
0 |
1488 |
865 |
254 |
109 |
|
|
|
vcfgeno2haplo |
vcfgeno2haplo |
Convert genotype-based phased alleles into haplotype alleles |
2017-01-24 |
https://github.com/ekg/vcflib |
|
vcflib |
1.0.14 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfgeno2haplo |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/vcflib/vcfgeno2haplo |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
116 |
122 |
822 |
846 |
186 |
525 |
2410 |
3760 |
21 |
23 |
219 |
255 |
2 |
2 |
2 |
2 |
4863 |
3453 |
672 |
325 |
https://usegalaxy.org/published/workflow?id=eb4b32fcf4a9f64a |
|
|
vcfgenotypes |
vcfgenotypes |
Convert numerical representation of genotypes to allelic. |
2017-01-24 |
https://github.com/ekg/vcflib |
|
vcflib |
1.0.14 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfgenotypes |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/vcflib/vcfgenotypes |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
138 |
152 |
1335 |
1438 |
261 |
877 |
3396 |
6399 |
22 |
24 |
226 |
258 |
1 |
1 |
6 |
6 |
8101 |
4963 |
1054 |
422 |
|
|
|
vcfhethom |
vcfhethom |
Count the number of heterozygotes and alleles, compute het/hom ratio. |
2017-01-24 |
https://github.com/ekg/vcflib |
|
vcflib |
1.0.14 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfhethom |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/vcflib/vcfhethom |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
213 |
221 |
2083 |
2143 |
195 |
658 |
1857 |
3877 |
24 |
27 |
580 |
664 |
2 |
2 |
10 |
10 |
6694 |
4530 |
908 |
434 |
|
|
|
vcfleftalign |
vcfleftalign |
Left-align indels and complex variants in VCF dataset |
2017-01-24 |
https://github.com/ekg/vcflib |
|
vcflib |
1.0.14 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfleftalign |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/vcflib/vcfleftalign |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
42 |
47 |
676 |
725 |
87 |
296 |
346 |
1114 |
13 |
15 |
190 |
239 |
2 |
2 |
2 |
2 |
2080 |
1214 |
360 |
144 |
https://usegalaxy.org/published/workflow?id=2478426a119d9d93 |
|
|
vcfprimers |
vcfprimers |
Extract flanking sequences for each VCF record |
2017-01-24 |
https://github.com/ekg/vcflib |
|
vcflib |
1.0.14 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfprimers |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/vcflib/vcfprimers |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
26 |
34 |
571 |
712 |
68 |
204 |
368 |
854 |
11 |
13 |
196 |
237 |
1 |
1 |
3 |
3 |
1806 |
1138 |
252 |
106 |
|
|
|
vcfrandomsample |
vcfrandomsample |
Randomly sample sites from VCF dataset |
2017-01-24 |
https://github.com/ekg/vcflib |
|
vcflib |
1.0.14 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfrandomsample |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/vcflib/vcfrandomsample |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
15 |
17 |
156 |
171 |
28 |
78 |
137 |
355 |
6 |
6 |
190 |
213 |
0 |
0 |
0 |
0 |
739 |
483 |
101 |
49 |
|
|
|
vcfselectsamples |
vcfselectsamples |
Select samples from a VCF file |
2017-01-24 |
https://github.com/ekg/vcflib |
|
vcflib |
1.0.14 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfselectsamples |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/vcflib/vcfselectsamples |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
75 |
94 |
858 |
947 |
230 |
975 |
1221 |
6324 |
20 |
21 |
345 |
384 |
0 |
0 |
0 |
0 |
7655 |
2424 |
1090 |
325 |
https://usegalaxy.org/published/workflow?id=63e0dcf18794dbc1, https://usegalaxy.org/published/workflow?id=67e56a9919ed84f7, https://usegalaxy.org/published/workflow?id=9b4323b68f609e06, https://usegalaxy.org/published/workflow?id=ad6143e2f74e1e94, https://usegalaxy.org/published/workflow?id=db8443163482a2e0, https://usegalaxy.org/published/workflow?id=df6c398b2d4f1e99 |
|
|
vcfsort |
vcfsort |
Sort VCF dataset by coordinate |
2017-01-24 |
https://github.com/ekg/vcflib |
|
vcflib |
1.0.14 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfsort |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/vcflib/vcfsort |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
189 |
204 |
1857 |
1931 |
436 |
1334 |
13376 |
25333 |
77 |
83 |
567 |
722 |
3 |
3 |
70 |
70 |
28056 |
15870 |
1624 |
705 |
https://usegalaxy.org.au/published/workflow?id=4871f853090e8be8, https://usegalaxy.org.au/published/workflow?id=d69a765cfc82a399, https://usegalaxy.org/published/workflow?id=50206b10de958d03, https://usegalaxy.org/published/workflow?id=bb16936081b820f6, https://usegalaxy.org/published/workflow?id=fae519dcba6bfc72 |
|
|
vcfvcfintersect |
vcfvcfintersect |
Intersect two VCF datasets |
2017-01-24 |
https://github.com/ekg/vcflib |
|
vcflib |
1.0.14 |
To update |
Variant Analysis |
|
|
|
|
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfvcfintersect |
https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/vcflib/vcfvcfintersect |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
752 |
806 |
977259 |
977936 |
994 |
2200 |
65241 |
83694 |
236 |
241 |
21102 |
21158 |
15 |
15 |
1673 |
1673 |
1084461 |
1065275 |
3262 |
1997 |
https://dev.workflowhub.eu/workflows/143?version=1, https://dev.workflowhub.eu/workflows/196?version=2, https://usegalaxy.eu/published/workflow?id=0882300f7b399587, https://usegalaxy.eu/published/workflow?id=0be293debca8fb9b, https://usegalaxy.eu/published/workflow?id=2573209308aaad23, https://usegalaxy.eu/published/workflow?id=4b4bfc79205d83f1, https://usegalaxy.eu/published/workflow?id=52bdf400f97c5770, https://usegalaxy.eu/published/workflow?id=53de0e742573e588, https://usegalaxy.eu/published/workflow?id=579dd1e95e76402f, https://usegalaxy.eu/published/workflow?id=6dbac47941a804da, https://usegalaxy.eu/published/workflow?id=a6f4371ef9bc1aab, https://usegalaxy.eu/published/workflow?id=ed20bd120064bab0, https://usegalaxy.eu/published/workflow?id=ee6dc47660540ba6, https://usegalaxy.eu/published/workflow?id=fc216dfb0ec9ed41, https://usegalaxy.eu/published/workflow?id=fcf745185d6e0ea4, https://usegalaxy.fr/published/workflow?id=7d27dd394b921846, https://usegalaxy.fr/published/workflow?id=98529cff0ef36b91, https://usegalaxy.fr/published/workflow?id=d0d12c0b80c286f9, https://usegalaxy.fr/published/workflow?id=e0b225d4b2556365, https://usegalaxy.org.au/published/workflow?id=094a545d44ce28cc, https://usegalaxy.org.au/published/workflow?id=2b2ce7e1206d177d, https://usegalaxy.org.au/published/workflow?id=3223ceaa2b58d940, https://usegalaxy.org.au/published/workflow?id=3c657dd766d02f6a, https://usegalaxy.org.au/published/workflow?id=52b6fe5af4911b1a, https://usegalaxy.org.au/published/workflow?id=7fd58f5fc93f414e, https://usegalaxy.org.au/published/workflow?id=810242a3dc4f6170, https://usegalaxy.org.au/published/workflow?id=888eb87b62c4e6dd, https://usegalaxy.org.au/published/workflow?id=baa763dbdf6afb71, https://usegalaxy.org.au/published/workflow?id=bcf230e526632064, https://usegalaxy.org.au/published/workflow?id=be9213411c520096, https://usegalaxy.org.au/published/workflow?id=c1ce3f2ae7c81c3e, https://usegalaxy.org.au/published/workflow?id=c9156ca3df2b595c, https://usegalaxy.org.au/published/workflow?id=d35d05be576e8b13, https://usegalaxy.org.au/published/workflow?id=e439a0e17a90d24c, https://usegalaxy.org.au/published/workflow?id=fe5542c99cdc57ce, https://usegalaxy.org/published/workflow?id=21a047a4e068860f, https://usegalaxy.org/published/workflow?id=262ab42118016c41, https://usegalaxy.org/published/workflow?id=4cf8cc42e97b2da6, https://usegalaxy.org/published/workflow?id=6b11d738ee57f245, https://usegalaxy.org/published/workflow?id=7dde0721a382ea3e, https://usegalaxy.org/published/workflow?id=7e2651e5ed17e3db, https://usegalaxy.org/published/workflow?id=98b2ac8fc75781f8, https://usegalaxy.org/published/workflow?id=9b81d47a468d6f99, https://usegalaxy.org/published/workflow?id=9e487f763daa66c0, https://usegalaxy.org/published/workflow?id=9fc9f1db50019929, https://usegalaxy.org/published/workflow?id=a98a3ac1a41752bc, https://usegalaxy.org/published/workflow?id=b34ba9b2e4d8f050, https://usegalaxy.org/published/workflow?id=b461ac6f18e0c9cf, https://usegalaxy.org/published/workflow?id=bd355e8ce58a139e, https://usegalaxy.org/published/workflow?id=bf3ccae8d5b6ef58, https://usegalaxy.org/published/workflow?id=d196c3bde666eccb, https://usegalaxy.org/published/workflow?id=d4ea6cdd40522eb1, https://usegalaxy.org/published/workflow?id=e282f505ba9f729f, https://usegalaxy.org/published/workflow?id=e2c77aeabb8053b4, https://usegalaxy.org/published/workflow?id=f9d546aae406cf15, https://workflowhub.eu/workflows/110?version=11 |
|
|
vegan |
vegan_diversity, vegan_fisher_alpha, vegan_rarefaction |
an R package fo community ecologist |
2015-08-27 |
https://cran.r-project.org/package=vegan |
2.4-3 |
r-vegan |
2.3_4 |
To update |
Metagenomics |
Standardisation and normalisation, Analysis |
Standardisation and normalisation, Analysis |
Ecology, Phylogenetics, Environmental science |
Ecology, Phylogenetics, Environmental science |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/vegan/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/vegan |
vegan |
vegan |
Ordination methods, diversity analysis and other functions for community and vegetation ecologists |
|
3 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
3 |
0 |
89 |
95 |
2164 |
2328 |
170 |
311 |
3651 |
5713 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8041 |
5815 |
406 |
259 |
|
|
|
velocyto |
velocyto_cli |
Velocyto is a library for the analysis of RNA velocity. |
2021-04-30 |
http://velocyto.org/ |
0.17.17 |
velocyto.py |
0.17.17 |
Up-to-date |
Transcriptomics, Single Cell |
RNA-Seq analysis, Splicing analysis |
RNA-Seq analysis, Splicing analysis |
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/velocyto |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/velocyto |
velocyto |
Velocyto |
Estimating RNA velocity in single cell RNA sequencing datasets |
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
5 |
5 |
74 |
74 |
9 |
9 |
65 |
65 |
1 |
1 |
96 |
96 |
0 |
0 |
0 |
0 |
235 |
235 |
15 |
15 |
https://usegalaxy.eu/published/workflow?id=c5841e0458a4ebf7, https://usegalaxy.eu/published/workflow?id=c58bb47e04157ee6, https://usegalaxy.org.au/published/workflow?id=1e5a77d9e9630115, https://usegalaxy.org.au/published/workflow?id=77e0ca6492f40c9c, https://usegalaxy.org/published/workflow?id=29d51c37d66deeeb, https://usegalaxy.org/published/workflow?id=6592430b80345167 |
|
|
velvet |
velvetg, velveth |
de novo genomic assembler specially designed for short read sequencing technologies |
2020-06-09 |
https://www.ebi.ac.uk/~zerbino/velvet/ |
|
velvet |
1.2.10 |
To update |
Assembly |
Formatting, De-novo assembly |
Formatting, De-novo assembly |
Sequence assembly |
Sequence assembly |
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/velvet |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/velvet |
velvet |
Velvet |
A de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454 or SOLiD. |
|
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
0 |
0 |
2219 |
2480 |
25341 |
29448 |
4720 |
4720 |
53931 |
53931 |
1885 |
1923 |
29765 |
29920 |
72 |
72 |
628 |
628 |
113927 |
109665 |
9195 |
8896 |
https://dev.workflowhub.eu/workflows/1003?version=1, https://dev.workflowhub.eu/workflows/1192?version=2, https://usegalaxy.eu/published/workflow?id=01dc0619e050dc91, https://usegalaxy.eu/published/workflow?id=56edd22d14392691, https://usegalaxy.eu/published/workflow?id=6d87481be47902e1, https://usegalaxy.eu/published/workflow?id=842e0ea7b1eb56af, https://usegalaxy.eu/published/workflow?id=b7c2440621968526, https://usegalaxy.eu/published/workflow?id=ef83f7fd2176a244, https://usegalaxy.org.au/published/workflow?id=30430b75d05f54eb, https://usegalaxy.org.au/published/workflow?id=533dbb3242ee4255, https://usegalaxy.org.au/published/workflow?id=7fa13ccbf044edc5, https://usegalaxy.org.au/published/workflow?id=83e3ceceb1a92493, https://usegalaxy.org.au/published/workflow?id=874492eb776ba813, https://usegalaxy.org.au/published/workflow?id=8b6739a000780d99, https://usegalaxy.org.au/published/workflow?id=94c7fdcbbc7b428a, https://usegalaxy.org.au/published/workflow?id=9b75924c483b5f6b, https://usegalaxy.org.au/published/workflow?id=aee5b5645c51cac3, https://usegalaxy.org.au/published/workflow?id=dccc8fb49d61ac33, https://usegalaxy.org.au/published/workflow?id=ee7a1615f187391d, https://usegalaxy.org.au/published/workflow?id=f25a05070bf97ded, https://usegalaxy.org.au/published/workflow?id=fb0986a952c35e0a, https://usegalaxy.org/published/workflow?id=4e1ae78405034ad3, https://usegalaxy.org/published/workflow?id=51c485af11d90700, https://usegalaxy.org/published/workflow?id=7a33bc2d0970b502, https://usegalaxy.org/published/workflow?id=c30f6ca171896908, https://usegalaxy.org/published/workflow?id=e745c45651d829b8, https://usegalaxy.org/published/workflow?id=f6bd33dedc7c6c12, https://usegalaxy.org/published/workflow?id=f926e70bee242785, https://workflowhub.eu/workflows/1622?version=1 |
assembly/general-introduction |
|
velvetoptimiser |
velvetoptimiser |
Automatically optimize Velvet assemblies |
2017-12-19 |
|
2.2.6+galaxy2 |
velvet |
1.2.10 |
To update |
Assembly |
Optimisation and refinement, Sequence assembly |
Optimisation and refinement, Sequence assembly |
Genomics, Sequence assembly |
Genomics, Sequence assembly |
simon-gladman |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/velvetoptimiser |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/velvet_optimiser |
velvetoptimiser |
VelvetOptimiser |
This tool is designed to run as a wrapper script for the Velvet assembler (Daniel Zerbino, EBI UK) and to assist with optimising the assembly. |
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
937 |
1070 |
4635 |
5624 |
2338 |
2350 |
10295 |
10321 |
990 |
1423 |
3264 |
5686 |
0 |
0 |
0 |
0 |
21631 |
18194 |
4843 |
4265 |
https://dev.workflowhub.eu/workflows/1124?version=1, https://usegalaxy.eu/published/workflow?id=98bfad0c684011e9, https://usegalaxy.eu/published/workflow?id=ef83f7fd2176a244, https://usegalaxy.org.au/published/workflow?id=8abcfe166f1a6cd8, https://usegalaxy.org.au/published/workflow?id=8d47811c6154d347, https://usegalaxy.org.au/published/workflow?id=fa76b66785ce38b8, https://workflowhub.eu/workflows/1626?version=1 |
assembly/debruijn-graph-assembly |
|
verkko |
verkko |
Telomere-to-telomere assembly pipeline |
2023-01-24 |
https://github.com/marbl/verkko |
1.3.1 |
verkko |
2.2.1 |
To update |
Assembly |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/verkko |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/verkko |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
33 |
33 |
69 |
69 |
0 |
0 |
0 |
0 |
8 |
8 |
61 |
61 |
0 |
0 |
0 |
0 |
130 |
130 |
41 |
41 |
|
|
|
vg |
vg_convert, vg_deconstruct, vg_view |
Variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods |
2020-04-08 |
https://github.com/vgteam/vg |
1.23.0 |
vg |
1.67.0 |
To update |
Sequence Analysis, Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/vg |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/vg |
|
|
|
|
0 |
0 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
3 |
0 |
14 |
14 |
479 |
479 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
479 |
479 |
14 |
14 |
https://usegalaxy.eu/published/workflow?id=9ba580ba8b01db40 |
|
|
viralverify |
viralverify |
Contigs prediction as viral, chromosomal, plasmidic or uncertain. |
2025-07-04 |
https://github.com/ablab/viralVerify |
1.1 |
viralverify |
1.1 |
Up-to-date |
Sequence Analysis, Metagenomics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/viralverify |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/viralverify |
|
|
|
|
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
virannot |
virannot_blast2tsv, virannot_otu, virAnnot_rps2tsv |
virAnnot wrappers |
2025-08-04 |
https://github.com/marieBvr/virAnnot |
1.2.0 |
biopython |
1.70 |
To update |
Metagenomics |
Sequence annotation, Sequence clustering, Sequence cluster visualisation |
Sequence annotation, Sequence clustering, Sequence cluster visualisation |
Metagenomics, Virology, Microbial ecology |
Metagenomics, Virology, Microbial ecology |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/virannot |
virannot |
virAnnot |
VirAnnot was build to ease the assembly, blast search, taxonomic annotation and OTUs assignation of viral metagenomic HTS data. It is used in Virologie team of UMR1332 BFP laboratory at INRAE. VirAnnot also takes part of the Euphresco project "Plant Health Bioinformatics Network". See more.It is designed to identify viruses in plant metagenomic data but it can be used to assemble and annotate any sequences with the NCBI taxonomy. |
|
0 |
0 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
12 |
271 |
271 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
14 |
14 |
285 |
285 |
14 |
14 |
https://usegalaxy.eu/published/workflow?id=17f73aba442315e6, https://usegalaxy.eu/published/workflow?id=86465932556bc96c |
|
|
virheat |
virheat |
generates a heatmap of allele frequencies from vcf files |
2024-05-15 |
https://github.com/jonas-fuchs/virHEAT |
0.7.1 |
virheat |
0.7.6 |
To update |
Visualization, Variant Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/virheat |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/virheat |
virheat |
virHEAT |
VirHEAT tool generates multi-sample variant-frequency plots from SnpEff-annotated viral variant lists. The tool provides a condensed look at variant frequencies after mapping raw reads to a viral/bacterial reference genome and compares multiple vcf files at the same time. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
15 |
15 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
15 |
15 |
4 |
4 |
|
|
|
virhunter |
virhunter |
Deep Learning method for novel virus detection in sequencing data |
2022-09-13 |
https://github.com/cbib/virhunter |
1.0.0 |
numpy |
|
To update |
Machine Learning |
Sequence classification |
Sequence classification |
Virology |
Virology |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/virhunter |
virhunter |
VirHunter |
VirHunter is a deep learning method that uses Convolutional Neural Networks (CNNs) and a Random Forest Classifier to identify viruses in sequencing datasets. More precisely, VirHunter classifies previously assembled contigs as viral, host, and bacterial (contamination). |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
97 |
97 |
760 |
760 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
760 |
760 |
97 |
97 |
https://usegalaxy.eu/published/workflow?id=87231a6a7938cb95 |
|
|
virulign |
virulign |
A tool for codon-correct pairwise alignments, with an augmented functionality to annotate the alignment according the positions of the proteins. |
2025-08-14 |
https://github.com/rega-cev/virulign |
1.1.1 |
virulign |
1.1.1 |
Up-to-date |
RNA, Sequence Analysis, Fasta Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/virulign/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/virulign |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
volcanoplot |
volcanoplot |
Tool to create a Volcano Plot |
2018-10-01 |
https://ggplot2.tidyverse.org/ |
3.5.2 |
r-ggplot2 |
2.2.1 |
To update |
Visualization, Transcriptomics, Statistics |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/volcanoplot |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/volcanoplot |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
4014 |
4259 |
36539 |
40056 |
6282 |
6282 |
61543 |
61543 |
941 |
947 |
7726 |
7854 |
193 |
193 |
1260 |
1260 |
110713 |
107068 |
11681 |
11430 |
https://dev.workflowhub.eu/workflows/1335?version=2, https://dev.workflowhub.eu/workflows/1395?version=1, https://usegalaxy.eu/published/workflow?id=04df470a38b10e94, https://usegalaxy.eu/published/workflow?id=17ad465d9515cd25, https://usegalaxy.eu/published/workflow?id=20ada53472782c9b, https://usegalaxy.eu/published/workflow?id=350d7e6976e15d30, https://usegalaxy.eu/published/workflow?id=3ac10b9887fd0fb2, https://usegalaxy.eu/published/workflow?id=466bdd8ba7b67264, https://usegalaxy.eu/published/workflow?id=4ddf2ec5c460d622, https://usegalaxy.eu/published/workflow?id=68e8042f11d5a3fd, https://usegalaxy.eu/published/workflow?id=7136ce9f18c74853, https://usegalaxy.eu/published/workflow?id=81f1927bfe3ffea1, https://usegalaxy.eu/published/workflow?id=82ef590b5821805d, https://usegalaxy.eu/published/workflow?id=8b1e2fe9f4a07de0, https://usegalaxy.eu/published/workflow?id=95c4d5549e820d88, https://usegalaxy.eu/published/workflow?id=a9469155eee12ff1, https://usegalaxy.eu/published/workflow?id=bc79a9f797334b01, https://usegalaxy.eu/published/workflow?id=c3a11e1ac1aa8383, https://usegalaxy.eu/published/workflow?id=c7b9fb6872444809, https://usegalaxy.eu/published/workflow?id=d1b3b62e7f91e217, https://usegalaxy.eu/published/workflow?id=d41b52a15ba56f54, https://usegalaxy.eu/published/workflow?id=e04be1ab5a16eb9f, https://usegalaxy.eu/published/workflow?id=e7e26967cf6cb8d8, https://usegalaxy.eu/published/workflow?id=f58526da1fd68108, https://usegalaxy.eu/published/workflow?id=fd156028b09d213a, https://usegalaxy.org.au/published/workflow?id=04ab43fb3e7840ef, https://usegalaxy.org.au/published/workflow?id=28705b86e0595ded, https://usegalaxy.org.au/published/workflow?id=5fe66b29dcfb22ab, https://usegalaxy.org.au/published/workflow?id=897e9d7432d231e9, https://usegalaxy.org.au/published/workflow?id=8eab5e2b2c683076, https://usegalaxy.org.au/published/workflow?id=9988bc2402f32dc1, https://usegalaxy.org.au/published/workflow?id=a8d9a16eea69b812, https://usegalaxy.org.au/published/workflow?id=a9e59d38c6c710bc, https://usegalaxy.org/published/workflow?id=0930f955bdac93e8, https://usegalaxy.org/published/workflow?id=13a3954b8894e1b1, https://usegalaxy.org/published/workflow?id=25cdc47baba556c5, https://usegalaxy.org/published/workflow?id=40a65b5bc1dcc0b4, https://usegalaxy.org/published/workflow?id=420a332da24fb9e9, https://usegalaxy.org/published/workflow?id=4c840284d2984fa0, https://usegalaxy.org/published/workflow?id=5944c5effd56b0d6, https://usegalaxy.org/published/workflow?id=667493d318b86b7d, https://usegalaxy.org/published/workflow?id=68832752b883c226, https://usegalaxy.org/published/workflow?id=7497bfdd2085b6e0, https://usegalaxy.org/published/workflow?id=b0e19e7315b64c87, https://usegalaxy.org/published/workflow?id=e40c2e7f6b73fb11, https://workflowhub.eu/workflows/1201?version=4, https://workflowhub.eu/workflows/1207?version=2, https://workflowhub.eu/workflows/1556?version=1, https://workflowhub.eu/workflows/1708?version=1, https://workflowhub.eu/workflows/1709?version=1 |
genome-annotation/crispr-screen, single-cell/pseudobulk-analysis, transcriptomics/rna-seq-analysis-clustering-viz, transcriptomics/rna-seq-viz-with-volcanoplot, transcriptomics/rna-seq-viz-with-volcanoplot-r |
|
vsearch |
vsearch_alignment, vsearch_chimera_detection, vsearch_clustering, vsearch_dereplication, vsearch_masking, vsearch_search, vsearch_shuffling, vsearch_sorting |
VSEARCH including searching, clustering, chimera detection, dereplication, sorting, masking and shuffling of sequences. |
2014-11-30 |
https://github.com/torognes/vsearch |
2.8.3 |
vsearch |
2.30.0 |
To update |
Sequence Analysis |
DNA mapping, Chimera detection |
DNA mapping, Chimera detection |
Metagenomics, Sequence analysis |
Metagenomics, Sequence analysis |
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsearch |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/vsearch |
vsearch |
VSEARCH |
High-throughput search and clustering sequence analysis tool. It supports de novo and reference based chimera detection, clustering, full-length and prefix dereplication, reverse complementation, masking, all-vs-all pairwise global alignment, exact and global alignment searching, shuffling, subsampling and sorting. It also supports FASTQ file analysis, filtering and conversion. |
|
8 |
8 |
8 |
8 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8 |
8 |
8 |
0 |
0 |
0 |
0 |
0 |
8 |
0 |
0 |
0 |
0 |
8 |
8 |
8 |
0 |
172 |
194 |
11607 |
12884 |
308 |
584 |
13254 |
56821 |
74 |
82 |
5716 |
6352 |
8 |
8 |
31 |
31 |
76088 |
30608 |
868 |
562 |
https://usegalaxy.eu/published/workflow?id=401746888e8b3aa8, https://usegalaxy.eu/published/workflow?id=9382f9bbbdddb5ad, https://usegalaxy.eu/published/workflow?id=9cbba5de2cbeeb0f, https://usegalaxy.eu/published/workflow?id=a8417c63e9e22afb, https://usegalaxy.eu/published/workflow?id=c3aa516e78ca4191, https://usegalaxy.org.au/published/workflow?id=14e80b7f9f68ec2a, https://usegalaxy.org.au/published/workflow?id=869440d35a618836, https://workflowhub.eu/workflows/232?version=1, https://workflowhub.eu/workflows/233?version=1 |
|
|
vsnp |
vsnp_add_zero_coverage, vsnp_build_tables, vsnp_determine_ref_from_data, vsnp_get_snps, vsnp_statistics |
The vSNP tools are critical components of several workflows that validate SNPs and produce annotatedSNP tables and corresponding phylogenetic trees. |
2020-04-26 |
https://github.com/USDA-VS/vSNP |
3.0.6 |
pysam |
0.23.3 |
To update |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsnp |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/vsnp |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
weblogo3 |
rgweblogo3 |
Sequence Logo generator for fasta |
2017-11-17 |
|
3.5.0 |
weblogo |
3.7.9 |
To update |
Graphics |
Sequence cluster visualisation, Sequence visualisation, Sequence motif recognition |
Sequence cluster visualisation, Sequence visualisation, Sequence motif recognition |
Nucleic acid sites, features and motifs, Sequence analysis |
Nucleic acid sites, features and motifs, Sequence analysis |
devteam |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/weblogo3 |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/weblogo3 |
weblogo |
WebLogo |
Web-based application designed to make generate sequence logos. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
219 |
243 |
2807 |
2923 |
1346 |
3687 |
9506 |
30859 |
50 |
61 |
1261 |
1353 |
10 |
10 |
32 |
32 |
35167 |
13606 |
4001 |
1625 |
https://usegalaxy.eu/published/workflow?id=974cc681d07ec788, https://usegalaxy.org/published/workflow?id=042758b8a8c5ac80, https://usegalaxy.org/published/workflow?id=18e7a954c0b6e4bc, https://usegalaxy.org/published/workflow?id=b2fb90873471f4e7 |
|
|
windowmasker |
windowmasker_mkcounts, windowmasker_ustat |
Identify repetitive regions using WindowMasker |
2023-12-14 |
https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/lxr/source/src/app/winmasker/ |
1.0 |
blast |
2.17.0 |
To update |
Sequence Analysis |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/windowmasker/ |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/windowmasker |
|
|
|
|
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
17 |
17 |
812 |
812 |
9 |
9 |
558 |
558 |
3 |
3 |
532 |
532 |
0 |
0 |
0 |
0 |
1902 |
1902 |
29 |
29 |
https://usegalaxy.eu/published/workflow?id=1ce406de61de8492, https://usegalaxy.eu/published/workflow?id=2880a32a52d27743, https://usegalaxy.eu/published/workflow?id=2e93613c688ea52e, https://usegalaxy.eu/published/workflow?id=309969a261189b5f, https://usegalaxy.eu/published/workflow?id=38f12705279b5dfa, https://usegalaxy.eu/published/workflow?id=3cf3dd9727b7ac92, https://usegalaxy.eu/published/workflow?id=5f29105e842716db, https://usegalaxy.eu/published/workflow?id=aada0111f835ce49, https://usegalaxy.eu/published/workflow?id=cc2bc81352d2e2cd, https://usegalaxy.eu/published/workflow?id=efb58bba65393347 |
|
|
winnowmap |
winnowmap |
A long-read mapping tool optimized for mapping ONT and PacBio reads to repetitive reference sequences. |
2021-04-29 |
https://github.com/marbl/Winnowmap |
2.03 |
winnowmap |
2.03 |
Up-to-date |
Next Gen Mappers |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/winnowmap |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/winnowmap |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
49 |
49 |
289 |
289 |
16 |
16 |
84 |
84 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
373 |
373 |
65 |
65 |
https://usegalaxy.eu/published/workflow?id=2cd5670f075704ab, https://usegalaxy.eu/published/workflow?id=e522be58f0bac656 |
|
|
xpath |
xpath |
XPath XML querying tool |
2015-04-14 |
http://search.cpan.org/dist/XML-XPath/ |
|
perl-xml-xpath |
1.47 |
To update |
Text Manipulation |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/xpath |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
8 |
9 |
99 |
236 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
237 |
99 |
10 |
8 |
https://usegalaxy.eu/published/workflow?id=1f3f6757de60d3cf |
|
|
yahs |
yahs |
Yet Another Hi-C scaffolding tool |
2022-06-28 |
https://github.com/c-zhou/yahs |
1.2a.2 |
yahs |
1.2.2 |
To update |
Assembly |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/yahs |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/yahs |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
210 |
210 |
751 |
751 |
74 |
74 |
399 |
399 |
26 |
26 |
779 |
779 |
0 |
0 |
0 |
0 |
1929 |
1929 |
310 |
310 |
https://usegalaxy.eu/published/workflow?id=069d99391a69baf4, https://usegalaxy.eu/published/workflow?id=0c3ce9feb83f7920, https://usegalaxy.eu/published/workflow?id=0cf3c2114ab65858, https://usegalaxy.eu/published/workflow?id=3010ecad1a342331, https://usegalaxy.eu/published/workflow?id=31f8c7c46207432f, https://usegalaxy.eu/published/workflow?id=3b57fc81001667b5, https://usegalaxy.eu/published/workflow?id=44c92c04f1d14631, https://usegalaxy.eu/published/workflow?id=4949751217c0e211, https://usegalaxy.eu/published/workflow?id=5395e76fa828c343, https://usegalaxy.eu/published/workflow?id=652433160b04b232, https://usegalaxy.eu/published/workflow?id=792b24fc23bd3071, https://usegalaxy.eu/published/workflow?id=7b4a9aebb09b51ca, https://usegalaxy.eu/published/workflow?id=7e383fe34031a9d0, https://usegalaxy.eu/published/workflow?id=7e68cf8a67efa8e9, https://usegalaxy.eu/published/workflow?id=84236d781f7dd2ad, https://usegalaxy.eu/published/workflow?id=a2daeb488bee0152, https://usegalaxy.eu/published/workflow?id=a37d1e0db16cfb67, https://usegalaxy.eu/published/workflow?id=a53f78aa6866b811, https://usegalaxy.eu/published/workflow?id=b287bb779cf686ef, https://usegalaxy.eu/published/workflow?id=bc8ccd13a07bd9ec, https://usegalaxy.eu/published/workflow?id=c8f94a2e838fc0f1, https://usegalaxy.eu/published/workflow?id=cab2aa791a814d55, https://usegalaxy.eu/published/workflow?id=d649ec485c4b3994, https://usegalaxy.eu/published/workflow?id=f63127675a07e00a, https://usegalaxy.eu/published/workflow?id=feeb1fa358ccf328, https://usegalaxy.org.au/published/workflow?id=0aa316f8c6cff444, https://usegalaxy.org.au/published/workflow?id=0dbb85f727302a72, https://usegalaxy.org.au/published/workflow?id=29f0c07c8a24b542, https://usegalaxy.org.au/published/workflow?id=3b6e9f03b088bf01, https://usegalaxy.org.au/published/workflow?id=455e68f185fec41b, https://usegalaxy.org.au/published/workflow?id=466809eb3392f7fb, https://usegalaxy.org.au/published/workflow?id=4ea1049371de111c, https://usegalaxy.org.au/published/workflow?id=6c1c11a81a2ab1b8, https://usegalaxy.org.au/published/workflow?id=6de8899c40a90b98, https://usegalaxy.org.au/published/workflow?id=6ec5728eec9c26d7, https://usegalaxy.org.au/published/workflow?id=7028436ef03171cc, https://usegalaxy.org.au/published/workflow?id=77b2fcf8c805ad5d, https://usegalaxy.org.au/published/workflow?id=7a97e8ccc332c1e8, https://usegalaxy.org.au/published/workflow?id=868775ef66d174a5, https://usegalaxy.org.au/published/workflow?id=86eb0ea9dc230f04, https://usegalaxy.org.au/published/workflow?id=ae2a397837b232b1, https://usegalaxy.org.au/published/workflow?id=ae6a03240680712a, https://usegalaxy.org.au/published/workflow?id=b53f82aaf32fbaa9, https://usegalaxy.org.au/published/workflow?id=b9e89401313a0cca, https://usegalaxy.org.au/published/workflow?id=be35847680078c90, https://usegalaxy.org.au/published/workflow?id=cac0b8a09d59044b, https://usegalaxy.org.au/published/workflow?id=ea98be0f99aaceb9, https://usegalaxy.org.au/published/workflow?id=f53d8ade897b3f46, https://usegalaxy.org.au/published/workflow?id=fdec6e2fcd5e2cf5, https://usegalaxy.org/published/workflow?id=155839aeb6340f54, https://usegalaxy.org/published/workflow?id=1ea88ca80a7f0038, https://usegalaxy.org/published/workflow?id=23eeee48217654d4, https://usegalaxy.org/published/workflow?id=28dbbfb3d480f4b1, https://usegalaxy.org/published/workflow?id=28ddea356ae57da1, https://usegalaxy.org/published/workflow?id=325783f21bc5fef6, https://usegalaxy.org/published/workflow?id=349f1bcdbc84045f, https://usegalaxy.org/published/workflow?id=3d805d7e0f34c727, https://usegalaxy.org/published/workflow?id=3db51822f04f4ff7, https://usegalaxy.org/published/workflow?id=49a07807fcea8158, https://usegalaxy.org/published/workflow?id=6341c384ceaf47ed, https://usegalaxy.org/published/workflow?id=74049914e4a6c791, https://usegalaxy.org/published/workflow?id=7b8ee08ba291d231, https://usegalaxy.org/published/workflow?id=88327cb2e0fe3c25, https://usegalaxy.org/published/workflow?id=903e35b62946ed76, https://usegalaxy.org/published/workflow?id=91a4daecbb97d03e, https://usegalaxy.org/published/workflow?id=9f4c4038d1c519e2, https://usegalaxy.org/published/workflow?id=a4a6d6846c1692f9, https://usegalaxy.org/published/workflow?id=afa89bb0e8966753, https://usegalaxy.org/published/workflow?id=f09033420c6267ab, https://usegalaxy.org/published/workflow?id=fa36d9b50e956917, https://usegalaxy.org/published/workflow?id=fb98ef955b3dbd4b, https://workflowhub.eu/workflows/1054?version=1, https://workflowhub.eu/workflows/1164?version=2, https://workflowhub.eu/workflows/608?version=1, https://workflowhub.eu/workflows/625?version=23, https://workflowhub.eu/workflows/702?version=1 |
assembly/vgp_genome_assembly |
|
zerone |
zerone |
ChIP-seq discretization and quality control |
2018-09-05 |
https://github.com/nanakiksc/zerone |
1.0 |
zerone |
1.0 |
Up-to-date |
ChIP-seq |
|
|
|
|
iuc |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/zerone |
https://github.com/galaxyproject/tools-iuc/tree/main/tools/zerone |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
8 |
12 |
63 |
96 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
96 |
63 |
12 |
8 |
|
|
|
CRSConverter |
crsconverter |
Tools to transforms geographical vector data to a specified coordinate reference system. |
2025-05-20 |
https://github.com/Morphy427/phylodiversity_workflow/CRSConverter |
1.1 |
r-sf |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/Phylodiversity_workflow |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/CRSConverter |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
https://usegalaxy.eu/published/workflow?id=89525918b2a32023 |
ecology/phylodiversity_workflow |
|
EstimEndem |
estimate_endem |
Tools to estimates the endemism of each cell in a spatial grid. |
2025-05-20 |
https://github.com/Morphy427/phylodiversity_workflow/EstimEndem |
0.1.1+galaxy0 |
r-phyloregion |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/Phylodiversity_workflow |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/EstimEndem |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
https://usegalaxy.eu/published/workflow?id=89525918b2a32023 |
ecology/phylodiversity_workflow |
|
Geometric means (Dead wood) |
Map_shp, Mean_geom, bar_plot |
Tools to compute The evolution of the total volume of very large trees, standing dead wood and dead wood on the ground on an area and the rate of devolution of the volume of wood favorable to biodiversity by large ecological regions (France). |
2023-11-10 |
https://github.com/PaulineSGN/Galaxy_tool_moyenne_geom |
0.1.0+galaxy0 |
r-base |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/Geom_mean_workflow |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/Geom_mean_workflow |
|
|
|
|
0 |
0 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
27 |
27 |
72 |
72 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
17 |
17 |
89 |
89 |
28 |
28 |
|
|
|
MALDIquant |
maldi_quant_peak_detection, maldi_quant_preprocessing |
MALDIquant provides a complete analysis pipeline for MALDI-TOF and other 2D mass spectrometry data. |
2018-08-22 |
http://strimmerlab.org/software/maldiquant/ |
1.22.0 |
r-base |
|
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maldiquant |
|
|
|
|
0 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
32 |
36 |
1227 |
3827 |
0 |
0 |
0 |
0 |
21 |
21 |
1213 |
1213 |
0 |
0 |
0 |
0 |
5040 |
2440 |
57 |
53 |
https://dev.workflowhub.eu/workflows/1123?version=1, https://usegalaxy.eu/published/workflow?id=7ee6976f69131683, https://usegalaxy.eu/published/workflow?id=a5ca8b9807ed3f73, https://usegalaxy.org.au/published/workflow?id=3678781bf7619a89, https://workflowhub.eu/workflows/1587?version=1 |
metabolomics/msi-finding-nglycans |
|
MFAssignR |
mfassignr_findRecalSeries, mfassignr_histnoise, mfassignr_isofiltr, mfassignr_kmdnoise, mfassignr_mfassign, mfassignr_mfassignCHO, mfassignr_recal, mfassignr_recallist, mfassignr_snplot |
The MFAssignR package was designed for multi-element molecular formula (MF) assignment of ultrahigh resolution mass spectrometry measurements |
2024-08-02 |
https://github.com/RECETOX/MFAssignR |
1.1.2 |
r-mfassignr |
1.1.2 |
Up-to-date |
Metabolomics |
Visualisation |
Visualisation |
Proteomics experiment, Molecular interactions, pathways and networks, Workflows |
Proteomics experiment, Molecular interactions, pathways and networks, Workflows |
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr |
https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr |
mfassignr |
MFAssignR |
Molecular formula assignment software for ultrahigh resolution mass spectrometry analysis of environmental complex mixtures.Ultrahigh resolution mass spectrometry is widely used for nontargeted analysis of complex environmental and biological mixtures, such as dissolved organic matter, due to its unparalleled ability to provide accurate mass measurements. |
|
9 |
0 |
9 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
50 |
50 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
50 |
50 |
3 |
3 |
https://workflowhub.eu/workflows/1351?version=1, https://workflowhub.eu/workflows/1591?version=1 |
metabolomics/mfassignr |
|
Make data paper sketches from EML |
data_paper_from_EML |
This tool derived from the R Shiny App MetaShRIMPS <https://github.com/TanguyGen/metaCure> is made to produce draft of data paper from Ecological Metadata Language (EML) based metadata documents. |
2024-10-15 |
https://github.com/TanguyGen/emldown |
0.1.0+galaxy0 |
r-base |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/main/tools-ecology/tools/make_data_paper_sketches |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/make_data_paper_sketches |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
24 |
24 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
24 |
24 |
3 |
3 |
|
|
|
PylOccuMatcher |
phylogenetic_occupancy_matcher |
Tools to matches phylogenetic data with occupancy data. |
2025-05-20 |
https://github.com/Morphy427/phylodiversity_workflow/PhylOccuMatcher |
1.0 |
r-phyloregion |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/Phylodiversity_workflow |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/PhylOccuMatcher |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
https://usegalaxy.eu/published/workflow?id=89525918b2a32023 |
ecology/phylodiversity_workflow |
|
PyloIndex |
phylo_index |
Tools to computes the phylodiversity index. |
2025-05-20 |
https://github.com/Morphy427/phylodiversity_workflow/PyloIndex |
1.0 |
r-phyloregion |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/Phylodiversity_workflow |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/PhyloIndex |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
https://usegalaxy.eu/published/workflow?id=89525918b2a32023 |
ecology/phylodiversity_workflow |
|
QCxMS |
qcxms_getres, qcxms_neutral_run, qcxms_production_run |
QCxMS is a quantum chemical (QC) based program that enables users to calculate mass spectra (MS) using Born-Oppenheimer Molecular Dynamics (MD). |
2023-08-24 |
https://github.com/grimme-lab/QCxMS |
5.2.1 |
|
|
To update |
Computational chemistry, Molecular Dynamics |
|
|
|
|
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/qcxms |
https://github.com/RECETOX/galaxytools/tree/master/tools/qcxms |
|
|
|
|
3 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8 |
8 |
35682 |
35682 |
0 |
0 |
0 |
0 |
2 |
2 |
678 |
678 |
0 |
0 |
0 |
0 |
36360 |
36360 |
10 |
10 |
https://dev.workflowhub.eu/workflows/1367?version=1, https://usegalaxy.eu/published/workflow?id=4e9a2e12467bc02e, https://usegalaxy.eu/published/workflow?id=5465916d9b51f411, https://workflowhub.eu/workflows/1350?version=1, https://workflowhub.eu/workflows/1597?version=1, https://workflowhub.eu/workflows/897?version=3 |
metabolomics/qcxms-predictions |
|
SCCAF |
run_sccaf, sccaf_asses, sccaf_asses_merger, sccaf_regress_out |
SCCAF: Single Cell Clustering Assessment Framework. |
2019-10-20 |
https://github.com/sccaf/sccaf |
0.0.9 |
sccaf |
0.0.10 |
To update |
Transcriptomics |
|
|
|
|
ebi-gxa |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/sccaf |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/tertiary-analysis/sccaf |
|
|
|
|
4 |
3 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8 |
8 |
103 |
110 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
111 |
104 |
9 |
9 |
|
|
|
WormsMeasurements |
WormsMeasurements |
This tool uses WoRMS (World Register of Marine Species) to add measurement values to a dataset based on scientific names. |
2025-05-07 |
https://github.com/jeanlecras/tools-ecology |
0.1.2 |
r-base |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/jeanlecras/tools-ecology/tree/master/tools/WormsMeasurements |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/WormsMeasurements |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
https://usegalaxy.eu/published/workflow?id=749bb05ec8674bec |
ecology/ecoregiolifetraits |
|
ab1fastq |
ab1_fastq_converter |
Tool to convert ab1 files into FASTQ files |
2021-10-08 |
|
1.20.0 |
bioconductor-sangerseqr |
1.42.0 |
To update |
Convert Formats |
|
|
|
|
ecology |
https://github.com/ColineRoyaux/Galaxy_tool_projects/tree/main/ab1_fastq |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/ab1_fastq |
|
|
|
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
346 |
346 |
55863 |
55863 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
16 |
16 |
6494 |
6494 |
62357 |
62357 |
362 |
362 |
https://dev.workflowhub.eu/workflows/1287?version=2, https://dev.workflowhub.eu/workflows/1292?version=2, https://usegalaxy.eu/published/workflow?id=52cb9bacc26b013e, https://usegalaxy.eu/published/workflow?id=c7f34c67c9054234, https://usegalaxy.fr/published/workflow?id=41264142d3c00016, https://usegalaxy.fr/published/workflow?id=8b1678200a1d157a, https://workflowhub.eu/workflows/1630?version=1, https://workflowhub.eu/workflows/1635?version=1 |
ecology/ENA_Biodiv_submission, sequence-analysis/Manage_AB1_Sanger |
|
ambertools |
ambertools_acpype, acpype_Amber2Gromacs, ambertools_antechamber, mmpbsa_mmgbsa, ambertools_parmchk2, parmconv, tleap |
Ambertools is a set of packages for preparing systems for molecular dynamics (MD) simulations and analyzing trajectories. |
2019-06-13 |
http://ambermd.org/AmberTools.php |
21.10 |
ambertools |
|
To update |
Molecular Dynamics, Computational chemistry |
|
|
|
|
chemteam |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/buildtools/ambertools |
|
|
|
|
7 |
2 |
7 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
7 |
5 |
0 |
404 |
405 |
42750 |
42972 |
129 |
129 |
1519 |
1519 |
99 |
99 |
1991 |
1991 |
0 |
0 |
0 |
0 |
46482 |
46260 |
633 |
632 |
https://dev.workflowhub.eu/workflows/1134?version=1, https://usegalaxy.eu/published/workflow?id=07e1478df88a17cc, https://usegalaxy.eu/published/workflow?id=2a1b21d39ebb6e49, https://usegalaxy.eu/published/workflow?id=3729015f676693c8, https://usegalaxy.eu/published/workflow?id=3c6ff60d1d3ceb3d, https://usegalaxy.eu/published/workflow?id=5d793801998146bc, https://usegalaxy.eu/published/workflow?id=843c10c447496280, https://usegalaxy.eu/published/workflow?id=84c95f31896213fd, https://usegalaxy.eu/published/workflow?id=abd1cb3457338eb5, https://usegalaxy.eu/published/workflow?id=adc6d049e9283789, https://usegalaxy.eu/published/workflow?id=bf99d06567288766, https://usegalaxy.eu/published/workflow?id=c39a79bb45b2566e, https://usegalaxy.eu/published/workflow?id=d4d8e907e26c8587, https://usegalaxy.eu/published/workflow?id=e0dddc2579c3614e, https://usegalaxy.eu/published/workflow?id=e73beff62f35d677, https://usegalaxy.org.au/published/workflow?id=28cf646b95e4d3ab, https://usegalaxy.org/published/workflow?id=00a4dbc9329c638b, https://usegalaxy.org/published/workflow?id=0fb89e9c397c8938, https://usegalaxy.org/published/workflow?id=183254b3565bcb04, https://usegalaxy.org/published/workflow?id=3c1e2bbb1a77cc30, https://usegalaxy.org/published/workflow?id=442a2868873e7f77, https://usegalaxy.org/published/workflow?id=a638e12411586555, https://usegalaxy.org/published/workflow?id=aaec757e04605d3a, https://usegalaxy.org/published/workflow?id=ad19db6504b6dc33, https://workflowhub.eu/workflows/1686?version=1, https://workflowhub.eu/workflows/247?version=2, https://workflowhub.eu/workflows/248?version=4, https://workflowhub.eu/workflows/761?version=1, https://workflowhub.eu/workflows/762?version=1, https://workflowhub.eu/workflows/763?version=1, https://workflowhub.eu/workflows/764?version=1 |
computational-chemistry/htmd-analysis |
|
analyse_short_astro_text_astro_tool |
analyse_short_astro_text_astro_tool |
Tool to analyse short astrophysics texts |
2024-06-04 |
|
0.0.1+galaxy0 |
astroquery |
|
To update |
Astronomy |
|
|
|
|
astroteam |
https://github.com/esg-epfl-apc/tools-astro/tree/main/tools |
https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/analyse-short-astro-text |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
https://workflowhub.eu/workflows/1353?version=2 |
|
|
appendfdr |
append_fdr |
|
2015-01-24 |
|
0.2.0 |
|
|
To update |
|
|
|
|
|
galaxyp |
|
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/appendfdr |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
aquainfra_importer |
aquainfra_importer |
A data source tool for downloading datasets via the AquaINFRA Interaction Platform. |
2024-05-14 |
https://github.com/AquaINFRA/galaxy |
1.0 |
|
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/AquaINFRA/tools-ecology/tree/aquainfra_importer |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/aquainfra_importer |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
36 |
36 |
277 |
277 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
277 |
277 |
36 |
36 |
|
|
|
aquainfra_ogc_api_processes |
aquainfra_ogc_api_processes |
Wrapper for OGC API Processes developed in the AquaINFRA project. |
2024-10-10 |
https://github.com/AquaINFRA/galaxy |
0.7.0 |
r-base |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/AquaINFRA/tools-ecology/tree/master |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/aquainfra_ogc_api_processes |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
26 |
26 |
257 |
257 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
257 |
257 |
26 |
26 |
https://usegalaxy.eu/published/workflow?id=140b2882fc32d49f |
|
|
artbio_bam_cleaning |
artbio_bam_cleaning |
filter bam files before somatic-varscan or lumpy-smoove analysis |
2020-10-02 |
http://artbio.fr |
1.10+galaxy0 |
samtools |
1.22.1 |
To update |
SAM, Variant Analysis |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/artbio_bam_cleaning |
https://github.com/ARTbio/tools-artbio/tree/main/tools/artbio_bam_cleaning |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
astronomicalarchivestool |
astronomical_archives |
Astronomical archives tools contains tools for querying and fetching resources from astronomical archives into Galaxy |
2023-07-17 |
|
0.10.21 |
astropy |
|
To update |
Data Source |
|
|
|
|
astroteam |
https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/ |
https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/archives/pyvo_integration |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
7 |
7 |
55 |
55 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
55 |
55 |
7 |
7 |
|
|
|
astropytools |
astropy_csv2fits, astropy_fits2bitmap, astropy_fits2csv, astropy_fitsinfo |
AstropyTools library contains Galaxy tools for elementary Astrophysical operations |
2023-04-11 |
https://github.com/astropy/astropy |
0.1.0+galaxy1 |
astropy |
|
To update |
Astronomy |
|
|
|
|
astroteam |
https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools |
https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools |
|
|
|
|
0 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
3 |
3 |
13 |
13 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
13 |
3 |
3 |
https://usegalaxy.eu/published/workflow?id=bc78c184fabcff1d, https://usegalaxy.eu/published/workflow?id=d9535e4afec8866b, https://workflowhub.eu/workflows/1267?version=1, https://workflowhub.eu/workflows/1353?version=2, https://workflowhub.eu/workflows/1369?version=1, https://workflowhub.eu/workflows/1730?version=1 |
|
|
atlas_fastq_provider |
fastq_provider |
Retrieval and download of FASTQ files from ENA and other repositories such as HCA. |
2022-03-09 |
https://github.com/ebi-gene-expression-group/atlas-fastq-provider |
0.4.4 |
atlas-fastq-provider |
0.4.7 |
To update |
Data Source, RNA, Transcriptomics |
|
|
|
|
ebi-gxa |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/fastq_provider |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/fastq_provider |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
bamparse |
bamparse |
Generates hit count lists from bam alignments. |
2017-10-12 |
http://artbio.fr |
4.1.1 |
pysam |
0.23.3 |
To update |
RNA, Transcriptomics |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/bamparse |
https://github.com/ARTbio/tools-artbio/tree/main/tools/bamparse |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
baseline_toxicity_calculator |
tt_baseline |
Toxicity prediction using QSAR models |
2024-03-25 |
https://github.com/bernt-matthias/mb-galaxy-tools |
0.1.0+galaxy0 |
pandas |
|
To update |
Ecology, Text Manipulation |
|
|
|
|
mbernt |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/tox_tools/baseline_calculator |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/tox_tools/baseline_calculator |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
bed_to_protein_map |
bed_to_protein_map |
Converts a BED file to a tabular list of exon locations |
2018-01-04 |
|
0.2.0 |
python |
|
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/bed_to_protein_map |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/bed_to_protein_map |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
135 |
142 |
409 |
440 |
104 |
104 |
373 |
373 |
14 |
14 |
180 |
180 |
0 |
0 |
0 |
0 |
993 |
962 |
260 |
253 |
https://dev.workflowhub.eu/workflows/1042?version=1, https://dev.workflowhub.eu/workflows/1201?version=2, https://dev.workflowhub.eu/workflows/1386?version=1, https://dev.workflowhub.eu/workflows/1398?version=1, https://usegalaxy.eu/published/workflow?id=17916f0229e3c868, https://usegalaxy.eu/published/workflow?id=39afbf843b5513bf, https://usegalaxy.eu/published/workflow?id=3a8150c81b90a3a7, https://usegalaxy.eu/published/workflow?id=6e6cf59bfeb938bf, https://usegalaxy.eu/published/workflow?id=a2f36d4dd48d8ec2, https://usegalaxy.eu/published/workflow?id=a7638e7f908fd90d, https://usegalaxy.org.au/published/workflow?id=0ebaaecf61dfc921, https://usegalaxy.org.au/published/workflow?id=157e7614ae18849b, https://usegalaxy.org.au/published/workflow?id=7cd4fcc8e06ce4fd, https://usegalaxy.org/published/workflow?id=6a3e47124e32e260, https://usegalaxy.org/published/workflow?id=e336bca259abd474, https://workflowhub.eu/workflows/1407?version=1, https://workflowhub.eu/workflows/1437?version=1, https://workflowhub.eu/workflows/1788?version=1 |
proteomics/neoantigen-non-reference-database-generation, proteomics/proteogenomics-dbcreation |
|
bgc_ocean |
harmonize_insitu_to_netcdf |
Process in-situ and biogechemical oceanographic Argo or Glider data for the Earth System |
2024-12-05 |
https://github.com/Marie59/FE-ft-ESG/tree/main/ocean |
3.0 |
|
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/bgc_ocean |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/bgc_ocean |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
19 |
19 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
19 |
19 |
2 |
2 |
https://usegalaxy.eu/published/workflow?id=44827462c065bae3, https://usegalaxy.eu/published/workflow?id=d3d9d1f173fd7bfe |
|
|
bigwig_to_bedgraph |
bigwig_to_bedgraph |
Converts a bigWig file to bedGraph format |
2021-10-06 |
http://artbio.fr |
377+galaxy1 |
ucsc-bigwigtobedgraph |
482 |
To update |
Convert Formats |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/bigwig_to_bedgraph |
https://github.com/ARTbio/tools-artbio/tree/main/tools/bigwig_to_bedgraph |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
641 |
753 |
6696 |
7952 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
3 |
0 |
0 |
0 |
0 |
7955 |
6696 |
754 |
641 |
|
|
|
bigwig_to_wig |
bigwig_to_wig |
Converts a bigWig file to Wiggle (WIG) format |
2018-09-25 |
https://artbio.fr |
3+galaxy0 |
ucsc-bigwiginfo |
482 |
To update |
Convert Formats |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/bigwig_to_wig |
https://github.com/ARTbio/tools-artbio/tree/main/tools/bigwig_to_wig |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
bio3d |
bio3d_dccm, bio3d_pca, bio3d_rmsd, bio3d_rmsf, bio3d_pca_visualize |
Bio3d is a program that can be used to analyse molecular dynamics trajectories. |
2018-10-03 |
http://thegrantlab.org/bio3d/index.php |
2.4_1 |
r-bio3d |
2.3_3 |
To update |
Computational chemistry |
|
|
|
|
chemteam |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/bio3d |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/bio3d |
|
|
|
|
5 |
4 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
5 |
5 |
0 |
345 |
357 |
11824 |
12101 |
90 |
90 |
1162 |
1162 |
78 |
78 |
3022 |
3022 |
0 |
0 |
0 |
0 |
16285 |
16008 |
525 |
513 |
https://dev.workflowhub.eu/workflows/1062?version=1, https://dev.workflowhub.eu/workflows/1122?version=1, https://usegalaxy.eu/published/workflow?id=092d01f759659e6b, https://usegalaxy.eu/published/workflow?id=9858fdf13a522ea8, https://usegalaxy.org.au/published/workflow?id=5add59b908662af0, https://usegalaxy.org.au/published/workflow?id=c2f25a1bf07e8ab1, https://workflowhub.eu/workflows/1689?version=1, https://workflowhub.eu/workflows/1697?version=1 |
computational-chemistry/analysis-md-simulations, computational-chemistry/htmd-analysis |
|
biobb_pytorch |
biobb_pytorch_apply_mdae, biobb_pytorch_train_mdae |
biobb_pytorch is the Biobb module collection to create and train ML & DL models using the popular [PyTorch](https://pytorch.org/) Python library. |
2024-06-26 |
https://github.com/bioexcel/biobb_pytorch |
4.2.1 |
biobb_pytorch |
5.1.0 |
To update |
Molecular Dynamics, Computational chemistry |
|
|
|
|
chemteam |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/biobb_pytorch |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/biobb_pytorch |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
bioconductor-msnbase |
bioconductor_msnbase_centroid, bioconductor_msnbase_smooth_chromatogram, bioconductor_msnbase_smooth_mz |
MSnbase provides infrastructure for manipulation, processing and visualisation of mass spectrometry and proteomics data, ranging from raw to quantitative and annotated data. |
2025-01-22 |
https://bioconductor.org/packages/release/bioc/html/MSnbase.html |
2.32.0 |
bioconductor-msnbase |
2.32.0 |
Up-to-date |
Metabolomics, Proteomics |
Data handling, Visualisation |
Data handling, Visualisation |
Proteomics, Proteomics experiment, Data management, Data visualisation |
Proteomics, Proteomics experiment, Data visualisation |
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/bioconductor-msnbase |
https://github.com/RECETOX/galaxytools/tree/master/tools/bioconductor-msnbase |
msnbase |
MSnbase |
Basic plotting, data manipulation and processing of MS-based Proteomics data. |
|
0 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
bioconductor_mzr |
bioconductor_mzr_convert |
Galaxy wrapper for the Bioconductor mzR package, enabling conversion between common mass spectrometry data formats (mzML, mzXML, netCDF) within Galaxy workflows. |
2025-06-19 |
https://bioconductor.org/packages/mzR |
2.40.0 |
bioconductor-mzr |
2.40.0 |
Up-to-date |
Proteomics, Metabolomics |
Formatting |
Formatting |
Proteomics, Proteomics experiment, Data management |
Proteomics, Proteomics experiment |
recetox |
https://github.com/RECETOX/galaxytools/tree/main/tools/bioconductor-mzR |
https://github.com/RECETOX/galaxytools/tree/master/tools/bioconductor-mzR |
mzr |
mzR |
Provides a unified API to the common file formats and parsers available for mass spectrometry data. It comes with a wrapper for the ISB random access parser for mass spectrometry mzXML, mzData and mzML files. The package contains the original code written by the ISB, and a subset of the proteowizard library for mzML and mzIdentML. The netCDF reading code has previously been used in XCMS. |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
bioconductor_scp |
bioconductor_scp |
scp is a package for the single cell proteomics data processing. |
2025-01-21 |
https://uclouvain-cbio.github.io/scp/index.html |
1.16.0 |
bioconductor-scp |
1.16.0 |
Up-to-date |
Proteomics, Single Cell |
Visualisation, Expression analysis |
Visualisation, Expression analysis |
Proteomics experiment, Proteomics |
Proteomics experiment, Proteomics |
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/bioconductor-scp |
https://github.com/RECETOX/galaxytools/tree/master/tools/bioconductor-scp |
scp |
scp |
Utility functions for manipulating, processing, and analyzing mass spectrometry-based single-cell proteomics data. The package is an extension to the 'QFeatures' package and relies on 'SingleCellExpirement' to enable single-cell proteomics analyses. The package offers the user the functionality to process quantitative table (as generated by MaxQuant, Proteome Discoverer, and more) into data tables ready for downstream analysis and data visualization. |
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
proteomics/bioconductor-scp |
|
biomoldyn |
biomd_neqgamma, fastpca, biomd_extract_clusters, biomd_rmsd_clustering |
Tools for MD analysis |
2020-01-30 |
https://github.com/moldyn/ |
1.5.2 |
scipy |
|
To update |
Molecular Dynamics, Computational chemistry |
|
|
|
|
chemteam |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/biomoldyn |
|
|
|
|
4 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
3 |
0 |
81 |
81 |
550 |
550 |
101 |
101 |
557 |
557 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1107 |
1107 |
182 |
182 |
https://usegalaxy.eu/published/workflow?id=1b10ece62e745125, https://usegalaxy.eu/published/workflow?id=d1357759d0962144, https://usegalaxy.eu/published/workflow?id=e3b0b521ee8f2aef, https://usegalaxy.org/published/workflow?id=195a608c481040de, https://usegalaxy.org/published/workflow?id=28c7e8269d478244, https://usegalaxy.org/published/workflow?id=634bbef1f67a0e30, https://workflowhub.eu/workflows/249?version=4 |
|
|
biotransformer |
biotransformer |
BioTransformer is a tool for prediction of small molecule metabolism in mammals. |
2020-08-26 |
https://bitbucket.org/djoumbou/biotransformerjar/src/master/ |
3.0.20230403 |
biotransformer |
3.0.20230403 |
Up-to-date |
Metabolomics |
Metabolic pathway prediction, PTM site prediction, Natural product identification |
Metabolic pathway prediction, PTM site prediction, Natural product identification |
Small molecules, Endocrinology and metabolism, Metabolomics, Carbohydrates, NMR |
Small molecules, Endocrinology and metabolism, Metabolomics, Carbohydrates, NMR |
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/biotransformer |
https://github.com/RECETOX/galaxytools/tree/master/tools/biotransformer |
biotransformer |
BioTransformer |
BioTransformer is a freely available web server that supports accurate, rapid and comprehensive in silico metabolism prediction. |
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
67 |
67 |
0 |
0 |
0 |
0 |
67 |
67 |
1 |
1 |
|
|
|
blast2go |
blast2go |
Maps BLAST results to GO annotation terms |
2013-09-23 |
https://github.com/peterjc/galaxy_blast/tree/master/tools/blast2go |
0.0.11 |
b2g4pipe |
|
To update |
Ontology Manipulation, Sequence Analysis |
Gene functional annotation |
Gene functional annotation |
Nucleic acid sites, features and motifs |
Nucleic acid sites, features and motifs |
peterjc |
https://github.com/peterjc/galaxy_blast/tree/master/tools/blast2go |
https://github.com/peterjc/galaxy_blast/tree/master/tools/blast2go |
Blast2GO |
Blast2GO |
Bioinformatics platform for high-quality functional annotation and analysis of genomic datasets. It allows analyzing and visualizing newly sequenced genomes by combining state-of-the-art methodologies, standard resources and algorithms. It allows to gain biological insights fast and easy even for completely novel genomes. Perform out-of-the-box the entire workflow of functional annotation of your transcriptomic datasets including its analysis and biological interpretation. |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
235 |
301 |
977 |
1238 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
3 |
10 |
1248 |
980 |
302 |
236 |
https://usegalaxy.eu/published/workflow?id=33312e5643279e8a |
|
|
blast_plus_remote_blastp |
blast_plus_remote_blastp |
NCBI BLAST+ with -remote option |
2015-01-24 |
https://blast.ncbi.nlm.nih.gov/ |
2.6.0 |
blast |
2.17.0 |
To update |
Sequence Analysis |
|
|
|
|
galaxyp |
https://github.com/peterjc/galaxy_blast/tree/master/tools/ncbi_blast_plus |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/blast_plus_remote_blastp |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
blast_rbh |
blast_reciprocal_best_hits |
BLAST Reciprocal Best Hits (RBH) from two FASTA files |
2014-05-15 |
https://github.com/peterjc/galaxy_blast/tree/master/tools/blast_rbh |
0.3.0 |
biopython |
1.70 |
To update |
Fasta Manipulation, Sequence Analysis |
Gene functional annotation, Nucleic acid sequence analysis |
Gene functional annotation, Nucleic acid sequence analysis |
Nucleic acid sites, features and motifs |
Nucleic acid sites, features and motifs |
peterjc |
https://github.com/peterjc/galaxy_blast/tree/master/tools/blast_rbh |
https://github.com/peterjc/galaxy_blast/tree/master/tools/blast_rbh |
blast_rbh |
blast_rbh |
This tool is a short Python script to run reciprocal BLAST searches on a pair of sequence files, and extract the reciprocal best hits. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
336 |
411 |
18624 |
27781 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
27781 |
18624 |
411 |
336 |
https://usegalaxy.eu/published/workflow?id=7f6950394a8c9c4a |
|
|
blast_to_scaffold |
blast2scaffold |
Generate DNA scaffold from blastn or tblastx alignments of Contigs |
2016-01-05 |
http://artbio.fr |
1.1.0 |
python |
|
To update |
RNA, Sequence Analysis, Assembly |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/blast_to_scaffold |
https://github.com/ARTbio/tools-artbio/tree/main/tools/blast_to_scaffold |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
8 |
8 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8 |
8 |
1 |
1 |
|
|
|
blast_unmatched |
blast_unmatched |
Extract unmatched query sequences from blast |
2017-10-03 |
http://artbio.fr |
1.0.1 |
python |
|
To update |
Fasta Manipulation |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/blast_unmatched |
https://github.com/ARTbio/tools-artbio/tree/main/tools/blast_unmatched |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
blastparser_and_hits |
BlastParser_and_hits |
Parse blast outputs and compile hits |
2017-10-15 |
http://artbio.fr |
2.7.1 |
python |
|
To update |
Assembly, RNA |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/master/tools/blastparser_and_hits |
https://github.com/ARTbio/tools-artbio/tree/main/tools/blastparser_and_hits |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
8 |
8 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8 |
8 |
1 |
1 |
|
|
|
blastx_to_scaffold |
blastx2scaffold |
Generate DNA scaffold from blastx alignment of Contigs |
2015-06-17 |
http://artbio.fr |
1.1.1 |
python |
|
To update |
RNA, Sequence Analysis, Assembly |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/blastx_to_scaffold |
https://github.com/ARTbio/tools-artbio/tree/main/tools/blastx_to_scaffold |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
blastxml_to_top_descr |
blastxml_to_top_descr |
Make table of top BLAST match descriptions |
2013-09-23 |
https://github.com/peterjc/galaxy_blast/tree/master/tools/blastxml_to_top_descr |
0.1.2 |
python |
|
To update |
Convert Formats, Sequence Analysis, Text Manipulation |
Sequence alignment, Sequence annotation |
Sequence alignment, Sequence annotation |
Sequence analysis |
Sequence analysis |
peterjc |
https://github.com/peterjc/galaxy_blast/tree/master/tools/blastxml_to_top_descr |
https://github.com/peterjc/galaxy_blast/tree/master/tools/blastxml_to_top_descr |
blastxml_to_top_descr |
blastxml_to_top_descr |
This tool is a short Python script to parse a BLAST XML file, and extract the identifiers with description for the top matches (by default the top 3), and output these as a simple tabular file along with the query identifiers. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
521 |
617 |
263808 |
265716 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
265716 |
263808 |
617 |
521 |
https://usegalaxy.eu/published/workflow?id=33312e5643279e8a, https://usegalaxy.eu/published/workflow?id=8f747dbff3216993, https://usegalaxy.eu/published/workflow?id=bebcbd6f0ffa55c5, https://usegalaxy.eu/published/workflow?id=e14b81a8c0b1b7a4 |
|
|
bumbershoot |
idpqonvertEmbedder, idpassemble, idpqonvert, idpquery, myrimatch |
|
2015-08-28 |
http://proteowizard.sourceforge.net/ |
3.0.21142 |
bumbershoot |
3_0_21142_0e4f4a4 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/bumbershoot |
|
|
|
|
0 |
0 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
5 |
0 |
15 |
21 |
980 |
1439 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1439 |
980 |
21 |
15 |
|
|
|
c3s |
c3s |
Copernicus Climate Change Service (C3S) |
2021-04-13 |
https://cds.climate.copernicus.eu/cdsapp#!/search?type=dataset |
0.3.0 |
python |
|
To update |
Climate Analysis |
|
|
|
|
climate |
https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s |
https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
15 |
15 |
340 |
340 |
5 |
5 |
6 |
6 |
3 |
3 |
113 |
113 |
0 |
0 |
0 |
0 |
459 |
459 |
23 |
23 |
https://dev.workflowhub.eu/workflows/1312?version=1, https://usegalaxy.eu/published/workflow?id=21363a774a7575f0, https://usegalaxy.eu/published/workflow?id=ac5b66c42681e7a8, https://usegalaxy.eu/published/workflow?id=b610849d70c1e225, https://usegalaxy.eu/published/workflow?id=ddb21f7793eff83d, https://workflowhub.eu/workflows/1625?version=1 |
climate/earth_system, contributing/create-new-tutorial |
|
cads |
cads |
Copernicus Atmosphere Data Store (ADS) |
2021-06-19 |
https://ads.atmosphere.copernicus.eu/#!/home |
0.1.0 |
python |
|
To update |
Climate Analysis |
|
|
|
|
climate |
https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/cads |
https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/cads |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
1 |
1 |
52 |
52 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
52 |
52 |
1 |
1 |
|
|
|
calisp |
calisp |
Calgary approach to isotopes in proteomics |
2023-06-01 |
https://github.com/kinestetika/Calisp/ |
3.0.13 |
calisp |
3.1.4 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tools/calisp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/calisp |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
3 |
3 |
223 |
223 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
223 |
223 |
3 |
3 |
|
|
|
cap3 |
cap3 |
cap3 wrapper |
2017-09-02 |
http://artbio.fr |
2.0.1 |
cap3 |
10.2011 |
To update |
Assembly |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/cap3 |
https://github.com/ARTbio/tools-artbio/tree/main/tools/cap3 |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
208 |
208 |
11740 |
11740 |
0 |
0 |
0 |
0 |
158 |
158 |
7360 |
7360 |
0 |
0 |
0 |
0 |
19100 |
19100 |
366 |
366 |
https://usegalaxy.eu/published/workflow?id=98bfad0c684011e9, https://usegalaxy.eu/published/workflow?id=ab646c6ab6de7061, https://usegalaxy.org.au/published/workflow?id=94c7fdcbbc7b428a, https://usegalaxy.org.au/published/workflow?id=dccc8fb49d61ac33 |
|
|
cardinal |
cardinal_classification, cardinal_colocalization, cardinal_combine, cardinal_data_exporter, cardinal_filtering, cardinal_mz_images, cardinal_preprocessing, cardinal_quality_report, cardinal_segmentations, cardinal_single_ion_segmentation, cardinal_spectra_plots |
Statistical and computational tools for analyzing mass spectrometry imaging datasets |
2018-10-01 |
http://cardinalmsi.org |
3.4.3 |
bioconductor-cardinal |
3.8.0 |
To update |
Proteomics, Metabolomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal |
|
|
|
|
0 |
9 |
11 |
11 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
9 |
11 |
9 |
0 |
152 |
175 |
38090 |
50857 |
1 |
1 |
12 |
12 |
58 |
58 |
8501 |
8501 |
25 |
25 |
129 |
129 |
59499 |
46732 |
259 |
236 |
https://dev.workflowhub.eu/workflows/1061?version=1, https://dev.workflowhub.eu/workflows/1123?version=1, https://dev.workflowhub.eu/workflows/1184?version=1, https://usegalaxy.eu/published/workflow?id=03e8b0d3dcedc092, https://usegalaxy.eu/published/workflow?id=785433e42d82be65, https://usegalaxy.eu/published/workflow?id=7ee6976f69131683, https://usegalaxy.eu/published/workflow?id=9e497c5c9e64d9b3, https://usegalaxy.eu/published/workflow?id=a5ca8b9807ed3f73, https://usegalaxy.eu/published/workflow?id=f4a55ef0d4c2cd97, https://usegalaxy.eu/published/workflow?id=fb233e418d015649, https://usegalaxy.org.au/published/workflow?id=04f6ad62f34313ea, https://usegalaxy.org.au/published/workflow?id=3678781bf7619a89, https://usegalaxy.org.au/published/workflow?id=80cf8be8c8bf384a, https://workflowhub.eu/workflows/1455?version=1, https://workflowhub.eu/workflows/1587?version=1, https://workflowhub.eu/workflows/1593?version=1 |
metabolomics/msi-analyte-distribution, metabolomics/msi-finding-nglycans, proteomics/mass-spectrometry-imaging-loading-exploring-data |
|
cdo |
cdo_info, cdo_operations |
CDO (Climate Data Operators) is a collection of command line Operators to manipulate and analyse Climate and NWP model Data.Supported data formats are GRIB 1/2, netCDF 3/4, SERVICE, EXTRA and IEG. There are more than 600 operators available. |
2021-09-01 |
https://code.mpimet.mpg.de/projects/cdo/ |
2.0.0 |
|
|
To update |
Climate Analysis |
|
|
|
|
climate |
https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/cdo |
https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/cdo |
|
|
|
|
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
14 |
14 |
228 |
228 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
228 |
228 |
14 |
14 |
https://dev.workflowhub.eu/workflows/1260?version=1, https://usegalaxy.eu/published/workflow?id=4f0f3b911b4e4921, https://usegalaxy.eu/published/workflow?id=6afc245029ce5008, https://usegalaxy.eu/published/workflow?id=b4bfcbf8acee9cc3, https://usegalaxy.eu/published/workflow?id=d94460f342b70eb3, https://workflowhub.eu/workflows/1652?version=1 |
ecology/x-array-map-plot |
|
cds_essential_variability |
cds_essential_variability |
Get Copernicus Essential Climate Variables for assessing climate variability |
2019-05-03 |
https://cds.climate.copernicus.eu/cdsapp#!/dataset/ecv-for-climate-change?tab=overview |
0.2.0 |
python |
|
To update |
Climate Analysis, Data Source |
|
|
|
|
climate |
https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables |
https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/essential_climate_variables |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
38 |
40 |
191 |
336 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
336 |
191 |
40 |
38 |
https://dev.workflowhub.eu/workflows/1138?version=2, https://usegalaxy.eu/published/workflow?id=392a5d91ac221104, https://usegalaxy.eu/published/workflow?id=f774cf05ddff3612, https://workflowhub.eu/workflows/1441?version=1 |
climate/climate-101 |
|
cesm |
cesm |
Community Earth System Model (CESM) |
2021-06-15 |
https://www.cesm.ucar.edu/ |
2.1.3 |
cesm |
2.1.3 |
Up-to-date |
Climate Analysis |
|
|
|
|
climate |
https://github.com/ESCOMP/CESM |
https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/cesm |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
2 |
2 |
14 |
14 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
14 |
14 |
2 |
2 |
https://usegalaxy.eu/published/workflow?id=46b4ad3ce0b7bc0b |
|
|
champ_blocs |
cb_dissim, cb_ivr, cb_div |
Compute indicators for turnover boulders fields |
2022-10-28 |
|
0.0.0 |
r-base |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/Marie59/champ_blocs |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/champ_blocs |
|
|
|
|
0 |
0 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
9 |
9 |
205 |
205 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
11 |
11 |
216 |
216 |
11 |
11 |
https://dev.workflowhub.eu/workflows/1256?version=1, https://usegalaxy.eu/published/workflow?id=a3ad27817f77061b, https://workflowhub.eu/workflows/1690?version=1, https://workflowhub.eu/workflows/661?version=1 |
ecology/champs-blocs |
|
checkv |
checkv_end_to_end |
Assess quality of single-contig viral genomes |
2024-09-13 |
https://bitbucket.org/berkeleylab/checkv/ |
1.0.3 |
checkv |
1.0.3 |
Up-to-date |
Metagenomics |
Sequence assembly, Validation, Read mapping |
Sequence assembly, Validation, Read mapping |
Metagenomics, Sequence assembly, Metagenomic sequencing, Mapping |
Metagenomics, Sequence assembly, Metagenomic sequencing, Mapping |
ufz |
https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/tools/checkv/ |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/checkv |
checkv |
CheckV |
CheckV is a fully automated command-line pipeline for assessing the quality of single-contig viral genomes, including identification of host contamination for integrated proviruses, estimating completeness for genome fragments, and identification of closed genomes. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
9 |
9 |
38 |
38 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
38 |
38 |
9 |
9 |
https://usegalaxy.eu/published/workflow?id=36de05d50c703164, https://usegalaxy.eu/published/workflow?id=87231a6a7938cb95 |
|
|
cherry_pick_fasta |
cherry_pick_fasta |
Pick fasta sequence with specific header content |
2015-06-17 |
http://artbio.fr |
4.1 |
python |
|
To update |
Fasta Manipulation |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/cherry_pick_fasta |
https://github.com/ARTbio/tools-artbio/tree/main/tools/cherry_pick_fasta |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
climate_stripes |
climate_stripes |
Create climate stripes from a tabular input file |
2019-10-05 |
https://www.climate-lab-book.ac.uk/2018/warming-stripes/ |
1.0.2 |
python |
|
To update |
Climate Analysis, Visualization |
|
|
|
|
climate |
https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes |
https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/climate-stripes |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
34 |
35 |
218 |
239 |
3 |
3 |
19 |
19 |
3 |
3 |
224 |
224 |
0 |
0 |
0 |
0 |
482 |
461 |
41 |
40 |
https://dev.workflowhub.eu/workflows/1138?version=2, https://dev.workflowhub.eu/workflows/1195?version=2, https://usegalaxy.eu/published/workflow?id=0c6dd9e75d9a2130, https://usegalaxy.eu/published/workflow?id=392a5d91ac221104, https://workflowhub.eu/workflows/123?version=1, https://workflowhub.eu/workflows/1432?version=1, https://workflowhub.eu/workflows/1441?version=1 |
climate/climate-101, climate/pangeo |
|
concatenate_multiple_datasets |
cat_multi_datasets |
Concatenate multiple datasets tail-to-head, including collection datasets. |
2018-03-11 |
http://artbio.fr |
1.4.3 |
|
|
To update |
Text Manipulation |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/concat_multi_datasets |
https://github.com/ARTbio/tools-artbio/tree/main/tools/concat_multi_datasets |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
752 |
753 |
9303 |
9305 |
319 |
319 |
2156 |
2156 |
242 |
297 |
2917 |
3974 |
1 |
1 |
3 |
3 |
15438 |
14379 |
1370 |
1314 |
https://usegalaxy.eu/published/workflow?id=03ef267ff7634a4b, https://usegalaxy.eu/published/workflow?id=18af9bbae833f8fe, https://usegalaxy.eu/published/workflow?id=373d861ef4b0081a, https://usegalaxy.eu/published/workflow?id=43098b8afe78b071, https://usegalaxy.eu/published/workflow?id=6aaf2b342d57f78d, https://usegalaxy.eu/published/workflow?id=7bda7ae31c427347, https://usegalaxy.eu/published/workflow?id=7cbda24fd0767899, https://usegalaxy.eu/published/workflow?id=82879b0eb4a71ad0, https://usegalaxy.eu/published/workflow?id=83c5bf0208f4d217, https://usegalaxy.eu/published/workflow?id=841367f185aaade4, https://usegalaxy.eu/published/workflow?id=8c6371b360217f72, https://usegalaxy.eu/published/workflow?id=aa5b077da1d36b23, https://usegalaxy.eu/published/workflow?id=b0377f05f97b18b1, https://usegalaxy.eu/published/workflow?id=b6457cb04bf31613, https://usegalaxy.eu/published/workflow?id=ce5c9287a67e6085, https://usegalaxy.eu/published/workflow?id=cf0159c14418525e, https://usegalaxy.eu/published/workflow?id=e4dabaf57668dbd1, https://usegalaxy.eu/published/workflow?id=e8a8c0b59ba9d593, https://usegalaxy.eu/published/workflow?id=ea3b120f105434ec, https://usegalaxy.org.au/published/workflow?id=869440d35a618836, https://usegalaxy.org.au/published/workflow?id=92fcdd490831c6c5, https://usegalaxy.org/published/workflow?id=2a4823c060dd216e, https://usegalaxy.org/published/workflow?id=31186e478383465b, https://usegalaxy.org/published/workflow?id=3511da8b41b1fb5d, https://usegalaxy.org/published/workflow?id=412da1489d6aed45, https://usegalaxy.org/published/workflow?id=46207bf9ce5ee26a, https://usegalaxy.org/published/workflow?id=4680511d4daad5d7, https://usegalaxy.org/published/workflow?id=4c996921fb6a2334, https://usegalaxy.org/published/workflow?id=696b2efc589afd6f, https://usegalaxy.org/published/workflow?id=7454015793c4adc9, https://usegalaxy.org/published/workflow?id=8b4945a0fb49e03e, https://usegalaxy.org/published/workflow?id=a97c694b3298ae44, https://usegalaxy.org/published/workflow?id=ac3755c1ae5f7f16, https://usegalaxy.org/published/workflow?id=af85a2ae187409f4, https://usegalaxy.org/published/workflow?id=b7c67632a6eabda5, https://usegalaxy.org/published/workflow?id=c7693951c6215e19, https://usegalaxy.org/published/workflow?id=d1ca40dd7e591025, https://usegalaxy.org/published/workflow?id=d485bf21a5069fe4, https://workflowhub.eu/workflows/1189?version=2, https://workflowhub.eu/workflows/1407?version=1, https://workflowhub.eu/workflows/233?version=1, https://workflowhub.eu/workflows/622?version=11 |
proteomics/proteogenomics-dbcreation |
|
consalign |
aligned_to_consensus |
Tool to compute a consensus sequence from several aligned fasta sequences |
2023-04-11 |
|
1.0.0 |
r-bioseq |
|
To update |
Sequence Analysis |
|
|
|
|
ecology |
https://github.com/ColineRoyaux/Galaxy_tool_projects/tree/main/consensus_from_alignments |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/consensus_from_alignments |
|
|
|
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
198 |
198 |
1511 |
1511 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
14 |
14 |
4349 |
4349 |
5860 |
5860 |
212 |
212 |
https://dev.workflowhub.eu/workflows/1287?version=2, https://dev.workflowhub.eu/workflows/1292?version=2, https://usegalaxy.fr/published/workflow?id=41264142d3c00016, https://usegalaxy.fr/published/workflow?id=8b1678200a1d157a, https://workflowhub.eu/workflows/1630?version=1, https://workflowhub.eu/workflows/1635?version=1 |
sequence-analysis/Manage_AB1_Sanger |
|
consolidate_vcfs |
consolidate_vcfs |
Combines freebayes and mpileup files for use by vcf2snvalignment |
2015-11-05 |
https://snvphyl.readthedocs.io/en/latest/ |
1.8.2 |
snvphyl-tools |
1.8.2 |
Up-to-date |
Sequence Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/snvphyl-galaxy |
https://github.com/phac-nml/snvphyl-galaxy/tree/development/tools/snvphyl-tools/consolidate_vcfs |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
cooler |
cooler_balance, cooler_cload_tabix, cooler_csort_tabix, cooler_makebins, cooler_zoomify |
cooler different tools to process Hi-C from mirnylab |
2017-07-27 |
https://github.com/open2c/cooler |
0.9.3 |
htslib |
1.22.1 |
To update |
Epigenetics |
|
|
|
|
lldelisle |
https://github.com/lldelisle/tools-lldelisle/blob/master/tools/cooler/.shed.yml |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/cooler |
|
|
|
|
4 |
0 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
22 |
22 |
298 |
298 |
28 |
28 |
236 |
236 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
534 |
534 |
50 |
50 |
https://usegalaxy.eu/published/workflow?id=1214523f54a999fc, https://usegalaxy.eu/published/workflow?id=2a9c812f59b7b36c, https://usegalaxy.eu/published/workflow?id=4464d3b0fc782a1a, https://usegalaxy.eu/published/workflow?id=506a451679fe25b4, https://usegalaxy.eu/published/workflow?id=72201ffaf488f278, https://usegalaxy.eu/published/workflow?id=9843ae66c3b367b7, https://usegalaxy.eu/published/workflow?id=9f8a93cfffb31cd6, https://usegalaxy.eu/published/workflow?id=9fc8b89954c04ee1, https://usegalaxy.eu/published/workflow?id=ceb0a029c6d33ec6, https://usegalaxy.eu/published/workflow?id=d9fc0df2a159e542, https://usegalaxy.eu/published/workflow?id=f394d1b12779ba41, https://usegalaxy.eu/published/workflow?id=fc4e3479d86f9a26, https://usegalaxy.org/published/workflow?id=06eaa5b141fe7a08, https://usegalaxy.org/published/workflow?id=0bc1b8888d8b20c4, https://usegalaxy.org/published/workflow?id=1dc312e3fba9f810, https://usegalaxy.org/published/workflow?id=1e4eb6ccb47d9fc7, https://usegalaxy.org/published/workflow?id=4998f171ec922c7d, https://usegalaxy.org/published/workflow?id=7353afb9301780e5, https://usegalaxy.org/published/workflow?id=a93eb877596ce0ef, https://usegalaxy.org/published/workflow?id=b31ab9e76409a9b7, https://usegalaxy.org/published/workflow?id=c8a92318855d85a5, https://usegalaxy.org/published/workflow?id=f13432eef7ac28e9, https://usegalaxy.org/published/workflow?id=f21d576695f9fe77, https://usegalaxy.org/published/workflow?id=f80b80aa7fb196ba, https://workflowhub.eu/workflows/1103?version=3, https://workflowhub.eu/workflows/1104?version=2, https://workflowhub.eu/workflows/420?version=3 |
|
|
cpm_tpm_rpk |
cpm_tpm_rpk |
Generate CPM,TPM or RPK from raw counts |
2018-07-11 |
http://artbio.fr |
0.6.0 |
r-optparse |
1.3.2 |
To update |
Transcriptomics |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/cpm_tpm_rpk |
https://github.com/ARTbio/tools-artbio/tree/main/tools/cpm_tpm_rpk |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
crbeam_astro_tool |
crbeam_astro_tool |
CRbeam |
2024-01-31 |
|
0.0.2+galaxy0 |
crbeam |
|
To update |
Astronomy |
|
|
|
|
astroteam |
https://github.com/esg-epfl-apc/tools-astro/tree/main/tools |
https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/crbeam |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
https://workflowhub.eu/workflows/1369?version=1 |
|
|
cta_astro_tool |
cta_astro_tool |
Basic simulation of CTA telescope observations using gammapy package |
2024-04-19 |
|
0.0.1+galaxy0 |
unzip |
|
To update |
Astronomy |
|
|
|
|
astroteam |
https://github.com/esg-epfl-apc/tools-astro/tree/main/tools |
https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/cta |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
|
|
|
ctsm_fates |
ctsm_fates |
EMERALD version of the Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Community Terrestrial Systems Model as host model |
2020-10-21 |
https://github.com/NordicESMhub/ctsm/blob/fates_emerald_api/README_fates_emerald_api |
2.0 |
fates-emerald |
|
To update |
Climate Analysis |
|
|
|
|
climate |
https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald |
https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
70 |
70 |
268 |
268 |
11 |
11 |
34 |
34 |
1 |
1 |
124 |
124 |
0 |
0 |
0 |
0 |
426 |
426 |
82 |
82 |
https://dev.workflowhub.eu/workflows/1185?version=2, https://usegalaxy.eu/published/workflow?id=7b50e72deb46c6e8, https://workflowhub.eu/workflows/1427?version=1 |
climate/fates |
|
custom_pro_db |
custom_pro_db |
CustomProDB |
2017-10-06 |
https://bioconductor.org/packages/release/bioc/html/customProDB.html |
1.22.0 |
bioconductor-rgalaxy |
1.37.1 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/custom_pro_db |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/probam_suite/custom_pro_db |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
146 |
151 |
1723 |
1775 |
77 |
77 |
461 |
461 |
13 |
13 |
425 |
425 |
0 |
0 |
0 |
0 |
2661 |
2609 |
241 |
236 |
https://dev.workflowhub.eu/workflows/1042?version=1, https://dev.workflowhub.eu/workflows/1201?version=2, https://dev.workflowhub.eu/workflows/1386?version=1, https://dev.workflowhub.eu/workflows/1398?version=1, https://usegalaxy.eu/published/workflow?id=17916f0229e3c868, https://usegalaxy.eu/published/workflow?id=39afbf843b5513bf, https://usegalaxy.eu/published/workflow?id=3a8150c81b90a3a7, https://usegalaxy.eu/published/workflow?id=6e6cf59bfeb938bf, https://usegalaxy.eu/published/workflow?id=a2f36d4dd48d8ec2, https://usegalaxy.eu/published/workflow?id=a7638e7f908fd90d, https://usegalaxy.eu/published/workflow?id=c3f2350f0be2d9c9, https://usegalaxy.org.au/published/workflow?id=0ebaaecf61dfc921, https://usegalaxy.org.au/published/workflow?id=157e7614ae18849b, https://usegalaxy.org.au/published/workflow?id=7cd4fcc8e06ce4fd, https://usegalaxy.org/published/workflow?id=6a3e47124e32e260, https://usegalaxy.org/published/workflow?id=e336bca259abd474, https://workflowhub.eu/workflows/1407?version=1, https://workflowhub.eu/workflows/1437?version=1, https://workflowhub.eu/workflows/1788?version=1 |
proteomics/neoantigen-non-reference-database-generation, proteomics/proteogenomics-dbcreation |
|
custom_pro_db_annotation_data_manager |
|
CustomProDB Annotation |
2017-10-06 |
https://bioconductor.org/packages/release/bioc/html/customProDB.html |
|
|
|
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/custom_pro_db |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/probam_suite/custom_pro_db_annotation_data_manager |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
data_exploration |
tool_anonymization, ecology_homogeneity_normality, ecology_beta_diversity, ecology_link_between_var, ecology_presence_abs_abund, ecology_stat_presence_abs |
Explore data through multiple statistical tools |
2021-06-23 |
|
0.0.0 |
r-tangles |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/Marie59/Data_explo_tools |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/data_exploration |
|
|
|
|
0 |
0 |
6 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
0 |
0 |
115 |
115 |
1212 |
1212 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
6 |
40 |
40 |
1252 |
1252 |
121 |
121 |
https://dev.workflowhub.eu/workflows/1278?version=1, https://usegalaxy.eu/published/workflow?id=7b576a562031ff7e, https://usegalaxy.eu/published/workflow?id=a0404f6291874c01, https://workflowhub.eu/workflows/1693?version=1, https://workflowhub.eu/workflows/656?version=1 |
ecology/biodiversity-data-exploration |
|
data_manager_eggnog_mapper |
|
downloads eggnog data for eggnog-mapper |
2019-11-11 |
|
|
|
|
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper_data_manager |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/data_manager_eggnog_mapper |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
data_manager_eggnog_mapper_abspath |
|
download eggnog data for eggnog-mapper |
2019-11-11 |
|
|
|
|
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/data_manager_eggnog_mapper_abspath |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/data_manager_eggnog_mapper_abspath |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
dbbuilder |
dbbuilder |
Protein Database Downloader |
2015-01-24 |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/dbbuilder |
0.3.4 |
wget |
|
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/dbbuilder |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/dbbuilder |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
918 |
1053 |
6311 |
7176 |
10 |
10 |
26 |
26 |
94 |
94 |
1135 |
1135 |
13 |
13 |
26 |
26 |
8363 |
7498 |
1170 |
1035 |
https://dev.workflowhub.eu/workflows/1199?version=2, https://dev.workflowhub.eu/workflows/1204?version=2, https://dev.workflowhub.eu/workflows/1351?version=1, https://dev.workflowhub.eu/workflows/1354?version=1, https://dev.workflowhub.eu/workflows/1369?version=1, https://dev.workflowhub.eu/workflows/1372?version=1, https://usegalaxy.eu/published/workflow?id=03e52c8c71710cae, https://usegalaxy.eu/published/workflow?id=229a955d29bd4064, https://usegalaxy.eu/published/workflow?id=3e01a2c6d954ae6e, https://usegalaxy.eu/published/workflow?id=41d096891bada138, https://usegalaxy.eu/published/workflow?id=41df8c7821b5f2fc, https://usegalaxy.eu/published/workflow?id=41e9882300fa2386, https://usegalaxy.eu/published/workflow?id=5374daf356516a40, https://usegalaxy.eu/published/workflow?id=5e4774036aa20b80, https://usegalaxy.eu/published/workflow?id=607ca3a9d45bd080, https://usegalaxy.eu/published/workflow?id=612dc5bdf388585f, https://usegalaxy.eu/published/workflow?id=6306656ec10bd18f, https://usegalaxy.eu/published/workflow?id=6cb85fe1ad0c9f3b, https://usegalaxy.eu/published/workflow?id=6e5f0d05c91876c2, https://usegalaxy.eu/published/workflow?id=71816adecac46e74, https://usegalaxy.eu/published/workflow?id=73dc2384535bf6af, https://usegalaxy.eu/published/workflow?id=7dd7908f4c8d722a, https://usegalaxy.eu/published/workflow?id=82b6871682f1659a, https://usegalaxy.eu/published/workflow?id=8af41219411062ad, https://usegalaxy.eu/published/workflow?id=912b81c444e35045, https://usegalaxy.eu/published/workflow?id=9a8b5e99ca9500e3, https://usegalaxy.eu/published/workflow?id=9b9e1e28f3683f92, https://usegalaxy.eu/published/workflow?id=9e0d784860d6cc91, https://usegalaxy.eu/published/workflow?id=9ef76d764d9961b2, https://usegalaxy.eu/published/workflow?id=afb138fc03ca61a8, https://usegalaxy.eu/published/workflow?id=c4119ea7ffd29094, https://usegalaxy.eu/published/workflow?id=c6aecbdbeb27585f, https://usegalaxy.eu/published/workflow?id=cb9a26ea53ce7a27, https://usegalaxy.eu/published/workflow?id=d2a9d4eb5b3c72a2, https://usegalaxy.eu/published/workflow?id=d55df785d4c71876, https://usegalaxy.eu/published/workflow?id=d87fc6685e47d27d, https://usegalaxy.eu/published/workflow?id=eb54512829d8509c, https://usegalaxy.eu/published/workflow?id=eeb6cff210cac091, https://usegalaxy.eu/published/workflow?id=f0bec337f9998289, https://usegalaxy.eu/published/workflow?id=f2b45a7ff4f449e6, https://usegalaxy.org.au/published/workflow?id=65a659982f955743, https://usegalaxy.org.au/published/workflow?id=7cddb345877f08bf, https://usegalaxy.org.au/published/workflow?id=9281258aefd17c0c, https://usegalaxy.org.au/published/workflow?id=ba217a34d7e1b5ee, https://usegalaxy.org/published/workflow?id=42331381df05b956, https://usegalaxy.org/published/workflow?id=e97da2da9e0290a7, https://workflowhub.eu/workflows/1218?version=1, https://workflowhub.eu/workflows/1225?version=1, https://workflowhub.eu/workflows/1396?version=1, https://workflowhub.eu/workflows/1425?version=1, https://workflowhub.eu/workflows/1434?version=1, https://workflowhub.eu/workflows/1435?version=1, https://workflowhub.eu/workflows/1438?version=1, https://workflowhub.eu/workflows/1464?version=1 |
microbiome/clinical-mp-1-database-generation, microbiome/clinical-mp-2-discovery, microbiome/clinical-mp-3-verification, proteomics/clinical-mp-1-database-generation, proteomics/clinical-mp-2-discovery, proteomics/clinical-mp-3-verification, proteomics/database-handling |
|
decoyfasta |
|
Galaxy tool wrapper for the transproteomic pipeline decoyFASTA tool. |
2015-01-24 |
|
|
|
|
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/decoyfasta |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/decoyfasta |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
deseq2_normalization |
deseq2_normalization |
Normalizes gene hitlists |
2018-01-05 |
http://artbio.fr |
1.40.2+galaxy1 |
bioconductor-deseq2 |
1.46.0 |
To update |
Transcriptomics, Statistics, Single Cell |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/deseq2_normalization |
https://github.com/ARTbio/tools-artbio/tree/main/tools/deseq2_normalization |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
desi_legacy_survey_astro_tool |
desi_legacy_survey_astro_tool |
Tool to query Legacy Survey data |
2024-11-14 |
|
0.0.2+galaxy0 |
astropy |
|
To update |
Astronomy |
|
|
|
|
astroteam |
https://github.com/esg-epfl-apc/tools-astro/tree/main/tools |
https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/desi-legacy-survey |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
https://usegalaxy.eu/published/workflow?id=bc78c184fabcff1d, https://workflowhub.eu/workflows/1353?version=2, https://workflowhub.eu/workflows/1730?version=1 |
|
|
dfast |
dfast |
Prokaryotic genome annotation |
2025-04-16 |
https://github.com/nigyta/dfast_core/ |
1.3.6 |
dfast |
1.3.6 |
Up-to-date |
Genome annotation |
Genome annotation |
Genome annotation |
Nucleic acid structure analysis, Genomics, Sequence analysis |
Nucleic acid structure analysis, Genomics, Sequence analysis |
ufz |
https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/tools/dfast/ |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/dfast |
dfast |
DFAST |
Flexible prokaryotic genome annotation pipeline for faster genome publication. |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
dfpl |
dfpl_predict, dfpl_train |
Galaxy wrapper for deepFPlearn. |
2024-12-18 |
https://github.com/yigbt/deepFPlearn |
2.1 |
deepfplearn |
2.1 |
Up-to-date |
Computational chemistry, Machine Learning |
|
|
|
|
ufz |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/dfpl |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/dfpl |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
dia_umpire |
dia_umpire_se |
DIA-Umpire analysis for data independent acquisition (DIA) mass spectrometry-based proteomics |
2015-08-26 |
http://diaumpire.sourceforge.net/ |
2.1.3 |
dia_umpire |
2.1.6 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/dia_umpire |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/dia_umpire |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
4 |
4 |
21 |
33 |
0 |
0 |
0 |
0 |
4 |
4 |
155 |
155 |
0 |
0 |
0 |
0 |
188 |
176 |
8 |
8 |
|
|
|
dialignr |
dialignr |
DIAlignR is an R package for retention time alignment of targeted mass spectrometric data, including DIA and SWATH-MS data. This tool works with MS2 chromatograms directly and uses dynamic programming for alignment of raw chromatographic traces. DIAlignR uses a hybrid approach of global (feature-based) and local (raw data-based) alignment to establish correspondence between peaks. |
2020-12-23 |
https://github.com/shubham1637/DIAlignR |
1.2.0 |
bioconductor-dialignr |
2.10.0 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/dialignr |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/dialignr |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
2 |
2 |
40 |
40 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
40 |
40 |
2 |
2 |
|
|
|
diann |
diann |
DiaNN (DIA-based Neural Networks) is a software for DIA/SWATH data processing. |
2023-06-26 |
https://github.com/vdemichev/DiaNN |
1.8.1 |
|
|
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/vdemichev/DiaNN |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/diann |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
18 |
18 |
111 |
111 |
0 |
0 |
0 |
0 |
18 |
18 |
240 |
240 |
0 |
0 |
0 |
0 |
351 |
351 |
36 |
36 |
|
|
|
diapysef |
diapysef |
diapysef is a convenience package for working with DIA-PASEF data |
2020-02-27 |
https://pypi.org/project/diapysef/ |
0.3.5.0 |
diapysef |
1.0.10 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproject/tools-iuc/tree/master/tools/diapysef |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/diapysef |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
40 |
40 |
266 |
266 |
0 |
0 |
0 |
0 |
6 |
6 |
319 |
319 |
0 |
0 |
0 |
0 |
585 |
585 |
46 |
46 |
https://dev.workflowhub.eu/workflows/1039?version=1, https://dev.workflowhub.eu/workflows/1224?version=2, https://workflowhub.eu/workflows/1421?version=1 |
proteomics/DIA_lib_OSW |
|
diffacto |
diffacto |
Diffacto comparative protein abundance estimation |
2021-06-20 |
https://github.com/statisticalbiotechnology/diffacto |
1.0.6 |
diffacto |
1.0.7 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/diffacto |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/diffacto |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
7 |
7 |
11 |
11 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
11 |
7 |
7 |
|
|
|
digestdb |
digestdb |
|
2015-01-24 |
|
0.1.0 |
trans_proteomic_pipeline |
|
To update |
|
|
|
|
|
galaxyp |
|
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/digestdb |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
directag_and_tagrecon |
|
|
2015-01-24 |
|
|
|
|
To update |
|
|
|
|
|
galaxyp |
|
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/directag_and_tagrecon |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
dose_response_analysis_tool |
dr_curve |
A tool for analyzing and visualizing the relationship between various doses and their corresponding biological responses |
2024-04-06 |
https://github.com/bernt-matthias/mb-galaxy-tools |
3.0.1 |
r-drc |
3.0_1 |
To update |
Ecology |
|
|
|
|
ufz |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/tox_tools/dose_responses |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/tox_tools/dose_responses |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
droplet_barcode_plot |
_dropletBarcodePlot |
Make a cell barcode plot for droplet single-cell RNA-seq QC |
2019-11-07 |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary |
1.6.1+galaxy2 |
scxa-plots |
0.0.1 |
To update |
Sequence Analysis |
|
|
|
|
ebi-gxa |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/droplet-rank-plot/.shed.yml |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/droplet-barcode-plot |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
234 |
234 |
1360 |
1364 |
81 |
81 |
365 |
365 |
1 |
1 |
23 |
23 |
0 |
0 |
0 |
0 |
1752 |
1748 |
316 |
316 |
https://dev.workflowhub.eu/workflows/1024?version=1, https://dev.workflowhub.eu/workflows/1025?version=1, https://dev.workflowhub.eu/workflows/1263?version=1, https://usegalaxy.eu/published/workflow?id=1e2d27fae8a41ac1, https://usegalaxy.eu/published/workflow?id=9a9bbd8046da7b19, https://usegalaxy.eu/published/workflow?id=c6adc3b665828a6f, https://usegalaxy.eu/published/workflow?id=df455b86fff16116, https://usegalaxy.eu/published/workflow?id=e06934a35fc18f2c, https://usegalaxy.eu/published/workflow?id=f944ad0c35d1a472, https://usegalaxy.org/published/workflow?id=1fe6b25825d9b736, https://usegalaxy.org/published/workflow?id=a2a924b871b1c96d, https://workflowhub.eu/workflows/1533?version=1, https://workflowhub.eu/workflows/1537?version=1 |
single-cell/scrna-case_alevin |
|
earth |
landcover_subindicator |
Access, process, visualise oceanographic data for the Earth System |
2024-10-21 |
https://github.com/Marie59/FE-ft-ESG/tree/main/earth |
0.1.0 |
numpy |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/earth |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/earth |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
1 |
1 |
|
|
|
ecoregionalization |
ecoregion_brt_analysis, ecoregion_GeoNearestNeighbor, ecoregion_cluster_estimate, ClaraGuess, ecoregion_clara_cluster, ecoregion_eco_map, indicspecies, ecoregion_taxa_seeker |
Tools to compute ecoregionalization with BRT model predictions and clustering. |
2023-07-26 |
https://github.com/PaulineSGN/Workflow_Galaxy |
0.1.2+galaxy0 |
r-base |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow |
|
|
|
|
0 |
0 |
8 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
0 |
0 |
11 |
11 |
642 |
642 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
642 |
642 |
11 |
11 |
https://dev.workflowhub.eu/workflows/1363?version=1, https://usegalaxy.eu/published/workflow?id=749bb05ec8674bec, https://usegalaxy.eu/published/workflow?id=89ff2a1143954d83, https://usegalaxy.eu/published/workflow?id=b727b64f37238fff, https://usegalaxy.eu/published/workflow?id=c5de0b794849e1b1, https://workflowhub.eu/workflows/1208?version=1, https://workflowhub.eu/workflows/1209?version=1, https://workflowhub.eu/workflows/1680?version=1, https://workflowhub.eu/workflows/658?version=1 |
ecology/Ecoregionalization_tutorial, ecology/ecoregiolifetraits |
|
eggnog_mapper |
eggnog_mapper, eggnog_mapper_annotate, eggnog_mapper_search |
eggnog-mapper fast functional annotation of novel sequences |
2019-11-11 |
|
2.1.8 |
eggnog-mapper |
2.1.13 |
To update |
Proteomics |
Homology-based gene prediction, Genome annotation, Fold recognition, Information extraction, Query and retrieval |
Homology-based gene prediction, Genome annotation, Fold recognition, Information extraction, Query and retrieval |
Metagenomics, Phylogeny, Transcriptomics, Workflows, Sequence analysis |
Metagenomics, Phylogeny, Transcriptomics, Workflows, Sequence analysis |
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper |
eggnog-mapper-v2 |
eggNOG-mapper v2 |
EggNOG-mapper is a tool for fast functional annotation of novel sequences. It uses precomputed orthologous groups and phylogenies from the eggNOG database (http://eggnog5.embl.de) to transfer functional information from fine-grained orthologs only. |
|
3 |
3 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
1 |
3 |
3 |
0 |
1315 |
1321 |
39884 |
40140 |
85 |
85 |
985 |
985 |
436 |
436 |
22184 |
22184 |
127 |
127 |
65332 |
65332 |
128641 |
128385 |
1969 |
1963 |
https://dev.workflowhub.eu/workflows/1183?version=1, https://dev.workflowhub.eu/workflows/1202?version=1, https://usegalaxy.cz/published/workflow?id=932f4901960a595a, https://usegalaxy.eu/published/workflow?id=2d2862b48918b22f, https://usegalaxy.eu/published/workflow?id=87231a6a7938cb95, https://usegalaxy.eu/published/workflow?id=9b9e1e28f3683f92, https://usegalaxy.eu/published/workflow?id=a448400f69594135, https://usegalaxy.eu/published/workflow?id=c5e6047b3b256b06, https://usegalaxy.eu/published/workflow?id=cc59ae1a9878942c, https://usegalaxy.org.au/published/workflow?id=35f39173f0ac9179, https://usegalaxy.org.au/published/workflow?id=4e161a8f5098cc49, https://usegalaxy.org.au/published/workflow?id=876163677f1cccc4, https://usegalaxy.org/published/workflow?id=92613e1e0b13aa0a, https://workflowhub.eu/workflows/1262?version=1, https://workflowhub.eu/workflows/1521?version=1, https://workflowhub.eu/workflows/1525?version=1, https://workflowhub.eu/workflows/754?version=1, https://workflowhub.eu/workflows/755?version=1 |
genome-annotation/funannotate, genome-annotation/functional |
|
embl2fa |
embl2fa |
Converts EMBL flat format to fasta format |
2022-11-12 |
http://artbio.fr |
0.2 |
|
|
To update |
Text Manipulation |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/embl2fa |
https://github.com/ARTbio/tools-artbio/tree/main/tools/embl2fa |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
emlassemblyline |
annotations_template, eal_table_template, eal_templates, eml2eal, eml_validate, entities_template, geo_cov_template, makeeml, raster_template, taxo_cov_template, vector_template |
Tools using EML Assembly Line R package to generate EML metadata from template metadata files and vice versa |
2023-07-21 |
https://github.com/EDIorg/EMLassemblyline |
0.1.0+galaxy0 |
r-base |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline |
|
|
|
|
0 |
0 |
11 |
9 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
40 |
40 |
618 |
618 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
618 |
618 |
40 |
40 |
https://usegalaxy.eu/published/workflow?id=a30d511e3dda0895, https://usegalaxy.eu/published/workflow?id=ab89c61db3d7abbb |
|
|
encyclopedia |
encyclopedia_encyclopedia, encyclopedia_fasta_to_prosit_csv, encyclopedia_library_to_blib, encyclopedia_prosit_csv_to_library, encyclopedia_quantify, encyclopedia_searchtolib, encyclopedia_walnut |
Mass Spec Data-Independent Acquisition (DIA) MS/MS analysis |
2020-09-11 |
https://bitbucket.org/searleb/encyclopedia/wiki/Home |
1.12.34 |
encyclopedia |
2.12.30 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/encyclopedia/tools/encyclopedia |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/encyclopedia |
|
|
|
|
2 |
4 |
7 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 |
0 |
0 |
28 |
28 |
774 |
774 |
3 |
3 |
36 |
36 |
5 |
5 |
47 |
47 |
0 |
0 |
0 |
0 |
857 |
857 |
36 |
36 |
https://dev.workflowhub.eu/workflows/1027?version=1, https://dev.workflowhub.eu/workflows/1146?version=3, https://usegalaxy.eu/published/workflow?id=14f9c2099db30570, https://usegalaxy.eu/published/workflow?id=3676aafc35dc2fe7, https://usegalaxy.eu/published/workflow?id=5d4e4b9f07a1ec20, https://usegalaxy.eu/published/workflow?id=5dec0e5a2d75cdc1, https://usegalaxy.eu/published/workflow?id=87c21b682af78ec9, https://usegalaxy.eu/published/workflow?id=9ac15b644c805a2b, https://usegalaxy.eu/published/workflow?id=f1309010689eb98a, https://workflowhub.eu/workflows/1471?version=1 |
proteomics/encyclopedia |
|
eodie |
eodie |
Earth Observation Data Information Extractor |
2021-12-30 |
https://eodie.readthedocs.io/ |
1.0.2 |
eodie |
|
To update |
Climate Analysis |
|
|
|
|
climate |
https://gitlab.com/eetun-tiimi/EODIE |
https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/eodie |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
4 |
4 |
45 |
45 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
45 |
45 |
4 |
4 |
|
|
|
eukcc |
eukcc_single |
Galaxy wrapper for EukCC |
2025-07-25 |
https://github.com/EBI-Metagenomics/EukCC |
2.1.3 |
eukcc |
2.1.3 |
Up-to-date |
Metagenomics |
Sequence assembly validation |
Sequence assembly validation |
Metagenomics |
Metagenomics |
ufz |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/eukcc |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/eukcc |
eukcc |
EukCC |
EukCC is a completeness and contamination estimator for metagenomic assembled microbial eukaryotic genomes. |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
ez_histograms |
ez_histograms |
ggplot2 histograms and density plots |
2024-02-07 |
https://github.com/tidyverse/ggplot2 |
3.4.4 |
r-ggplot2 |
2.2.1 |
To update |
Visualization, Statistics |
Data analysis, Statistical calculation, Visualisation |
Statistical calculation, Visualisation |
Ecology |
Ecology |
artbio |
https://github.com/artbio/tools-artbio/tree/main/tools/ez_histograms |
https://github.com/ARTbio/tools-artbio/tree/main/tools/ez_histograms |
ez_histograms |
ez_histograms |
This tool produces histograms or density plots from any tabular datasets, using ggplot2.You may provide headerless tables as well as tables with column headers. Any non-numeric columns will be filtered out. Your first column may contains row names, but it will also work if your first column already corresponds to the numeric values of a variable. |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
fasta_merge_files_and_filter_unique_sequences |
fasta_merge_files_and_filter_unique_sequences |
Concatenate FASTA database files together |
2015-01-24 |
https://github.com/galaxyproteomics/tools-galaxyp/ |
1.2.0 |
python |
|
To update |
Fasta Manipulation |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/fasta_merge_files_and_filter_unique_sequences |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/fasta_merge_files_and_filter_unique_sequences |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1274 |
1424 |
32878 |
34429 |
1505 |
1505 |
38138 |
38138 |
266 |
266 |
5572 |
5572 |
26 |
26 |
282 |
282 |
78421 |
76870 |
3221 |
3071 |
https://dev.workflowhub.eu/workflows/1042?version=1, https://dev.workflowhub.eu/workflows/1077?version=2, https://dev.workflowhub.eu/workflows/1199?version=2, https://dev.workflowhub.eu/workflows/1201?version=2, https://dev.workflowhub.eu/workflows/1204?version=2, https://dev.workflowhub.eu/workflows/1350?version=1, https://dev.workflowhub.eu/workflows/1351?version=1, https://dev.workflowhub.eu/workflows/1354?version=1, https://dev.workflowhub.eu/workflows/1369?version=1, https://dev.workflowhub.eu/workflows/1370?version=1, https://dev.workflowhub.eu/workflows/1372?version=1, https://dev.workflowhub.eu/workflows/1384?version=1, https://dev.workflowhub.eu/workflows/1386?version=1, https://dev.workflowhub.eu/workflows/1398?version=1, https://usegalaxy.eu/published/workflow?id=03e52c8c71710cae, https://usegalaxy.eu/published/workflow?id=17916f0229e3c868, https://usegalaxy.eu/published/workflow?id=1809fcaec264eac9, https://usegalaxy.eu/published/workflow?id=1860e02bcb894a64, https://usegalaxy.eu/published/workflow?id=229a955d29bd4064, https://usegalaxy.eu/published/workflow?id=2f7e13eb26c8cd18, https://usegalaxy.eu/published/workflow?id=3081569659a45b9e, https://usegalaxy.eu/published/workflow?id=376119528377a3ae, https://usegalaxy.eu/published/workflow?id=39afbf843b5513bf, https://usegalaxy.eu/published/workflow?id=3a8150c81b90a3a7, https://usegalaxy.eu/published/workflow?id=3e01a2c6d954ae6e, https://usegalaxy.eu/published/workflow?id=3fe4aa24e80e35c1, https://usegalaxy.eu/published/workflow?id=41df8c7821b5f2fc, https://usegalaxy.eu/published/workflow?id=41e9882300fa2386, https://usegalaxy.eu/published/workflow?id=4c81726bde25c36a, https://usegalaxy.eu/published/workflow?id=5374daf356516a40, https://usegalaxy.eu/published/workflow?id=5e4774036aa20b80, https://usegalaxy.eu/published/workflow?id=607ca3a9d45bd080, https://usegalaxy.eu/published/workflow?id=612dc5bdf388585f, https://usegalaxy.eu/published/workflow?id=6306656ec10bd18f, https://usegalaxy.eu/published/workflow?id=6cb85fe1ad0c9f3b, https://usegalaxy.eu/published/workflow?id=6e5f0d05c91876c2, https://usegalaxy.eu/published/workflow?id=6e6cf59bfeb938bf, https://usegalaxy.eu/published/workflow?id=71816adecac46e74, https://usegalaxy.eu/published/workflow?id=73dc2384535bf6af, https://usegalaxy.eu/published/workflow?id=7cfbf4b7bd3f30d3, https://usegalaxy.eu/published/workflow?id=7dd7908f4c8d722a, https://usegalaxy.eu/published/workflow?id=7e05f46acdfb81c4, https://usegalaxy.eu/published/workflow?id=82b6871682f1659a, https://usegalaxy.eu/published/workflow?id=8af41219411062ad, https://usegalaxy.eu/published/workflow?id=8ef3379dded2490a, https://usegalaxy.eu/published/workflow?id=90f993a1b245eb68, https://usegalaxy.eu/published/workflow?id=912b81c444e35045, https://usegalaxy.eu/published/workflow?id=93d1035a307fe63d, https://usegalaxy.eu/published/workflow?id=9a8b5e99ca9500e3, https://usegalaxy.eu/published/workflow?id=9ef76d764d9961b2, https://usegalaxy.eu/published/workflow?id=a2f36d4dd48d8ec2, https://usegalaxy.eu/published/workflow?id=a7638e7f908fd90d, https://usegalaxy.eu/published/workflow?id=afb138fc03ca61a8, https://usegalaxy.eu/published/workflow?id=b681f7b677b23168, https://usegalaxy.eu/published/workflow?id=b73fa5f8c0403454, https://usegalaxy.eu/published/workflow?id=bebcbd6f0ffa55c5, https://usegalaxy.eu/published/workflow?id=c4119ea7ffd29094, https://usegalaxy.eu/published/workflow?id=c6aecbdbeb27585f, https://usegalaxy.eu/published/workflow?id=c8bc4af6dd3b5d02, https://usegalaxy.eu/published/workflow?id=cb9a26ea53ce7a27, https://usegalaxy.eu/published/workflow?id=d2a9d4eb5b3c72a2, https://usegalaxy.eu/published/workflow?id=d2f75f70c33394ee, https://usegalaxy.eu/published/workflow?id=d55df785d4c71876, https://usegalaxy.eu/published/workflow?id=d5756e3ebfa285ef, https://usegalaxy.eu/published/workflow?id=d7c7a4d6c8072167, https://usegalaxy.eu/published/workflow?id=d87fc6685e47d27d, https://usegalaxy.eu/published/workflow?id=eb54512829d8509c, https://usegalaxy.eu/published/workflow?id=eeb6cff210cac091, https://usegalaxy.eu/published/workflow?id=f0bec337f9998289, https://usegalaxy.eu/published/workflow?id=f2b45a7ff4f449e6, https://usegalaxy.eu/published/workflow?id=f6a763951d815944, https://usegalaxy.org.au/published/workflow?id=0ebaaecf61dfc921, https://usegalaxy.org.au/published/workflow?id=157e7614ae18849b, https://usegalaxy.org.au/published/workflow?id=3242ec69dec6e13f, https://usegalaxy.org.au/published/workflow?id=351f3fab960c013b, https://usegalaxy.org.au/published/workflow?id=65a659982f955743, https://usegalaxy.org.au/published/workflow?id=7cd4fcc8e06ce4fd, https://usegalaxy.org.au/published/workflow?id=7cddb345877f08bf, https://usegalaxy.org.au/published/workflow?id=9281258aefd17c0c, https://usegalaxy.org.au/published/workflow?id=9365a7de314c9f85, https://usegalaxy.org.au/published/workflow?id=b60922a253df6654, https://usegalaxy.org.au/published/workflow?id=ba217a34d7e1b5ee, https://usegalaxy.org.au/published/workflow?id=eda40b58616a0fe4, https://usegalaxy.org/published/workflow?id=2be8ecd5922d23d1, https://usegalaxy.org/published/workflow?id=2d3063882d8239ff, https://usegalaxy.org/published/workflow?id=3ef08553982f6ffc, https://usegalaxy.org/published/workflow?id=42331381df05b956, https://usegalaxy.org/published/workflow?id=48dafc35989f13b1, https://usegalaxy.org/published/workflow?id=4b7e73bb7ac93c95, https://usegalaxy.org/published/workflow?id=63adc811e3ae529d, https://usegalaxy.org/published/workflow?id=6a3e47124e32e260, https://usegalaxy.org/published/workflow?id=93810012f2610de4, https://usegalaxy.org/published/workflow?id=e336bca259abd474, https://usegalaxy.org/published/workflow?id=e3a30c0583183c1e, https://usegalaxy.org/published/workflow?id=e97da2da9e0290a7, https://workflowhub.eu/workflows/100?version=1, https://workflowhub.eu/workflows/102?version=1, https://workflowhub.eu/workflows/1060?version=1, https://workflowhub.eu/workflows/1216?version=1, https://workflowhub.eu/workflows/1218?version=1, https://workflowhub.eu/workflows/1225?version=1, https://workflowhub.eu/workflows/1374?version=1, https://workflowhub.eu/workflows/1396?version=1, https://workflowhub.eu/workflows/1407?version=1, https://workflowhub.eu/workflows/1410?version=1, https://workflowhub.eu/workflows/1425?version=1, https://workflowhub.eu/workflows/1434?version=1, https://workflowhub.eu/workflows/1435?version=1, https://workflowhub.eu/workflows/1437?version=1, https://workflowhub.eu/workflows/1438?version=1, https://workflowhub.eu/workflows/1461?version=1, https://workflowhub.eu/workflows/1464?version=1, https://workflowhub.eu/workflows/1474?version=1, https://workflowhub.eu/workflows/1487?version=2, https://workflowhub.eu/workflows/1788?version=1, https://workflowhub.eu/workflows/1793?version=1 |
microbiome/clinical-mp-1-database-generation, microbiome/clinical-mp-2-discovery, microbiome/clinical-mp-3-verification, microbiome/pathogen-detection-from-nanopore-foodborne-data, proteomics/clinical-mp-1-database-generation, proteomics/clinical-mp-2-discovery, proteomics/clinical-mp-3-verification, proteomics/database-handling, proteomics/neoantigen-fragpipe-discovery, proteomics/neoantigen-non-reference-database-generation, proteomics/proteogenomics-dbcreation |
|
fastg2protlib |
fastg2protlib-peptides, fastg2protlib-validate |
Generate FASTA from FASTG |
2020-07-23 |
https://github.com/galaxyproteomics/fastg2protlib.git |
1.0.2 |
|
|
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/fastg2protlib |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/fastg2protlib |
|
|
|
|
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
6 |
6 |
29 |
29 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
29 |
29 |
6 |
6 |
|
|
|
fastq_pair |
fastq_pair |
Paired-end fastq pairer |
2022-03-17 |
https://github.com/linsalrob/fastq-pair |
1.0+galaxy0 |
fastq-pair |
1.0 |
To update |
Fastq Manipulation |
|
|
|
|
ebi-gxa |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/qc/fastq_pair |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/qc/fastq_pair |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
fastq_quality_trimmer |
cshl_fastq_quality_trimmer |
FASTQ trimmer based on quality |
2022-03-11 |
https://github.com/agordon/fastx_toolkit |
0.0.14+galaxy0 |
fastx_toolkit |
0.0.14 |
To update |
Fastq Manipulation |
|
|
|
|
ebi-gxa |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/qc/fastq_quality_trimmer |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/qc/fastq_quality_trimmer |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
fastq_utils |
fastq_filter_n, fastq_trim_poly_at |
Set of tools for handling fastq files |
2022-02-15 |
https://github.com/nunofonseca/fastq_utils |
0.25.1+galaxy0 |
fastq_utils |
0.25.3 |
To update |
Transcriptomics, RNA |
|
|
|
|
ebi-gxa |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/qc/fastq_utils |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/qc/fastq_utils |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
feature_alignment |
feature_alignment |
TRIC integrates information from all available runs via a graph-based alignment strategy |
2015-02-06 |
|
0.11.0 |
msproteomicstools |
0.11.0 |
Up-to-date |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/msproteomicstools/msproteomicstools/blob/master/TRIC-README.md |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/feature_alignment |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
1 |
1 |
18 |
18 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
18 |
18 |
1 |
1 |
|
|
|
fetch_fasta_from_ncbi |
retrieve_fasta_from_NCBI |
Fetch fasta sequences from NCBI using eutils wrappers |
2015-06-17 |
http://artbio.fr |
3.1.0 |
urllib3 |
1.12 |
To update |
Fasta Manipulation, Data Source |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/fetch_fasta_from_ncbi |
https://github.com/ARTbio/tools-artbio/tree/main/tools/fetch_fasta_from_ncbi |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
4 |
5 |
1 |
2 |
1 |
|
|
|
filter_by_fasta_ids |
filter_by_fasta_ids |
Filter FASTA on the headers and/or the sequences |
2015-01-24 |
|
2.3 |
python |
|
To update |
Fasta Manipulation, Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/filter_by_fasta_ids |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/filter_by_fasta_ids |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
1093 |
1175 |
104341 |
108230 |
1345 |
1345 |
50058 |
50058 |
259 |
259 |
10567 |
10567 |
47 |
47 |
446 |
446 |
169301 |
165412 |
2826 |
2744 |
https://dev.workflowhub.eu/workflows/1287?version=2, https://dev.workflowhub.eu/workflows/1292?version=2, https://dev.workflowhub.eu/workflows/1318?version=2, https://usegalaxy.eu/published/workflow?id=02f240f6cf72080a, https://usegalaxy.eu/published/workflow?id=04a4dcac3fd922c5, https://usegalaxy.eu/published/workflow?id=1b38e0d69e366be1, https://usegalaxy.eu/published/workflow?id=21fc597d983f1194, https://usegalaxy.eu/published/workflow?id=2cec6a39cd496f09, https://usegalaxy.eu/published/workflow?id=2d2d0c2231babc50, https://usegalaxy.eu/published/workflow?id=7dd7908f4c8d722a, https://usegalaxy.eu/published/workflow?id=82a60d94d699efbf, https://usegalaxy.eu/published/workflow?id=93d1035a307fe63d, https://usegalaxy.eu/published/workflow?id=972db4abc51bb3ab, https://usegalaxy.eu/published/workflow?id=afb138fc03ca61a8, https://usegalaxy.eu/published/workflow?id=b51559006f86db9e, https://usegalaxy.eu/published/workflow?id=b681f7b677b23168, https://usegalaxy.eu/published/workflow?id=d2a9d4eb5b3c72a2, https://usegalaxy.eu/published/workflow?id=d55df785d4c71876, https://usegalaxy.eu/published/workflow?id=df08e520ec3dbcb7, https://usegalaxy.fr/published/workflow?id=41264142d3c00016, https://usegalaxy.fr/published/workflow?id=8b1678200a1d157a, https://usegalaxy.org.au/published/workflow?id=fba0eb562a710733, https://usegalaxy.org/published/workflow?id=386d3b300cf05305, https://usegalaxy.org/published/workflow?id=3c7349268d74c576, https://usegalaxy.org/published/workflow?id=4884918895db9af0, https://usegalaxy.org/published/workflow?id=4b7e73bb7ac93c95, https://usegalaxy.org/published/workflow?id=505c826e8c99d7bf, https://usegalaxy.org/published/workflow?id=89d3c800d3be6050, https://usegalaxy.org/published/workflow?id=94da3d448bb8a137, https://usegalaxy.org/published/workflow?id=ec3cc032a90c44f1, https://workflowhub.eu/workflows/1630?version=1, https://workflowhub.eu/workflows/1635?version=1, https://workflowhub.eu/workflows/1650?version=1, https://workflowhub.eu/workflows/1717?version=1 |
sequence-analysis/Manage_AB1_Sanger, sequence-analysis/tapscan-streptophyte-algae, transcriptomics/mirna-target-finder |
|
filter_compounds |
filter_orgmet_anorg |
Tool for filtering organometallics/anorganic compounds from a list of compounds. |
2021-01-06 |
https://github.com/RECETOX/galaxytools/ |
3.1.1 |
openbabel |
2.3.90dev7d621d9 |
To update |
Metabolomics |
|
|
|
|
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/filter_compounds |
https://github.com/RECETOX/galaxytools/tree/master/tools/filter_compounds |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
filter_density |
filterdensity |
Filter out position based on distance between SNVs |
2015-11-19 |
https://snvphyl.readthedocs.io/en/latest/ |
1.8.2 |
snvphyl-tools |
1.8.2 |
Up-to-date |
Sequence Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/snvphyl-galaxy |
https://github.com/phac-nml/snvphyl-galaxy/tree/development/tools/snvphyl-tools/filter_density |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
filter_stats |
filterstat |
SNVPhyl filter_stats |
2015-07-31 |
https://snvphyl.readthedocs.io/en/latest/ |
1.8.2 |
snvphyl-tools |
1.8.2 |
Up-to-date |
Sequence Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/snvphyl-galaxy |
https://github.com/phac-nml/snvphyl-galaxy/tree/development/tools/snvphyl-tools/filter_stats |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
filter_vcf |
filtervcf |
SNVPhyl filter_vcf |
2015-08-04 |
https://snvphyl.readthedocs.io/en/latest/ |
1.8.2 |
snvphyl-tools |
1.8.2 |
Up-to-date |
Sequence Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/snvphyl-galaxy |
https://github.com/phac-nml/snvphyl-galaxy/tree/development/tools/snvphyl-tools/filter_vcf |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
find_repeats |
findrepeat |
Find repetitive regions on a reference genome using MUMMer |
2015-07-31 |
https://snvphyl.readthedocs.io/en/latest/ |
1.8.2 |
snvphyl-tools |
1.8.2 |
Up-to-date |
Sequence Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/snvphyl-galaxy |
https://github.com/phac-nml/snvphyl-galaxy/tree/development/tools/snvphyl-tools/find_repeats |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
fishertest |
fishertest |
Fisher's exact test on two-column hit lists. |
2015-06-17 |
http://artbio.fr |
2.32.0+galaxy0 |
bioconductor-qvalue |
2.38.0 |
To update |
RNA, Statistics |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/fisher_test |
https://github.com/ARTbio/tools-artbio/tree/main/tools/fisher_test |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
fits2tiff_astro_tool |
fits2tiff_astro_tool |
Tool to convert FITS files to TIFF |
2025-07-18 |
|
0.0.1+galaxy0 |
astropy |
|
To update |
Astronomy |
|
|
|
|
astroteam |
https://github.com/esg-epfl-apc/tools-astro/tree/main/tools |
https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/fits2tiff |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
flashlfq |
flashlfq |
FlashLFQ mass-spectrometry proteomics label-free quantification |
2017-12-06 |
https://github.com/smith-chem-wisc/FlashLFQ |
1.0.3.1 |
flashlfq |
2.1.4 |
To update |
Proteomics |
Label-free quantification |
Label-free quantification |
Proteomics experiment, Proteomics |
Proteomics experiment, Proteomics |
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/flashlfq |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/flashlfq |
flashlfq |
FlashLFQ |
FlashLFQ is an ultrafast label-free quantification algorithm for mass-spectrometry proteomics. |
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
54 |
57 |
630 |
722 |
0 |
0 |
0 |
0 |
15 |
15 |
189 |
189 |
0 |
0 |
0 |
0 |
911 |
819 |
72 |
69 |
https://dev.workflowhub.eu/workflows/1177?version=2, https://dev.workflowhub.eu/workflows/1338?version=1, https://usegalaxy.eu/published/workflow?id=ba3a5d59b3879764, https://usegalaxy.eu/published/workflow?id=cd675ab32d3e7833, https://usegalaxy.eu/published/workflow?id=d0e062aee910086a, https://usegalaxy.eu/published/workflow?id=fc42cc9467c6ee8d, https://workflowhub.eu/workflows/1450?version=1 |
proteomics/metaquantome-data-creation |
|
fragpipe |
fragpipe |
Data analysis for mass spectrometry-based proteomics. |
2022-07-21 |
https://fragpipe.nesvilab.org/ |
20.0 |
fragpipe |
23.1 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/fragpipe |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/fragpipe |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
21 |
21 |
177 |
177 |
11 |
11 |
33 |
33 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
210 |
210 |
32 |
32 |
https://dev.workflowhub.eu/workflows/1384?version=1, https://usegalaxy.eu/published/workflow?id=8ef3379dded2490a, https://usegalaxy.eu/published/workflow?id=bee2a7669a7dea5b, https://usegalaxy.org.au/published/workflow?id=9365a7de314c9f85, https://usegalaxy.org/published/workflow?id=e3a30c0583183c1e, https://workflowhub.eu/workflows/1410?version=1, https://workflowhub.eu/workflows/1793?version=1 |
proteomics/neoantigen-fragpipe-discovery |
|
freeenergy |
|
Free energy tools of BRIDGE. |
2019-10-24 |
|
|
|
|
To update |
Molecular Dynamics, Computational chemistry |
|
|
|
|
chemteam |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tools/free_energy |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/free_energy |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
freqsap |
freqsap |
Get frequencies of single amino-acid polymorphisms based on nucleid-acid polymorphism for different populations from UniProt and DbSNP. |
2025-07-18 |
https://github.com/RECETOX/galaxytools |
1.0.0+galaxy0 |
pandas |
|
To update |
Proteomics |
|
|
|
|
recetox |
https://github.com/RECETOX/galaxytools/tree/main/tools/freqsap |
https://github.com/RECETOX/galaxytools/tree/master/tools/freqsap |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
frogs |
FROGS_affiliation_filters, FROGS_affiliation_postprocess, FROGS_affiliation_stats, FROGS_biom_to_stdBiom, FROGS_biom_to_tsv, FROGS_cluster_filters, FROGS_cluster_stats, FROGS_clustering, FROGS_demultiplex, FROGSSTAT_DESeq2_Preprocess, FROGSSTAT_DESeq2_Visualisation, FROGSFUNC_step2_functions, FROGSFUNC_step3_pathways, FROGSFUNC_step1_placeseqs, FROGS_itsx, FROGS_normalisation, FROGSSTAT_Phyloseq_Alpha_Diversity, FROGSSTAT_Phyloseq_Beta_Diversity, FROGSSTAT_Phyloseq_Sample_Clustering, FROGSSTAT_Phyloseq_Composition_Visualisation, FROGSSTAT_Phyloseq_Import_Data, FROGSSTAT_Phyloseq_Multivariate_Analysis_Of_Variance, FROGSSTAT_Phyloseq_Structure_Visualisation, FROGS_preprocess, FROGS_remove_chimera, FROGS_taxonomic_affiliation, FROGS_Tree, FROGS_tsv_to_biom |
Suite for metabarcoding analysis |
2021-08-16 |
http://frogs.toulouse.inrae.fr/ |
4.2.0 |
frogs |
5.0.2 |
To update |
Metagenomics |
|
|
|
|
frogs |
https://github.com/geraldinepascal/FROGS-wrappers/ |
https://github.com/geraldinepascal/FROGS-wrappers/tree/master/tools/frogs |
|
|
|
|
0 |
0 |
0 |
28 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
18 |
18 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1111 |
1111 |
60651 |
60685 |
60685 |
60651 |
1111 |
1111 |
https://usegalaxy.fr/published/workflow?id=048cb90ec1ac7120, https://usegalaxy.fr/published/workflow?id=2ac84b2bd45876cf, https://usegalaxy.fr/published/workflow?id=b46954345641a3b8, https://usegalaxy.fr/published/workflow?id=d68b4aa5337f016b |
|
|
from_hicup_to_juicebox |
fromHicupToJuicebox |
Convert the output of hicup (as sam or bam) to the input of juicebox. |
2018-06-05 |
|
0.0.2 |
pysam |
0.23.3 |
To update |
Epigenetics |
|
|
|
|
lldelisle |
|
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/fromHicupToJuicebox |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
fromgtftobed12 |
fromgtfTobed12 |
Convert GTF files to BED12 format |
2019-07-31 |
https://pythonhosted.org/gffutils/contents.html |
0.11.1+galaxy1 |
gffutils |
0.13 |
To update |
Convert Formats |
|
|
|
|
lldelisle |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/fromgtfTobed12 |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/fromgtfTobed12 |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
gatk4 |
filtermutectcalls, mergemutectstats, mutect2 |
Find somatic variations |
2021-12-29 |
http://artbio.fr |
4.1.7.0 |
gatk4 |
4.6.2.0 |
To update |
Variant Analysis |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/gatk4 |
https://github.com/ARTbio/tools-artbio/tree/main/tools/gatk4 |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
gc_derivatization |
gc_derivatization |
In silico derivatization for GC. |
2024-03-15 |
https://github.com/RECETOX/gc-meox-tms |
1.0.1 |
gc-meox-tms |
1.0.1 |
Up-to-date |
Metabolomics |
|
|
|
|
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/gc_derivatization |
https://github.com/RECETOX/galaxytools/tree/master/tools/gc_derivatization |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
3 |
3 |
0 |
0 |
0 |
0 |
1 |
1 |
19 |
19 |
0 |
0 |
0 |
0 |
22 |
22 |
2 |
2 |
|
|
|
gdal |
gdal_gdal_merge, gdal_gdal_translate, gdal_gdaladdo, gdal_gdalbuildvrt, gdal_gdalinfo, gdal_gdalwarp, gdal_ogr2ogr, gdal_ogrinfo |
Geospatial Data Abstraction Library tools are all dedicated to manipulate raster and vector geospatial data formats. |
2019-02-25 |
https://www.gdal.org |
3.0.0 |
|
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/gdal |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/gdal |
|
|
|
|
0 |
0 |
8 |
8 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8 |
8 |
0 |
12 |
14 |
1222 |
1508 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
3 |
3 |
1511 |
1225 |
16 |
14 |
https://dev.workflowhub.eu/workflows/1268?version=2, https://usegalaxy.eu/published/workflow?id=3b0803542deff026, https://usegalaxy.eu/published/workflow?id=b0b6c8756070650b, https://workflowhub.eu/workflows/1670?version=1, https://workflowhub.eu/workflows/404?version=1 |
ecology/gbif_cleaning |
|
genomad |
genomad_end_to_end |
Identify virus and plasmid genomes from nucleotide sequences |
2024-06-17 |
https://github.com/apcamargo/genomad/ |
1.11.1 |
genomad |
1.11.1 |
Up-to-date |
Metagenomics |
Sequence annotation, Taxonomic classification |
Sequence annotation, Taxonomic classification |
Sequence analysis |
Sequence analysis |
ufz |
https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/tools/genomad/ |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/genomad |
genomad |
geNomad |
geNomad is a tool that identifies virus and plasmid genomes from nucleotide sequences. It provides state-of-the-art classification performance and can be used to quickly find mobile genetic elements from genomes, metagenomes, or metatranscriptomes. |
|
1 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
42 |
42 |
1658 |
1658 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1658 |
1658 |
42 |
42 |
https://usegalaxy.eu/published/workflow?id=36de05d50c703164 |
|
|
get_reference_fasta |
get_fasta_reference |
Obtain reference genome sequence. |
2015-06-17 |
http://artbio.fr |
0.3.2 |
|
|
To update |
Data Source, Fasta Manipulation |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/get_reference_fasta |
https://github.com/ARTbio/tools-artbio/tree/main/tools/get_reference_fasta |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
gettn5extendedcoverage |
getTn5ExtendedCoverage |
Take an input bam from ATAC-seq and generate a bedgraph using the center of the Tn5 insertion with an extension |
2018-06-13 |
|
0.0.2 |
pysam |
0.23.3 |
To update |
Epigenetics |
|
|
|
|
lldelisle |
|
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/getTn5ExtendedCoverage |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
gffcompare_to_bed |
gffcompare_to_bed |
Filter and convert a gffCompare GTF to BED |
2018-01-10 |
https://github.com/gpertea/gffcompare/ |
0.2.1 |
python |
|
To update |
Convert Formats |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/gffcompare_to_bed |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/gffcompare_to_bed |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
337 |
365 |
1314 |
2282 |
406 |
406 |
1153 |
1153 |
71 |
71 |
566 |
566 |
0 |
0 |
0 |
0 |
4001 |
3033 |
842 |
814 |
https://dev.workflowhub.eu/workflows/1042?version=1, https://dev.workflowhub.eu/workflows/1201?version=2, https://dev.workflowhub.eu/workflows/1386?version=1, https://dev.workflowhub.eu/workflows/1398?version=1, https://usegalaxy.eu/published/workflow?id=17916f0229e3c868, https://usegalaxy.eu/published/workflow?id=39afbf843b5513bf, https://usegalaxy.eu/published/workflow?id=3a8150c81b90a3a7, https://usegalaxy.eu/published/workflow?id=6e6cf59bfeb938bf, https://usegalaxy.eu/published/workflow?id=a2f36d4dd48d8ec2, https://usegalaxy.eu/published/workflow?id=a7638e7f908fd90d, https://usegalaxy.org.au/published/workflow?id=0ebaaecf61dfc921, https://usegalaxy.org.au/published/workflow?id=157e7614ae18849b, https://usegalaxy.org.au/published/workflow?id=7cd4fcc8e06ce4fd, https://usegalaxy.org/published/workflow?id=6a3e47124e32e260, https://usegalaxy.org/published/workflow?id=e336bca259abd474, https://workflowhub.eu/workflows/1407?version=1, https://workflowhub.eu/workflows/1437?version=1, https://workflowhub.eu/workflows/1788?version=1 |
proteomics/neoantigen-non-reference-database-generation, proteomics/proteogenomics-dbcreation |
|
grb_detection_astro_tool |
grb_detection_astro_tool |
SPI-ACS GRB detection |
2025-08-13 |
|
0.0.1+galaxy0 |
numpy |
|
To update |
Astronomy |
|
|
|
|
astroteam |
https://github.com/esg-epfl-apc/tools-astro/tree/main/tools |
https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/grb-detection |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
gromacs |
gmx_check, gmx_editconf, gmx_energy, gmx_get_builtin_file, gmx_rg, gmx_makendx, gmx_merge_topology_files, gmx_em, gmx_restraints, gmx_rmsd, gmx_rmsf, gmx_setup, gmx_sim, gmx_solvate, gmx_trj |
GROMACS is a package for performing molecular dynamics, primarily designed for biochemical molecules such as proteins, lipids and nucleic acids. |
2018-10-03 |
https://github.com/gromacs |
2022 |
gromacs |
2021.3 |
To update |
Molecular Dynamics, Computational chemistry |
|
|
|
|
chemteam |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/gromacs |
|
|
|
|
14 |
8 |
15 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
15 |
9 |
0 |
760 |
783 |
186315 |
191332 |
420 |
420 |
11409 |
11409 |
152 |
152 |
12212 |
12212 |
0 |
0 |
0 |
0 |
214953 |
209936 |
1355 |
1332 |
https://dev.workflowhub.eu/workflows/1062?version=1, https://dev.workflowhub.eu/workflows/1130?version=2, https://dev.workflowhub.eu/workflows/1134?version=1, https://usegalaxy.eu/published/workflow?id=07e1478df88a17cc, https://usegalaxy.eu/published/workflow?id=092d01f759659e6b, https://usegalaxy.eu/published/workflow?id=1b10ece62e745125, https://usegalaxy.eu/published/workflow?id=2a1b21d39ebb6e49, https://usegalaxy.eu/published/workflow?id=3729015f676693c8, https://usegalaxy.eu/published/workflow?id=3c6ff60d1d3ceb3d, https://usegalaxy.eu/published/workflow?id=5d793801998146bc, https://usegalaxy.eu/published/workflow?id=7969bdac8adb8810, https://usegalaxy.eu/published/workflow?id=843c10c447496280, https://usegalaxy.eu/published/workflow?id=84c95f31896213fd, https://usegalaxy.eu/published/workflow?id=abd1cb3457338eb5, https://usegalaxy.eu/published/workflow?id=ac84daeb82d76e1c, https://usegalaxy.eu/published/workflow?id=adc6d049e9283789, https://usegalaxy.eu/published/workflow?id=b51b2f4950d26b07, https://usegalaxy.eu/published/workflow?id=bf99d06567288766, https://usegalaxy.eu/published/workflow?id=c39a79bb45b2566e, https://usegalaxy.eu/published/workflow?id=d1357759d0962144, https://usegalaxy.eu/published/workflow?id=d4d8e907e26c8587, https://usegalaxy.eu/published/workflow?id=d873ff816f028d4f, https://usegalaxy.eu/published/workflow?id=d91e715b5e3457d3, https://usegalaxy.eu/published/workflow?id=e0dddc2579c3614e, https://usegalaxy.eu/published/workflow?id=e3b0b521ee8f2aef, https://usegalaxy.eu/published/workflow?id=e73beff62f35d677, https://usegalaxy.eu/published/workflow?id=fb425d6accf3ca55, https://usegalaxy.org.au/published/workflow?id=28cf646b95e4d3ab, https://usegalaxy.org.au/published/workflow?id=5add59b908662af0, https://usegalaxy.org.au/published/workflow?id=8a20b3ed4a81263d, https://usegalaxy.org/published/workflow?id=00a4dbc9329c638b, https://usegalaxy.org/published/workflow?id=0fb89e9c397c8938, https://usegalaxy.org/published/workflow?id=183254b3565bcb04, https://usegalaxy.org/published/workflow?id=195a608c481040de, https://usegalaxy.org/published/workflow?id=28c7e8269d478244, https://usegalaxy.org/published/workflow?id=3c1e2bbb1a77cc30, https://usegalaxy.org/published/workflow?id=442a2868873e7f77, https://usegalaxy.org/published/workflow?id=634bbef1f67a0e30, https://usegalaxy.org/published/workflow?id=a638e12411586555, https://usegalaxy.org/published/workflow?id=aaec757e04605d3a, https://usegalaxy.org/published/workflow?id=ad19db6504b6dc33, https://usegalaxy.org/published/workflow?id=d2b994833b79d2cb, https://workflowhub.eu/workflows/1645?version=1, https://workflowhub.eu/workflows/1686?version=1, https://workflowhub.eu/workflows/1689?version=1, https://workflowhub.eu/workflows/247?version=2, https://workflowhub.eu/workflows/248?version=4, https://workflowhub.eu/workflows/249?version=4, https://workflowhub.eu/workflows/761?version=1, https://workflowhub.eu/workflows/762?version=1, https://workflowhub.eu/workflows/763?version=1, https://workflowhub.eu/workflows/764?version=1 |
computational-chemistry/htmd-analysis, computational-chemistry/md-simulation-gromacs |
|
gsc_center_scale |
center_scale |
Center or scale (standardize) data |
2019-07-09 |
http://artbio.fr |
4.3.1+galaxy1 |
r-optparse |
1.3.2 |
To update |
Statistics, Single Cell |
RNA-Seq analysis, Clustering, Visualisation, Expression analysis |
RNA-Seq analysis, Clustering, Visualisation |
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/gsc_center_scale |
https://github.com/ARTbio/tools-artbio/tree/main/tools/gsc_center_scale |
galaxy_single_cell_suite |
Galaxy Single Cell suite |
Suite of Galaxy tools from artbio.fr for end-to-end single-cell RNA-seq analysis |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
gsc_filter_cells |
filter_cells |
Filter single cell RNAseq data on library depth and number of detected genes |
2019-06-23 |
http://artbio.fr |
4.3.1+galaxy1 |
r-optparse |
1.3.2 |
To update |
Transcriptomics, Single Cell |
RNA-Seq analysis, Clustering, Visualisation, Expression analysis |
RNA-Seq analysis, Clustering, Visualisation |
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/gsc_filter_cells |
https://github.com/ARTbio/tools-artbio/tree/main/tools/gsc_filter_cells |
galaxy_single_cell_suite |
Galaxy Single Cell suite |
Suite of Galaxy tools from artbio.fr for end-to-end single-cell RNA-seq analysis |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
gsc_filter_genes |
filter_genes |
Filter genes that are detected in less than a fraction of libraries in single cell RNAseq data |
2019-06-23 |
http://artbio.fr |
4.3.1+galaxy1 |
r-optparse |
1.3.2 |
To update |
Transcriptomics, Single Cell |
RNA-Seq analysis, Clustering, Visualisation, Expression analysis |
RNA-Seq analysis, Clustering, Visualisation |
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/gsc_filter_genes |
https://github.com/ARTbio/tools-artbio/tree/main/tools/gsc_filter_genes |
galaxy_single_cell_suite |
Galaxy Single Cell suite |
Suite of Galaxy tools from artbio.fr for end-to-end single-cell RNA-seq analysis |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
gsc_gene_expression_correlations |
single_cell_gene_expression_correlations |
Compute single-cell paire-wise gene expressions correlations |
2019-06-24 |
http://artbio.fr |
4.3.1+galaxy1 |
r-optparse |
1.3.2 |
To update |
Transcriptomics, Single Cell |
RNA-Seq analysis, Clustering, Visualisation, Expression analysis |
RNA-Seq analysis, Clustering, Visualisation |
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/master/tools/gsc_gene_expression_correlations |
https://github.com/ARTbio/tools-artbio/tree/main/tools/gsc_gene_expression_correlations |
galaxy_single_cell_suite |
Galaxy Single Cell suite |
Suite of Galaxy tools from artbio.fr for end-to-end single-cell RNA-seq analysis |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
gsc_high_dimensions_visualisation |
high_dimensions_visualisation |
Generates PCA, t-SNE and HCPC visualisation |
2019-06-23 |
http://artbio.fr |
4.3+galaxy1 |
r-optparse |
1.3.2 |
To update |
Transcriptomics, Visualization, Single Cell |
RNA-Seq analysis, Clustering, Visualisation, Expression analysis |
RNA-Seq analysis, Clustering, Visualisation |
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/gsc_high_dimension_visualization |
https://github.com/ARTbio/tools-artbio/tree/main/tools/gsc_high_dimensions_visualisation |
galaxy_single_cell_suite |
Galaxy Single Cell suite |
Suite of Galaxy tools from artbio.fr for end-to-end single-cell RNA-seq analysis |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
gsc_mannwhitney_de |
mannwhitney_de |
Perform a mann-whitney differential testing between two sets of gene expression data |
2019-06-23 |
http://artbio.fr |
4.1.3+galaxy1 |
r-optparse |
1.3.2 |
To update |
Transcriptomics, Single Cell |
RNA-Seq analysis, Clustering, Visualisation, Expression analysis |
RNA-Seq analysis, Clustering, Visualisation |
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/gsc_mannwhitney_de |
https://github.com/ARTbio/tools-artbio/tree/main/tools/gsc_mannwhitney_de |
galaxy_single_cell_suite |
Galaxy Single Cell suite |
Suite of Galaxy tools from artbio.fr for end-to-end single-cell RNA-seq analysis |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
gsc_scran_normalize |
scran_normalize |
Normalize raw counts using scran |
2019-09-23 |
http://artbio.fr |
1.28.1+galaxy1 |
bioconductor-scran |
1.34.0 |
To update |
Transcriptomics, Single Cell |
RNA-Seq analysis, Clustering, Visualisation, Expression analysis |
RNA-Seq analysis, Clustering, Visualisation |
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/gsc_scran_normalize |
https://github.com/ARTbio/tools-artbio/tree/main/tools/gsc_scran_normalize |
galaxy_single_cell_suite |
Galaxy Single Cell suite |
Suite of Galaxy tools from artbio.fr for end-to-end single-cell RNA-seq analysis |
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
27 |
27 |
106 |
106 |
13 |
13 |
322 |
322 |
4 |
4 |
80 |
80 |
0 |
0 |
0 |
0 |
508 |
508 |
44 |
44 |
|
|
|
gsc_signature_score |
signature_score |
Compute signature scores from single cell RNAseq data |
2019-06-23 |
http://artbio.fr |
2.3.9+galaxy1 |
r-optparse |
1.3.2 |
To update |
Transcriptomics, Single Cell |
RNA-Seq analysis, Clustering, Visualisation, Expression analysis |
RNA-Seq analysis, Clustering, Visualisation |
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/gsc_signature_score |
https://github.com/ARTbio/tools-artbio/tree/main/tools/gsc_signature_score |
galaxy_single_cell_suite |
Galaxy Single Cell suite |
Suite of Galaxy tools from artbio.fr for end-to-end single-cell RNA-seq analysis |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
gtf2gene_list |
_ensembl_gtf2gene_list |
Utility to extract annotations from Ensembl GTF files. |
2019-11-07 |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary |
1.52.0+galaxy0 |
atlas-gene-annotation-manipulation |
1.1.1 |
To update |
Sequence Analysis |
|
|
|
|
ebi-gxa |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/gtf-2-gene-list/.shed.yml |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/gtf-2-gene-list |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
401 |
405 |
2304 |
2321 |
391 |
391 |
1173 |
1173 |
42 |
42 |
240 |
240 |
0 |
0 |
0 |
0 |
3734 |
3717 |
838 |
834 |
https://dev.workflowhub.eu/workflows/1024?version=1, https://dev.workflowhub.eu/workflows/1025?version=1, https://dev.workflowhub.eu/workflows/1263?version=1, https://usegalaxy.eu/published/workflow?id=1e2d27fae8a41ac1, https://usegalaxy.eu/published/workflow?id=50f8693fac7e134b, https://usegalaxy.eu/published/workflow?id=73b41b975da284d5, https://usegalaxy.eu/published/workflow?id=83ae28e23099a3f6, https://usegalaxy.eu/published/workflow?id=9a9bbd8046da7b19, https://usegalaxy.eu/published/workflow?id=aeb0f5b74e51f5c2, https://usegalaxy.eu/published/workflow?id=c6adc3b665828a6f, https://usegalaxy.eu/published/workflow?id=df455b86fff16116, https://usegalaxy.eu/published/workflow?id=e06934a35fc18f2c, https://usegalaxy.eu/published/workflow?id=e97bdba3834ac465, https://usegalaxy.eu/published/workflow?id=f944ad0c35d1a472, https://usegalaxy.org/published/workflow?id=1fe6b25825d9b736, https://usegalaxy.org/published/workflow?id=a2a924b871b1c96d, https://workflowhub.eu/workflows/1533?version=1, https://workflowhub.eu/workflows/1537?version=1 |
single-cell/scrna-case_alevin |
|
guppy_basecaller |
guppy-basecaller |
A wrapper for the guppy basecaller tool from Oxford Nanopore Technologies |
2020-11-18 |
http://artbio.fr |
6.5.7+galaxy0 |
|
|
To update |
Nanopore |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/guppy |
https://github.com/ARTbio/tools-artbio/tree/main/tools/guppy |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
7 |
7 |
0 |
0 |
0 |
0 |
7 |
7 |
1 |
1 |
|
|
|
hardklor |
hardklor, kronik |
Hardklör |
2016-04-26 |
|
2.30.1+galaxy1 |
hardklor |
2.3.2 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tools/hardklor |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/hardklor |
|
|
|
|
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
0 |
4 |
6 |
78 |
111 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
111 |
78 |
6 |
4 |
|
|
|
hess_astro_tool |
hess_astro_tool |
Basic analysis of Data Level 3 public data sample of HESS gamma-ray telescope |
2024-02-19 |
|
0.0.2+galaxy0 |
ipython |
|
To update |
Astronomy |
|
|
|
|
astroteam |
https://github.com/esg-epfl-apc/tools-astro/tree/main/tools |
https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/hess |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
1 |
1 |
https://workflowhub.eu/workflows/766?version=1 |
|
|
high_dim_heatmap |
high_dim_heatmap |
gplot heatmap.2 function adapted for plotting large heatmaps |
2019-07-20 |
https://github.com/cran/gplots |
3.1.3+galaxy0 |
r-gplots |
2.17.0 |
To update |
Visualization |
|
|
|
|
artbio |
https://github.com/artbio/tools-artbio/tree/main/tools/high_dim_heatmap |
https://github.com/ARTbio/tools-artbio/tree/main/tools/high_dim_heatmap |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
hirieftools |
calc_delta_pi, pi_db_split, pi_dbspec_align |
HiRIEF tools |
2017-04-11 |
|
1.3 |
python |
|
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tools/pi_db_tools |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pi_db_tools |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
hirondelle_crim_ogc_api_processes |
hirondelle_crim |
This tool is a wrapper for OGC API Processes coming from https://osf.io/gfbws/. |
2024-06-07 |
https://github.com/AquaINFRA/galaxy |
0.2.0 |
r-base |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/hirondelle_crim_ogc_api_processes |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
236 |
236 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
236 |
236 |
3 |
3 |
https://usegalaxy.eu/published/workflow?id=6173008772bdba09, https://usegalaxy.eu/published/workflow?id=b1fa4a3561988704 |
|
|
hyperstack_to_bleach_corrected_movie |
hyperstack_to_bleach_corrected_movie |
Generate blach corrected movie from hyperstack |
2023-02-27 |
|
20241220 |
Fiji |
20250206 |
To update |
Imaging |
|
|
|
|
lldelisle |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/hyperstack_to_bleach_corrected_movie |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/hyperstack_to_bleach_corrected_movie |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
idconvert |
idconvert |
Convert mass spectrometry identification files on linux or MacOSX |
2019-02-22 |
|
|
proteowizard |
3_0_9992 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/idconvert |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
21 |
33 |
197 |
277 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
277 |
197 |
33 |
21 |
|
|
|
iedb_netmhcpan |
iedb_netmhciipan, iedb_netmhcpan |
Predict binding of peptides to any MHC or MHC II molecule of known sequence using artificial neural networks |
2025-07-09 |
http://tools.immuneepitope.org/main/tools-api/ |
4.1+galaxy0 |
|
|
To update |
Data Source, Sequence Analysis |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/iedb_netmhcpan |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/iedb_netmhcpan |
|
|
|
|
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
incucyte_stack_and_upload_omero |
incucyte_stack_and_upload_omero |
Combine images to stack and upload to the omero server |
2023-02-17 |
|
20231221 |
Fiji |
20250206 |
To update |
Imaging |
|
|
|
|
lldelisle |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/incucyte_stack_and_upload_omero |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/incucyte_stack_and_upload_omero |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
interpolation |
interpolation_run_idw_interpolation |
Run IDW interpolation based on a .csv and .geojson file |
2024-01-05 |
https://github.com/AquaINFRA/galaxy |
1.0 |
r-getopt |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/interpolation |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/interpolation |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 |
7 |
70 |
70 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
70 |
70 |
7 |
7 |
https://usegalaxy.eu/published/workflow?id=0b2304aa2083bd1a, https://workflowhub.eu/workflows/807?version=1 |
|
|
ipaPy2 |
ipapy2_MS1_annotation, ipapy2_MS2_annotation, ipapy2_clustering, ipapy2_compute_all_adducts, ipapy2_compute_bio, ipapy2_gibbs_sampler, ipapy2_gibbs_sampler_add, ipapy2_map_isotope_patterns |
Mass spectrometry data annotation tool. |
2023-12-04 |
https://github.com/francescodc87/ipaPy2 |
1.3.0 |
ipapy2 |
1.3.0 |
Up-to-date |
Metabolomics |
|
|
|
|
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/ipapy2 |
https://github.com/RECETOX/galaxytools/tree/master/tools/ipapy2 |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
iphop |
iphop_predict |
Integrated Phage Host Prediction |
2024-10-14 |
https://bitbucket.org/srouxjgi/iphop/ |
1.3.3 |
iphop |
1.4.1 |
To update |
Metagenomics |
Sample comparison |
Sample comparison |
|
|
ufz |
https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/tools/iphop/ |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/iphop |
iphop |
iPHoP |
An automated command-line pipeline for predicting host genus of novel bacteriophages and archaeoviruses based on their genome sequences. |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
isolib |
isolib |
Create an isotopic pattern library for given compounds and adducts. |
2023-10-26 |
https://github.com/RECETOX/galaxytools/ |
2.6+galaxy3 |
bioconductor-metabocoreutils |
1.14.0 |
To update |
Metabolomics |
|
|
|
|
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/isolib |
https://github.com/RECETOX/galaxytools/tree/master/tools/isolib |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
3 |
3 |
0 |
0 |
0 |
0 |
1 |
1 |
60 |
60 |
0 |
0 |
0 |
0 |
63 |
63 |
3 |
3 |
|
|
|
justdiff |
justdiff |
Unix diff |
2017-09-27 |
http://artbio.fr |
3.10+galaxy0 |
diffutils |
|
To update |
Text Manipulation |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/justdiff |
https://github.com/ARTbio/tools-artbio/tree/main/tools/justdiff |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
justgzip |
justgzip |
Compress fastq sequence files |
2018-05-16 |
http://artbio.fr |
2.8+galaxy0 |
pigz |
|
To update |
Convert Formats |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/justgzip |
https://github.com/ARTbio/tools-artbio/tree/main/tools/justgzip |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
20 |
20 |
20 |
20 |
1 |
1 |
|
|
|
lambdaminer |
lm_get_projects |
Lambda-Miner Tools |
2025-03-06 |
https://lambda-miner-project.pages.ufz.de/lambda-miner-workflows/ |
0.1.0+galaxy0 |
pandas |
|
To update |
Web Services, Data Source |
|
|
|
|
ufz |
https://github.com/jw44lavo/galaxy-tools/blob/bgo/tools/lambdaminer/ |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/lambdaminer |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
lfq_protein_quant |
lfq_protein_quant |
Enable protein summarisation and quantitation |
2018-10-02 |
https://github.com/compomics/LFQ_galaxy_p |
1.0 |
bioconductor-msnbase |
2.32.0 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/lfq_protein_quant |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/lfq_protein_quant |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
12 |
19 |
70 |
116 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
116 |
70 |
19 |
12 |
|
|
|
longorf |
longORF |
obtain longest ORF in six-frame translations |
2018-06-01 |
|
0.3.0 |
|
|
To update |
Sequence Analysis |
|
|
|
|
mbernt |
https://github.com/bernt-matthias/mb-galaxy-tools/blob/master/tools/longorf/ |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/longorf |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
ltq_iquant_cli |
|
|
2015-01-24 |
|
|
|
|
To update |
|
|
|
|
|
galaxyp |
|
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ltq_iquant_cli |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
lumpy_smoove |
lumpy_smoove, vcf2hrdetect |
Galaxy wrapper of the lumpy-using smoove workflow |
2020-07-12 |
http://artbio.fr |
0.2.8+galaxy1 |
svtyper |
0.7.1 |
To update |
Variant Analysis |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/lumpy_smoove |
https://github.com/ARTbio/tools-artbio/tree/main/tools/lumpy_smoove |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
lumpy_sv |
lumpy |
Find structural variations |
2017-07-24 |
http://artbio.fr |
1.3 |
lumpy-sv |
0.3.1 |
To update |
Variant Analysis |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_sv |
https://github.com/ARTbio/tools-artbio/tree/main/tools/lumpy_sv |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
make_nr |
make_nr |
Make a FASTA file non-redundant |
2018-11-06 |
https://github.com/peterjc/galaxy_blast/tree/master/tools/make_nr |
0.0.3 |
biopython |
1.70 |
To update |
Fasta Manipulation, Sequence Analysis |
Sequence alignment, Genome annotation |
Sequence alignment, Genome annotation |
Molecular biology, Sequence analysis |
Molecular biology, Sequence analysis |
peterjc |
https://github.com/peterjc/galaxy_blast/tree/master/tools/make_nr |
https://github.com/peterjc/galaxy_blast/tree/master/tools/make_nr |
make_nr |
make_nr |
Make a FASTA file non-redundant, with a Galaxy wrapperThis tool is copyright 2018 by Peter Cock, The James Hutton Institute, UK. All rights reserved.This tool is a short Python script intended to be run prior to calling the NCBI BLAST+ command line tool makeblastdb or in other settings where you want to collapse duplicated sequences in a FASTA file to a single representative. |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
manta |
manta |
Structural variant and indel caller for mapped sequencing data |
2019-10-25 |
http://artbio.fr |
1.6 |
manta |
1.6.0 |
To update |
Variant Analysis |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/master/tools/manta |
https://github.com/ARTbio/tools-artbio/tree/main/tools/manta |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
53 |
53 |
568 |
568 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
568 |
568 |
53 |
53 |
|
|
|
map_peptides_to_bed |
map_peptides_to_bed |
Map peptides to a reference genome for display by a genome browser |
2016-01-13 |
|
0.2 |
biopython |
1.70 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/map_peptides_to_bed |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/map_peptides_to_bed |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
8 |
9 |
33 |
46 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
46 |
33 |
9 |
8 |
|
|
|
mapping_quality_stats |
mapqstatistics |
Collects and shows the distribution of MAPQ values in a BAM alignment file |
2022-06-15 |
http://artbio.fr |
0.22.0 |
r-optparse |
1.3.2 |
To update |
Sequence Analysis, Statistics |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/mapping_quality_stats |
https://github.com/ARTbio/tools-artbio/tree/main/tools/mapping_quality_stats |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
marine_omics |
sanntis_marine |
The Sanntis tool identify biosynthetic gene clusters (BGCs) in genomic & metagenomic data |
2024-07-26 |
https://github.com/Finn-Lab/SanntiS |
0.9.3.5 |
sanntis |
0.9.4.1 |
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/marine_omics |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/marine_omics |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 |
7 |
67 |
67 |
0 |
0 |
0 |
0 |
2 |
2 |
42 |
42 |
0 |
0 |
0 |
0 |
109 |
109 |
9 |
9 |
https://dev.workflowhub.eu/workflows/1357?version=1, https://usegalaxy.eu/published/workflow?id=a448400f69594135, https://usegalaxy.eu/published/workflow?id=b9c938d1af08124b, https://usegalaxy.eu/published/workflow?id=cc59ae1a9878942c, https://workflowhub.eu/workflows/1663?version=1 |
ecology/marine_omics_bgc |
|
matchms |
matchms_add_key, matchms_convert, matchms_matchms_export_skyline_transition_list, matchms_filtering, matchms_fingerprint_similarity, matchms_formatter, matchms_metadata_export, matchms_metadata_match, matchms_metadata_merge, matchms_networking, matchms_remove_key, matchms_remove_spectra, matchms_spectral_similarity, matchms_split, matchms_subsetting |
Searching, filtering and converting mass spectral libraries. |
2020-11-16 |
https://github.com/matchms/matchms |
0.30.2 |
matchms |
0.30.2 |
Up-to-date |
Metabolomics |
Spectral library search, Format validation, Filtering |
Spectral library search, Format validation, Filtering |
Metabolomics |
Metabolomics |
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/matchms |
https://github.com/RECETOX/galaxytools/tree/master/tools/matchms |
matchms |
Matchms |
Tool to import, process, clean, and compare mass spectrometry data. |
|
2 |
14 |
14 |
11 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
9 |
0 |
0 |
21 |
21 |
1699 |
1699 |
5 |
5 |
28 |
28 |
5 |
5 |
2754 |
2754 |
24 |
24 |
305 |
305 |
4786 |
4786 |
55 |
55 |
https://dev.workflowhub.eu/workflows/1119?version=2, https://usegalaxy.eu/published/workflow?id=3086366b744e8da9, https://usegalaxy.eu/published/workflow?id=3358c516f5412e92, https://usegalaxy.fr/published/workflow?id=1407c1703f360f07, https://workflowhub.eu/workflows/1582?version=1, https://workflowhub.eu/workflows/888?version=2 |
metabolomics/gc_ms_with_xcms |
|
max_projections_stack_and_upload_omero |
max_projections_stack_and_upload_omero |
Combine images from max projections to stack and upload to the omero server |
2024-12-12 |
|
20241213.2 |
Fiji |
20250206 |
To update |
Imaging |
|
|
|
|
lldelisle |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/max_projections_stack_and_upload_omero |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/max_projections_stack_and_upload_omero |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
maxquant |
maxquant, maxquant_mqpar |
wrapper for MaxQuant |
2015-01-24 |
https://www.maxquant.org/ |
2.0.3.0 |
maxquant |
2.0.3.0 |
Up-to-date |
Proteomics |
Imputation, Visualisation, Protein quantification, Statistical calculation, Standardisation and normalisation, Heat map generation, Clustering, Principal component plotting |
Imputation, Visualisation, Protein quantification, Standardisation and normalisation, Heat map generation, Clustering |
Proteomics experiment, Proteomics, Statistics and probability |
Proteomics experiment, Proteomics, Statistics and probability |
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant |
maxquant |
MaxQuant |
Quantitative proteomics software package designed for analyzing large mass-spectrometric data sets. It is specifically aimed at high-resolution MS data. |
|
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
1508 |
1531 |
7822 |
8085 |
636 |
636 |
3257 |
3257 |
337 |
337 |
3472 |
3472 |
0 |
0 |
0 |
0 |
14814 |
14551 |
2504 |
2481 |
https://dev.workflowhub.eu/workflows/1026?version=1, https://dev.workflowhub.eu/workflows/1039?version=1, https://dev.workflowhub.eu/workflows/1140?version=2, https://dev.workflowhub.eu/workflows/1224?version=2, https://dev.workflowhub.eu/workflows/1227?version=2, https://dev.workflowhub.eu/workflows/1240?version=1, https://dev.workflowhub.eu/workflows/1353?version=1, https://dev.workflowhub.eu/workflows/1354?version=1, https://dev.workflowhub.eu/workflows/1368?version=1, https://dev.workflowhub.eu/workflows/1369?version=1, https://usegalaxy.eu/published/workflow?id=0135ee4b3fa0cbce, https://usegalaxy.eu/published/workflow?id=41e9882300fa2386, https://usegalaxy.eu/published/workflow?id=607ca3a9d45bd080, https://usegalaxy.eu/published/workflow?id=8af41219411062ad, https://usegalaxy.eu/published/workflow?id=912b81c444e35045, https://usegalaxy.eu/published/workflow?id=96d198ed953449fd, https://usegalaxy.eu/published/workflow?id=9e0d784860d6cc91, https://usegalaxy.eu/published/workflow?id=a49275eb8b2b2ecb, https://usegalaxy.eu/published/workflow?id=c4119ea7ffd29094, https://usegalaxy.eu/published/workflow?id=d789165f4e0c50eb, https://usegalaxy.eu/published/workflow?id=eb54512829d8509c, https://usegalaxy.org.au/published/workflow?id=1727d16fa4dec19c, https://usegalaxy.org.au/published/workflow?id=43a951ec514498f6, https://usegalaxy.org.au/published/workflow?id=781457327e644c7e, https://usegalaxy.org.au/published/workflow?id=b0a79310e0dc3fb4, https://usegalaxy.org.au/published/workflow?id=ba217a34d7e1b5ee, https://usegalaxy.org/published/workflow?id=2404d5e5b1817825, https://usegalaxy.org/published/workflow?id=e97da2da9e0290a7, https://workflowhub.eu/workflows/1177?version=1, https://workflowhub.eu/workflows/1225?version=1, https://workflowhub.eu/workflows/1396?version=1, https://workflowhub.eu/workflows/1401?version=1, https://workflowhub.eu/workflows/1420?version=1, https://workflowhub.eu/workflows/1421?version=1, https://workflowhub.eu/workflows/1435?version=1, https://workflowhub.eu/workflows/1448?version=1, https://workflowhub.eu/workflows/1468?version=1 |
microbiome/clinical-mp-2-discovery, microbiome/clinical-mp-4-quantitation, proteomics/DIA_lib_OSW, proteomics/clinical-mp-2-discovery, proteomics/clinical-mp-4-quantitation, proteomics/maxquant-label-free, proteomics/maxquant-msstats-dda-lfq, proteomics/maxquant-msstats-tmt |
|
md_converter |
md_converter |
A tool for interconverting between different MD structure and trajectory file formats. |
2018-10-13 |
|
1.9.7 |
mdtraj |
|
To update |
Molecular Dynamics, Computational chemistry |
|
|
|
|
chemteam |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tools/mdfileconverter |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/mdfileconverter |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
294 |
298 |
27209 |
27307 |
59 |
59 |
809 |
809 |
62 |
62 |
1129 |
1129 |
0 |
0 |
0 |
0 |
29245 |
29147 |
419 |
415 |
https://dev.workflowhub.eu/workflows/1062?version=1, https://usegalaxy.eu/published/workflow?id=07e1478df88a17cc, https://usegalaxy.eu/published/workflow?id=092d01f759659e6b, https://usegalaxy.eu/published/workflow?id=3c6ff60d1d3ceb3d, https://usegalaxy.eu/published/workflow?id=843c10c447496280, https://usegalaxy.eu/published/workflow?id=abd1cb3457338eb5, https://usegalaxy.org.au/published/workflow?id=5add59b908662af0, https://usegalaxy.org/published/workflow?id=0fb89e9c397c8938, https://usegalaxy.org/published/workflow?id=183254b3565bcb04, https://usegalaxy.org/published/workflow?id=3c1e2bbb1a77cc30, https://usegalaxy.org/published/workflow?id=442a2868873e7f77, https://usegalaxy.org/published/workflow?id=ad19db6504b6dc33, https://workflowhub.eu/workflows/1689?version=1, https://workflowhub.eu/workflows/248?version=4 |
computational-chemistry/htmd-analysis, computational-chemistry/med-chem-data, fair/med-chem-data |
|
md_converter |
md_slicer |
A tool for slicing trajectory files using MDTraj. |
2019-10-07 |
|
1.9.9 |
mdtraj |
|
To update |
Molecular Dynamics, Computational chemistry |
|
|
|
|
chemteam |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tools/mdslicer |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/mdslicer |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
19 |
20 |
157 |
177 |
4 |
4 |
6 |
6 |
7 |
7 |
483 |
483 |
0 |
0 |
0 |
0 |
666 |
646 |
31 |
30 |
|
|
|
mdanalysis |
mdanalysis_angle, mdanalysis_dihedral, mdanalysis_distance, mdanalysis_endtoend, mdanalysis_extract_rmsd, mdanalysis_hbonds, mdanalysis_cosine_analysis, mdanalysis_ramachandran_protein, mdanalysis_ramachandran_plot, mdanalysis_rdf |
MDAnalysis is a package for analyzing trajectories from molecular dynamics (MD) simulations |
2018-10-04 |
https://github.com/MDAnalysis/mdanalysis |
1.0.0 |
mdanalysis |
|
To update |
Computational chemistry |
|
|
|
|
chemteam |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/mdanalysis |
|
|
|
|
10 |
5 |
10 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
10 |
10 |
0 |
167 |
167 |
3176 |
3390 |
25 |
25 |
197 |
197 |
38 |
38 |
614 |
614 |
0 |
0 |
0 |
0 |
4201 |
3987 |
230 |
230 |
https://dev.workflowhub.eu/workflows/1062?version=1, https://dev.workflowhub.eu/workflows/1126?version=1, https://usegalaxy.eu/published/workflow?id=092d01f759659e6b, https://usegalaxy.eu/published/workflow?id=b47e415f80941ba0, https://usegalaxy.org.au/published/workflow?id=5add59b908662af0, https://workflowhub.eu/workflows/1689?version=1, https://workflowhub.eu/workflows/1694?version=1 |
computational-chemistry/analysis-md-simulations, computational-chemistry/htmd-analysis |
|
mdtraj |
traj_selections_and_merge |
MDTraj is a python library that allows users to manipulate molecular dynamics (MD) trajectories |
2020-06-24 |
https://github.com/mdtraj/mdtraj |
1.9.7 |
mdtraj |
|
To update |
Computational chemistry |
|
|
|
|
chemteam |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/ |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/mdtraj |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
8 |
8 |
36 |
36 |
4 |
4 |
63 |
63 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
99 |
99 |
12 |
12 |
|
|
|
mean_per_zone |
mean_per_zone |
Creates a png image showing statistic over areas as defined in the vector file |
2019-03-15 |
https://github.com/NordicESMhub/galaxy-tools/blob/master/tools/mean-per-zone/ |
0.2.0 |
python |
|
To update |
Visualization, GIS, Climate Analysis |
|
|
|
|
climate |
https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/mean-per-zone |
https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/mean-per-zone |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
2 |
3 |
12 |
25 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
25 |
12 |
3 |
2 |
|
|
|
measure_gastruloids |
measureGastruloids |
Get the ROI coordinates around the gastruloids as well as measurements like Area, elongation index |
2022-01-18 |
|
20221216 |
fiji |
20250206 |
To update |
Imaging |
|
|
|
|
lldelisle |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/measure_gastruloids |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/measure_gastruloids |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
medenv |
iabiodiv_smartbiodiv_med_environ |
Retrieve environmental data from etopo, cmems and woa |
2023-11-30 |
https://github.com/jeremyfix/medenv |
0.1.0 |
pandas |
|
To update |
Ecology, Data Source |
|
|
|
|
ecology |
https://github.com/jeremyfix/medenv |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/medenv |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
11 |
34 |
34 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
34 |
34 |
11 |
11 |
|
|
|
meta_proteome_analyzer |
meta_proteome_analyzer |
MetaProteomeAnalyzer |
2017-03-03 |
https://github.com/compomics/meta-proteome-analyzer/ |
2.0.0 |
mpa-portable |
2.0.0 |
Up-to-date |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/meta_proteome_analyzer |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/meta_proteome_analyzer |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
21 |
21 |
142 |
142 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
142 |
142 |
21 |
21 |
|
|
|
metagene_annotator |
metagene_annotator |
MetaGeneAnnotator gene-finding program for prokaryote and phage |
2018-03-21 |
http://metagene.nig.ac.jp/ |
1.0 |
metagene_annotator |
1.0 |
Up-to-date |
Sequence Analysis |
Sequence annotation |
Sequence annotation |
Genomics, Model organisms, Data submission, annotation and curation |
Genomics, Model organisms, Data submission, annotation and curation |
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/metagene_annotator |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metagene_annotator |
metageneannotator |
MetaGeneAnnotator |
Prokaryotic gene finding program from environmental genome shotgun sequences or metagenomic sequences. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
379 |
379 |
1198 |
1198 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1198 |
1198 |
379 |
379 |
https://usegalaxy.eu/published/workflow?id=3dcf09e75d707573, https://usegalaxy.eu/published/workflow?id=799b924edd3c401b, https://usegalaxy.eu/published/workflow?id=9b9e1e28f3683f92, https://usegalaxy.eu/published/workflow?id=c0f225536e78a178 |
|
|
metanovo |
metanovo |
Produce targeted databases for mass spectrometry analysis. |
2022-03-29 |
https://github.com/uct-cbio/proteomics-pipelines |
1.9.4 |
metanovo |
1.9.4 |
Up-to-date |
Proteomics |
Target-Decoy, de Novo sequencing, Tag-based peptide identification, Protein identification, Expression analysis |
Target-Decoy, de Novo sequencing, Tag-based peptide identification, Protein identification, Expression analysis |
Proteomics, Microbial ecology, Metagenomics, Proteomics experiment, Small molecules |
Proteomics, Microbial ecology, Metagenomics, Proteomics experiment, Small molecules |
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metanovo |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metanovo |
metanovo |
MetaNovo |
An open-source pipeline for probabilistic peptide discovery in complex metaproteomic datasets. |
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
37 |
37 |
4908 |
4908 |
1 |
1 |
6 |
6 |
3 |
3 |
42 |
42 |
0 |
0 |
0 |
0 |
4956 |
4956 |
41 |
41 |
https://dev.workflowhub.eu/workflows/1350?version=1, https://dev.workflowhub.eu/workflows/1370?version=1, https://usegalaxy.eu/published/workflow?id=2f7e13eb26c8cd18, https://usegalaxy.eu/published/workflow?id=7cfbf4b7bd3f30d3, https://usegalaxy.eu/published/workflow?id=c6aecbdbeb27585f, https://usegalaxy.eu/published/workflow?id=d7c7a4d6c8072167, https://usegalaxy.eu/published/workflow?id=f2b45a7ff4f449e6, https://usegalaxy.org.au/published/workflow?id=351f3fab960c013b, https://usegalaxy.org/published/workflow?id=2be8ecd5922d23d1, https://workflowhub.eu/workflows/1216?version=1, https://workflowhub.eu/workflows/1461?version=1, https://workflowhub.eu/workflows/1474?version=1 |
microbiome/clinical-mp-1-database-generation, proteomics/clinical-mp-1-database-generation |
|
metaquantome |
metaquantome_db, metaquantome_expand, metaquantome_filter, metaquantome_sample, metaquantome_stat, metaquantome_viz |
quantitative analysis of microbiome taxonomy and function |
2018-11-27 |
https://github.com/galaxyproteomics/metaquantome/ |
2.0.2 |
metaquantome |
2.0.2 |
Up-to-date |
Proteomics |
Principal component visualisation, Visualisation, Functional clustering, Query and retrieval, Differential protein expression analysis, Heat map generation, Quantification, Indexing, Filtering, Statistical inference |
Principal component visualisation, Functional clustering, Query and retrieval, Heat map generation, Quantification, Indexing, Filtering, Statistical inference |
Proteomics, Metatranscriptomics, Microbial ecology, Proteomics experiment, Metagenomics |
Proteomics, Metatranscriptomics, Microbial ecology, Proteomics experiment, Metagenomics |
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome |
metaQuantome |
metaQuantome |
metaQuantome software suite analyzes the state of a microbiome by leveraging complex taxonomic and functional hierarchies to summarize peptide-level quantitative information. metaQuantome offers differential abundance analysis, principal components analysis, and clustered heat map visualizations, as well as exploratory analysis for a single sample or experimental condition. |
|
0 |
6 |
6 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
6 |
6 |
0 |
80 |
82 |
2663 |
2893 |
0 |
0 |
0 |
0 |
24 |
24 |
2011 |
2011 |
0 |
0 |
0 |
0 |
4904 |
4674 |
106 |
104 |
https://dev.workflowhub.eu/workflows/1028?version=1, https://dev.workflowhub.eu/workflows/1034?version=1, https://dev.workflowhub.eu/workflows/1155?version=2, https://dev.workflowhub.eu/workflows/1221?version=2, https://usegalaxy.eu/published/workflow?id=4c364c6be27981ba, https://usegalaxy.eu/published/workflow?id=695f7defb516d80d, https://usegalaxy.eu/published/workflow?id=ce7f7c6eef526d67, https://usegalaxy.eu/published/workflow?id=dc438d4ae1866df8, https://usegalaxy.eu/published/workflow?id=e5a89ef7b5f1c1d9, https://usegalaxy.org.au/published/workflow?id=cada735fa0716570, https://usegalaxy.org.au/published/workflow?id=f8183bba3a1d150d, https://workflowhub.eu/workflows/1453?version=1, https://workflowhub.eu/workflows/1459?version=1 |
proteomics/metaquantome-function, proteomics/metaquantome-taxonomy |
|
mgf_formatter |
mgf_formatter |
|
2014-09-26 |
|
1.0.0 |
mgf-formatter |
1.0.0 |
Up-to-date |
|
|
|
|
|
galaxyp |
|
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mgf_formatter |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
mircounts |
mircounts |
Generates miRNA count lists from read alignments to mirBase. |
2017-06-12 |
http://artbio.fr |
1.6 |
tar |
|
To update |
RNA, Transcriptomics |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/master/tools/mircounts |
https://github.com/ARTbio/tools-artbio/tree/main/tools/mircounts |
|
|
|
|
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
30 |
30 |
41 |
41 |
1616 |
1616 |
0 |
0 |
0 |
0 |
1646 |
1646 |
42 |
42 |
|
|
|
misc |
target_screen, use_theoretical_mz_annotations |
|
2024-02-16 |
https://github.com/RECETOX/galaxytools |
1.0.0 |
pandas |
|
To update |
Metabolomics |
|
|
|
|
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/misc |
https://github.com/RECETOX/galaxytools/tree/master/tools/misc |
|
|
|
|
0 |
1 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
148 |
148 |
0 |
0 |
0 |
0 |
1 |
1 |
38 |
38 |
0 |
0 |
0 |
0 |
186 |
186 |
4 |
4 |
https://workflowhub.eu/workflows/888?version=2 |
|
|
morpheus |
morpheus |
Morpheus MS Search Application |
2015-10-29 |
https://cwenger.github.io/Morpheus |
288 |
morpheus |
290 |
To update |
Proteomics |
Peptide database search |
Peptide database search |
Proteomics |
Proteomics |
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus |
morpheus |
Morpheus |
A proteomics search algorithm specifically designed for high-resolution tandem mass spectra. |
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
13 |
20 |
101 |
177 |
0 |
0 |
0 |
0 |
105 |
105 |
1020 |
1020 |
0 |
0 |
0 |
0 |
1197 |
1121 |
125 |
118 |
|
|
|
mqppep |
mqppep_anova, mqppep_preproc |
MaxQuant Phosphoproteomic Enrichment Pipeline - Preprocessing and ANOVA |
2022-03-31 |
https://github.com/galaxyproteomics/tools-galaxyp/ |
0.1.19 |
bioconductor-preprocesscore |
1.68.0 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep |
|
|
|
|
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
2 |
2 |
13 |
13 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
13 |
2 |
2 |
|
|
|
ms2deepscore |
ms2deepscore_config_generator, ms2deepscore_similarity, ms2deepscore_training |
Mass spectra similarity scoring using a trained ms2deepscore model. |
2024-08-15 |
https://github.com/matchms/ms2deepscore |
2.0.0 |
ms2deepscore |
2.5.4 |
To update |
Metabolomics |
Spectrum calculation, Spectral library search, Network analysis |
Spectrum calculation, Spectral library search, Network analysis |
Proteomics experiment, Machine learning, Metabolomics, Small molecules, Compound libraries and screening |
Proteomics experiment, Machine learning, Metabolomics, Small molecules, Compound libraries and screening |
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/ms2deepscore |
https://github.com/RECETOX/galaxytools/tree/master/tools/ms2deepscore |
ms2deepscore |
MS2DeepScore |
MS2DeepScore is a deep learning similarity measure for mass fragmentation spectrum comparisons. MS2DeepScore provides a Siamese neural network that is trained to predict molecular structural similarities (Tanimoto scores) from pairs of mass spectrometry spectra. |
|
0 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
msconvert |
msconvert |
msconvert Convert and/or filter mass spectrometry files (including vendor formats) using the official Docker container |
2015-01-24 |
http://proteowizard.sourceforge.net/tools.shtml |
3.0.20287 |
|
|
To update |
Proteomics |
Filtering, Formatting |
Filtering, Formatting |
Proteomics, Proteomics experiment |
Proteomics, Proteomics experiment |
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert |
msconvert |
msConvert |
msConvert is a command-line utility for converting between various mass spectrometry data formats, including from raw data from several commercial companies (with vendor libraries, Windows-only). For Windows users, there is also a GUI, msConvertGUI. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
500 |
525 |
61681 |
63743 |
99 |
99 |
1495 |
1495 |
61 |
61 |
3495 |
3495 |
102 |
102 |
7131 |
7131 |
75864 |
73802 |
787 |
762 |
https://dev.workflowhub.eu/workflows/1027?version=1, https://dev.workflowhub.eu/workflows/1031?version=1, https://dev.workflowhub.eu/workflows/1119?version=2, https://dev.workflowhub.eu/workflows/1146?version=3, https://dev.workflowhub.eu/workflows/1177?version=2, https://dev.workflowhub.eu/workflows/1180?version=2, https://dev.workflowhub.eu/workflows/1338?version=1, https://dev.workflowhub.eu/workflows/1354?version=1, https://dev.workflowhub.eu/workflows/1369?version=1, https://dev.workflowhub.eu/workflows/1387?version=1, https://usegalaxy.eu/published/workflow?id=02700454f57eb556, https://usegalaxy.eu/published/workflow?id=14f9c2099db30570, https://usegalaxy.eu/published/workflow?id=1809fcaec264eac9, https://usegalaxy.eu/published/workflow?id=3676aafc35dc2fe7, https://usegalaxy.eu/published/workflow?id=3e01a2c6d954ae6e, https://usegalaxy.eu/published/workflow?id=41df8c7821b5f2fc, https://usegalaxy.eu/published/workflow?id=41e9882300fa2386, https://usegalaxy.eu/published/workflow?id=4c81726bde25c36a, https://usegalaxy.eu/published/workflow?id=5d4e4b9f07a1ec20, https://usegalaxy.eu/published/workflow?id=5dec0e5a2d75cdc1, https://usegalaxy.eu/published/workflow?id=5e4774036aa20b80, https://usegalaxy.eu/published/workflow?id=607ca3a9d45bd080, https://usegalaxy.eu/published/workflow?id=612dc5bdf388585f, https://usegalaxy.eu/published/workflow?id=6b7b86756060659b, https://usegalaxy.eu/published/workflow?id=6cb85fe1ad0c9f3b, https://usegalaxy.eu/published/workflow?id=6d3332794ceca465, https://usegalaxy.eu/published/workflow?id=82b6871682f1659a, https://usegalaxy.eu/published/workflow?id=87c21b682af78ec9, https://usegalaxy.eu/published/workflow?id=8af41219411062ad, https://usegalaxy.eu/published/workflow?id=912b81c444e35045, https://usegalaxy.eu/published/workflow?id=9ac15b644c805a2b, https://usegalaxy.eu/published/workflow?id=9ef76d764d9961b2, https://usegalaxy.eu/published/workflow?id=b73fa5f8c0403454, https://usegalaxy.eu/published/workflow?id=ba3a5d59b3879764, https://usegalaxy.eu/published/workflow?id=c4119ea7ffd29094, https://usegalaxy.eu/published/workflow?id=c750484145c9903b, https://usegalaxy.eu/published/workflow?id=cd675ab32d3e7833, https://usegalaxy.eu/published/workflow?id=d0e062aee910086a, https://usegalaxy.eu/published/workflow?id=d5756e3ebfa285ef, https://usegalaxy.eu/published/workflow?id=eb54512829d8509c, https://usegalaxy.eu/published/workflow?id=f0bec337f9998289, https://usegalaxy.eu/published/workflow?id=fc42cc9467c6ee8d, https://usegalaxy.fr/published/workflow?id=1407c1703f360f07, https://usegalaxy.org.au/published/workflow?id=762791e094457bf2, https://usegalaxy.org.au/published/workflow?id=ba217a34d7e1b5ee, https://usegalaxy.org/published/workflow?id=8ecc114eb9097855, https://usegalaxy.org/published/workflow?id=e97da2da9e0290a7, https://workflowhub.eu/workflows/1225?version=1, https://workflowhub.eu/workflows/1396?version=1, https://workflowhub.eu/workflows/1416?version=1, https://workflowhub.eu/workflows/1435?version=1, https://workflowhub.eu/workflows/1450?version=1, https://workflowhub.eu/workflows/1463?version=1, https://workflowhub.eu/workflows/1471?version=1, https://workflowhub.eu/workflows/1582?version=1, https://workflowhub.eu/workflows/1791?version=1 |
metabolomics/gc_ms_with_xcms, microbiome/clinical-mp-2-discovery, proteomics/DIA_Analysis_OSW, proteomics/clinical-mp-2-discovery, proteomics/encyclopedia, proteomics/metaquantome-data-creation, proteomics/neoantigen-peptide-verification, proteomics/protein-id-oms |
|
msgfplus |
msgfplus |
MSGF+ |
2015-11-10 |
|
0.5 |
msgf_plus |
2024.03.26 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
34 |
48 |
736 |
810 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
810 |
736 |
48 |
34 |
|
|
|
msmetaenhancer |
msmetaenhancer |
|
2021-11-22 |
https://github.com/RECETOX/MSMetaEnhancer |
0.4.1 |
msmetaenhancer |
0.4.1 |
Up-to-date |
Metabolomics |
Annotation, Standardisation and normalisation |
Annotation, Standardisation and normalisation |
Metabolomics, Compound libraries and screening, Data submission, annotation and curation |
Metabolomics, Compound libraries and screening, Data submission, annotation and curation |
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/msmetaenhancer |
https://github.com/RECETOX/galaxytools/tree/master/tools/msmetaenhancer |
msmetaenhancer |
MSMetaEnhancer |
Tool for mass spectra metadata annotation. |
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
10 |
10 |
209 |
209 |
0 |
0 |
0 |
0 |
1 |
1 |
68 |
68 |
3 |
3 |
10 |
10 |
287 |
287 |
14 |
14 |
https://workflowhub.eu/workflows/888?version=2 |
|
|
msms_extractor |
msms_extractor |
Extract MS/MS scans from the mzML file(s) based on PSM report. |
2019-10-23 |
|
1.0.0 |
proteowizard |
3_0_9992 |
To update |
Proteomics |
|
|
|
|
galaxyp |
|
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msms_extractor |
|
|
|
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
11 |
12 |
106 |
113 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
8 |
8 |
121 |
114 |
13 |
12 |
https://usegalaxy.eu/published/workflow?id=6b7b86756060659b, https://usegalaxy.eu/published/workflow?id=c750484145c9903b |
|
|
msp_merge |
msp_merge |
|
2022-05-05 |
https://github.com/RECETOX/galaxytools |
0.1.0 |
matchms |
0.30.2 |
To update |
Metabolomics |
|
|
|
|
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/msp_merge |
https://github.com/RECETOX/galaxytools/tree/master/tools/msp_merge |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
msstatstmt |
msstats |
MSstats tool for analyzing mass spectrometry proteomic datasets |
2020-07-25 |
https://github.com/MeenaChoi/MSstats |
4.0.0 |
bioconductor-msstats |
4.14.0 |
To update |
Proteomics |
Spectrum calculation, Tag-based peptide identification, Differential protein expression profiling |
Spectrum calculation, Tag-based peptide identification, Differential protein expression profiling |
Proteomics, Proteomics experiment, Protein expression |
Proteomics, Proteomics experiment, Protein expression |
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msstats |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msstats |
msstatstmt |
MSstatsTMT |
Tools for detecting differentially abundant peptides and proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling |
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
702 |
702 |
2789 |
2789 |
220 |
220 |
1210 |
1210 |
36 |
36 |
1260 |
1260 |
0 |
0 |
0 |
0 |
5259 |
5259 |
958 |
958 |
https://dev.workflowhub.eu/workflows/1026?version=1, https://dev.workflowhub.eu/workflows/1163?version=2, https://dev.workflowhub.eu/workflows/1167?version=2, https://dev.workflowhub.eu/workflows/1240?version=1, https://usegalaxy.org.au/published/workflow?id=1727d16fa4dec19c, https://workflowhub.eu/workflows/1426?version=1, https://workflowhub.eu/workflows/1458?version=1, https://workflowhub.eu/workflows/1462?version=1 |
proteomics/DIA_Analysis_MSstats, proteomics/maxquant-label-free, proteomics/maxquant-msstats-dda-lfq |
|
msstatstmt |
msstatstmt |
MSstatsTMT protein significance analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling |
2021-01-20 |
http://msstats.org/msstatstmt/ |
2.0.0 |
bioconductor-msstatstmt |
2.10.0 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msstatstmt |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msstatstmt |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
110 |
110 |
826 |
826 |
6 |
6 |
10 |
10 |
16 |
16 |
574 |
574 |
0 |
0 |
0 |
0 |
1410 |
1410 |
132 |
132 |
https://dev.workflowhub.eu/workflows/1227?version=2, https://dev.workflowhub.eu/workflows/1352?version=1, https://dev.workflowhub.eu/workflows/1371?version=1, https://usegalaxy.eu/published/workflow?id=755ede37d94dc456, https://usegalaxy.eu/published/workflow?id=8f3cafa3bc59ff82, https://usegalaxy.eu/published/workflow?id=d148459a4d4b91f1, https://usegalaxy.org.au/published/workflow?id=050a66ff6d4c2b53, https://usegalaxy.org/published/workflow?id=3f797bfb67130883, https://workflowhub.eu/workflows/1219?version=1, https://workflowhub.eu/workflows/1401?version=1, https://workflowhub.eu/workflows/1433?version=1, https://workflowhub.eu/workflows/1482?version=1 |
microbiome/clinical-mp-5-data-interpretation, proteomics/clinical-mp-5-data-interpretation, proteomics/maxquant-msstats-tmt |
|
mt2mq |
mt2mq |
Tool to prepare metatranscriptomic outputs from ASaiM for Metaquantome |
2020-06-23 |
|
1.1.0 |
r-tidyverse |
|
To update |
Proteomics |
|
|
|
|
galaxyp |
|
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mt2mq |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
39 |
39 |
276 |
276 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
276 |
276 |
39 |
39 |
|
|
|
mutational_patterns |
mutational_patterns |
Mutational patterns and signatures in base substitution catalogs |
2020-09-13 |
http://artbio.fr |
3.12.0 |
bioconductor-mutationalpatterns |
3.16.0 |
To update |
Variant Analysis |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/mutational_patterns |
https://github.com/ARTbio/tools-artbio/tree/main/tools/mutational_patterns |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
mz_to_sqlite |
mz_to_sqlite |
Creates a SQLite database for proteomics data |
2015-06-01 |
https://github.com/galaxyproteomics/mzToSQLite |
2.1.1+galaxy0 |
mztosqlite |
2.1.1 |
To update |
Proteomics |
Conversion, Peptide database search |
Conversion, Peptide database search |
Proteomics, Biological databases |
Proteomics, Biological databases |
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite |
mztosqlite |
mzToSQLite |
Convert proteomics data files into a SQLite databaseExtract data from proteomics mzIdentML and mass spec scan files: mzML, MGF, etc and store in a SQLite database.The intended purpose is to provide a Galaxy dataset that can support an interactive Galaxy visualization plugin. |
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
109 |
112 |
834 |
861 |
16 |
16 |
82 |
82 |
14 |
14 |
296 |
296 |
0 |
0 |
0 |
0 |
1239 |
1212 |
142 |
139 |
https://dev.workflowhub.eu/workflows/1036?version=1, https://dev.workflowhub.eu/workflows/1151?version=2, https://usegalaxy.eu/published/workflow?id=03e52c8c71710cae, https://usegalaxy.eu/published/workflow?id=0aee7ffa5f6384bd, https://usegalaxy.eu/published/workflow?id=2a7e63d1cc583002, https://usegalaxy.eu/published/workflow?id=41d096891bada138, https://usegalaxy.eu/published/workflow?id=41e9882300fa2386, https://usegalaxy.eu/published/workflow?id=6e5f0d05c91876c2, https://usegalaxy.eu/published/workflow?id=8a85663218676b59, https://usegalaxy.eu/published/workflow?id=9a8b5e99ca9500e3, https://usegalaxy.eu/published/workflow?id=b89cf3cb6a25c999, https://usegalaxy.eu/published/workflow?id=eb54512829d8509c, https://usegalaxy.eu/published/workflow?id=edea08c943ff9c5e, https://usegalaxy.org.au/published/workflow?id=1b9bfe7ce484fdc2, https://workflowhub.eu/workflows/1429?version=1 |
proteomics/proteogenomics-dbsearch |
|
mzml_validator |
mzml_validator |
mzML Validator checks if mzML file validates against XML Schema Definition of HUPO Proteomics Standard Initiative. |
2023-01-12 |
https://github.com/RECETOX/galaxytools |
0.1.0+galaxy2 |
lxml |
|
To update |
Metabolomics, Proteomics |
|
|
|
|
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator |
https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
mzspeclib |
mzspeclib_convert, mzspeclib_describe, mzspeclib_validate |
mzspeclib is a library and set of tools for handling, converting, and validating mass spectral libraries in a standardized format. This suite provides Galaxy wrappers for mzspeclib's core functionalities, including conversion and validation of spectral libraries. |
2025-06-12 |
https://github.com/HUPO-PSI/mzspeclib-py |
1.0.7 |
mzspeclib |
1.0.7 |
Up-to-date |
Proteomics, Metabolomics |
Conversion, Format validation |
Conversion, Format validation |
Proteomics, Metabolomics |
Proteomics, Metabolomics |
recetox |
https://github.com/RECETOX/galaxytools/tree/main/tools/mzspeclib |
https://github.com/RECETOX/galaxytools/tree/master/tools/mzspeclib |
mzspeclib |
mzspeclib |
A python reference implementation of the mzSpecLib spectral library format. |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
mztabm |
mztabm_validate |
Tools for handling mzTab-M files using various packages. |
2025-07-01 |
https://github.com/lifs-tools/jmzTab-m |
1.0.6 |
jmztab-m |
1.0.6 |
Up-to-date |
Metabolomics |
Loading, Format validation, Formatting |
Format validation, Formatting |
Ontology and terminology, Metabolomics, Data submission, annotation and curation |
Ontology and terminology, Metabolomics, Data submission, annotation and curation |
recetox |
https://github.com/RECETOX/galaxytools/tree/main/tools/mztabm |
https://github.com/RECETOX/galaxytools/tree/master/tools/mztabm |
jmztab-m |
jmztab-m |
Reference implementation for mzTab 2.0 for metabolomics |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
ncbi_blast_plus |
blastxml_to_tabular, get_species_taxids, ncbi_blastdbcmd_info, ncbi_blastdbcmd_wrapper, ncbi_blastn_wrapper, ncbi_blastp_wrapper, ncbi_blastx_wrapper, ncbi_convert2blastmask_wrapper, ncbi_deltablast_wrapper, ncbi_dustmasker_wrapper, ncbi_makeblastdb, ncbi_makeprofiledb, ncbi_psiblast_wrapper, ncbi_rpsblast_wrapper, ncbi_rpstblastn_wrapper, ncbi_segmasker_wrapper, ncbi_tblastn_wrapper, ncbi_tblastx_wrapper |
NCBI BLAST+ |
2013-09-23 |
https://blast.ncbi.nlm.nih.gov/ |
2.16.0 |
blast |
2.17.0 |
To update |
Sequence Analysis |
|
|
|
|
devteam |
https://github.com/peterjc/galaxy_blast/tree/master/tools/ncbi_blast_plus |
https://github.com/peterjc/galaxy_blast/tree/master/tools/ncbi_blast_plus |
|
|
|
|
16 |
16 |
16 |
16 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
16 |
16 |
16 |
0 |
0 |
0 |
0 |
0 |
16 |
0 |
0 |
0 |
16 |
16 |
16 |
15 |
0 |
3668 |
3980 |
511765 |
573432 |
4581 |
5403 |
662235 |
716213 |
1290 |
1529 |
239169 |
259544 |
148 |
151 |
11686 |
11795 |
1560984 |
1424855 |
11063 |
9687 |
https://dev.workflowhub.eu/workflows/1043?version=1, https://dev.workflowhub.eu/workflows/1236?version=2, https://dev.workflowhub.eu/workflows/1274?version=2, https://dev.workflowhub.eu/workflows/1287?version=2, https://dev.workflowhub.eu/workflows/1292?version=2, https://dev.workflowhub.eu/workflows/1359?version=1, https://dev.workflowhub.eu/workflows/1387?version=1, https://usegalaxy.eu/published/workflow?id=00e246ea459b0991, https://usegalaxy.eu/published/workflow?id=012762cb4acb068b, https://usegalaxy.eu/published/workflow?id=013cc98f55b01d5d, https://usegalaxy.eu/published/workflow?id=08f41680101a1a45, https://usegalaxy.eu/published/workflow?id=0ab3e47ebd3b520e, https://usegalaxy.eu/published/workflow?id=0aee7ffa5f6384bd, https://usegalaxy.eu/published/workflow?id=0b9071d5dfa38559, https://usegalaxy.eu/published/workflow?id=0f044c9f62773a88, https://usegalaxy.eu/published/workflow?id=12a018217ee146ca, https://usegalaxy.eu/published/workflow?id=152223c8aed27357, https://usegalaxy.eu/published/workflow?id=17f73aba442315e6, https://usegalaxy.eu/published/workflow?id=1860e02bcb894a64, https://usegalaxy.eu/published/workflow?id=1b43449ed8481892, https://usegalaxy.eu/published/workflow?id=2497292e98937a5f, https://usegalaxy.eu/published/workflow?id=24eaa682897379c8, https://usegalaxy.eu/published/workflow?id=28af61ead68e0976, https://usegalaxy.eu/published/workflow?id=290bc4120c2c5078, https://usegalaxy.eu/published/workflow?id=2addb042071557e3, https://usegalaxy.eu/published/workflow?id=2c2f0b4312bae4f4, https://usegalaxy.eu/published/workflow?id=2cec6a39cd496f09, https://usegalaxy.eu/published/workflow?id=3069c17b52decab4, https://usegalaxy.eu/published/workflow?id=33312e5643279e8a, https://usegalaxy.eu/published/workflow?id=33a052f9a3d5551d, https://usegalaxy.eu/published/workflow?id=3a178ff6884a5d6d, https://usegalaxy.eu/published/workflow?id=3dec7c9b02c3d1ee, https://usegalaxy.eu/published/workflow?id=3e0246389fb70340, https://usegalaxy.eu/published/workflow?id=44189803f223acd1, https://usegalaxy.eu/published/workflow?id=50d85103f2275d38, https://usegalaxy.eu/published/workflow?id=513389e1a8c6bba9, https://usegalaxy.eu/published/workflow?id=52cb9bacc26b013e, https://usegalaxy.eu/published/workflow?id=58db3e1996a8f093, https://usegalaxy.eu/published/workflow?id=5be158931abca947, https://usegalaxy.eu/published/workflow?id=6201ec86d380aef1, https://usegalaxy.eu/published/workflow?id=6d3332794ceca465, https://usegalaxy.eu/published/workflow?id=6da171871d4f3fd5, https://usegalaxy.eu/published/workflow?id=79eb28066236e836, https://usegalaxy.eu/published/workflow?id=7c80cd57b2de54d4, https://usegalaxy.eu/published/workflow?id=86465932556bc96c, https://usegalaxy.eu/published/workflow?id=8a14cda6140acab7, https://usegalaxy.eu/published/workflow?id=8c7e972020799d57, https://usegalaxy.eu/published/workflow?id=8d64614d1971065a, https://usegalaxy.eu/published/workflow?id=8f747dbff3216993, https://usegalaxy.eu/published/workflow?id=933ab5e7fe13a8e0, https://usegalaxy.eu/published/workflow?id=9588311136ac8794, https://usegalaxy.eu/published/workflow?id=974cc681d07ec788, https://usegalaxy.eu/published/workflow?id=9a60ecf98d4f8134, https://usegalaxy.eu/published/workflow?id=9a95556ec171d405, https://usegalaxy.eu/published/workflow?id=ab646c6ab6de7061, https://usegalaxy.eu/published/workflow?id=afad9a17a80bb26d, https://usegalaxy.eu/published/workflow?id=bebcbd6f0ffa55c5, https://usegalaxy.eu/published/workflow?id=c4fc3adf8f7ff2bc, https://usegalaxy.eu/published/workflow?id=c55388a8fbfd7381, https://usegalaxy.eu/published/workflow?id=c7f34c67c9054234, https://usegalaxy.eu/published/workflow?id=d07fe8b5a045c176, https://usegalaxy.eu/published/workflow?id=d22dac11eba8c5a3, https://usegalaxy.eu/published/workflow?id=df7d9943423549df, https://usegalaxy.eu/published/workflow?id=e14b81a8c0b1b7a4, https://usegalaxy.eu/published/workflow?id=e2d0d5340975c87f, https://usegalaxy.eu/published/workflow?id=eb5ab8bc82569eee, https://usegalaxy.eu/published/workflow?id=ec6b2c926fffab5f, https://usegalaxy.eu/published/workflow?id=edea08c943ff9c5e, https://usegalaxy.eu/published/workflow?id=edf7e2128f5aef8d, https://usegalaxy.eu/published/workflow?id=f62d7c0c7cc57eb6, https://usegalaxy.eu/published/workflow?id=f946efa49bd41a43, https://usegalaxy.eu/published/workflow?id=fc0b9efa7d2e61e6, https://usegalaxy.fr/published/workflow?id=41264142d3c00016, https://usegalaxy.fr/published/workflow?id=8b1678200a1d157a, https://usegalaxy.org.au/published/workflow?id=0edb9c8b767fa74b, https://usegalaxy.org.au/published/workflow?id=3d47e0de658b3304, https://usegalaxy.org.au/published/workflow?id=4047f9f242542716, https://usegalaxy.org.au/published/workflow?id=470eb26144325590, https://usegalaxy.org.au/published/workflow?id=5cf5334877cc1297, https://usegalaxy.org.au/published/workflow?id=5fb44f257e445f56, https://usegalaxy.org.au/published/workflow?id=762791e094457bf2, https://usegalaxy.org.au/published/workflow?id=7f37c5366bce5489, https://usegalaxy.org.au/published/workflow?id=8034bd0690b4cbe8, https://usegalaxy.org.au/published/workflow?id=83441e3de699d157, https://usegalaxy.org.au/published/workflow?id=897a1255cef5c310, https://usegalaxy.org.au/published/workflow?id=94c7fdcbbc7b428a, https://usegalaxy.org.au/published/workflow?id=97e55a900db3863b, https://usegalaxy.org.au/published/workflow?id=c049ae8f729b2d7e, https://usegalaxy.org.au/published/workflow?id=c92fead7c30c7497, https://usegalaxy.org.au/published/workflow?id=d2dcd3b54e5082a6, https://usegalaxy.org.au/published/workflow?id=d417e920ff97e4c1, https://usegalaxy.org.au/published/workflow?id=d720c98f7227b6d5, https://usegalaxy.org.au/published/workflow?id=dccc8fb49d61ac33, https://usegalaxy.org/published/workflow?id=1473cdcbd664d147, https://usegalaxy.org/published/workflow?id=1b80302437db5937, https://usegalaxy.org/published/workflow?id=5c259623a010fe77, https://usegalaxy.org/published/workflow?id=5e38c7b36e4918ad, https://usegalaxy.org/published/workflow?id=605160c81d098703, https://usegalaxy.org/published/workflow?id=7c9a55db0b0eb178, https://usegalaxy.org/published/workflow?id=7fc8b2398b6f093f, https://usegalaxy.org/published/workflow?id=8ecc114eb9097855, https://usegalaxy.org/published/workflow?id=a67afbea4b2eb26b, https://usegalaxy.org/published/workflow?id=b7fe3873ee5e3a02, https://usegalaxy.org/published/workflow?id=c8f9e048ddae7d03, https://usegalaxy.org/published/workflow?id=cace9f1359874352, https://usegalaxy.org/published/workflow?id=d2c408df40dc311b, https://usegalaxy.org/published/workflow?id=e1dcdc125122f561, https://usegalaxy.org/published/workflow?id=e887adf3afc3253d, https://usegalaxy.org/published/workflow?id=ea206593698adbfd, https://usegalaxy.org/published/workflow?id=fc2b48600853f3ea, https://workflowhub.eu/workflows/100?version=1, https://workflowhub.eu/workflows/102?version=1, https://workflowhub.eu/workflows/1416?version=1, https://workflowhub.eu/workflows/1467?version=1, https://workflowhub.eu/workflows/1594?version=1, https://workflowhub.eu/workflows/1630?version=1, https://workflowhub.eu/workflows/1635?version=1, https://workflowhub.eu/workflows/1702?version=1, https://workflowhub.eu/workflows/1723?version=1, https://workflowhub.eu/workflows/1791?version=1, https://workflowhub.eu/workflows/37?version=1, https://workflowhub.eu/workflows/38?version=1, https://workflowhub.eu/workflows/39?version=1, https://workflowhub.eu/workflows/40?version=1, https://workflowhub.eu/workflows/645?version=12, https://workflowhub.eu/workflows/655?version=1 |
assembly/assembly-decontamination, data-science/online-resources-gene, ecology/ENA_Biodiv_submission, ecology/Obitools-metabarcoding, ecology/eDNA-taxonomic-analysis, genome-annotation/functional, proteomics/neoantigen-peptide-verification, proteomics/proteogenomics-novel-peptide-analysis, sequence-analysis/Manage_AB1_Sanger, sequence-analysis/ncbi-blast-against-the-madland, sequence-analysis/viral_primer_design |
|
oases |
oasesoptimiserv |
Short read assembler |
2017-10-15 |
http://artbio.fr |
1.4.0 |
oases |
0.2.09 |
To update |
Assembly, RNA |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/oases |
https://github.com/ARTbio/tools-artbio/tree/main/tools/oases |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
obisindicators |
obisindicators, obis_data |
Compute biodiveristy indicators for marine data from obis |
2022-11-04 |
https://github.com/Marie59/obisindicators |
0.0.2 |
r-base |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/obisindicators |
|
|
|
|
1 |
0 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
23 |
23 |
357 |
357 |
10 |
10 |
17 |
17 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
374 |
374 |
33 |
33 |
https://dev.workflowhub.eu/workflows/1252?version=2, https://usegalaxy.eu/published/workflow?id=4f51080ffe7d57e0, https://usegalaxy.eu/published/workflow?id=9e05bd65faf58ab3, https://workflowhub.eu/workflows/1698?version=1, https://workflowhub.eu/workflows/662?version=1, https://workflowhub.eu/workflows/758?version=1 |
climate/earth_system, ecology/obisindicators |
|
ocean |
argo_getdata, copernicusmarine, divand_full_analysis |
Access, process, and visualise oceanographic data for the Earth System |
2023-11-17 |
https://github.com/Marie59/FE-ft-ESG/tree/main/ocean |
0.1.15 |
copernicusmarine |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean |
|
|
|
|
0 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
10 |
99 |
99 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
99 |
99 |
10 |
10 |
https://dev.workflowhub.eu/workflows/1193?version=1, https://dev.workflowhub.eu/workflows/1200?version=2, https://usegalaxy.eu/published/workflow?id=26fe6b0fb6ca2892, https://usegalaxy.eu/published/workflow?id=a80f9b926ba43892, https://usegalaxy.eu/published/workflow?id=fc33ea1679e5f1b7, https://workflowhub.eu/workflows/1436?version=1, https://workflowhub.eu/workflows/1445?version=1 |
climate/argo_pangeo, climate/earth_system, climate/ocean-variables |
|
ocean_data_view_manager |
tool_biogeochemical_calibration, tool_odv, tool_odv_history |
The tool merges various datasets with a common vocabulary and creates a single generic ODV spreadsheet in an automatic way. |
2025-03-18 |
https://github.com/Marie59/FE-ft-ESG/tree/main/ocean |
2.1 |
|
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean_data_view_manager |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean_data_view_manager |
|
|
|
|
0 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
https://usegalaxy.eu/published/workflow?id=44827462c065bae3, https://usegalaxy.eu/published/workflow?id=d3d9d1f173fd7bfe |
|
|
ocean_neural_network |
bgc_canyon_b |
Robust Estimation of Open Ocean CO2 Variables and Nutrient Concentrations From T, S, and O2 Data Using Bayesian Neural Networks |
2025-03-18 |
https://github.com/Marie59/FE-ft-ESG/tree/main/ocean |
0.9.3 |
r-base |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean_neural_network |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/ocean_neural_network |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
ogcProcess_otb_bandmath |
otb_band_math |
Outputs a monoband image which is the result of a mathematical operation on several multi-band images. |
2024-03-12 |
https://github.com/AquaINFRA/galaxy |
1.0 |
r-base |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/OtbBandMath |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogcProcess_otb_bandmath |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 |
7 |
99 |
99 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
99 |
99 |
7 |
7 |
https://usegalaxy.eu/published/workflow?id=b1fa4a3561988704, https://usegalaxy.eu/published/workflow?id=e8244d1c80ea0470 |
|
|
ogcProcess_otb_meanShiftSmoothing |
otb_mean_shift_smoothing |
This application smooths an image using the MeanShift algorithm. |
2024-03-12 |
https://github.com/AquaINFRA/galaxy |
1.0 |
r-base |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/interpolation |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogcProcess_otb_meanShiftSmoothing |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
57 |
57 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
57 |
57 |
4 |
4 |
https://usegalaxy.eu/published/workflow?id=e8244d1c80ea0470 |
|
|
omero_clean_rois_tables |
omero_clean_rois_tables |
Remove all ROIs and all tables on OMERO associated to an omero object and recursively up and down |
2023-06-23 |
|
20230623 |
fiji |
20250206 |
To update |
Imaging |
|
|
|
|
lldelisle |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/omero_clean_rois_tables |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/omero_clean_rois_tables |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
omero_get_children_ids |
omero_get_children_ids |
Get omero id of children of an omero object id |
2023-12-22 |
|
0.2.0 |
omero-py |
5.11.1 |
To update |
Imaging |
|
|
|
|
lldelisle |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/omero_get_children_ids |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/omero_get_children_ids |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
omero_get_full_images |
omero_get_full_images |
Get full images from omero |
2024-05-21 |
|
20240521 |
fiji |
20250206 |
To update |
Imaging |
|
|
|
|
lldelisle |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/omero_get_full_images |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/omero_get_full_images |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
omero_hyperstack_to_fluo_measurements_on_gastruloid |
omero_hyperstack_to_fluo_measurements_on_gastruloid |
Analyse Hyperstack on OMERO server to measure fluorescence levels |
2023-03-24 |
|
20230809 |
fiji |
20250206 |
To update |
Imaging |
|
|
|
|
lldelisle |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/omero_hyperstack_to_fluo_measurements_on_gastruloid |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/omero_hyperstack_to_fluo_measurements_on_gastruloid |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
omero_hyperstack_to_gastruloid_measurements |
omero_hyperstack_to_gastruloid_measurements |
Analyse Hyperstack on OMERO server to segment gastruloid and compute measurements |
2023-03-24 |
|
20240214 |
fiji |
20250206 |
To update |
Imaging |
|
|
|
|
lldelisle |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/omero_hyperstack_to_gastruloid_measurements |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/omero_hyperstack_to_gastruloid_measurements |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
omero_upload |
omero_dataset_to_plate, omero_filter, omero_get_id, omero_get_value, omero_import, omero_metadata_import, omero_roi_import |
Interact with an OMERO.server using omero-py and ezomero. |
2024-02-07 |
https://github.com/ome/omero-py/ |
5.18.0 |
|
|
To update |
Imaging |
Image analysis |
Image analysis |
Imaging, Data visualisation |
Imaging, Data visualisation |
ufz |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero |
omero |
OMERO |
Client-server Java software for visualisation, management and analysis of biological microscope images. |
|
0 |
0 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
https://workflowhub.eu/workflows/1258?version=1, https://workflowhub.eu/workflows/1259?version=1 |
imaging/omero-suite |
|
openmm |
pdbfixer |
OpenMM is a toolkit for molecular simulation using high performance GPU code. |
2022-03-25 |
https://github.com/openmm |
1.8.1 |
pdbfixer |
|
To update |
Molecular Dynamics, Computational chemistry |
|
|
|
|
chemteam |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/openmm |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/openmm |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
63 |
63 |
1233 |
1233 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1233 |
1233 |
63 |
63 |
|
|
|
openms |
AccurateMassSearch, AssayGeneratorMetabo, BaselineFilter, CVInspector, ClusterMassTraces, ClusterMassTracesByPrecursor, CometAdapter, ConsensusID, ConsensusMapNormalizer, DTAExtractor, DatabaseFilter, DatabaseSuitability, DeMeanderize, DecoyDatabase, Digestor, DigestorMotif, EICExtractor, ERPairFinder, Epifany, ExternalCalibration, FalseDiscoveryRate, FeatureFinderCentroided, FeatureFinderIdentification, FeatureFinderIsotopeWavelet, FeatureFinderMRM, FeatureFinderMetabo, FeatureFinderMetaboIdent, FeatureFinderMultiplex, FeatureLinkerLabeled, FeatureLinkerUnlabeled, FeatureLinkerUnlabeledKD, FeatureLinkerUnlabeledQT, FileConverter, FileFilter, FileInfo, FileMerger, FuzzyDiff, GNPSExport, HighResPrecursorMassCorrector, IDConflictResolver, IDExtractor, IDFileConverter, IDFilter, IDMapper, IDMassAccuracy, IDMerger, IDPosteriorErrorProbability, IDRTCalibration, IDRipper, IDScoreSwitcher, IDSplitter, InternalCalibration, IsobaricAnalyzer, JSONExporter, LuciphorAdapter, MRMMapper, MRMPairFinder, MRMTransitionGroupPicker, MSFraggerAdapter, MSGFPlusAdapter, MSstatsConverter, MapAlignerIdentification, MapAlignerPoseClustering, MapAlignerSpectrum, MapAlignerTreeGuided, MapNormalizer, MapRTTransformer, MapStatistics, MascotAdapter, MascotAdapterOnline, MassCalculator, MassTraceExtractor, MetaProSIP, MetaboliteSpectralMatcher, MultiplexResolver, MzMLSplitter, MzTabExporter, NoiseFilterGaussian, NoiseFilterSGolay, NovorAdapter, NucleicAcidSearchEngine, OpenMSDatabasesInfo, OpenMSInfo, OpenPepXL, OpenPepXLLF, OpenSwathAnalyzer, OpenSwathAssayGenerator, OpenSwathChromatogramExtractor, OpenSwathConfidenceScoring, OpenSwathDIAPreScoring, OpenSwathDecoyGenerator, OpenSwathFeatureXMLToTSV, OpenSwathFileSplitter, OpenSwathMzMLFileCacher, OpenSwathRTNormalizer, OpenSwathRewriteToFeatureXML, OpenSwathWorkflow, PSMFeatureExtractor, PeakPickerHiRes, PeakPickerIterative, PeakPickerWavelet, PeptideIndexer, PercolatorAdapter, PhosphoScoring, PrecursorMassCorrector, ProteinInference, ProteinQuantifier, ProteinResolver, QCCalculator, QCEmbedder, QCExporter, QCExtractor, QCImporter, QCMerger, QCShrinker, QualityControl, RNADigestor, RNAMassCalculator, RNPxlSearch, RNPxlXICFilter, SageAdapter, SeedListGenerator, SemanticValidator, SequenceCoverageCalculator, SimpleSearchEngine, SiriusAdapter, SpecLibCreator, SpecLibSearcher, SpectraFilterBernNorm, SpectraFilterMarkerMower, SpectraFilterNLargest, SpectraFilterNormalizer, SpectraFilterParentPeakMower, SpectraFilterScaler, SpectraFilterSqrtMower, SpectraFilterThresholdMower, SpectraFilterWindowMower, SpectraMerger, SpectraSTSearchAdapter, StaticModification, TICCalculator, TOFCalibration, TargetedFileConverter, TextExporter, TriqlerConverter, XFDR, XMLValidator, XTandemAdapter |
OpenMS Suite for LC/MS data management and analyses |
2017-02-21 |
https://www.openms.de/ |
3.1 |
openms |
3.4.1 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms |
|
|
|
|
8 |
34 |
144 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
18 |
141 |
124 |
0 |
576 |
665 |
33852 |
112492 |
8 |
8 |
214 |
214 |
34 |
34 |
1282 |
1282 |
0 |
0 |
0 |
0 |
113988 |
35348 |
707 |
618 |
https://dev.workflowhub.eu/workflows/1029?version=1, https://dev.workflowhub.eu/workflows/1030?version=1, https://dev.workflowhub.eu/workflows/1031?version=1, https://dev.workflowhub.eu/workflows/1032?version=1, https://dev.workflowhub.eu/workflows/1033?version=1, https://dev.workflowhub.eu/workflows/1037?version=1, https://dev.workflowhub.eu/workflows/1039?version=1, https://dev.workflowhub.eu/workflows/1040?version=1, https://dev.workflowhub.eu/workflows/1171?version=2, https://dev.workflowhub.eu/workflows/1172?version=2, https://dev.workflowhub.eu/workflows/1180?version=2, https://dev.workflowhub.eu/workflows/1188?version=2, https://dev.workflowhub.eu/workflows/1191?version=1, https://dev.workflowhub.eu/workflows/1199?version=2, https://dev.workflowhub.eu/workflows/1204?version=2, https://dev.workflowhub.eu/workflows/1213?version=2, https://dev.workflowhub.eu/workflows/1215?version=2, https://dev.workflowhub.eu/workflows/1224?version=2, https://usegalaxy.eu/published/workflow?id=41d096891bada138, https://usegalaxy.eu/published/workflow?id=68edbb8eec38ad00, https://usegalaxy.eu/published/workflow?id=7463b26aab6a965d, https://usegalaxy.eu/published/workflow?id=86d50bbaaa3936dc, https://usegalaxy.eu/published/workflow?id=afb138fc03ca61a8, https://usegalaxy.eu/published/workflow?id=d55df785d4c71876, https://usegalaxy.eu/published/workflow?id=da10c475c83c5469, https://usegalaxy.eu/published/workflow?id=e9e41c23261d4ac5, https://usegalaxy.eu/published/workflow?id=eaf4d8f8fb3e683d, https://usegalaxy.org.au/published/workflow?id=03efeb2948494130, https://usegalaxy.org.au/published/workflow?id=236e0f306916149b, https://usegalaxy.org.au/published/workflow?id=33922db405a97cbb, https://usegalaxy.org.au/published/workflow?id=59c9a6efaf57ce35, https://usegalaxy.org.au/published/workflow?id=65a659982f955743, https://usegalaxy.org.au/published/workflow?id=7cddb345877f08bf, https://usegalaxy.org.au/published/workflow?id=88fa3e250db2d70e, https://usegalaxy.org.au/published/workflow?id=c2f449e69d06ccf5, https://usegalaxy.org.au/published/workflow?id=da79aa2dfd6b34bc, https://usegalaxy.org/published/workflow?id=0775ff66d1bc04b5, https://usegalaxy.org/published/workflow?id=9865fee6c68fc201, https://usegalaxy.org/published/workflow?id=f9048d9678e21f36, https://workflowhub.eu/workflows/1394?version=1, https://workflowhub.eu/workflows/1399?version=1, https://workflowhub.eu/workflows/1421?version=1, https://workflowhub.eu/workflows/1424?version=1, https://workflowhub.eu/workflows/1434?version=1, https://workflowhub.eu/workflows/1438?version=1, https://workflowhub.eu/workflows/1446?version=1, https://workflowhub.eu/workflows/1449?version=1, https://workflowhub.eu/workflows/1452?version=1, https://workflowhub.eu/workflows/1463?version=1, https://workflowhub.eu/workflows/613?version=2 |
proteomics/DIA_Analysis_OSW, proteomics/DIA_lib_OSW, proteomics/database-handling, proteomics/ntails, proteomics/protein-id-oms, proteomics/protein-id-sg-ps, proteomics/protein-quant-sil |
|
packmol |
packmol |
PACKMOL is a package for creating starting structures for Molecular Dynamics simulations |
2018-10-04 |
http://m3g.iqm.unicamp.br/packmol/home.shtml |
18.169.1 |
packmol |
|
To update |
Molecular Dynamics, Computational chemistry |
|
|
|
|
chemteam |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/buildtools/packmol |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
34 |
35 |
269 |
298 |
9 |
9 |
424 |
424 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
722 |
693 |
44 |
43 |
|
|
|
pampa |
pampa_communitymetrics, pampa_presabs, pampa_glmcomm, pampa_glmsp, pampa_plotglm |
Tools to compute and analyse biodiversity metrics |
2020-06-06 |
|
0.0.2 |
|
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/ColineRoyaux/PAMPA-Galaxy |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/PAMPA |
|
|
|
|
0 |
5 |
5 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
4 |
0 |
50 |
50 |
1253 |
1253 |
0 |
0 |
0 |
0 |
23 |
23 |
960 |
960 |
1 |
1 |
1 |
1 |
2214 |
2214 |
74 |
74 |
https://dev.workflowhub.eu/workflows/1283?version=2, https://usegalaxy.eu/published/workflow?id=428be4c7d1fd828f, https://usegalaxy.eu/published/workflow?id=7c45c90fffe40aca, https://usegalaxy.eu/published/workflow?id=d33ab07e4cf44f8c, https://workflowhub.eu/workflows/1696?version=1 |
ecology/PAMPA-toolsuite-tutorial |
|
pathifier |
pathifier |
pathifier |
2019-09-03 |
https:// |
1.40.0 |
bioconductor-pathifier |
1.44.0 |
To update |
Transcriptomics, Statistics |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/pathifier |
https://github.com/ARTbio/tools-artbio/tree/main/tools/pathifier |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
11 |
11 |
257 |
257 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
257 |
257 |
11 |
11 |
|
|
|
pep_pointer |
pep_pointer |
PepPointer categorizes peptides by their genomic coordinates. |
2017-12-19 |
|
0.1.3+galaxy1 |
python |
|
To update |
Genomic Interval Operations, Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pep_pointer |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pep_pointer |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
56 |
57 |
529 |
545 |
14 |
14 |
23 |
23 |
9 |
9 |
185 |
185 |
0 |
0 |
0 |
0 |
753 |
737 |
80 |
79 |
https://dev.workflowhub.eu/workflows/1043?version=1, https://dev.workflowhub.eu/workflows/1236?version=2, https://dev.workflowhub.eu/workflows/1385?version=2, https://usegalaxy.eu/published/workflow?id=08bbf87ab2a2230e, https://usegalaxy.eu/published/workflow?id=09194b5a549f7979, https://usegalaxy.eu/published/workflow?id=3a178ff6884a5d6d, https://usegalaxy.eu/published/workflow?id=4bd0827030df02a3, https://usegalaxy.eu/published/workflow?id=d375fb9af8d46793, https://usegalaxy.eu/published/workflow?id=f946efa49bd41a43, https://usegalaxy.org.au/published/workflow?id=c049ae8f729b2d7e, https://usegalaxy.org.au/published/workflow?id=cf5ab8fe4e2c0859, https://usegalaxy.org/published/workflow?id=336d74481d2f721a, https://workflowhub.eu/workflows/1457?version=1, https://workflowhub.eu/workflows/1467?version=1, https://workflowhub.eu/workflows/1790?version=1 |
proteomics/neoantigen-variant-annotation, proteomics/proteogenomics-novel-peptide-analysis |
|
pepquery |
pepquery |
A peptide-centric MS search engine for novel peptide identification and validation. |
2020-01-22 |
https://pepquery.org |
1.6.2 |
pepquery |
2.0.2 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pepquery |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pepquery |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
76 |
76 |
7435 |
7435 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7435 |
7435 |
76 |
76 |
https://usegalaxy.eu/published/workflow?id=00e246ea459b0991, https://usegalaxy.eu/published/workflow?id=02700454f57eb556, https://usegalaxy.eu/published/workflow?id=03e52c8c71710cae, https://usegalaxy.eu/published/workflow?id=17a1433d0b681d4a, https://usegalaxy.eu/published/workflow?id=1809fcaec264eac9, https://usegalaxy.eu/published/workflow?id=229a955d29bd4064, https://usegalaxy.eu/published/workflow?id=28af61ead68e0976, https://usegalaxy.eu/published/workflow?id=3e01a2c6d954ae6e, https://usegalaxy.eu/published/workflow?id=41df8c7821b5f2fc, https://usegalaxy.eu/published/workflow?id=470b629d22b0fc51, https://usegalaxy.eu/published/workflow?id=4c81726bde25c36a, https://usegalaxy.eu/published/workflow?id=58db3e1996a8f093, https://usegalaxy.eu/published/workflow?id=5e4774036aa20b80, https://usegalaxy.eu/published/workflow?id=612dc5bdf388585f, https://usegalaxy.eu/published/workflow?id=6201ec86d380aef1, https://usegalaxy.eu/published/workflow?id=6306656ec10bd18f, https://usegalaxy.eu/published/workflow?id=6cb85fe1ad0c9f3b, https://usegalaxy.eu/published/workflow?id=6da171871d4f3fd5, https://usegalaxy.eu/published/workflow?id=6e5f0d05c91876c2, https://usegalaxy.eu/published/workflow?id=79eb28066236e836, https://usegalaxy.eu/published/workflow?id=82b6871682f1659a, https://usegalaxy.eu/published/workflow?id=8a85663218676b59, https://usegalaxy.eu/published/workflow?id=8bb3bc745ea62bed, https://usegalaxy.eu/published/workflow?id=9a8b5e99ca9500e3, https://usegalaxy.eu/published/workflow?id=9ef76d764d9961b2, https://usegalaxy.eu/published/workflow?id=a372f693471beb56, https://usegalaxy.eu/published/workflow?id=adf5e8bead686341, https://usegalaxy.eu/published/workflow?id=b73fa5f8c0403454, https://usegalaxy.eu/published/workflow?id=bfe26679d670bb5e, https://usegalaxy.eu/published/workflow?id=c02ff9e97ce796c6, https://usegalaxy.eu/published/workflow?id=ca342c5018c210e7, https://usegalaxy.eu/published/workflow?id=d5756e3ebfa285ef, https://usegalaxy.eu/published/workflow?id=d95a3349f38792fc, https://usegalaxy.eu/published/workflow?id=f0bec337f9998289 |
|
|
pepquery2 |
pepquery2, pepquery2_index, pepquery2_show_sets |
PepQuery2 peptide-centric MS search for peptide identification and validation |
2022-10-02 |
https://pepquery.org |
2.0.2 |
pepquery |
2.0.2 |
Up-to-date |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pepquery2 |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pepquery2 |
|
|
|
|
3 |
1 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
0 |
0 |
29 |
29 |
1649 |
1649 |
1 |
1 |
1 |
1 |
2 |
2 |
99 |
99 |
0 |
0 |
0 |
0 |
1749 |
1749 |
32 |
32 |
https://dev.workflowhub.eu/workflows/1351?version=1, https://dev.workflowhub.eu/workflows/1372?version=1, https://dev.workflowhub.eu/workflows/1382?version=1, https://dev.workflowhub.eu/workflows/1387?version=1, https://usegalaxy.eu/published/workflow?id=5374daf356516a40, https://usegalaxy.eu/published/workflow?id=6d3332794ceca465, https://usegalaxy.eu/published/workflow?id=71816adecac46e74, https://usegalaxy.eu/published/workflow?id=73dc2384535bf6af, https://usegalaxy.eu/published/workflow?id=8e997deae5a382c4, https://usegalaxy.eu/published/workflow?id=9b4e6c5f2c1babce, https://usegalaxy.eu/published/workflow?id=d87fc6685e47d27d, https://usegalaxy.org.au/published/workflow?id=762791e094457bf2, https://usegalaxy.org.au/published/workflow?id=832a30759469d3fe, https://usegalaxy.org.au/published/workflow?id=9281258aefd17c0c, https://usegalaxy.org/published/workflow?id=42331381df05b956, https://usegalaxy.org/published/workflow?id=8ecc114eb9097855, https://usegalaxy.org/published/workflow?id=d0847ce8261eb922, https://workflowhub.eu/workflows/1218?version=1, https://workflowhub.eu/workflows/1406?version=1, https://workflowhub.eu/workflows/1416?version=1, https://workflowhub.eu/workflows/1425?version=1, https://workflowhub.eu/workflows/1464?version=1, https://workflowhub.eu/workflows/1789?version=1, https://workflowhub.eu/workflows/1791?version=1 |
microbiome/clinical-mp-3-verification, proteomics/clinical-mp-3-verification, proteomics/neoantigen-hla-binding-novel-peptides, proteomics/neoantigen-peptide-verification |
|
peptide_genomic_coordinate |
peptide_genomic_coordinate |
Gets genomic coordinate of peptides based on the information in mzsqlite and genomic mapping sqlite files |
2019-03-29 |
|
1.0.0 |
python |
|
To update |
Proteomics |
|
|
|
|
galaxyp |
|
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptide_genomic_coordinate |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
56 |
56 |
469 |
472 |
11 |
11 |
17 |
17 |
6 |
6 |
171 |
171 |
0 |
0 |
0 |
0 |
660 |
657 |
73 |
73 |
https://dev.workflowhub.eu/workflows/1043?version=1, https://dev.workflowhub.eu/workflows/1236?version=2, https://usegalaxy.eu/published/workflow?id=08bbf87ab2a2230e, https://usegalaxy.eu/published/workflow?id=09194b5a549f7979, https://usegalaxy.eu/published/workflow?id=3a178ff6884a5d6d, https://usegalaxy.org.au/published/workflow?id=c049ae8f729b2d7e, https://workflowhub.eu/workflows/1467?version=1 |
proteomics/proteogenomics-novel-peptide-analysis |
|
peptideshaker |
fasta_cli, ident_params, peptide_shaker, search_gui |
PeptideShaker and SearchGUI |
2015-01-31 |
http://compomics.github.io |
|
searchgui |
4.3.15 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker |
|
|
|
|
4 |
4 |
4 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
4 |
2 |
0 |
475 |
543 |
11820 |
18426 |
190 |
190 |
1443 |
1443 |
48 |
48 |
3409 |
3409 |
3 |
3 |
11 |
11 |
23289 |
16683 |
784 |
716 |
https://dev.workflowhub.eu/workflows/1032?version=1, https://dev.workflowhub.eu/workflows/1033?version=1, https://dev.workflowhub.eu/workflows/1036?version=1, https://dev.workflowhub.eu/workflows/1041?version=1, https://dev.workflowhub.eu/workflows/1151?version=2, https://dev.workflowhub.eu/workflows/1159?version=2, https://dev.workflowhub.eu/workflows/1171?version=2, https://dev.workflowhub.eu/workflows/1172?version=2, https://dev.workflowhub.eu/workflows/1177?version=2, https://dev.workflowhub.eu/workflows/1338?version=1, https://dev.workflowhub.eu/workflows/1354?version=1, https://dev.workflowhub.eu/workflows/1369?version=1, https://usegalaxy.eu/published/workflow?id=03e52c8c71710cae, https://usegalaxy.eu/published/workflow?id=0aee7ffa5f6384bd, https://usegalaxy.eu/published/workflow?id=0e0be913c3e27022, https://usegalaxy.eu/published/workflow?id=1706bfa819bbfa89, https://usegalaxy.eu/published/workflow?id=1809fcaec264eac9, https://usegalaxy.eu/published/workflow?id=229a955d29bd4064, https://usegalaxy.eu/published/workflow?id=249c7569b61fb349, https://usegalaxy.eu/published/workflow?id=2a7e63d1cc583002, https://usegalaxy.eu/published/workflow?id=3e01a2c6d954ae6e, https://usegalaxy.eu/published/workflow?id=41d096891bada138, https://usegalaxy.eu/published/workflow?id=41df8c7821b5f2fc, https://usegalaxy.eu/published/workflow?id=41e9882300fa2386, https://usegalaxy.eu/published/workflow?id=4c81726bde25c36a, https://usegalaxy.eu/published/workflow?id=5e4774036aa20b80, https://usegalaxy.eu/published/workflow?id=607ca3a9d45bd080, https://usegalaxy.eu/published/workflow?id=612dc5bdf388585f, https://usegalaxy.eu/published/workflow?id=6306656ec10bd18f, https://usegalaxy.eu/published/workflow?id=6766bed39f614b7c, https://usegalaxy.eu/published/workflow?id=68967c922de149ae, https://usegalaxy.eu/published/workflow?id=6aca8a72626c521b, https://usegalaxy.eu/published/workflow?id=6b7b86756060659b, https://usegalaxy.eu/published/workflow?id=6bd8311554412c38, https://usegalaxy.eu/published/workflow?id=6cb85fe1ad0c9f3b, https://usegalaxy.eu/published/workflow?id=6e5f0d05c91876c2, https://usegalaxy.eu/published/workflow?id=7463b26aab6a965d, https://usegalaxy.eu/published/workflow?id=78e1769f1dcb797b, https://usegalaxy.eu/published/workflow?id=7dd7908f4c8d722a, https://usegalaxy.eu/published/workflow?id=82b6871682f1659a, https://usegalaxy.eu/published/workflow?id=8a85663218676b59, https://usegalaxy.eu/published/workflow?id=8af41219411062ad, https://usegalaxy.eu/published/workflow?id=8fc1ea9e94bc723d, https://usegalaxy.eu/published/workflow?id=912b81c444e35045, https://usegalaxy.eu/published/workflow?id=9a8b5e99ca9500e3, https://usegalaxy.eu/published/workflow?id=9c0132dd81297afe, https://usegalaxy.eu/published/workflow?id=9ef76d764d9961b2, https://usegalaxy.eu/published/workflow?id=a4d6b9dc6b396933, https://usegalaxy.eu/published/workflow?id=a657b412b37b971b, https://usegalaxy.eu/published/workflow?id=b73fa5f8c0403454, https://usegalaxy.eu/published/workflow?id=b89cf3cb6a25c999, https://usegalaxy.eu/published/workflow?id=ba3a5d59b3879764, https://usegalaxy.eu/published/workflow?id=c4119ea7ffd29094, https://usegalaxy.eu/published/workflow?id=c6b6ba35e5b6500a, https://usegalaxy.eu/published/workflow?id=c750484145c9903b, https://usegalaxy.eu/published/workflow?id=cd675ab32d3e7833, https://usegalaxy.eu/published/workflow?id=cefc49c13ff73231, https://usegalaxy.eu/published/workflow?id=d0e062aee910086a, https://usegalaxy.eu/published/workflow?id=d1d5a6bd6571d47f, https://usegalaxy.eu/published/workflow?id=d2a9d4eb5b3c72a2, https://usegalaxy.eu/published/workflow?id=d5756e3ebfa285ef, https://usegalaxy.eu/published/workflow?id=d9e7a940b2d410bc, https://usegalaxy.eu/published/workflow?id=df926c5ab8d27192, https://usegalaxy.eu/published/workflow?id=eb54512829d8509c, https://usegalaxy.eu/published/workflow?id=edea08c943ff9c5e, https://usegalaxy.eu/published/workflow?id=f0bec337f9998289, https://usegalaxy.eu/published/workflow?id=f34c76e2d8045725, https://usegalaxy.eu/published/workflow?id=fc42cc9467c6ee8d, https://usegalaxy.org.au/published/workflow?id=1b9bfe7ce484fdc2, https://usegalaxy.org.au/published/workflow?id=33922db405a97cbb, https://usegalaxy.org.au/published/workflow?id=ba217a34d7e1b5ee, https://usegalaxy.org.au/published/workflow?id=c2f449e69d06ccf5, https://usegalaxy.org.au/published/workflow?id=f9f685d6150e48c5, https://usegalaxy.org/published/workflow?id=e97da2da9e0290a7, https://workflowhub.eu/workflows/1225?version=1, https://workflowhub.eu/workflows/1394?version=1, https://workflowhub.eu/workflows/1396?version=1, https://workflowhub.eu/workflows/1399?version=1, https://workflowhub.eu/workflows/1429?version=1, https://workflowhub.eu/workflows/1435?version=1, https://workflowhub.eu/workflows/1443?version=1, https://workflowhub.eu/workflows/1450?version=1 |
microbiome/clinical-mp-2-discovery, proteomics/clinical-mp-2-discovery, proteomics/metaproteomics, proteomics/metaquantome-data-creation, proteomics/protein-id-sg-ps, proteomics/proteogenomics-dbsearch |
|
pepxml_to_xls |
|
Convert PepXML to Tabular |
2015-01-24 |
|
|
|
|
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pepxml_to_xls |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pepxml_to_xls |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
percolator |
batched_set_list_creator, percolator, percolator_input_converters, pout2mzid |
Percolator |
2016-04-12 |
|
3.5 |
percolator |
3.7.1 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/percolator |
|
|
|
|
0 |
4 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
0 |
7 |
7 |
268 |
378 |
0 |
0 |
0 |
0 |
4 |
4 |
1251 |
1251 |
0 |
0 |
0 |
0 |
1629 |
1519 |
11 |
11 |
|
|
|
phabox |
phabox_cherry, phabox_contamination, phabox_end_to_end, phabox_phagcn, phabox_phamer, phabox_phatyp, phabox_phavip, phabox_tree, phabox_votu |
Identify and analyze phage contigs in metagenomic data |
2024-11-12 |
https://github.com/KennthShang/PhaBOX |
2.1.11 |
phabox |
2.1.12 |
To update |
Metagenomics |
Sequence assembly, Taxonomic classification, Visualisation |
Sequence assembly, Taxonomic classification, Visualisation |
Metagenomics, Microbial ecology, Sequence assembly, Taxonomy |
Metagenomics, Microbial ecology, Sequence assembly, Taxonomy |
ufz |
https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/tools/phabox |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/phabox |
phabox |
PhaBOX |
Web server for identifying and characterizing phage contigs in metagenomic data. |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
phi_toolkit_report |
phi_toolkit_report |
Phage host interaction toolkit report generator |
2025-06-04 |
https://git.ufz.de/borimcor/phage-host-analysis |
0.2.0 |
bioconductor-biostrings |
2.74.0 |
To update |
Metagenomics |
|
|
|
|
ufz |
https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/tools/phi-toolkit |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/phi-toolkit |
|
|
|
|
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
pindel |
pindel |
Pindel detects genome-wide structural variation. |
2021-09-29 |
http://artbio.fr |
0.2.5b9 |
pindel |
0.2.5b9 |
Up-to-date |
Variant Analysis |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel |
https://github.com/ARTbio/tools-artbio/tree/main/tools/pindel |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
plot_tools_astro_tool |
plot_tools_astro_tool |
Plot Tools |
2024-11-22 |
|
0.0.1+galaxy0 |
pandas |
|
To update |
Astronomy |
|
|
|
|
astroteam |
https://github.com/esg-epfl-apc/tools-astro/tree/main/tools |
https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/plot-tools |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
https://workflowhub.eu/workflows/1369?version=1 |
|
|
pmd_fdr |
pmd_fdr |
Calculate Precursor Mass Discrepancy (PMD) for MS/MS |
2019-10-01 |
https://github.com/slhubler/PMD-FDR-for-Galaxy-P |
1.4.0 |
r-base |
|
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pmd_fdr |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pmd_fdr |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
positions2snv_alignment |
positions2snv_alignment |
Generate alignment of SNVs from SNVPhyl variant table. |
2016-11-04 |
https://snvphyl.readthedocs.io/en/latest/ |
1.8.2 |
snvphyl-tools |
1.8.2 |
Up-to-date |
Variant Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/snvphyl-galaxy |
https://github.com/phac-nml/snvphyl-galaxy/tree/development/tools/snvphyl-tools/positions2snv_alignment |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
positions2snv_invariant_alignment |
positions2snv_invariant_alignment |
Generate alignment of SNVs and non-variant positions from SNVPhyl variant table. |
2016-11-07 |
https://snvphyl.readthedocs.io/en/latest/ |
1.8.2 |
snvphyl-tools |
1.8.2 |
Up-to-date |
Variant Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/snvphyl-galaxy |
https://github.com/phac-nml/snvphyl-galaxy/tree/development/tools/snvphyl-tools/positions2snv_invariant_alignment |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
probecoverage |
probecoverage |
computes and plots read coverage of genomic regions by sequencing datasets |
2017-09-22 |
http://artbio.fr |
0.22.0 |
pysam |
0.23.3 |
To update |
Sequence Analysis, Genomic Interval Operations, Graphics, Statistics |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/probecoverage |
https://github.com/ARTbio/tools-artbio/tree/main/tools/probecoverage |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
proteinpilot |
convert_windows_newlines, proteinpilot, proteinpilot_group_extractor, proteinpilot_tabular, proteinpilot_xml |
|
2015-01-24 |
|
0.1 |
|
|
To update |
|
|
|
|
|
galaxyp |
|
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteinpilot |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
proteomics_moff |
proteomics_moff |
moFF (a modest Feature Finder) extracts MS1 intensities from RAW and mzML spectrum files. |
2017-12-11 |
https://github.com/compomics/moFF |
2.0.3 |
moff |
2.0.3 |
Up-to-date |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/moFF |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/moFF |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
19 |
35 |
343 |
787 |
0 |
0 |
0 |
0 |
4 |
4 |
157 |
157 |
0 |
0 |
0 |
0 |
944 |
500 |
39 |
23 |
|
|
|
proteomiqon_joinquantpepionswithproteins |
proteomiqon_joinquantpepionswithproteins |
The tool JoinQuantPepIonsWithProteins combines results from ProteinInference and PSMBasedQuantification. |
2021-09-16 |
https://csbiology.github.io/ProteomIQon/tools/JoinQuantPepIonsWithProteins.html |
0.0.1 |
proteomiqon-joinquantpepionswithproteins |
0.0.2 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_joinquantpepionswithproteins |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_joinquantpepionswithproteins |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
5 |
5 |
372 |
372 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
372 |
372 |
5 |
5 |
|
|
|
proteomiqon_labeledproteinquantification |
proteomiqon_labeledproteinquantification |
The tool LabeledProteinQuantification estimates protein abundances using quantified peptide ions. |
2021-09-16 |
https://csbiology.github.io/ProteomIQon/tools/LabeledProteinQuantification.html |
0.0.1 |
proteomiqon-labeledproteinquantification |
0.0.3 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_labeledproteinquantification |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_labeledproteinquantification |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
8 |
8 |
16 |
16 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
16 |
16 |
8 |
8 |
|
|
|
proteomiqon_labelfreeproteinquantification |
proteomiqon_labelfreeproteinquantification |
The tool LabelFreeProteinQuantification estimates protein abundances using quantified peptide ions. |
2021-10-13 |
https://csbiology.github.io/ProteomIQon/tools/LabelfreeProteinQuantification.html |
0.0.1 |
proteomiqon-labelfreeproteinquantification |
0.0.3 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_labelfreeproteinquantification |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_labelfreeproteinquantification |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
6 |
6 |
8 |
8 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8 |
8 |
6 |
6 |
|
|
|
proteomiqon_mzmltomzlite |
proteomiqon_mzmltomzlite |
The tool MzMLToMzLite allows to convert mzML files to mzLite files. |
2021-06-30 |
https://csbiology.github.io/ProteomIQon/tools/MzMLToMzLite.html |
0.0.8 |
proteomiqon-mzmltomzlite |
0.0.8 |
Up-to-date |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomIQon_MzMLToMzLite |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_mzmltomzlite |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
9 |
9 |
722 |
722 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
722 |
722 |
9 |
9 |
|
|
|
proteomiqon_peptidedb |
proteomiqon_peptidedb |
The tool ProteomIQon PeptideDB creates a peptide database in the SQLite format. |
2021-07-04 |
https://csbiology.github.io/ProteomIQon/tools/PeptideDB.html |
0.0.7 |
proteomiqon-peptidedb |
0.0.7 |
Up-to-date |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_peptidedb |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_peptidedb |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
12 |
12 |
96 |
96 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
96 |
96 |
12 |
12 |
|
|
|
proteomiqon_peptidespectrummatching |
proteomiqon_peptidespectrummatching |
Given raw an MS run in the mzLite format, this tool iterates across all MS/MS scans, determines precursor charge states and possible peptide spectrum matches using reimplementations of SEQUEST,Andromeda and XTandem. |
2021-07-15 |
https://csbiology.github.io/ProteomIQon/tools/PeptideSpectrumMatching.html |
0.0.7 |
proteomiqon-peptidespectrummatching |
0.0.7 |
Up-to-date |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_peptidespectrummatching |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_peptidespectrummatching |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
5 |
5 |
686 |
686 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
686 |
686 |
5 |
5 |
|
|
|
proteomiqon_proteininference |
proteomiqon_proteininference |
MS-based shotgun proteomics estimates protein abundances using a proxy: peptides. The process of 'Protein Inference' is concerned with the mapping of identified peptides to the proteins they putatively originated from. |
2021-07-09 |
https://csbiology.github.io/ProteomIQon/tools/ProteinInference.html |
0.0.7 |
proteomiqon-proteininference |
0.0.7 |
Up-to-date |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_proteininference |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_proteininference |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
6 |
6 |
89 |
89 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
89 |
89 |
6 |
6 |
|
|
|
proteomiqon_psmbasedquantification |
proteomiqon_psmbasedquantification |
The PSMBasedQuantification tool was designed to allow label-free quantification as well as quantification of full metabolic labeled samples. |
2021-07-09 |
https://csbiology.github.io/ProteomIQon/tools/PSMBasedQuantification.html |
0.0.8 |
proteomiqon-psmbasedquantification |
0.0.9 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
4 |
4 |
604 |
604 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
604 |
604 |
4 |
4 |
|
|
|
proteomiqon_psmstatistics |
proteomiqon_psmstatistics |
The PSMStatistics tool utilizes semi supervised machine learning techniques to integrate search engine scores as well as the mentioned quality scores into one single consensus score. |
2021-07-09 |
https://csbiology.github.io/ProteomIQon/tools/PSMStatistics.html |
0.0.8 |
proteomiqon-psmstatistics |
0.0.8 |
Up-to-date |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmstatistics |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmstatistics |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
6 |
6 |
694 |
694 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
694 |
694 |
6 |
6 |
|
|
|
proteore_venn_diagram |
proteore_venn_diagram |
ProteoRE JVenn Diagram |
2021-05-17 |
|
2021.06.08 |
python |
|
To update |
Proteomics |
|
|
|
|
galaxyp |
|
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteore_venn_diagram |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
15 |
15 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
15 |
15 |
1 |
1 |
|
|
|
protxml_to_xls |
protxml_to_xls |
|
2015-01-24 |
|
0.1.0 |
trans_proteomic_pipeline |
|
To update |
|
|
|
|
|
galaxyp |
|
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/protxml_to_xls |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
psm_eval |
psm_eval |
|
2015-01-24 |
|
0.1.0 |
binaries_for_psm_eval |
|
To update |
|
|
|
|
|
galaxyp |
|
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/psm_eval |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
psm_to_sam |
PSMtoSAM |
PSM to SAM |
2017-10-06 |
https://bioconductor.org/packages/release/bioc/html/proBAMr.html |
1.3.2.1 |
r-base |
|
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/psm2sam |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/probam_suite/psm2sam |
|
|
|
|
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
psm_validation |
psmvalidator |
Validate PSM from Ion Fragmentation |
2020-10-13 |
https://github.com/galaxyproteomics/psm_fragments.git |
1.0.3 |
|
|
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/psm_validation |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/psm_validation |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
4 |
4 |
20 |
20 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
20 |
20 |
4 |
4 |
|
|
|
psy_maps |
psy_maps |
Visualization of regular geographical data on a map with psyplot |
2019-03-15 |
https://github.com/Chilipp/psy-maps |
1.3.1 |
python |
|
To update |
Visualization, Climate Analysis |
|
|
|
|
climate |
https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps |
https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
68 |
68 |
367 |
557 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
557 |
367 |
68 |
68 |
https://dev.workflowhub.eu/workflows/1138?version=2, https://usegalaxy.eu/published/workflow?id=21363a774a7575f0, https://usegalaxy.eu/published/workflow?id=392a5d91ac221104, https://usegalaxy.eu/published/workflow?id=6df53b44018b2235, https://workflowhub.eu/workflows/1441?version=1 |
climate/climate-101 |
|
ptxqc |
maxquant_ptxqc |
Quality control reports for MaxQuant results |
2025-04-16 |
https://github.com/cbielow/PTXQC |
1.1.2 |
r-ptxqc |
|
To update |
Proteomics |
Validation |
Validation |
Proteomics |
Proteomics |
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ptxqc |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ptxqc |
ptxqc |
PTXQC |
PTXQC is a quality control pipeline for proteomics results generated by MaxQuant. |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
pyprophet |
pyprophet_export, pyprophet_merge, pyprophet_peptide, pyprophet_protein, pyprophet_score, pyprophet_subsample |
Semi-supervised learning and scoring of OpenSWATH results. |
2015-02-06 |
https://github.com/PyProphet/pyprophet |
2.1.4 |
pyprophet |
3.0.1 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyprophet |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyprophet |
|
|
|
|
0 |
5 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
6 |
6 |
0 |
33 |
33 |
2626 |
2626 |
0 |
0 |
0 |
0 |
4 |
4 |
809 |
809 |
0 |
0 |
0 |
0 |
3435 |
3435 |
37 |
37 |
https://dev.workflowhub.eu/workflows/1031?version=1, https://dev.workflowhub.eu/workflows/1180?version=2, https://workflowhub.eu/workflows/1463?version=1 |
proteomics/DIA_Analysis_OSW |
|
pyteomics |
mztab2tsv |
Tools using the pyteomics library |
2021-01-15 |
https://pyteomics.readthedocs.io/en/latest/ |
4.4.1 |
pyteomics |
4.7.5 |
To update |
Proteomics, Metabolomics |
Protein identification |
Protein identification |
Proteomics, Proteomics experiment |
Proteomics, Proteomics experiment |
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pyteomics |
pyteomics |
Pyteomics |
Framework for proteomics data analysis, supporting mzML, MGF, pepXML and more. |
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
4 |
4 |
92 |
92 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
92 |
92 |
4 |
4 |
|
|
|
quantp |
quantp |
Correlation between protein and transcript abundance |
2018-09-13 |
|
1.1.2 |
r-data.table |
1.11.6 |
To update |
Proteomics |
|
|
|
|
galaxyp |
|
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/quantp |
|
|
|
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
17 |
23 |
165 |
242 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
242 |
165 |
23 |
17 |
|
|
|
quantwiz_iq |
quantwiz_iq |
Isobaric Quantitation using QuantWiz-IQ |
2020-01-21 |
https://sourceforge.net/projects/quantwiz/ |
2.0 |
quantwiz-iq |
2.0 |
Up-to-date |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/quantwiz_iq |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/quantwiz_iq |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
3 |
3 |
29 |
32 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
32 |
29 |
3 |
3 |
|
|
|
query |
query |
Execute an SQL statement on a set of tables |
2020-12-09 |
|
0.2 |
click |
|
To update |
Text Manipulation |
|
|
|
|
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/query |
https://github.com/RECETOX/galaxytools/tree/master/tools/query |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
qupath_roi_splitter |
qupath_roi_splitter |
Split ROI coordinates of QuPath TMA annotation by cell type |
2023-04-12 |
https://github.com/npinter/ROIsplitter |
0.3.2 |
geojson |
|
To update |
Imaging |
|
|
|
|
galaxyp |
hhttps://github.com/npinter/ROIsplitter |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/qupath_roi_splitter |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
9 |
9 |
181 |
181 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
181 |
181 |
9 |
9 |
|
|
|
ramclustr |
ramclustr, ramclustr_define_experiment |
|
2020-11-05 |
https://rdrr.io/cran/RAMClustR/ |
1.3.1 |
r-ramclustr |
1.3.1 |
Up-to-date |
Metabolomics |
Imputation, Standardisation and normalisation, Clustering, Correlation |
Imputation, Standardisation and normalisation, Clustering, Correlation |
Metabolomics |
Metabolomics |
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr |
https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr |
ramclustr |
RAMClustR |
A feature clustering algorithm for non-targeted mass spectrometric metabolomics data. |
|
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
25 |
25 |
71 |
71 |
13 |
13 |
31 |
31 |
3 |
3 |
500 |
500 |
37 |
37 |
257 |
257 |
859 |
859 |
78 |
78 |
https://dev.workflowhub.eu/workflows/1119?version=2, https://usegalaxy.eu/published/workflow?id=3086366b744e8da9, https://usegalaxy.fr/published/workflow?id=1407c1703f360f07, https://workflowhub.eu/workflows/1582?version=1 |
metabolomics/gc_ms_with_xcms |
|
rawtools |
rawtools |
Raw Tools |
2019-02-28 |
https://github.com/kevinkovalchik/RawTools |
|
rawtools |
2.0.4 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/rawtools |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/rawtools |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
33 |
36 |
137 |
183 |
0 |
0 |
0 |
0 |
15 |
15 |
477 |
477 |
0 |
0 |
0 |
0 |
660 |
614 |
51 |
48 |
|
|
|
rcx_boxplot |
rcx_boxplot |
recetox-boxplot is a tool for plotting boxplots from a tabular/csv/parquet data file. |
2025-01-31 |
https://github.com/RECETOX/galaxytools |
3.5.1 |
r-ggplot2 |
2.2.1 |
To update |
Visualization |
|
|
|
|
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools |
https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_boxplot |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
rcx_tk |
rcx-tk |
Tools to process metadata or alkane files. |
2024-08-01 |
https://github.com/RECETOX/rcx-tk |
0.1.0 |
rcx-tk |
0.1.0 |
Up-to-date |
Metabolomics |
|
|
|
|
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/rcx-tk/ |
https://github.com/RECETOX/galaxytools/tree/master/tools/rcx-tk |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
reactome_pathwaymatcher |
reactome_pathwaymatcher |
Reactome Pathway Matcher |
2018-06-08 |
https://github.com/LuisFranciscoHS/PathwayMatcher |
|
pathwaymatcher |
1.9.1 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pathwaymatcher |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pathwaymatcher |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
66 |
83 |
165 |
258 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
258 |
165 |
83 |
66 |
|
|
|
recetox-aplcms |
recetox_aplcms_align_features, recetox_aplcms_compute_clusters, recetox_aplcms_compute_template, recetox_aplcms_correct_time, recetox_aplcms_generate_feature_table, recetox_aplcms_merge_known_table, recetox_aplcms_recover_weaker_signals, recetox_aplcms_remove_noise |
Peak detection tool for HRMS profile data. |
2021-06-17 |
https://github.com/RECETOX/recetox-aplcms |
0.13.4 |
r-recetox-aplcms |
0.14.1 |
To update |
Metabolomics |
Chromatographic alignment, Quantification, Peak detection, Feature extraction, Alignment |
Chromatographic alignment, Quantification, Peak detection, Feature extraction, Alignment |
Metabolomics |
Metabolomics |
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms |
https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms |
recetox-aplcms |
recetox-aplcms |
recetox-aplcms is a tool for peak detection in mass spectrometry data. The tool performs (1) noise removal, (2) peak detection, (3) retention time drift correction, (4) peak alignment and (5) weaker signal recovery as well as (6) suspect screening. |
|
0 |
8 |
8 |
8 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8 |
0 |
0 |
6 |
6 |
1508 |
1508 |
0 |
0 |
0 |
0 |
1 |
1 |
202 |
202 |
3 |
3 |
928 |
928 |
2638 |
2638 |
10 |
10 |
https://usegalaxy.eu/published/workflow?id=3086366b744e8da9 |
|
|
recetox-msfinder |
recetox_msfinder |
|
2022-11-28 |
https://github.com/RECETOX/recetox-msfinder |
v3.5.2 |
|
|
To update |
Metabolomics |
Annotation |
Annotation |
Metabolomics |
Metabolomics |
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_msfinder |
https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_msfinder |
recetox-msfinder |
recetox-msfinder |
This is a modified copy of MS-FINDER with source code modifications to make the tool accessible in Galaxy.MS-FINDER - software for structure elucidation of unknown spectra with hydrogen rearrangement (HR) rulesThe program supports molecular formula prediction, metabolie class prediction, and structure elucidation for EI-MS and MS/MS spectra, and the assembly is licensed under the CC-BY 4.0. |
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 |
7 |
70 |
70 |
0 |
0 |
0 |
0 |
1 |
1 |
57 |
57 |
7 |
7 |
19 |
19 |
146 |
146 |
15 |
15 |
https://workflowhub.eu/workflows/888?version=2 |
|
|
recetox-xmsannotator |
recetox_xmsannotator_advanced |
|
2021-07-13 |
https://github.com/RECETOX/recetox-xMSannotator |
0.10.0 |
r-recetox-xmsannotator |
0.10.0 |
Up-to-date |
Metabolomics |
Expression profile pathway mapping, Structure comparison, Isotopic distributions calculation, Annotation |
Expression profile pathway mapping, Structure comparison, Isotopic distributions calculation, Annotation |
|
|
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/recetox-xmsannotator |
https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_xmsannotator |
recetox-xmsannotator |
recetox-xMSannotator |
Annotation tool for untargeted LCMS1 data. Uses a database and adduct list for compound annotation and intensity networks, isotopic patterns and pathways for annotation scoring. |
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
133 |
133 |
0 |
0 |
0 |
0 |
133 |
133 |
2 |
2 |
|
|
|
regex_find_replace |
regex1, regexColumn1 |
Use python regular expressions to find and replace text |
2017-01-13 |
|
1.0.3 |
python |
|
To update |
Text Manipulation |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/regex_find_replace |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/regex_find_replace |
|
|
|
|
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
780 |
803 |
89919 |
90483 |
648 |
648 |
19509 |
19509 |
137 |
217 |
4680 |
6501 |
33 |
33 |
569 |
569 |
117062 |
114677 |
1701 |
1598 |
https://dev.workflowhub.eu/workflows/1001?version=1, https://dev.workflowhub.eu/workflows/1042?version=1, https://dev.workflowhub.eu/workflows/1077?version=2, https://dev.workflowhub.eu/workflows/1083?version=1, https://dev.workflowhub.eu/workflows/1087?version=2, https://dev.workflowhub.eu/workflows/1090?version=2, https://dev.workflowhub.eu/workflows/1096?version=2, https://dev.workflowhub.eu/workflows/1173?version=2, https://dev.workflowhub.eu/workflows/1177?version=2, https://dev.workflowhub.eu/workflows/1195?version=2, https://dev.workflowhub.eu/workflows/1201?version=2, https://dev.workflowhub.eu/workflows/1206?version=1, https://dev.workflowhub.eu/workflows/1210?version=2, https://dev.workflowhub.eu/workflows/1228?version=1, https://dev.workflowhub.eu/workflows/1229?version=1, https://dev.workflowhub.eu/workflows/1230?version=1, https://dev.workflowhub.eu/workflows/1233?version=1, https://dev.workflowhub.eu/workflows/1257?version=1, https://dev.workflowhub.eu/workflows/1264?version=2, https://dev.workflowhub.eu/workflows/1283?version=2, https://dev.workflowhub.eu/workflows/1287?version=2, https://dev.workflowhub.eu/workflows/1292?version=2, https://dev.workflowhub.eu/workflows/1338?version=1, https://dev.workflowhub.eu/workflows/1357?version=1, https://dev.workflowhub.eu/workflows/1363?version=1, https://dev.workflowhub.eu/workflows/1383?version=1, https://dev.workflowhub.eu/workflows/1385?version=2, https://dev.workflowhub.eu/workflows/1386?version=1, https://dev.workflowhub.eu/workflows/1398?version=1, https://usegalaxy.eu/published/workflow?id=0909859a02040efc, https://usegalaxy.eu/published/workflow?id=09c7069ae409c362, https://usegalaxy.eu/published/workflow?id=0c6dd9e75d9a2130, https://usegalaxy.eu/published/workflow?id=152223c8aed27357, https://usegalaxy.eu/published/workflow?id=1590085d315aa80e, https://usegalaxy.eu/published/workflow?id=17916f0229e3c868, https://usegalaxy.eu/published/workflow?id=1b72af1870c540d6, https://usegalaxy.eu/published/workflow?id=1d4e81b51eae43c4, https://usegalaxy.eu/published/workflow?id=22c4a7a4d41a3f06, https://usegalaxy.eu/published/workflow?id=2a73d658446747de, https://usegalaxy.eu/published/workflow?id=2ae4a83327615155, https://usegalaxy.eu/published/workflow?id=344cd3a3c2ce5302, https://usegalaxy.eu/published/workflow?id=376119528377a3ae, https://usegalaxy.eu/published/workflow?id=39afbf843b5513bf, https://usegalaxy.eu/published/workflow?id=3a8150c81b90a3a7, https://usegalaxy.eu/published/workflow?id=466bdd8ba7b67264, https://usegalaxy.eu/published/workflow?id=48fe9c4de045d414, https://usegalaxy.eu/published/workflow?id=4bd0827030df02a3, https://usegalaxy.eu/published/workflow?id=4ddf2ec5c460d622, https://usegalaxy.eu/published/workflow?id=4f245ac304ab76d9, https://usegalaxy.eu/published/workflow?id=5d401d357500617f, https://usegalaxy.eu/published/workflow?id=60e0b2a28a900178, https://usegalaxy.eu/published/workflow?id=64abcddeb516a712, https://usegalaxy.eu/published/workflow?id=6aa2891bd2b41f32, https://usegalaxy.eu/published/workflow?id=749bb05ec8674bec, https://usegalaxy.eu/published/workflow?id=799b924edd3c401b, https://usegalaxy.eu/published/workflow?id=86900be4282d4b1d, https://usegalaxy.eu/published/workflow?id=8bc1c3b9e665ea37, https://usegalaxy.eu/published/workflow?id=9a657909d6191203, https://usegalaxy.eu/published/workflow?id=a018307be3563f28, https://usegalaxy.eu/published/workflow?id=a2c46deea34d9d80, https://usegalaxy.eu/published/workflow?id=a2f36d4dd48d8ec2, https://usegalaxy.eu/published/workflow?id=a705370bc2c13d5c, https://usegalaxy.eu/published/workflow?id=a7638e7f908fd90d, https://usegalaxy.eu/published/workflow?id=b1f68ff8158d0b85, https://usegalaxy.eu/published/workflow?id=b2975bb705d3e851, https://usegalaxy.eu/published/workflow?id=b3c0eba755f269b2, https://usegalaxy.eu/published/workflow?id=b9c938d1af08124b, https://usegalaxy.eu/published/workflow?id=c58941443cec9380, https://usegalaxy.eu/published/workflow?id=c5de0b794849e1b1, https://usegalaxy.eu/published/workflow?id=c5e6047b3b256b06, https://usegalaxy.eu/published/workflow?id=c8bc4af6dd3b5d02, https://usegalaxy.eu/published/workflow?id=cd675ab32d3e7833, https://usegalaxy.eu/published/workflow?id=cdf2f02428f5f83f, https://usegalaxy.eu/published/workflow?id=d0a809f0880d7ec0, https://usegalaxy.eu/published/workflow?id=d0e062aee910086a, https://usegalaxy.eu/published/workflow?id=d1fe868a20a3a0a3, https://usegalaxy.eu/published/workflow?id=d215a2e554fd83bc, https://usegalaxy.eu/published/workflow?id=d33ab07e4cf44f8c, https://usegalaxy.eu/published/workflow?id=d375fb9af8d46793, https://usegalaxy.eu/published/workflow?id=dd73bdcbac8649a3, https://usegalaxy.eu/published/workflow?id=e2391c40d24d403f, https://usegalaxy.eu/published/workflow?id=f05754467a439134, https://usegalaxy.eu/published/workflow?id=f689faf267fbe504, https://usegalaxy.eu/published/workflow?id=f6a763951d815944, https://usegalaxy.eu/published/workflow?id=fc42cc9467c6ee8d, https://usegalaxy.fr/published/workflow?id=41264142d3c00016, https://usegalaxy.fr/published/workflow?id=8b1678200a1d157a, https://usegalaxy.org.au/published/workflow?id=0dff588f31f1dfd6, https://usegalaxy.org.au/published/workflow?id=0e11619979c2830c, https://usegalaxy.org.au/published/workflow?id=0ebaaecf61dfc921, https://usegalaxy.org.au/published/workflow?id=157e7614ae18849b, https://usegalaxy.org.au/published/workflow?id=20d472fc5563a640, https://usegalaxy.org.au/published/workflow?id=244ea5e94237ebad, https://usegalaxy.org.au/published/workflow?id=25d52afddaa3451b, https://usegalaxy.org.au/published/workflow?id=3c1bf73067334071, https://usegalaxy.org.au/published/workflow?id=4f837b7f90d5ebac, https://usegalaxy.org.au/published/workflow?id=65250d6b30d4bc7c, https://usegalaxy.org.au/published/workflow?id=69d91340fc7effa2, https://usegalaxy.org.au/published/workflow?id=76a0a3af8de11622, https://usegalaxy.org.au/published/workflow?id=7cd4fcc8e06ce4fd, https://usegalaxy.org.au/published/workflow?id=857e482acfcb2dba, https://usegalaxy.org.au/published/workflow?id=92fcdd490831c6c5, https://usegalaxy.org.au/published/workflow?id=a335b9c9103b57ad, https://usegalaxy.org.au/published/workflow?id=aa1d123c0a0929f3, https://usegalaxy.org.au/published/workflow?id=b60922a253df6654, https://usegalaxy.org.au/published/workflow?id=b9fd488b0938d323, https://usegalaxy.org.au/published/workflow?id=cf5ab8fe4e2c0859, https://usegalaxy.org.au/published/workflow?id=d5a3fd1faa3f0a41, https://usegalaxy.org.au/published/workflow?id=ebf88e79c4f094ba, https://usegalaxy.org.au/published/workflow?id=eda40b58616a0fe4, https://usegalaxy.org.au/published/workflow?id=f946d722f7c27479, https://usegalaxy.org/published/workflow?id=0dc387dc861bdb61, https://usegalaxy.org/published/workflow?id=29ba77708cdafe0f, https://usegalaxy.org/published/workflow?id=2d3063882d8239ff, https://usegalaxy.org/published/workflow?id=336d74481d2f721a, https://usegalaxy.org/published/workflow?id=347571ba3b281bf4, https://usegalaxy.org/published/workflow?id=38911ba6f66d80f6, https://usegalaxy.org/published/workflow?id=39810594e5c332d5, https://usegalaxy.org/published/workflow?id=3e703abaeb870f6f, https://usegalaxy.org/published/workflow?id=3ef08553982f6ffc, https://usegalaxy.org/published/workflow?id=4ca9319c98be08f8, https://usegalaxy.org/published/workflow?id=574e42683dc3961b, https://usegalaxy.org/published/workflow?id=6a3e47124e32e260, https://usegalaxy.org/published/workflow?id=6d778eeb176d563c, https://usegalaxy.org/published/workflow?id=76b2c4762dd61d03, https://usegalaxy.org/published/workflow?id=a8b9252fad5fe06a, https://usegalaxy.org/published/workflow?id=b28789b6a0e1f5c9, https://usegalaxy.org/published/workflow?id=b92e0ee710d167b2, https://usegalaxy.org/published/workflow?id=cb810cdaa4915f4b, https://usegalaxy.org/published/workflow?id=e12324f5e3b930fd, https://usegalaxy.org/published/workflow?id=e336bca259abd474, https://usegalaxy.org/published/workflow?id=fbf75fbb72b488bd, https://workflowhub.eu/workflows/1060?version=1, https://workflowhub.eu/workflows/1061?version=1, https://workflowhub.eu/workflows/1063?version=5, https://workflowhub.eu/workflows/117?version=1, https://workflowhub.eu/workflows/1199?version=2, https://workflowhub.eu/workflows/1208?version=1, https://workflowhub.eu/workflows/1356?version=1, https://workflowhub.eu/workflows/1407?version=1, https://workflowhub.eu/workflows/1432?version=1, https://workflowhub.eu/workflows/1437?version=1, https://workflowhub.eu/workflows/1442?version=1, https://workflowhub.eu/workflows/1450?version=1, https://workflowhub.eu/workflows/1457?version=1, https://workflowhub.eu/workflows/1479?version=1, https://workflowhub.eu/workflows/1486?version=1, https://workflowhub.eu/workflows/1487?version=2, https://workflowhub.eu/workflows/1492?version=2, https://workflowhub.eu/workflows/1518?version=1, https://workflowhub.eu/workflows/1520?version=1, https://workflowhub.eu/workflows/1524?version=1, https://workflowhub.eu/workflows/1535?version=1, https://workflowhub.eu/workflows/1542?version=1, https://workflowhub.eu/workflows/1552?version=1, https://workflowhub.eu/workflows/1601?version=1, https://workflowhub.eu/workflows/1630?version=1, https://workflowhub.eu/workflows/1635?version=1, https://workflowhub.eu/workflows/1636?version=1, https://workflowhub.eu/workflows/1656?version=1, https://workflowhub.eu/workflows/1663?version=1, https://workflowhub.eu/workflows/1680?version=1, https://workflowhub.eu/workflows/1696?version=1, https://workflowhub.eu/workflows/1704?version=1, https://workflowhub.eu/workflows/1788?version=1, https://workflowhub.eu/workflows/1790?version=1, https://workflowhub.eu/workflows/1792?version=1, https://workflowhub.eu/workflows/358?version=1, https://workflowhub.eu/workflows/363?version=2, https://workflowhub.eu/workflows/660?version=1 |
climate/pangeo, data-science/data-manipulation-olympics, ecology/ENA_Biodiv_submission, ecology/Ecoregionalization_tutorial, ecology/PAMPA-toolsuite-tutorial, ecology/biodiversity-data-exploration, ecology/ecoregiolifetraits, ecology/marine_omics_bgc, ecology/openrefine_gbif, ecology/phylogeny-data-prep, ecology/regionalGAM, genome-annotation/gene-centric, introduction/data-manipulation-olympics, microbiome/pathogen-detection-from-nanopore-foodborne-data, proteomics/metaquantome-data-creation, proteomics/neoantigen-fusion-database-generation, proteomics/neoantigen-non-reference-database-generation, proteomics/neoantigen-variant-annotation, proteomics/proteogenomics-dbcreation, sequence-analysis/Manage_AB1_Sanger, single-cell/EBI-retrieval, single-cell/bulk-music-2-preparescref, single-cell/bulk-music-3-preparebulk, single-cell/scrna-case_monocle3-trajectories, single-cell/scrna-data-ingest, variant-analysis/trio-analysis |
|
regionalgam |
regionalgam_ab_index, regionalgam_autocor_acf, regionalgam_flight_curve, regionalgam_glmmpql, regionalgam_gls_adjusted, regionalgam_gls, regionalgam_plot_trend |
|
2019-06-18 |
https://github.com/RetoSchmucki/regionalGAM |
1.5 |
r-mgcv |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam |
|
|
|
|
0 |
0 |
7 |
7 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
7 |
7 |
0 |
32 |
39 |
374 |
546 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
546 |
374 |
39 |
32 |
https://dev.workflowhub.eu/workflows/1222?version=1, https://usegalaxy.eu/published/workflow?id=8e92a65d3307d87e, https://workflowhub.eu/workflows/1707?version=1 |
ecology/regionalGAM |
|
rem_complex |
rem_complex |
Removes molecular coordination complexes. |
2023-11-21 |
https://github.com/RECETOX/galaxytools |
1.0.0 |
pandas |
|
To update |
Metabolomics |
|
|
|
|
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/rem_complex |
https://github.com/RECETOX/galaxytools/tree/master/tools/rem_complex |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
23 |
23 |
0 |
0 |
0 |
0 |
1 |
1 |
76 |
76 |
0 |
0 |
0 |
0 |
99 |
99 |
3 |
3 |
https://workflowhub.eu/workflows/888?version=2 |
|
|
rename_annotated_feature |
rename_annotated_feature |
Update column names in an abundance table using a annotation table with spectral matching results |
2024-05-13 |
https://github.com/RECETOX/galaxytools/ |
1.0.0 |
pandas |
|
To update |
Metabolomics |
|
|
|
|
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/rename_annotated_feature |
https://github.com/RECETOX/galaxytools/tree/master/tools/rename_annotated_feature |
|
|
|
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
1 |
1 |
38 |
38 |
0 |
0 |
0 |
0 |
40 |
40 |
3 |
3 |
https://usegalaxy.eu/published/workflow?id=3086366b744e8da9 |
|
|
repenrich |
edger-repenrich, repenrich |
Repeat element profiling |
2017-05-22 |
https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich |
2.31.1 |
|
|
To update |
Transcriptomics |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich |
https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich |
|
|
|
|
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
36 |
37 |
1794 |
1935 |
0 |
0 |
0 |
0 |
1935 |
1794 |
37 |
36 |
|
|
|
repenrich2 |
edger-repenrich2, repenrich2 |
Repeat element profiling using bowtie2 aligner |
2024-04-20 |
https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich2 |
2.31.1 |
|
|
To update |
Transcriptomics |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich2 |
https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich2 |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
retip |
retip_apply, retip_descriptors, retip_filter_rt, retip_train |
|
2020-09-07 |
https://github.com/PaoloBnn/Retip |
0.5.4 |
|
|
To update |
Metabolomics |
Retention time prediction, Spectrum calculation, Deisotoping, Formatting, Deposition |
Retention time prediction, Spectrum calculation, Deisotoping, Formatting, Deposition |
Metabolomics, Proteomics experiment, Machine learning, Cheminformatics, Chemistry |
Metabolomics, Proteomics experiment, Machine learning, Cheminformatics, Chemistry |
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/retip |
https://github.com/RECETOX/galaxytools/tree/master/tools/retip |
retip |
Retip |
Retention Time Prediction for Compound Annotation in Untargeted Metabolomics.Retip is an R package for predicting Retention Time (RT) for small molecules in a high pressure liquid chromatography (HPLC) Mass Spectrometry analysis.Retip - Retention Time prediction for Metabolomics.Retip: Retention Time Prediction for Compound Annotation in Untargeted Metabolomics Paolo Bonini, Tobias Kind, Hiroshi Tsugawa, Dinesh Kumar Barupal, and Oliver Fiehn Analytical Chemistry 2020 92 (11), 7515-7522 DOI: 10.1021/acs.analchem.9b05765. |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
retrieve_bold |
retrieve_bold |
Search a list of sequences in BOLD (Barcode of Life Data System) from specified taxa list and markers |
2024-06-21 |
https://anaconda.org/conda-forge/r-bold |
1.3.0 |
r-base |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/wpearman1996/MARES_database_pipeline/tree/master |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/retrieve_bold |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
10 |
10 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
10 |
4 |
4 |
|
|
|
retrieve_ensembl_bed |
retrieve_ensembl_bed |
Retrieve cDNA features from Ensembl REST API in BED format |
2018-01-14 |
http://rest.ensembl.org/ |
0.1.0 |
|
|
To update |
Data Source |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteogenomics/retrieve_ensembl_bed |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteogenomics/retrieve_ensembl_bed |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
revertr2orientationinbam |
revertR2orientationInBam |
Revert the mapped orientation of R2 mates in a bam. |
2019-04-17 |
|
0.0.2 |
samtools |
1.22.1 |
To update |
SAM |
|
|
|
|
lldelisle |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/revertR2orientationInBam |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/revertR2orientationInBam |
|
|
|
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
11 |
11 |
40 |
40 |
32 |
32 |
538 |
538 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
578 |
578 |
43 |
43 |
https://usegalaxy.eu/published/workflow?id=6ebd09100fc98878, https://usegalaxy.eu/published/workflow?id=c98a14fcf5998159, https://usegalaxy.eu/published/workflow?id=d3494c6124f820b2, https://usegalaxy.eu/published/workflow?id=ef1d11b79a2e1727, https://usegalaxy.eu/published/workflow?id=fa53b172def3fe75, https://usegalaxy.org.au/published/workflow?id=5cd9b9338e75f254, https://usegalaxy.org/published/workflow?id=1f28e673ea725541, https://usegalaxy.org/published/workflow?id=53fdff74729a6780, https://usegalaxy.org/published/workflow?id=778a8867b0a6ea4f, https://usegalaxy.org/published/workflow?id=868acaf49d0743ec, https://usegalaxy.org/published/workflow?id=93e69c7e7a857ca3, https://usegalaxy.org/published/workflow?id=f3c8093c5b8a7233, https://workflowhub.eu/workflows/401?version=13 |
|
|
riassigner |
riassigner, riassigner_from_comment |
|
2021-08-19 |
https://github.com/RECETOX/RIAssigner |
0.4.1 |
riassigner |
0.5.0 |
To update |
Metabolomics |
Standardisation and normalisation |
Standardisation and normalisation |
Metabolomics, Compound libraries and screening, Data submission, annotation and curation |
Metabolomics, Compound libraries and screening, Data submission, annotation and curation |
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/riassigner |
https://github.com/RECETOX/galaxytools/tree/master/tools/riassigner |
riassigner |
RIAssigner |
RIAssigner is a python tool for retention index (RI) computation for GC-MS data. |
|
1 |
2 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
23 |
23 |
59 |
59 |
5 |
5 |
16 |
16 |
1 |
1 |
77 |
77 |
24 |
24 |
150 |
150 |
302 |
302 |
53 |
53 |
https://dev.workflowhub.eu/workflows/1119?version=2, https://usegalaxy.eu/published/workflow?id=3086366b744e8da9, https://usegalaxy.fr/published/workflow?id=1407c1703f360f07, https://workflowhub.eu/workflows/1582?version=1 |
metabolomics/gc_ms_with_xcms |
|
rmassbank |
rmassbank |
RMassBank is an R package for processing tandem MS files and building of MassBank records. |
2021-02-25 |
https://github.com/MassBank/RMassBank |
3.0.0 |
python |
|
To update |
Metabolomics |
|
|
|
|
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/rmassbank |
https://github.com/RECETOX/galaxytools/tree/master/tools/rmassbank |
|
|
|
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
68 |
68 |
0 |
0 |
0 |
0 |
68 |
68 |
1 |
1 |
|
|
|
rsem |
extract_transcript_to_gene_map_from_trinity, purgegtffrommultichromgenes, rsembowtie2, rsembowtie |
transcript quantification from RNA-Seq data |
2017-12-18 |
https://github.com/deweylab/RSEM |
|
rsem |
1.3.3 |
To update |
Transcriptomics, RNA |
|
|
|
|
artbio |
https://github.com/artbio/tools-artbio/tree/master/tools/rsem |
https://github.com/ARTbio/tools-artbio/tree/main/tools/rsem |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
161 |
196 |
361 |
460 |
0 |
0 |
0 |
0 |
10 |
39 |
48 |
146 |
0 |
0 |
0 |
0 |
606 |
409 |
235 |
171 |
|
|
|
salmon_kallisto_mtx_to_10x |
_salmon_kallisto_mtx_to_10x |
Transforms .mtx matrix and associated labels into a format compatible with tools expecting old-style 10X data |
2019-11-07 |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary |
0.0.1+galaxy6 |
scipy |
|
To update |
Sequence Analysis |
|
|
|
|
ebi-gxa |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/salmon-kallisto-mtx-to-10x |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
219 |
219 |
788 |
791 |
82 |
82 |
345 |
345 |
3 |
3 |
3 |
3 |
0 |
0 |
0 |
0 |
1139 |
1136 |
304 |
304 |
https://dev.workflowhub.eu/workflows/1024?version=1, https://dev.workflowhub.eu/workflows/1025?version=1, https://dev.workflowhub.eu/workflows/1263?version=1, https://usegalaxy.eu/published/workflow?id=1e2d27fae8a41ac1, https://usegalaxy.eu/published/workflow?id=83ae28e23099a3f6, https://usegalaxy.eu/published/workflow?id=9a9bbd8046da7b19, https://usegalaxy.eu/published/workflow?id=c6adc3b665828a6f, https://usegalaxy.eu/published/workflow?id=df455b86fff16116, https://usegalaxy.eu/published/workflow?id=e06934a35fc18f2c, https://usegalaxy.eu/published/workflow?id=f944ad0c35d1a472, https://usegalaxy.org/published/workflow?id=1fe6b25825d9b736, https://usegalaxy.org/published/workflow?id=a2a924b871b1c96d, https://workflowhub.eu/workflows/1533?version=1, https://workflowhub.eu/workflows/1537?version=1 |
single-cell/scrna-case_alevin |
|
sambamba |
sambamba_sample_or_filter |
filter BAM/SAM on flags, fields, tags, and region, or down-sample, or slice BAM/SAM |
2020-05-19 |
http://artbio.fr |
0.7.1+galaxy1 |
sambamba |
1.0.1 |
To update |
SAM |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/master/tools/sambamba |
https://github.com/ARTbio/tools-artbio/tree/main/tools/sambamba |
|
|
|
|
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
21 |
21 |
836 |
836 |
0 |
0 |
0 |
0 |
836 |
836 |
21 |
21 |
|
|
|
saqc |
saqc, saqc_executor |
System for automated Quality Control |
2025-01-13 |
https://git.ufz.de/rdm-software/saqc |
2.6.0 |
saqc |
|
To update |
Statistics |
|
|
|
|
ufz |
https://github.com/Helmholtz-UFZ/galaxy-tools/blob/main/tools/saqc/ |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/saqc |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
sashimi_plot |
sashimi_plot |
Generates a sashimi plot from bam files. |
2019-08-21 |
http://artbio.fr |
0.1.1 |
python |
|
To update |
RNA, Transcriptomics, Graphics, Visualization |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/master/tools/sashimi_plot |
https://github.com/ARTbio/tools-artbio/tree/main/tools/sashimi_plot |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
scaffold |
scaffold, scaffold_export |
|
2015-01-24 |
|
0.1.0 |
scaffold |
|
To update |
|
|
|
|
|
galaxyp |
|
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/scaffold |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
scanpy_scripts |
anndata_ops, scanpy_filter_cells, scanpy_filter_genes, scanpy_find_cluster, scanpy_find_markers, scanpy_find_variable_genes, scanpy_integrate_bbknn, scanpy_integrate_combat, scanpy_integrate_harmony, scanpy_integrate_mnn, scanpy_plot_scrublet, scanpy_multiplet_scrublet, scanpy_compute_graph, scanpy_normalise_data, scanpy_parameter_iterator, scanpy_plot_embed, scanpy_plot_trajectory, scanpy_read_10x, scanpy_regress_variable, scanpy_run_diffmap, scanpy_run_dpt, scanpy_run_fdg, scanpy_run_paga, scanpy_run_pca, scanpy_run_tsne, scanpy_run_umap, scanpy_scale_data |
scanpy-scripts, command-line wrapper scripts around Scanpy. |
2018-11-05 |
https://scanpy.readthedocs.io |
1.9.3 |
scanpy-scripts |
1.9.301 |
To update |
Transcriptomics, Sequence Analysis, RNA |
|
|
|
|
ebi-gxa |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/tertiary-analysis/scanpy |
|
|
|
|
27 |
27 |
27 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
14 |
13 |
0 |
470 |
479 |
51597 |
52275 |
185 |
185 |
8511 |
8511 |
47 |
47 |
3203 |
3203 |
0 |
0 |
0 |
0 |
63989 |
63311 |
711 |
702 |
https://dev.workflowhub.eu/workflows/1014?version=1, https://dev.workflowhub.eu/workflows/1015?version=1, https://dev.workflowhub.eu/workflows/1016?version=1, https://dev.workflowhub.eu/workflows/1017?version=1, https://dev.workflowhub.eu/workflows/1021?version=1, https://dev.workflowhub.eu/workflows/1023?version=1, https://dev.workflowhub.eu/workflows/1210?version=2, https://dev.workflowhub.eu/workflows/1212?version=1, https://dev.workflowhub.eu/workflows/1219?version=2, https://dev.workflowhub.eu/workflows/1225?version=1, https://dev.workflowhub.eu/workflows/1238?version=1, https://dev.workflowhub.eu/workflows/1243?version=2, https://dev.workflowhub.eu/workflows/1246?version=2, https://dev.workflowhub.eu/workflows/1261?version=1, https://dev.workflowhub.eu/workflows/1272?version=2, https://dev.workflowhub.eu/workflows/1343?version=2, https://dev.workflowhub.eu/workflows/1377?version=1, https://usegalaxy.eu/published/workflow?id=030e978022e19375, https://usegalaxy.eu/published/workflow?id=0909859a02040efc, https://usegalaxy.eu/published/workflow?id=0d7c643d7720ee31, https://usegalaxy.eu/published/workflow?id=0e6e181234b48121, https://usegalaxy.eu/published/workflow?id=171d6fca2c3339e2, https://usegalaxy.eu/published/workflow?id=1d4e81b51eae43c4, https://usegalaxy.eu/published/workflow?id=37e51e215684bdcc, https://usegalaxy.eu/published/workflow?id=50f8693fac7e134b, https://usegalaxy.eu/published/workflow?id=5b8e4ae3447934d9, https://usegalaxy.eu/published/workflow?id=715ca378c1d68de3, https://usegalaxy.eu/published/workflow?id=71f7725b261c6c83, https://usegalaxy.eu/published/workflow?id=73aa794916b91bb2, https://usegalaxy.eu/published/workflow?id=73b41b975da284d5, https://usegalaxy.eu/published/workflow?id=767f8c990316b66a, https://usegalaxy.eu/published/workflow?id=78dc6fca5b58ec05, https://usegalaxy.eu/published/workflow?id=8f677efac7100097, https://usegalaxy.eu/published/workflow?id=9a0275211e74698a, https://usegalaxy.eu/published/workflow?id=9d15b328d8408715, https://usegalaxy.eu/published/workflow?id=ae79275d3568ad31, https://usegalaxy.eu/published/workflow?id=aeb0f5b74e51f5c2, https://usegalaxy.eu/published/workflow?id=b3cf397fd4d1bea8, https://usegalaxy.eu/published/workflow?id=bcec217b62ccc7af, https://usegalaxy.eu/published/workflow?id=d7c0c972c471d514, https://usegalaxy.eu/published/workflow?id=decd6ad0b41289ef, https://usegalaxy.eu/published/workflow?id=e2391c40d24d403f, https://usegalaxy.eu/published/workflow?id=e4e969e9943cdaa5, https://usegalaxy.eu/published/workflow?id=e97bdba3834ac465, https://usegalaxy.eu/published/workflow?id=ebfd7cabc0dc97f8, https://usegalaxy.eu/published/workflow?id=f05754467a439134, https://usegalaxy.eu/published/workflow?id=f27abf3c623d3062, https://usegalaxy.eu/published/workflow?id=ffbbb905164d4c11, https://usegalaxy.org/published/workflow?id=802f5ff14a924e42, https://usegalaxy.org/published/workflow?id=dd43ae9a5b303086, https://workflowhub.eu/workflows/1077?version=1, https://workflowhub.eu/workflows/1356?version=1, https://workflowhub.eu/workflows/1362?version=1, https://workflowhub.eu/workflows/1490?version=1, https://workflowhub.eu/workflows/1496?version=1, https://workflowhub.eu/workflows/1510?version=1, https://workflowhub.eu/workflows/1529?version=1, https://workflowhub.eu/workflows/1535?version=1, https://workflowhub.eu/workflows/1539?version=1, https://workflowhub.eu/workflows/1548?version=1, https://workflowhub.eu/workflows/1550?version=1, https://workflowhub.eu/workflows/1551?version=1, https://workflowhub.eu/workflows/1565?version=1, https://workflowhub.eu/workflows/1745?version=2, https://workflowhub.eu/workflows/467?version=4, https://workflowhub.eu/workflows/468?version=3, https://workflowhub.eu/workflows/512?version=2, https://workflowhub.eu/workflows/513?version=3, https://workflowhub.eu/workflows/646?version=2 |
imaging/multiplex-tissue-imaging-TMA, single-cell/EBI-retrieval, single-cell/bulk-music-2-preparescref, single-cell/scanpy_parameter_iterator, single-cell/scatac-standard-processing-snapatac2, single-cell/scrna-case_alevin-combine-datasets, single-cell/scrna-case_basic-pipeline, single-cell/scrna-case_cell-cycle, single-cell/scrna-case_trajectories, single-cell/scrna-data-ingest, single-cell/scrna-ncbi-anndata |
|
sceasy |
sceasy_convert |
Convert scRNA data object between popular formats |
2019-10-14 |
|
0.0.5 |
r-sceasy |
0.0.7 |
To update |
Transcriptomics |
|
|
|
|
ebi-gxa |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/tertiary-analysis/sceasy |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
286 |
286 |
1379 |
1381 |
83 |
83 |
470 |
470 |
3 |
3 |
147 |
147 |
0 |
0 |
0 |
0 |
1998 |
1996 |
372 |
372 |
https://dev.workflowhub.eu/workflows/1024?version=1, https://dev.workflowhub.eu/workflows/1025?version=1, https://dev.workflowhub.eu/workflows/1263?version=1, https://usegalaxy.eu/published/workflow?id=0e6e181234b48121, https://usegalaxy.eu/published/workflow?id=1e2d27fae8a41ac1, https://usegalaxy.eu/published/workflow?id=9a9bbd8046da7b19, https://usegalaxy.eu/published/workflow?id=a0f1959a9f4533f7, https://usegalaxy.eu/published/workflow?id=bcec217b62ccc7af, https://usegalaxy.eu/published/workflow?id=c6adc3b665828a6f, https://usegalaxy.eu/published/workflow?id=df455b86fff16116, https://usegalaxy.eu/published/workflow?id=e06934a35fc18f2c, https://usegalaxy.eu/published/workflow?id=f944ad0c35d1a472, https://usegalaxy.org/published/workflow?id=1fe6b25825d9b736, https://usegalaxy.org/published/workflow?id=a2a924b871b1c96d, https://workflowhub.eu/workflows/1533?version=1, https://workflowhub.eu/workflows/1537?version=1 |
single-cell/EBI-retrieval, single-cell/scrna-case_alevin, single-cell/scrna-data-ingest |
|
scripting tools |
singularity_scriptrunner |
suite_scripting |
2023-07-29 |
https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/scripting/ |
0.3 |
|
|
To update |
Text Manipulation |
|
|
|
|
mbernt |
https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/scripting/ |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/scripting |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
sdmpredictors |
sdmpredictors_list_layers |
Terrestrial and marine predictors for species distribution modelling. |
2024-03-29 |
https://cran.r-project.org/web/packages/sdmpredictors/index.html |
0.2.15 |
r-base |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/sdmpredictors |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/sdmpredictors |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
2 |
2 |
|
|
|
sequence_format_converter |
sequence_format_converter |
various fasta to tabular conversions |
2017-09-04 |
http://artbio.fr |
2.2.0 |
python |
|
To update |
Convert Formats, Fasta Manipulation |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/master/tools/sequence_format_converter |
https://github.com/ARTbio/tools-artbio/tree/main/tools/sequence_format_converter |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
sgwb_astro_tool |
sgwb_astro_tool |
SGWB |
2024-04-17 |
|
0.0.1+galaxy0 |
ipython |
|
To update |
Astronomy |
|
|
|
|
astroteam |
https://github.com/esg-epfl-apc/tools-astro/tree/main/tools |
https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/sgwb |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
7 |
7 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 |
7 |
3 |
3 |
https://workflowhub.eu/workflows/815?version=2, https://workflowhub.eu/workflows/831?version=1 |
|
|
shift_longitudes |
shyft_longitudes |
Shift longitudes ranging from 0. and 360 degrees to -180. and 180. degrees |
2019-03-15 |
https://github.com/NordicESMhub/galaxy-tools/blob/master/tools/shift-longitudes/ |
0.1.0 |
python |
|
To update |
Climate Analysis |
|
|
|
|
climate |
https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/shift-longitudes |
https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/shift-longitudes |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
5 |
5 |
54 |
80 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
80 |
54 |
5 |
5 |
|
|
|
sixgill |
sixgill_build, sixgill_filter, sixgill_makefasta, sixgill_merge |
Six-frame Genome-Inferred Libraries for LC-MS/MS |
2016-10-11 |
|
0.2.4 |
sixgill |
0.2.4 |
Up-to-date |
Proteomics, MetaProteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/sixgill |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/sixgill |
|
|
|
|
0 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
0 |
38 |
38 |
316 |
316 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
316 |
316 |
38 |
38 |
https://usegalaxy.eu/published/workflow?id=799b924edd3c401b |
|
|
small_rna_clusters |
small_rna_clusters |
clusters small rna reads in alignment BAM files |
2019-10-06 |
http://artbio.fr |
1.3.0 |
pysam |
0.23.3 |
To update |
RNA, SAM, Graphics, Next Gen Mappers |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_clusters |
https://github.com/ARTbio/tools-artbio/tree/main/tools/small_rna_clusters |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
small_rna_maps |
small_rna_maps |
Generates small read maps from alignment BAM files |
2017-07-23 |
http://artbio.fr |
3.1.1 |
numpy |
|
To update |
RNA, SAM, Graphics, Next Gen Mappers |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_maps |
https://github.com/ARTbio/tools-artbio/tree/main/tools/small_rna_maps |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
small_rna_signatures |
overlapping_reads, signature |
Computes the tendency of small RNAs to overlap with each other. |
2017-08-28 |
http://artbio.fr |
3.4.2 |
pysam |
0.23.3 |
To update |
RNA |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_signatures |
https://github.com/ARTbio/tools-artbio/tree/main/tools/small_rna_signatures |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
smithsonian_volcanoes |
smithsonian_volcanoes |
Retrieve data from Volcanoes of the World (VOTW) Database |
2019-04-15 |
https://volcano.si.edu/gvp_votw.cfm |
0.1.0 |
python |
|
To update |
Retrieve Data |
|
|
|
|
climate |
https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/smithsonian-volcanoes |
https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/smithsonian-volcanoes |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
snv_matrix |
snvmatrix |
Generate matrix of SNV distances |
2016-01-21 |
https://snvphyl.readthedocs.io/en/latest/ |
1.8.2 |
snvphyl-tools |
1.8.2 |
Up-to-date |
Sequence Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/snvphyl-galaxy |
https://github.com/phac-nml/snvphyl-galaxy/tree/development/tools/snvphyl-tools/snv_matrix |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
snvtocnv |
sequenzaindex, snvtocnv |
infer copy number variations from a vcf file with SNVs using R sequenza |
2021-03-07 |
http://artbio.fr |
3.0.0+galaxy1 |
sequenza-utils |
3.0.0 |
To update |
Variant Analysis |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/master/tools/snvtocnv |
https://github.com/ARTbio/tools-artbio/tree/main/tools/snvtocnv |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
source_extractor_astro_tool |
source_extractor_astro_tool |
Tool to extract luminous sources from astronomical sky images |
2025-07-18 |
|
0.0.1+galaxy0 |
astropy |
|
To update |
Astronomy |
|
|
|
|
astroteam |
https://github.com/esg-epfl-apc/tools-astro/tree/main/tools |
https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/source-extractor |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
spec2vec |
spec2vec_similarity, spec2vec_training |
Mass spectra similarity scoring using a trained Spec2Vec model. |
2022-11-29 |
https://github.com/iomega/spec2vec |
0.8.0 |
spec2vec |
0.8.0 |
Up-to-date |
Metabolomics |
Spectrum calculation, Spectral library search, Database search, Natural product identification |
Spectrum calculation, Spectral library search, Database search, Natural product identification |
Proteomics experiment, Metabolomics, Natural language processing, Proteomics |
Proteomics experiment, Metabolomics, Natural language processing, Proteomics |
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/spec2vec |
https://github.com/RECETOX/galaxytools/tree/master/tools/spec2vec |
spec2vec |
Spec2Vec |
Improved mass spectral similarity scoring through learning of structural relationships.Spec2vec is a novel spectral similarity score inspired by a natural language processing algorithm -- Word2Vec. Where Word2Vec learns relationships between words in sentences, spec2vec does so for mass fragments and neutral losses in MS/MS spectra. The spectral similarity score is based on spectral embeddings learnt from the fragmental relationships within a large set of spectral data.Analysis and benchmarking of mass spectra similarity measures using gnps data set. |
|
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
114 |
114 |
0 |
0 |
0 |
0 |
115 |
115 |
2 |
2 |
|
|
|
spectrast2spectrast_irt |
gp_spectrast2spectrast_irt |
Filter from spectraST files to swath input files |
2015-04-13 |
|
0.1.0 |
msproteomicstools |
0.11.0 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/spectrast2spectrast_irt |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/spectrast2spectrast_irt |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
spectrast2tsv |
gp_spectrast2tsv |
Filter from spectraST files to swath input files |
2015-02-06 |
|
0.1.0 |
msproteomicstools |
0.11.0 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/spectrast2tsv |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/spectrast2tsv |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
spocc_occ |
spocc_occ |
Get species occurences data |
2019-05-23 |
https://cran.r-project.org/web/packages/spocc/index.html |
1.2.2 |
|
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/spocc |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/spocc |
|
|
|
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
126 |
140 |
732 |
896 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
11 |
19 |
19 |
915 |
751 |
151 |
137 |
https://dev.workflowhub.eu/workflows/1235?version=1, https://dev.workflowhub.eu/workflows/1268?version=2, https://usegalaxy.eu/published/workflow?id=3b0803542deff026, https://usegalaxy.eu/published/workflow?id=b0b6c8756070650b, https://workflowhub.eu/workflows/1670?version=1, https://workflowhub.eu/workflows/1687?version=1, https://workflowhub.eu/workflows/404?version=1 |
climate/earth_system, ecology/gbif_cleaning, ecology/species-distribution-modeling |
|
sr_bowtie |
bowtieForSmallRNA |
bowtie wrapper tool to align small RNA sequencing reads |
2017-09-02 |
http://artbio.fr |
2.3.1 |
bowtie |
1.3.1 |
To update |
RNA, Next Gen Mappers |
|
|
Microbiology, Biology |
Microbiology |
artbio |
https://github.com/ARTbio/tools-artbio/tree/master/tools/sr_bowtie |
https://github.com/ARTbio/tools-artbio/tree/main/tools/sr_bowtie |
sr_bowtie |
sr_bowtie |
Bowtie_ is a short read aligner designed to be ultrafast and memory-efficient. It is developed by Ben Langmead and Cole Trapnell. Please cite: Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology 10:R25... _Bowtie: http://bowtie-bio.sourceforge.net/index.shtmlA generic "Map with Bowtie for Illumina" Galaxy tool is available in the main Galaxy distribution.However, this Bowtie wrapper tool only takes FASTQ files as inputs.The sRbowtie wrapper works with short (-v bowtie mode) reads inputs, in fasta or fastq format, and proposes a simplified set of configurations suited to small RNA analysis. |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
98 |
98 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
98 |
98 |
2 |
2 |
|
|
|
sr_bowtie_dataset_annotation |
sr_bowtie_dataset_annotation |
Maps iteratively small RNA sequencing datasets to reference sequences. |
2017-09-11 |
http://artbio.fr |
2.8 |
bowtie |
1.3.1 |
To update |
RNA |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/master/tools/sr_bowtie_dataset_annotation |
https://github.com/ARTbio/tools-artbio/tree/main/tools/sr_bowtie_dataset_annotation |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
srs_tools |
srs_diversity_maps, srs_global_indices, srs_process_data, srs_spectral_indices, srs_pca, srs_preprocess_s2, srs_metadata |
Compute biodiversity indicators for remote sensing data from Sentinel 2 |
2022-11-16 |
|
0.0.1 |
r-base |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/Marie59/Sentinel_2A/srs_tools |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/srs_tools |
|
|
|
|
4 |
0 |
7 |
7 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 |
0 |
0 |
7 |
7 |
255 |
255 |
4 |
4 |
44 |
44 |
0 |
0 |
0 |
0 |
1 |
1 |
16 |
16 |
315 |
315 |
12 |
12 |
https://dev.workflowhub.eu/workflows/1211?version=1, https://usegalaxy.eu/published/workflow?id=1d2cd0af01a30a46, https://usegalaxy.eu/published/workflow?id=da88448ab15d167d, https://workflowhub.eu/workflows/1669?version=1, https://workflowhub.eu/workflows/657?version=1 |
ecology/remote-sensing |
|
stoceps |
stoceps_filteringsp, stoceps_glm, stoceps_glm_group, stoceps_maketablecarrer, stoceps_trend_indic |
Tools to analyse STOC data. |
2019-09-26 |
|
0.0.2 |
|
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/Alanamosse/Galaxy-E/tree/stoctool/tools/stoc |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/stoc |
|
|
|
|
0 |
0 |
5 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
5 |
0 |
21 |
21 |
338 |
338 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
338 |
338 |
21 |
21 |
https://usegalaxy.eu/published/workflow?id=01274dfdbdfcaa88 |
|
|
suite_cell_types_analysis |
ct_build_cell_ontology_dict, ct_check_labels, ct_combine_tool_outputs, ct_downsample_cells, ct_get_consensus_outputs, ct_get_empirical_dist, ct_get_tool_perf_table, ct_get_tool_pvals |
Tools for analysis of predictions from scRNAseq cell type classification tools, see https://github.com/ebi-gene-expression-group/cell-types-analysis |
2020-04-07 |
|
1.1.1 |
cell-types-analysis |
0.1.11 |
To update |
Transcriptomics, RNA, Statistics |
|
|
|
|
ebi-gxa |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/tertiary-analysis/cell-types-analysis |
|
|
|
|
0 |
0 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
9 |
9 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
9 |
9 |
4 |
4 |
https://usegalaxy.eu/published/workflow?id=4091c0e2b471fc92, https://usegalaxy.eu/published/workflow?id=6a2c373b3b5d97df, https://usegalaxy.eu/published/workflow?id=a496111beb6e23d0, https://usegalaxy.eu/published/workflow?id=d9e9424dd755729d |
|
|
suite_celltypist |
celltypist_predict |
celltypist - Automated cell type annotation |
2025-02-14 |
https://celltypist.readthedocs.io/en/latest/ |
1.6.3+galaxy1 |
celltypist |
1.7.1 |
To update |
Transcriptomics |
|
|
|
|
ebi-gxa |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/tertiary-analysis/celltypist |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
suite_decoupler |
score_genes_aucell, decoupler_pathway_inference, decoupler_pseudobulk |
decoupler - Ensemble of methods to infer biological activities |
2023-09-24 |
https://decoupler-py.readthedocs.io/en/latest/ |
1.4.0+galaxy3 |
decoupler |
1.5.0 |
To update |
Transcriptomics |
|
|
|
|
ebi-gxa |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/tertiary-analysis/decoupler |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
9 |
9 |
120 |
120 |
1 |
1 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
122 |
122 |
10 |
10 |
https://dev.workflowhub.eu/workflows/1395?version=1, https://usegalaxy.eu/published/workflow?id=04df470a38b10e94, https://usegalaxy.eu/published/workflow?id=c3a11e1ac1aa8383, https://usegalaxy.eu/published/workflow?id=c7b9fb6872444809, https://usegalaxy.eu/published/workflow?id=d1b3b62e7f91e217, https://usegalaxy.eu/published/workflow?id=e04be1ab5a16eb9f, https://usegalaxy.org.au/published/workflow?id=5fe66b29dcfb22ab, https://usegalaxy.org/published/workflow?id=13a3954b8894e1b1, https://workflowhub.eu/workflows/1207?version=2, https://workflowhub.eu/workflows/1556?version=1 |
single-cell/pseudobulk-analysis |
|
suite_dropletutils |
dropletutils_empty_drops, dropletutils_read_10x |
De-composed DropletUtils functionality tools, based on https://github.com/ebi-gene-expression-group/dropletutils-scripts and DropletUtils 1.0.3 |
2019-01-22 |
|
1.0.4 |
dropletutils-scripts |
0.0.5 |
To update |
Transcriptomics, RNA, Statistics, Sequence Analysis |
|
|
|
|
ebi-gxa |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/tertiary-analysis/dropletutils |
|
|
|
|
2 |
2 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
287 |
289 |
2123 |
2133 |
109 |
109 |
679 |
679 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
2813 |
2803 |
399 |
397 |
https://dev.workflowhub.eu/workflows/1020?version=1, https://dev.workflowhub.eu/workflows/1024?version=1, https://dev.workflowhub.eu/workflows/1025?version=1, https://dev.workflowhub.eu/workflows/1247?version=2, https://dev.workflowhub.eu/workflows/1263?version=1, https://usegalaxy.eu/published/workflow?id=1e2d27fae8a41ac1, https://usegalaxy.eu/published/workflow?id=4091c0e2b471fc92, https://usegalaxy.eu/published/workflow?id=49a6ddcba35bf085, https://usegalaxy.eu/published/workflow?id=6a2c373b3b5d97df, https://usegalaxy.eu/published/workflow?id=95fe49cafa1dff7e, https://usegalaxy.eu/published/workflow?id=9a9bbd8046da7b19, https://usegalaxy.eu/published/workflow?id=a496111beb6e23d0, https://usegalaxy.eu/published/workflow?id=c6adc3b665828a6f, https://usegalaxy.eu/published/workflow?id=dc9bfa4f633c49b4, https://usegalaxy.eu/published/workflow?id=df455b86fff16116, https://usegalaxy.eu/published/workflow?id=e06934a35fc18f2c, https://usegalaxy.eu/published/workflow?id=f474eb2f45f1d684, https://usegalaxy.eu/published/workflow?id=f944ad0c35d1a472, https://usegalaxy.org/published/workflow?id=1fe6b25825d9b736, https://usegalaxy.org/published/workflow?id=a2a924b871b1c96d, https://workflowhub.eu/workflows/1523?version=1, https://workflowhub.eu/workflows/1533?version=1, https://workflowhub.eu/workflows/1537?version=1 |
single-cell/scrna-case_alevin, single-cell/scrna-data-ingest |
|
suite_ebi_expression_atlas |
retrieve_scxa |
Tools for interacting with the EMBL-EBI Expression Atlas resource https://www.ebi.ac.uk/gxa/home https://www.ebi.ac.uk/gxa/sc/home |
2019-07-02 |
|
v0.0.2+galaxy2 |
wget |
|
To update |
Transcriptomics, Sequence Analysis |
|
|
|
|
ebi-gxa |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/tertiary-analysis/data-scxa |
|
|
|
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
284 |
290 |
1201 |
1235 |
116 |
116 |
384 |
384 |
11 |
11 |
113 |
113 |
3 |
3 |
6 |
6 |
1738 |
1704 |
420 |
414 |
https://dev.workflowhub.eu/workflows/1023?version=1, https://dev.workflowhub.eu/workflows/1210?version=2, https://dev.workflowhub.eu/workflows/1257?version=1, https://dev.workflowhub.eu/workflows/1261?version=1, https://dev.workflowhub.eu/workflows/1375?version=1, https://usegalaxy.eu/published/workflow?id=030e978022e19375, https://usegalaxy.eu/published/workflow?id=0909859a02040efc, https://usegalaxy.eu/published/workflow?id=0e6e181234b48121, https://usegalaxy.eu/published/workflow?id=1d4e81b51eae43c4, https://usegalaxy.eu/published/workflow?id=290373b2f5fb8c6c, https://usegalaxy.eu/published/workflow?id=5d31bafd82547d5d, https://usegalaxy.eu/published/workflow?id=bcec217b62ccc7af, https://usegalaxy.eu/published/workflow?id=dd73bdcbac8649a3, https://usegalaxy.eu/published/workflow?id=e2391c40d24d403f, https://usegalaxy.eu/published/workflow?id=ebfd7cabc0dc97f8, https://usegalaxy.eu/published/workflow?id=f05754467a439134, https://workflowhub.eu/workflows/1356?version=1, https://workflowhub.eu/workflows/1535?version=1, https://workflowhub.eu/workflows/1548?version=1, https://workflowhub.eu/workflows/1552?version=1, https://workflowhub.eu/workflows/1570?version=1 |
single-cell/EBI-retrieval, single-cell/bulk-music-2-preparescref, single-cell/scrna-case_FilterPlotandExplore_SeuratTools, single-cell/scrna-case_basic-pipeline |
|
suite_garnett |
garnett_check_markers, garnett_classify_cells, garnett_get_feature_genes, garnett_get_std_output, garnett_train_classifier, garnett_transform_markers, update_marker_file |
De-composed Garnett functionality tools, see https://github.com/ebi-gene-expression-group/garnett-cli and r-garnett 0.2.8 |
2020-04-03 |
|
0.2.8 |
garnett-cli |
0.0.5 |
To update |
Transcriptomics, RNA, Statistics, Sequence Analysis |
|
|
|
|
ebi-gxa |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/tertiary-analysis/garnett |
|
|
|
|
0 |
0 |
7 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
27 |
27 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
27 |
27 |
4 |
4 |
https://usegalaxy.eu/published/workflow?id=8762437178c9a3cf, https://usegalaxy.eu/published/workflow?id=d9e9424dd755729d |
|
|
suite_human_cell_atlas_tools |
hca_matrix_downloader |
Tools for interacting with the Human Cell Atlas resource https://prod.data.humancellatlas.org/explore/projects |
2019-07-02 |
|
v0.0.4+galaxy0 |
hca-matrix-downloader |
0.0.4 |
To update |
Transcriptomics, Sequence Analysis |
|
|
|
|
ebi-gxa |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/tertiary-analysis/data-hca |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
100 |
111 |
522 |
556 |
2 |
2 |
3 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
559 |
525 |
113 |
102 |
https://usegalaxy.eu/published/workflow?id=71f7725b261c6c83 |
single-cell/EBI-retrieval |
|
suite_monocle3 |
monocle3_create, monocle3_diffExp, monocle3_learnGraph, monocle3_orderCells, monocle3_partition, monocle3_plotCells, monocle3_preprocess, monocle3_reduceDim, monocle3_topmarkers |
De-composed monocle3 functionality tools, based on https://github.com/ebi-gene-expression-group/monocle-scripts and monocle3 0.1.2. |
2019-09-09 |
|
0.1.4 |
monocle3-cli |
0.0.9 |
To update |
Transcriptomics, RNA, Statistics, Sequence Analysis |
|
|
|
|
ebi-gxa |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/tertiary-analysis/monocle3 |
|
|
|
|
9 |
0 |
9 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
76 |
76 |
3665 |
3665 |
57 |
57 |
1816 |
1816 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5481 |
5481 |
133 |
133 |
https://dev.workflowhub.eu/workflows/1018?version=1, https://dev.workflowhub.eu/workflows/1228?version=1, https://dev.workflowhub.eu/workflows/1237?version=1, https://dev.workflowhub.eu/workflows/1251?version=2, https://usegalaxy.eu/published/workflow?id=35c092316cdc27d1, https://usegalaxy.eu/published/workflow?id=8762437178c9a3cf, https://usegalaxy.eu/published/workflow?id=a3a7c1853ae7047b, https://usegalaxy.eu/published/workflow?id=a7fcfab658a2cc33, https://usegalaxy.eu/published/workflow?id=d9e9424dd755729d, https://usegalaxy.eu/published/workflow?id=f689faf267fbe504, https://workflowhub.eu/workflows/1516?version=1, https://workflowhub.eu/workflows/1524?version=1, https://workflowhub.eu/workflows/1531?version=1 |
single-cell/scrna-case_monocle3-trajectories, single-cell/scrna-data-ingest |
|
suite_ogs |
ogs_addlayer, ogs_extractboundary, ogs_extractsurface, ogs_generatestructuredmesh, ogs_identifysubdomains, ogs_simulation |
A suite of tools for OpenGeoSys (ogs) |
2025-03-06 |
https://gitlab.opengeosys.org/ogs/ogs |
6.5.3 |
|
|
To update |
Geo Science |
|
|
|
|
ufz |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
suite_ogs_tools |
msh2vtu, shp2msh |
A suite of tools for OpenGeoSys (ogs) |
2025-03-03 |
https://gitlab.opengeosys.org/ogs/tools/ogstools |
0.4.0 |
ogstools |
|
To update |
Geo Science |
|
|
|
|
ufz |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
suite_pyscenic |
pyscenic_aucell, pyscenic_binarize, pyscenic_ctx, pyscenic_grn |
PySCENIC scripts based on usage at https://pyscenic.readthedocs.io/ |
2024-08-20 |
|
0.12.1 |
|
|
To update |
Transcriptomics, RNA, Sequence Analysis |
|
|
|
|
ebi-gxa |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/tertiary-analysis/pyscenic |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
suite_sc3 |
sc3_calc_biology, sc3_calc_consens, sc3_calc_dists, sc3_calc_transfs, sc3_estimate_k, sc3_kmeans, sc3_prepare |
De-composed SC3 functionality tools, based on https://github.com/ebi-gene-expression-group/bioconductor-sc3-scripts and SC3 1.8.0. |
2018-11-05 |
|
1.8.0 |
sc3-scripts |
0.0.6 |
To update |
Transcriptomics, RNA, Statistics, Sequence Analysis |
|
|
|
|
ebi-gxa |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/tertiary-analysis/sc3 |
|
|
|
|
0 |
0 |
7 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
5 |
6 |
11 |
13 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
11 |
6 |
5 |
|
|
|
suite_scater |
scater_calculate_cpm, scater_calculate_qc_metrics, scater_filter, scater_is_outlier, scater_normalize, scater_read_10x_results |
De-composed Scater functionality tools, based on https://github.com/ebi-gene-expression-group/bioconductor-scater-scripts and Scater 1.8.4. |
2018-10-11 |
|
1.10.0 |
scater-scripts |
0.0.5 |
To update |
Transcriptomics, RNA, Statistics, Sequence Analysis |
|
|
|
|
ebi-gxa |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/tertiary-analysis/scater |
|
|
|
|
1 |
2 |
6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
2 |
0 |
77 |
80 |
343 |
397 |
0 |
0 |
0 |
0 |
8 |
8 |
360 |
360 |
0 |
0 |
0 |
0 |
757 |
703 |
88 |
85 |
https://dev.workflowhub.eu/workflows/1241?version=2, https://usegalaxy.eu/published/workflow?id=f055b8fa294d4be8, https://usegalaxy.org.au/published/workflow?id=3c9140288202aa76, https://workflowhub.eu/workflows/1511?version=1 |
single-cell/scrna-scater-qc |
|
suite_scmap |
scmap_get_std_output, scmap_index_cell, scmap_index_cluster, scmap_preprocess_sce, scmap_scmap_cell, scmap_scmap_cluster, scmap_select_features |
De-composed scmap functionality tools, based on https://github.com/ebi-gene-expression-group/scmap-cli and scmap 1.6.0. |
2019-08-30 |
|
1.6.4 |
scmap-cli |
0.1.0 |
To update |
Transcriptomics, RNA, Statistics, Sequence Analysis |
|
|
|
|
ebi-gxa |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/tertiary-analysis/scmap |
|
|
|
|
0 |
0 |
7 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
11 |
11 |
114 |
114 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
114 |
114 |
11 |
11 |
https://usegalaxy.eu/published/workflow?id=6a2c373b3b5d97df, https://usegalaxy.eu/published/workflow?id=95fe49cafa1dff7e, https://usegalaxy.eu/published/workflow?id=a496111beb6e23d0, https://usegalaxy.eu/published/workflow?id=bcec217b62ccc7af, https://usegalaxy.eu/published/workflow?id=dc9bfa4f633c49b4 |
|
|
suite_scpred |
scpred_get_feature_space, scpred_get_std_output, scpred_predict_labels, scpred_train_model |
De-composed scPred functionality tools, see https://github.com/ebi-gene-expression-group/scpred-cli and r-scPred 1.0 |
2020-04-07 |
|
1.0.2 |
scpred-cli |
0.1.0 |
To update |
Transcriptomics, RNA, Statistics, Sequence Analysis |
|
|
|
|
ebi-gxa |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/tertiary-analysis/scpred |
|
|
|
|
0 |
0 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
25 |
25 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
25 |
25 |
2 |
2 |
https://usegalaxy.eu/published/workflow?id=4091c0e2b471fc92, https://usegalaxy.eu/published/workflow?id=f474eb2f45f1d684 |
|
|
suite_seurat |
seurat_convert, seurat_dim_plot, seurat_export_cellbrowser, seurat_filter_cells, seurat_find_clusters, seurat_find_markers, seurat_find_neighbours, seurat_find_variable_genes, seurat_hover_locator, seurat_integration, seurat_map_query, seurat_normalise_data, seurat_plot, seurat_read10x, seurat_run_pca, seurat_run_tsne, seurat_run_umap, seurat_scale_data, seurat_select_integration_features |
De-composed Seurat functionality tools, based on https://github.com/ebi-gene-expression-group/r-seurat-scripts and Seurat 2.3.1 |
2018-07-09 |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ |
4.0.0 |
seurat-scripts |
4.4.0 |
To update |
Transcriptomics, RNA, Statistics, Sequence Analysis |
|
|
|
|
ebi-gxa |
|
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/tertiary-analysis/seurat |
|
|
|
|
14 |
14 |
14 |
11 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
19 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
131 |
139 |
3628 |
3786 |
83 |
83 |
1776 |
1776 |
4 |
4 |
188 |
188 |
2 |
2 |
45 |
45 |
5795 |
5637 |
228 |
220 |
https://dev.workflowhub.eu/workflows/1019?version=1, https://dev.workflowhub.eu/workflows/1210?version=2, https://dev.workflowhub.eu/workflows/1255?version=2, https://dev.workflowhub.eu/workflows/1375?version=1, https://dev.workflowhub.eu/workflows/1388?version=1, https://dev.workflowhub.eu/workflows/1389?version=1, https://usegalaxy.eu/published/workflow?id=0909859a02040efc, https://usegalaxy.eu/published/workflow?id=10c5d0560b977a6f, https://usegalaxy.eu/published/workflow?id=26deb6f2521742ea, https://usegalaxy.eu/published/workflow?id=290373b2f5fb8c6c, https://usegalaxy.eu/published/workflow?id=5d31bafd82547d5d, https://usegalaxy.eu/published/workflow?id=704e6c9bc51db49f, https://usegalaxy.eu/published/workflow?id=a0f1959a9f4533f7, https://usegalaxy.eu/published/workflow?id=c52e8b5ab3e8e958, https://usegalaxy.eu/published/workflow?id=d773cbc76253afbf, https://usegalaxy.org/published/workflow?id=59554bfcad77e307, https://workflowhub.eu/workflows/1527?version=1, https://workflowhub.eu/workflows/1535?version=1, https://workflowhub.eu/workflows/1555?version=1, https://workflowhub.eu/workflows/1560?version=1, https://workflowhub.eu/workflows/1570?version=1 |
single-cell/EBI-retrieval, single-cell/scrna-case_FilterPlotandExplore_SeuratTools, single-cell/scrna-data-ingest, single-cell/scrna-seurat-pbmc3k |
|
suite_snvphyl_1_2_3 |
|
SNVPhyl suite defining all dependencies for SNVPhyl |
2015-08-05 |
|
|
|
|
To update |
Sequence Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/snvphyl-galaxy |
https://github.com/phac-nml/snvphyl-galaxy/tree/development/tools/suite_snvphyl |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
tables |
table_pandas_arithmetics, table_pandas_rename_column, table_pandas_rename_columns_regex, table_pandas_transform, table_scipy_interpolate |
Tools to manipulate and analyze data tables. |
2024-11-14 |
https://github.com/RECETOX/galaxytools |
|
scipy |
|
To update |
Metabolomics, Statistics |
|
|
|
|
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/tables |
https://github.com/RECETOX/galaxytools/tree/master/tools/tables |
|
|
|
|
0 |
0 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
tarfast5 |
tarfast5 |
produces a tar.gz archive of fast5 sequence files |
2021-05-05 |
http://artbio.fr |
0.6.1 |
pigz |
|
To update |
Nanopore |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/master/tools/tarfast5 |
https://github.com/ARTbio/tools-artbio/tree/main/tools/tarfast5 |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
terrabyte_ogc_api_processes |
terrabyte_ogc_api_processes |
This tool is a wrapper for OGC API Processes (OTB) coming from terrabyte (https://docs.terrabyte.lrz.de/). |
2024-11-11 |
https://github.com/AquaINFRA/galaxy |
0.1.0 |
r-base |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/AquaINFRA/tools-ecology/tree/terrabyte_ogc_api_process |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/terrabyte_ogc_api_processes |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
10 |
10 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
10 |
1 |
1 |
|
|
|
thermo_raw_file_converter |
thermo_raw_file_converter |
Thermo RAW file converter |
2018-09-14 |
https://github.com/compomics/ThermoRawFileParser |
1.3.4 |
thermorawfileparser |
1.4.5 |
To update |
Proteomics |
Conversion, Filtering, Peak detection |
Conversion, Filtering, Peak detection |
Proteomics, Proteomics experiment, Metabolomics |
Proteomics, Proteomics experiment, Metabolomics |
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser |
ThermoRawFileParser |
ThermoRawFileParser |
Open-source, crossplatform tool that converts Thermo RAW files into open file formats such as MGF and to the HUPO-PSI standard file format mzML |
|
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
91 |
129 |
2498 |
3030 |
0 |
0 |
0 |
0 |
20 |
20 |
1183 |
1183 |
0 |
0 |
0 |
0 |
4213 |
3681 |
149 |
111 |
https://usegalaxy.eu/published/workflow?id=3086366b744e8da9 |
|
|
topologyeditors |
gromacs_modify_topology, gromacs_extract_topology |
Set of python scripts and associated tool files that can be used to modify topology files. |
2021-12-23 |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/buildtools/topologyeditors |
0 |
python |
|
To update |
Molecular Dynamics, Computational chemistry |
|
|
|
|
chemteam |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/buildtools/topologyeditors |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/buildtools/topologyeditors |
|
|
|
|
2 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
7 |
7 |
63 |
63 |
5 |
5 |
25 |
25 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
88 |
88 |
12 |
12 |
https://usegalaxy.eu/published/workflow?id=2a1b21d39ebb6e49, https://usegalaxy.eu/published/workflow?id=3729015f676693c8, https://usegalaxy.eu/published/workflow?id=bf99d06567288766, https://usegalaxy.eu/published/workflow?id=d4d8e907e26c8587, https://workflowhub.eu/workflows/761?version=1, https://workflowhub.eu/workflows/762?version=1, https://workflowhub.eu/workflows/763?version=1, https://workflowhub.eu/workflows/764?version=1 |
|
|
translate_bed |
translate_bed |
Translate BED transcript CDS or cDNA in 3 frames |
2018-01-14 |
http://rest.ensembl.org/ |
0.1.0 |
|
|
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteogenomics/translate_bed |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteogenomics/translate_bed |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
141 |
146 |
606 |
707 |
109 |
109 |
481 |
481 |
19 |
19 |
889 |
889 |
0 |
0 |
0 |
0 |
2077 |
1976 |
274 |
269 |
https://dev.workflowhub.eu/workflows/1042?version=1, https://dev.workflowhub.eu/workflows/1201?version=2, https://dev.workflowhub.eu/workflows/1386?version=1, https://dev.workflowhub.eu/workflows/1398?version=1, https://usegalaxy.eu/published/workflow?id=17916f0229e3c868, https://usegalaxy.eu/published/workflow?id=39afbf843b5513bf, https://usegalaxy.eu/published/workflow?id=3a8150c81b90a3a7, https://usegalaxy.eu/published/workflow?id=6e6cf59bfeb938bf, https://usegalaxy.eu/published/workflow?id=a2f36d4dd48d8ec2, https://usegalaxy.eu/published/workflow?id=a7638e7f908fd90d, https://usegalaxy.org.au/published/workflow?id=0ebaaecf61dfc921, https://usegalaxy.org.au/published/workflow?id=157e7614ae18849b, https://usegalaxy.org.au/published/workflow?id=7cd4fcc8e06ce4fd, https://usegalaxy.org/published/workflow?id=6a3e47124e32e260, https://usegalaxy.org/published/workflow?id=e336bca259abd474, https://workflowhub.eu/workflows/1407?version=1, https://workflowhub.eu/workflows/1437?version=1, https://workflowhub.eu/workflows/1788?version=1 |
proteomics/neoantigen-non-reference-database-generation, proteomics/proteogenomics-dbcreation |
|
translate_bed_sequences |
translate_bed_sequences |
Perform 3 frame translation of BED file augmented with a sequence column |
2016-01-13 |
|
0.2.0 |
biopython |
1.70 |
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/translate_bed_sequences |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/translate_bed_sequences |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
16 |
21 |
50 |
69 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
69 |
50 |
21 |
16 |
|
|
|
ucsc_cell_browser |
ucsc_cell_browser |
Python pipeline and Javascript scatter plot library for single-cell datasets |
2018-09-11 |
https://cells.ucsc.edu/ |
1.0.0+galaxy1 |
ucsc-cell-browser |
1.2.15 |
To update |
Transcriptomics |
|
|
|
|
ebi-gxa |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/ucsc-cell-browser/.shed.yml |
https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/main/tools/tertiary-analysis/ucsc-cell-browser |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
172 |
183 |
915 |
982 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
982 |
915 |
183 |
172 |
https://usegalaxy.eu/published/workflow?id=5d31bafd82547d5d, https://usegalaxy.eu/published/workflow?id=71f7725b261c6c83, https://usegalaxy.eu/published/workflow?id=ebfd7cabc0dc97f8, https://usegalaxy.eu/published/workflow?id=f27abf3c623d3062 |
|
|
unipept |
unipept |
Unipept retrieves metaproteomics information |
2015-04-03 |
https://github.com/galaxyproteomics/tools-galaxyp |
6.2.4+galaxy0 |
python |
|
To update |
Proteomics |
Prediction and recognition, Visualisation |
Prediction and recognition, Visualisation |
Proteomics, Proteogenomics, Biodiversity, Workflows |
Proteomics, Proteogenomics, Biodiversity, Workflows |
galaxyp |
https://unipept.ugent.be/apidocs |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/unipept |
unipept |
Unipept |
Metaproteomics data analysis with a focus on interactive data visualizations. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
267 |
283 |
5231 |
5595 |
92 |
92 |
289 |
289 |
31 |
31 |
1199 |
1199 |
0 |
0 |
0 |
0 |
7083 |
6719 |
406 |
390 |
https://dev.workflowhub.eu/workflows/1041?version=1, https://dev.workflowhub.eu/workflows/1159?version=2, https://dev.workflowhub.eu/workflows/1177?version=2, https://dev.workflowhub.eu/workflows/1338?version=1, https://dev.workflowhub.eu/workflows/1352?version=1, https://dev.workflowhub.eu/workflows/1371?version=1, https://usegalaxy.eu/published/workflow?id=00e246ea459b0991, https://usegalaxy.eu/published/workflow?id=02700454f57eb556, https://usegalaxy.eu/published/workflow?id=0e0be913c3e27022, https://usegalaxy.eu/published/workflow?id=1706bfa819bbfa89, https://usegalaxy.eu/published/workflow?id=17a1433d0b681d4a, https://usegalaxy.eu/published/workflow?id=229a955d29bd4064, https://usegalaxy.eu/published/workflow?id=28af61ead68e0976, https://usegalaxy.eu/published/workflow?id=3e01a2c6d954ae6e, https://usegalaxy.eu/published/workflow?id=41df8c7821b5f2fc, https://usegalaxy.eu/published/workflow?id=50d85103f2275d38, https://usegalaxy.eu/published/workflow?id=58db3e1996a8f093, https://usegalaxy.eu/published/workflow?id=5e4774036aa20b80, https://usegalaxy.eu/published/workflow?id=612dc5bdf388585f, https://usegalaxy.eu/published/workflow?id=6306656ec10bd18f, https://usegalaxy.eu/published/workflow?id=6766bed39f614b7c, https://usegalaxy.eu/published/workflow?id=68967c922de149ae, https://usegalaxy.eu/published/workflow?id=6cb85fe1ad0c9f3b, https://usegalaxy.eu/published/workflow?id=6da171871d4f3fd5, https://usegalaxy.eu/published/workflow?id=755ede37d94dc456, https://usegalaxy.eu/published/workflow?id=78e1769f1dcb797b, https://usegalaxy.eu/published/workflow?id=82b6871682f1659a, https://usegalaxy.eu/published/workflow?id=8a85663218676b59, https://usegalaxy.eu/published/workflow?id=8f3cafa3bc59ff82, https://usegalaxy.eu/published/workflow?id=8fc1ea9e94bc723d, https://usegalaxy.eu/published/workflow?id=9ef76d764d9961b2, https://usegalaxy.eu/published/workflow?id=a4d6b9dc6b396933, https://usegalaxy.eu/published/workflow?id=a657b412b37b971b, https://usegalaxy.eu/published/workflow?id=ba3a5d59b3879764, https://usegalaxy.eu/published/workflow?id=bfe26679d670bb5e, https://usegalaxy.eu/published/workflow?id=c6b6ba35e5b6500a, https://usegalaxy.eu/published/workflow?id=cd675ab32d3e7833, https://usegalaxy.eu/published/workflow?id=cefc49c13ff73231, https://usegalaxy.eu/published/workflow?id=d0e062aee910086a, https://usegalaxy.eu/published/workflow?id=d148459a4d4b91f1, https://usegalaxy.eu/published/workflow?id=d9e7a940b2d410bc, https://usegalaxy.eu/published/workflow?id=df926c5ab8d27192, https://usegalaxy.eu/published/workflow?id=f0bec337f9998289, https://usegalaxy.eu/published/workflow?id=fc42cc9467c6ee8d, https://usegalaxy.org.au/published/workflow?id=050a66ff6d4c2b53, https://usegalaxy.org.au/published/workflow?id=f9f685d6150e48c5, https://usegalaxy.org/published/workflow?id=3f797bfb67130883, https://workflowhub.eu/workflows/1219?version=1, https://workflowhub.eu/workflows/1433?version=1, https://workflowhub.eu/workflows/1443?version=1, https://workflowhub.eu/workflows/1450?version=1, https://workflowhub.eu/workflows/1482?version=1 |
microbiome/clinical-mp-5-data-interpretation, proteomics/clinical-mp-5-data-interpretation, proteomics/metaproteomics, proteomics/metaquantome-data-creation |
|
uniprotxml_downloader |
uniprotxml_downloader |
Download UniProt proteome in XML or fasta format |
2016-03-08 |
https://www.uniprot.org/help/programmatic_access |
2.5.0 |
requests |
|
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/uniprotxml_downloader |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/uniprotxml_downloader |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
244 |
289 |
1548 |
1714 |
7 |
7 |
15 |
15 |
38 |
38 |
902 |
902 |
0 |
0 |
0 |
0 |
2631 |
2465 |
334 |
289 |
https://dev.workflowhub.eu/workflows/1351?version=1, https://dev.workflowhub.eu/workflows/1372?version=1, https://usegalaxy.eu/published/workflow?id=0ab3e47ebd3b520e, https://usegalaxy.eu/published/workflow?id=229a955d29bd4064, https://usegalaxy.eu/published/workflow?id=24eaa682897379c8, https://usegalaxy.eu/published/workflow?id=3e01a2c6d954ae6e, https://usegalaxy.eu/published/workflow?id=41df8c7821b5f2fc, https://usegalaxy.eu/published/workflow?id=5374daf356516a40, https://usegalaxy.eu/published/workflow?id=5be158931abca947, https://usegalaxy.eu/published/workflow?id=5e4774036aa20b80, https://usegalaxy.eu/published/workflow?id=612dc5bdf388585f, https://usegalaxy.eu/published/workflow?id=6306656ec10bd18f, https://usegalaxy.eu/published/workflow?id=6cb85fe1ad0c9f3b, https://usegalaxy.eu/published/workflow?id=71816adecac46e74, https://usegalaxy.eu/published/workflow?id=73dc2384535bf6af, https://usegalaxy.eu/published/workflow?id=82b6871682f1659a, https://usegalaxy.eu/published/workflow?id=9a60ecf98d4f8134, https://usegalaxy.eu/published/workflow?id=9ef76d764d9961b2, https://usegalaxy.eu/published/workflow?id=c6aecbdbeb27585f, https://usegalaxy.eu/published/workflow?id=cb9a26ea53ce7a27, https://usegalaxy.eu/published/workflow?id=d87fc6685e47d27d, https://usegalaxy.eu/published/workflow?id=eeb6cff210cac091, https://usegalaxy.eu/published/workflow?id=f0bec337f9998289, https://usegalaxy.org.au/published/workflow?id=9281258aefd17c0c, https://usegalaxy.org/published/workflow?id=42331381df05b956, https://workflowhub.eu/workflows/1218?version=1, https://workflowhub.eu/workflows/1425?version=1, https://workflowhub.eu/workflows/1464?version=1, https://workflowhub.eu/workflows/37?version=1, https://workflowhub.eu/workflows/38?version=1, https://workflowhub.eu/workflows/39?version=1, https://workflowhub.eu/workflows/40?version=1 |
microbiome/clinical-mp-1-database-generation, microbiome/clinical-mp-3-verification, proteomics/clinical-mp-1-database-generation, proteomics/clinical-mp-3-verification |
|
upload_roi_and_measures_to_omero |
uploadROIandMeasuresToOMERO |
Upload the ROI coordinates and the measurements to the omero server |
2022-01-18 |
|
0.0.5 |
omero-py |
5.11.1 |
To update |
Imaging |
|
|
|
|
lldelisle |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/upload_roi_and_measures_to_omero |
https://github.com/lldelisle/tools-lldelisle/tree/master/tools/upload_roi_and_measures_to_omero |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
validate_fasta_database |
validate_fasta_database |
runs Compomics database identification tool on any FASTA database, and separates valid and invalid entries based on a series of checks. |
2017-09-14 |
|
0.1.5 |
validate-fasta-database |
1.0 |
To update |
Fasta Manipulation, Proteomics |
|
|
|
|
galaxyp |
|
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/validate_fasta_database |
|
|
|
|
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
49 |
49 |
155 |
155 |
18 |
18 |
42 |
42 |
3 |
3 |
57 |
57 |
0 |
0 |
0 |
0 |
254 |
254 |
70 |
70 |
https://dev.workflowhub.eu/workflows/1384?version=1, https://usegalaxy.eu/published/workflow?id=8ef3379dded2490a, https://usegalaxy.eu/published/workflow?id=bee2a7669a7dea5b, https://usegalaxy.org.au/published/workflow?id=9365a7de314c9f85, https://usegalaxy.org/published/workflow?id=e3a30c0583183c1e, https://workflowhub.eu/workflows/1410?version=1, https://workflowhub.eu/workflows/1793?version=1 |
proteomics/neoantigen-fragpipe-discovery |
|
varscan_vaf |
varscan_vaf |
Compute variant allele frequency in vcf files generated by varscan. |
2022-11-28 |
http://artbio.fr |
0.1 |
python |
|
To update |
Variant Analysis |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/master/tools/varscan_vaf |
https://github.com/ARTbio/tools-artbio/tree/main/tools/varscan_vaf |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
vcf2snvalignment |
vcf2snvalignment |
Generates multiple alignment of variant calls |
2016-01-20 |
https://snvphyl.readthedocs.io/en/latest/ |
1.8.2 |
snvphyl-tools |
1.8.2 |
Up-to-date |
Sequence Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/snvphyl-galaxy |
https://github.com/phac-nml/snvphyl-galaxy/tree/development/tools/snvphyl-tools/vcf2snvalignment |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
verify_map |
verify_map |
Checks the mapping quality of all BAM(s) |
2015-05-15 |
https://snvphyl.readthedocs.io/en/latest/ |
1.8.2 |
snvphyl-tools |
1.8.2 |
Up-to-date |
Sequence Analysis |
|
|
|
|
nml |
https://github.com/phac-nml/snvphyl-galaxy |
https://github.com/phac-nml/snvphyl-galaxy/tree/development/tools/snvphyl-tools/verify_map |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
vibrant |
vibrant |
Virus Identification By iteRative ANnoTation |
2024-09-11 |
https://github.com/AnantharamanLab/VIBRANT |
1.2.1 |
vibrant |
1.2.1 |
Up-to-date |
Metagenomics |
Sequence trimming, Scaffolding, Genome annotation |
Sequence trimming, Scaffolding, Genome annotation |
Metagenomics, Microbial ecology, Sequence assembly, Molecular interactions, pathways and networks, Endocrinology and metabolism |
Metagenomics, Microbial ecology, Sequence assembly, Molecular interactions, pathways and networks, Endocrinology and metabolism |
ufz |
https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/tools/vibrant |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/vibrant |
VIBRANT |
VIBRANT |
Automated recovery, annotation and curation of microbial viruses, and evaluation of virome function from genomic sequences.Virus Identification By iteRative ANnoTation.Discovery Environment Applications List.Created by upendra_35, last modified on Nov 04, 2019.If you find VIBRANT useful please consider citing our preprint on bioRxiv:.Kieft, K., Zhou, Z., and Anantharaman, K. (2019). VIBRANT: Automated recovery, annotation and curation of microbial viruses, and evaluation of virome function from genomic sequences. BioRxiv 855387.VIBRANT is a tool for automated recovery and annotation of bacterial and archaeal viruses, determination of genome completeness, and characterization of virome function from metagenomic assemblies.The QuickStart tutorial provides an introduction to basic DE functionality and navigation.Please work through the tutorial and use the intercom button on the bottom right of this page if you have any questions |
|
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
19 |
19 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
19 |
19 |
4 |
4 |
|
|
|
vigiechiro |
vigiechiro_bilanenrichipf, vigiechiro_bilanenrichirp, vigiechiro_idcorrect_2ndlayer, vigiechiro_idvalid |
Tools created by the vigiechiro team to analyses and identify chiro sounds files. |
2019-03-13 |
https://www.vigienature-ecole.fr/les-observatoires/le-protocole-vigie-chiro |
0.1.1 |
|
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/vigiechiro |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/vigiechiro |
|
|
|
|
0 |
0 |
4 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
0 |
251 |
258 |
15033 |
15636 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
15636 |
15033 |
258 |
251 |
https://usegalaxy.eu/published/workflow?id=596b073ab7249aa2, https://usegalaxy.eu/published/workflow?id=c0888e0a0fb53ed3 |
|
|
virsorter |
virsorter |
VirSorter2 applies a multi-classifier, expert-guided approach to detect diverse DNA and RNA virus genomes. |
2024-06-20 |
https://github.com/jiarong/VirSorter2/ |
2.2.4 |
virsorter |
2.2.4 |
Up-to-date |
Metagenomics |
Taxonomic classification |
Taxonomic classification |
Metagenomics |
Metagenomics |
ufz |
https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/tools/virsorter |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/virsorter |
virsorter |
virsorter |
Identify DNA and RNA virus sequences. |
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
34 |
34 |
344 |
344 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
344 |
344 |
34 |
34 |
|
|
|
vmd |
|
vmd is a package for visualizing and analyzing trajectories from molecular dynamics (MD) simulations |
2019-10-24 |
https://www.ks.uiuc.edu/Research/vmd/ |
|
|
|
To update |
Computational chemistry |
|
|
|
|
chemteam |
https://github.com/thatchristoph/vmd-cvs-github/tree/master/vmd |
https://github.com/galaxycomputationalchemistry/galaxy-tools-compchem/tree/master/tools/vmd |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
waveica |
waveica |
Removal of batch effects for large-scale untargeted metabolomics data based on wavelet analysis. |
2021-02-10 |
https://github.com/RECETOX/WaveICA |
0.2.0 |
r-recetox-waveica |
0.2.1 |
To update |
Metabolomics |
Standardisation and normalisation |
Standardisation and normalisation |
Metabolomics |
Metabolomics |
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/waveica |
https://github.com/RECETOX/galaxytools/tree/master/tools/waveica |
waveica |
WaveICA |
Removal of batch effects for large-scale untargeted metabolomics data based on wavelet transform. |
|
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
8 |
8 |
53 |
53 |
4 |
4 |
5 |
5 |
1 |
1 |
228 |
228 |
3 |
3 |
12 |
12 |
298 |
298 |
16 |
16 |
https://usegalaxy.eu/published/workflow?id=3086366b744e8da9 |
metabolomics/gc_ms_with_xcms |
|
wisecondorx |
wisecondorx_npz_converter, wisecondorx_predict, wisecondorx_reference_builder |
WisecondorX |
2024-12-15 |
https://github.com/CenterForMedicalGeneticsGhent/WisecondorX/tree/master |
1.2.9 |
wisecondorx |
1.2.9 |
Up-to-date |
Variant Analysis |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/master/tools/wisecondorx |
https://github.com/ARTbio/tools-artbio/tree/main/tools/wisecondorx |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
wtv |
wtv |
A cli/python library for ion selection in mass spectrometry. |
2025-06-02 |
https://github.com/RECETOX/wtv |
0.1.0 |
wtv |
0.1.0 |
Up-to-date |
Metabolomics |
Feature selection |
Feature selection |
Metabolomics |
Metabolomics |
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/wtv |
https://github.com/RECETOX/galaxytools/tree/master/tools/wtv |
wtv |
wtv |
A CLI/python library that selects characteristic qualitative ions based on https://github.com/yuanhonglun/WTV_2.0 |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
xarray |
timeseries_extraction, xarray_coords_info, xarray_mapplot, xarray_metadata_info, xarray_netcdf2netcdf, xarray_select |
xarray (formerly xray) is an open source project and Python package that makes working withlabelled multi-dimensional arrays simple, efficient, and fun!xarray integrates with Dask to support parallel computations and streaming computation on datasetsthat don’t fit into memory. |
2020-05-06 |
http://xarray.pydata.org |
2022.3.0 |
xarray |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/data_manipulation/xarray/ |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/data_manipulation/xarray |
|
|
|
|
5 |
2 |
6 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
2 |
0 |
128 |
128 |
6034 |
6034 |
10 |
10 |
71 |
71 |
2 |
2 |
358 |
358 |
4 |
4 |
18 |
18 |
6481 |
6481 |
144 |
144 |
https://dev.workflowhub.eu/workflows/1185?version=2, https://dev.workflowhub.eu/workflows/1193?version=1, https://dev.workflowhub.eu/workflows/1195?version=2, https://dev.workflowhub.eu/workflows/1260?version=1, https://usegalaxy.eu/published/workflow?id=0c6dd9e75d9a2130, https://usegalaxy.eu/published/workflow?id=4f0f3b911b4e4921, https://usegalaxy.eu/published/workflow?id=6afc245029ce5008, https://usegalaxy.eu/published/workflow?id=6df53b44018b2235, https://usegalaxy.eu/published/workflow?id=7b50e72deb46c6e8, https://usegalaxy.eu/published/workflow?id=a80f9b926ba43892, https://usegalaxy.eu/published/workflow?id=b4bfcbf8acee9cc3, https://usegalaxy.eu/published/workflow?id=d94460f342b70eb3, https://usegalaxy.eu/published/workflow?id=f774cf05ddff3612, https://usegalaxy.eu/published/workflow?id=fc33ea1679e5f1b7, https://workflowhub.eu/workflows/1427?version=1, https://workflowhub.eu/workflows/1432?version=1, https://workflowhub.eu/workflows/1436?version=1, https://workflowhub.eu/workflows/1652?version=1 |
climate/argo_pangeo, climate/fates, climate/pangeo, ecology/x-array-map-plot |
|
xarray_import_data |
xarray_import_data |
A data import tool for opening OPeNDAP datasets and storing as netCDF files. |
2025-08-14 |
http://xarray.pydata.org |
0.1.0 |
xarray |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/xarray_import_data |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/xarray_import_data |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
xlsx2tsv |
xlsx2tsv |
Convert an xlsx file to a tabular |
2024-12-16 |
https://github.com/Helmholtz-UFZ/galaxy-tools |
0.1.0+galaxy0 |
pandas |
|
To update |
Text Manipulation |
|
|
|
|
ufz |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/xls2tsv |
https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/xls2tsv |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
xmlstarlet |
xmlstarlet |
Tool to convert a xml file from one metadata standard to another |
2021-10-18 |
|
1.6.1 |
xmlstarlet |
|
To update |
Convert Formats |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/main/tools-ecology/tools/xmlstarlet |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/xmlstarlet |
|
|
|
|
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
18 |
18 |
100 |
100 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
3 |
3 |
3 |
103 |
103 |
21 |
21 |
https://usegalaxy.eu/published/workflow?id=8a81615501be20fd, https://usegalaxy.eu/published/workflow?id=f98560da584d5abf |
|
|
xpore |
xpore_dataprep, xpore_diffmod |
Identification and quantification of differential RNA modifications from direct RNA sequencing |
2021-05-26 |
https://github.com/GoekeLab/xpore |
2.1+galaxy0 |
xpore |
2.1 |
To update |
Nanopore |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/master/tools/xpore |
https://github.com/ARTbio/tools-artbio/tree/main/tools/xpore |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
xtb_molecular_optimization |
xtb_molecular_optimization |
Performs semiempirical molecular optimization. |
2023-08-24 |
https://github.com/grimme-lab/xtb |
6.6.1 |
xtb |
|
To update |
Metabolomics |
|
|
|
|
recetox |
https://github.com/RECETOX/galaxytools/tree/master/tools/xtb |
https://github.com/RECETOX/galaxytools/tree/master/tools/xtb |
|
|
|
|
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 |
6 |
185 |
185 |
0 |
0 |
0 |
0 |
2 |
2 |
77 |
77 |
0 |
0 |
0 |
0 |
262 |
262 |
8 |
8 |
https://dev.workflowhub.eu/workflows/1367?version=1, https://usegalaxy.eu/published/workflow?id=4e9a2e12467bc02e, https://usegalaxy.eu/published/workflow?id=5465916d9b51f411, https://workflowhub.eu/workflows/1597?version=1, https://workflowhub.eu/workflows/897?version=3 |
metabolomics/qcxms-predictions |
|
yac_clipper |
yac |
Clips 3' adapters for small RNA sequencing reads. |
2015-06-17 |
http://artbio.fr |
2.5.1 |
python |
|
To update |
RNA, Fastq Manipulation |
|
|
|
|
artbio |
https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper |
https://github.com/ARTbio/tools-artbio/tree/main/tools/yac_clipper |
|
|
|
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
|
zeiss_lmd_converter |
ZeissLMDconverter |
Converts coordinates from a tabular file into a formatted text file readable by Zeiss laser-capture microdissection systems |
2024-06-29 |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/zeiss_lmd_converter |
2.0.4 |
shapely |
|
To update |
Proteomics |
|
|
|
|
galaxyp |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/zeiss_lmd_converter |
https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/zeiss_lmd_converter |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
8 |
8 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8 |
8 |
2 |
2 |
|
|
|
zoo_project_ogc_api_processes |
zoo_project_ogc_api_processes |
This tool is a wrapper for OGC API Processes (OTB) coming from the Zoo Project (https://zoo-project.github.io/docs/intro.html) and was created using the OGC-API-Process2Galaxy tool (https://github.com/AquaINFRA/OGC-API-Process2Galaxy). Check the README in the repository for more information. |
2024-05-03 |
https://github.com/AquaINFRA/galaxy |
0.1.0 |
r-base |
|
To update |
Ecology |
|
|
|
|
ecology |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper |
https://github.com/galaxyecology/tools-ecology/tree/master/tools/zoo_project_ogc_api_processes |
|
|
|
|
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
4 |
26 |
26 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
26 |
26 |
4 |
4 |
https://usegalaxy.eu/published/workflow?id=e95bfab07fdec632 |
|